Query psy5450
Match_columns 133
No_of_seqs 117 out of 145
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 17:52:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01781 AF6_RA_repeat2 Ubiquit 100.0 1.9E-37 4.1E-42 220.3 12.0 98 26-132 1-98 (100)
2 KOG1892|consensus 100.0 7E-37 1.5E-41 278.2 12.1 113 1-132 209-321 (1629)
3 cd01783 DAGK_delta_RA Ubiquiti 99.9 3.2E-26 6.9E-31 162.0 9.5 80 26-122 2-81 (97)
4 cd01768 RA RA (Ras-associating 99.8 4.6E-20 1E-24 125.6 11.4 85 28-132 1-85 (87)
5 PF00788 RA: Ras association ( 99.8 4.3E-20 9.4E-25 125.3 11.1 88 26-132 2-89 (93)
6 smart00314 RA Ras association 99.8 9.6E-20 2.1E-24 124.8 10.6 86 26-132 2-87 (90)
7 cd01779 Myosin_IXb_RA ubitquit 99.7 5.2E-18 1.1E-22 119.9 6.9 80 24-123 8-87 (105)
8 cd00153 RalGDS_RA Ubiquitin do 99.2 5.3E-11 1.2E-15 82.5 6.3 44 39-82 15-58 (87)
9 cd01780 PLC_epsilon_RA Ubiquit 99.2 1.9E-10 4.2E-15 80.8 8.5 90 29-133 3-92 (93)
10 cd01782 AF6_RA_repeat1 Ubiquit 98.9 5.8E-09 1.3E-13 75.4 7.9 88 26-132 21-110 (112)
11 cd01778 RASSF1_RA Ubiquitin-li 98.7 8.7E-08 1.9E-12 67.9 7.4 77 38-131 14-90 (96)
12 cd01786 STE50_RA Ubiquitin-lik 98.5 3.9E-07 8.5E-12 64.3 6.1 65 35-119 19-83 (98)
13 cd01784 rasfadin_RA Ubiquitin- 98.4 1.5E-06 3.3E-11 60.6 7.3 65 41-125 13-77 (87)
14 cd01787 GRB7_RA RA (RAS-associ 98.3 6.2E-06 1.4E-10 57.3 8.7 79 28-130 4-82 (85)
15 cd01785 PDZ_GEF_RA Ubiquitin-l 98.3 2.6E-06 5.6E-11 58.7 6.4 51 27-82 3-53 (85)
16 cd01775 CYR1_RA Ubiquitin doma 98.0 6.3E-05 1.4E-09 53.5 8.6 66 27-118 3-68 (97)
17 KOG3629|consensus 97.8 1.8E-05 4E-10 70.7 4.3 55 27-82 610-664 (728)
18 KOG1892|consensus 97.6 0.00012 2.6E-09 69.2 6.0 106 7-132 19-128 (1629)
19 cd01776 Rin1_RA Ubiquitin doma 97.3 0.002 4.3E-08 44.8 7.5 75 35-131 8-82 (87)
20 KOG4239|consensus 96.9 0.0023 5E-08 54.0 6.1 67 40-123 213-280 (348)
21 cd01777 SNX27_RA Ubiquitin dom 96.8 0.0027 5.9E-08 44.4 4.9 75 39-132 10-85 (87)
22 KOG3751|consensus 96.1 0.013 2.8E-07 52.6 5.7 80 24-127 186-265 (622)
23 KOG1574|consensus 95.8 0.016 3.5E-07 49.8 5.0 61 47-131 22-82 (375)
24 smart00295 B41 Band 4.1 homolo 95.3 0.15 3.1E-06 38.3 8.1 50 27-82 4-53 (207)
25 PF11470 TUG-UBL1: GLUT4 regul 94.8 0.057 1.2E-06 35.6 4.1 38 37-77 3-40 (65)
26 cd00196 UBQ Ubiquitin-like pro 93.1 0.25 5.3E-06 28.1 4.3 38 39-79 6-43 (69)
27 KOG3542|consensus 92.8 0.2 4.3E-06 46.9 5.1 43 39-82 767-809 (1283)
28 PF09379 FERM_N: FERM N-termin 90.4 2.1 4.5E-05 27.7 6.9 37 40-78 6-42 (80)
29 PF14847 Ras_bdg_2: Ras-bindin 89.7 0.92 2E-05 32.5 5.0 43 38-81 8-50 (105)
30 KOG3784|consensus 89.1 1.2 2.6E-05 38.9 6.1 98 3-115 70-178 (407)
31 smart00455 RBD Raf-like Ras-bi 84.1 1.4 3E-05 29.1 3.1 39 37-78 6-44 (70)
32 PF02196 RBD: Raf-like Ras-bin 82.4 2.4 5.2E-05 27.9 3.8 37 38-74 8-44 (71)
33 cd01818 TIAM1_RBD Ubiquitin do 82.2 2.9 6.3E-05 28.6 4.1 38 37-77 6-43 (77)
34 PF00794 PI3K_rbd: PI3-kinase 81.1 2.1 4.6E-05 29.8 3.3 47 27-76 17-66 (106)
35 PF14039 YusW: YusW-like prote 79.8 2.3 5E-05 29.7 3.1 34 42-76 53-86 (92)
36 cd01760 RBD Ubiquitin-like dom 78.9 3.3 7.1E-05 27.7 3.5 40 37-79 6-45 (72)
37 smart00144 PI3K_rbd PI3-kinase 69.2 14 0.00029 26.2 4.9 37 41-77 29-69 (108)
38 PF14533 USP7_C2: Ubiquitin-sp 68.1 7.8 0.00017 30.5 3.8 39 43-81 36-74 (213)
39 KOG2378|consensus 65.0 16 0.00035 33.0 5.4 41 37-81 242-282 (573)
40 KOG1117|consensus 61.8 28 0.00062 33.8 6.7 75 27-120 927-1001(1186)
41 PF06021 Gly_acyl_tr_N: Aralky 54.9 7.6 0.00017 31.1 1.6 36 7-50 11-60 (205)
42 cd00754 MoaD Ubiquitin domain 52.3 27 0.00058 22.3 3.7 54 29-82 3-57 (80)
43 cd01817 RGS12_RBD Ubiquitin do 47.3 41 0.00089 22.7 4.0 34 38-71 7-40 (73)
44 cd01795 USP48_C USP ubiquitin- 45.4 86 0.0019 22.7 5.6 29 43-71 17-45 (107)
45 KOG0324|consensus 44.3 41 0.00089 27.2 4.2 51 26-77 59-109 (214)
46 COG2127 Uncharacterized conser 41.2 55 0.0012 23.7 4.1 33 32-64 19-51 (107)
47 smart00099 btg1 tob/btg1 famil 39.5 46 0.001 24.0 3.5 37 32-70 47-83 (108)
48 PF02344 Myc-LZ: Myc leucine z 38.2 28 0.0006 20.0 1.7 16 3-18 14-29 (32)
49 PF14804 Jag_N: Jag N-terminus 36.9 46 0.00099 20.7 2.8 27 51-78 5-31 (52)
50 TIGR01682 moaD molybdopterin c 36.7 85 0.0019 20.3 4.3 52 29-81 3-56 (80)
51 COG1604 CRISPR system related 31.5 67 0.0015 26.6 3.6 44 36-79 206-254 (257)
52 PF08300 HCV_NS5a_1a: Hepatiti 31.4 9.4 0.0002 25.1 -1.1 27 26-52 36-62 (62)
53 PF00666 Cathelicidins: Cathel 31.4 40 0.00086 22.4 1.9 29 54-82 5-33 (67)
54 PF07742 BTG: BTG family; Int 30.1 33 0.00071 24.9 1.5 52 7-68 32-83 (118)
55 PF13783 DUF4177: Domain of un 29.4 1.2E+02 0.0026 18.8 3.9 37 41-82 3-42 (61)
56 PF09084 NMT1: NMT1/THI5 like; 29.1 69 0.0015 23.7 3.2 36 41-79 92-127 (216)
57 cd06409 PB1_MUG70 The MUG70 pr 28.0 1.2E+02 0.0026 20.9 3.9 35 45-79 15-49 (86)
58 cd01816 Raf_RBD Ubiquitin doma 27.5 1.1E+02 0.0025 20.7 3.6 37 40-76 9-45 (74)
59 KOG0113|consensus 26.9 67 0.0015 27.5 2.9 30 37-66 96-127 (335)
60 PF00031 Cystatin: Cystatin do 26.6 46 0.00099 21.9 1.6 33 50-82 10-42 (94)
61 KOG0904|consensus 25.7 1.6E+02 0.0034 29.0 5.4 54 27-81 199-264 (1076)
62 PF12436 USP7_ICP0_bdg: ICP0-b 25.7 2.1E+02 0.0046 22.9 5.6 37 43-81 87-123 (249)
63 PF11543 UN_NPL4: Nuclear pore 23.4 1.3E+02 0.0027 20.1 3.3 27 43-69 16-42 (80)
64 PF15583 Imm41: Immunity prote 22.8 31 0.00067 26.6 0.2 40 39-81 101-140 (158)
65 TIGR01687 moaD_arch MoaD famil 20.5 1.9E+02 0.0042 18.8 3.8 52 29-81 3-62 (88)
66 cd03348 pro_PheOH Prokaryotic 20.1 55 0.0012 26.6 1.2 15 24-38 164-178 (228)
No 1
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=100.00 E-value=1.9e-37 Score=220.31 Aligned_cols=98 Identities=45% Similarity=0.741 Sum_probs=91.8
Q ss_pred CceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEE
Q psy5450 26 GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREY 105 (133)
Q Consensus 26 ~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~er 105 (133)
+|+|||||++|+++++||||+||++|||.+||++||+||||++++|++||||||++. ++ .....|++++||
T Consensus 1 gG~LKIYg~~L~~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~-~~--------~~~~~~r~~~eR 71 (100)
T cd01781 1 GGTLKIYGGSLVPTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSND-DD--------RKSSDLREIDER 71 (100)
T ss_pred CCeEEEcCCcccCCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEecc-cc--------cccccccceeEE
Confidence 589999999999999999999999999999999999999999999999999999886 31 234568999999
Q ss_pred ecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450 106 ILDEDECPLAILMNHPQSRESRTIQFK 132 (133)
Q Consensus 106 vL~d~E~PL~~~~~wp~~~~~~~~~~~ 132 (133)
+|+|+||||+++.+||+++|.++||+|
T Consensus 72 il~d~E~Pl~i~~~w~~~~g~~~f~l~ 98 (100)
T cd01781 72 ILDDDECPLFIMTAGPGENGFDSFLAI 98 (100)
T ss_pred eCCCCcCHHHHHHhCCCccCceeeEEe
Confidence 999999999999999999999999987
No 2
>KOG1892|consensus
Probab=100.00 E-value=7e-37 Score=278.17 Aligned_cols=113 Identities=57% Similarity=0.968 Sum_probs=109.7
Q ss_pred ChhHHHHHHHHHhhhccccCCCCCCCceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEe
Q psy5450 1 MRRRRQQKLEQKLQQFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVN 80 (133)
Q Consensus 1 m~~rr~q~~~~k~~~~r~~d~~p~~~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~ 80 (133)
||||||||||+|||+|||.||+|+.||+|||||++|++.+||||||++.++.|+.+|.||||||||+++++.+||++.|.
T Consensus 209 MrrRRqqKLEkklqefrs~dg~pdsGGtLkiYg~sl~p~~PYktiLlsi~d~Ad~~v~eaLeKYGLEk~~p~~yci~~vn 288 (1629)
T KOG1892|consen 209 MRRRRQQKLEKKLQEFRSSDGRPDSGGTLKIYGDSLKPNIPYKTILLSITDPADFAVAEALEKYGLEKENPKDYCIARVN 288 (1629)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCeeEEeccccCCCCcceeeeeecCChHHHHHHHHHHHhcccccCCCceEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cCCCCCCcccccCCCCcccccceEEecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450 81 TAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFK 132 (133)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~~~~~wp~~~~~~~~~~~ 132 (133)
.+ ..|.+|+|+||||.+++.||.++|+++||+|
T Consensus 289 sD-------------------~~e~ilDddECPL~i~~~~p~~~g~~~f~~k 321 (1629)
T KOG1892|consen 289 SD-------------------AKEIILDDDECPLQIFREWPSDKGILVFQLK 321 (1629)
T ss_pred CC-------------------cceeeccCccCcHHHHHhCCCccceEEEEEc
Confidence 43 4699999999999999999999999999998
No 3
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=99.93 E-value=3.2e-26 Score=161.99 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=75.0
Q ss_pred CceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEE
Q psy5450 26 GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREY 105 (133)
Q Consensus 26 ~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~er 105 (133)
.|+||||||||+++++|++|+|+++||+++||.+||+||||+++++++|+|+||+++ +++.||
T Consensus 2 ~g~iKVY~G~L~~~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ld-----------------~gv~ER 64 (97)
T cd01783 2 KEVVKVYPGWLRVGVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLLD-----------------RGVVER 64 (97)
T ss_pred CceEEEecCccccCcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEEec-----------------CCeeee
Confidence 489999999999999999999999999999999999999999999999999999997 478999
Q ss_pred ecCCCCchhHHHhhCCC
Q psy5450 106 ILDEDECPLAILMNHPQ 122 (133)
Q Consensus 106 vL~d~E~PL~~~~~wp~ 122 (133)
+|+++||||.++.+-.+
T Consensus 65 ~l~~~E~Pl~i~~~~r~ 81 (97)
T cd01783 65 TVLPQEKPLQIRLQLRK 81 (97)
T ss_pred eCCCccChHHHHHHhhh
Confidence 99999999998875433
No 4
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=99.84 E-value=4.6e-20 Score=125.55 Aligned_cols=85 Identities=36% Similarity=0.602 Sum_probs=80.0
Q ss_pred eEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEec
Q psy5450 28 TLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYIL 107 (133)
Q Consensus 28 ~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL 107 (133)
.||||.+++ ++..||+|.|++++||++||+.||+|||++. ++++|+|+||..+ ++.+|.|
T Consensus 1 ~ikV~~~~~-~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~-~~~~y~L~ev~~~------------------~~~er~L 60 (87)
T cd01768 1 VLRVYPEDP-SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDD-DPEDYALVEVLGD------------------GGLERLL 60 (87)
T ss_pred CEEEeCCcC-CCccEEEEEECCCCCHHHHHHHHHHHhCCcC-CcccEEEEEEECC------------------ceEEEEe
Confidence 489999998 9999999999999999999999999999998 8999999999875 3689999
Q ss_pred CCCCchhHHHhhCCCCCcceeEEEe
Q psy5450 108 DEDECPLAILMNHPQSRESRTIQFK 132 (133)
Q Consensus 108 ~d~E~PL~~~~~wp~~~~~~~~~~~ 132 (133)
.|+|+|+.++..|++..+..+|-+|
T Consensus 61 ~~~e~pl~~~~~~~~~~~~~~F~lr 85 (87)
T cd01768 61 LPDECPLQIQLNAPRQREDLRFLLR 85 (87)
T ss_pred CCCCChHHHHHhcCCCCCcEEEEEe
Confidence 9999999999999999999999886
No 5
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=99.84 E-value=4.3e-20 Score=125.31 Aligned_cols=88 Identities=34% Similarity=0.654 Sum_probs=81.0
Q ss_pred CceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEE
Q psy5450 26 GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREY 105 (133)
Q Consensus 26 ~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~er 105 (133)
.|+||||.+...++..|++|.|++++||.+||..+|+|||+ .+++++|+|+++... ...++
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l-~~~~~~y~L~~~~~~------------------~~~er 62 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL-AEDPSDYCLVEVEES------------------GGEER 62 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT-SSSGGGEEEEEEECT------------------TTEEE
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC-CCCCCCEEEEEEEcC------------------CCEEE
Confidence 48999999999999999999999999999999999999999 888999999966554 56899
Q ss_pred ecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450 106 ILDEDECPLAILMNHPQSRESRTIQFK 132 (133)
Q Consensus 106 vL~d~E~PL~~~~~wp~~~~~~~~~~~ 132 (133)
.|+|+|+|+.++..|++......|.||
T Consensus 63 ~L~~~E~pl~i~~~~~~~~~~~~f~lr 89 (93)
T PF00788_consen 63 PLDDDECPLQIQLQWPKDSQNSRFVLR 89 (93)
T ss_dssp EETTTSBHHHHHHTTSSGTTTEEEEEE
T ss_pred EcCCCCchHHHHHhCccccCceEEEEE
Confidence 999999999999999998878888876
No 6
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=99.82 E-value=9.6e-20 Score=124.84 Aligned_cols=86 Identities=30% Similarity=0.500 Sum_probs=79.0
Q ss_pred CceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEE
Q psy5450 26 GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREY 105 (133)
Q Consensus 26 ~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~er 105 (133)
.++||||++.+ ++..|++|.|++++||++||..+|+||+++.. +++|+|+|+.. ++.|+
T Consensus 2 ~~~lrV~~~~~-~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~-~~~y~L~e~~~-------------------~~~er 60 (90)
T smart00314 2 TFVLRVYVDDL-PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD-PEEYVLVEVLP-------------------DGKER 60 (90)
T ss_pred ceEEEEecccC-CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC-cccEEEEEEeC-------------------CcEEE
Confidence 47899999998 89999999999999999999999999999977 99999999973 34799
Q ss_pred ecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450 106 ILDEDECPLAILMNHPQSRESRTIQFK 132 (133)
Q Consensus 106 vL~d~E~PL~~~~~wp~~~~~~~~~~~ 132 (133)
+|.++|+|+.++..|++..+...|-++
T Consensus 61 ~L~~~e~Pl~~~~~~~~~~~~~~f~lr 87 (90)
T smart00314 61 VLPDDENPLQLQKLWPRRGPNLRFVLR 87 (90)
T ss_pred EeCCCCcceEehhhCCCCCCcEEEEEE
Confidence 999999999999999998888888775
No 7
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=99.74 E-value=5.2e-18 Score=119.87 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=74.5
Q ss_pred CCCceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccce
Q psy5450 24 DTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQR 103 (133)
Q Consensus 24 ~~~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ 103 (133)
+..-+|.||++.+..+..||.|.+++++||++||..+++++||+. ...|+|+||... ++.
T Consensus 8 ~~~~~l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~--tk~YvLaEVkEs------------------GgE 67 (105)
T cd01779 8 DAEYHLHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDG--TKCYVLAEVKES------------------GGE 67 (105)
T ss_pred cccEEEEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCc--cccEEEEEeecc------------------CCe
Confidence 345799999999999999999999999999999999999999998 679999999876 678
Q ss_pred EEecCCCCchhHHHhhCCCC
Q psy5450 104 EYILDEDECPLAILMNHPQS 123 (133)
Q Consensus 104 ervL~d~E~PL~~~~~wp~~ 123 (133)
||+|++.+||+++++.||+.
T Consensus 68 EwvL~p~D~pvqR~lLWPr~ 87 (105)
T cd01779 68 EWVLDPTDSPVQRVLLWPRR 87 (105)
T ss_pred eeecCcccCceeeEEeccHH
Confidence 99999999999999999975
No 8
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=99.19 E-value=5.3e-11 Score=82.53 Aligned_cols=44 Identities=39% Similarity=0.521 Sum_probs=42.6
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 39 DVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 39 g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
|+.||||++|++|.+.+||+.||+|+|++.+.+++|+|+|++.+
T Consensus 15 gn~YKSIlltsqDktP~VI~ral~Khnl~~~~~~~Y~L~Q~Lp~ 58 (87)
T cd00153 15 GNLYKSILLTSQDKAPQVIRRAMEKHNLESEVAEDYELVQVLPG 58 (87)
T ss_pred cceEEEEEEecCCcCHHHHHHHHHHhCCCcCCccceEEEEEcCC
Confidence 89999999999999999999999999999999999999999874
No 9
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=99.17 E-value=1.9e-10 Score=80.78 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=74.2
Q ss_pred EEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecC
Q psy5450 29 LKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILD 108 (133)
Q Consensus 29 LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~ 108 (133)
+-||+. .+..||-.|.++..+||.+||++||-|-+-...++.+|.|+|.....+. ++ + -.....|||.
T Consensus 3 v~V~~v--s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~~fVLvEEv~~~~~-~~--------~-~~~~~QRVL~ 70 (93)
T cd01780 3 VCVHNV--SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPSDFVLVEEVCKDTK-NN--------K-TPKSSQRILL 70 (93)
T ss_pred EEEecC--CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCccceEEEEEeecccc-cc--------C-CCChhHhhhh
Confidence 457776 8899999999999999999999999999999999999999988765232 11 0 1245689999
Q ss_pred CCCchhHHHhhCCCCCcceeEEEeC
Q psy5450 109 EDECPLAILMNHPQSRESRTIQFKI 133 (133)
Q Consensus 109 d~E~PL~~~~~wp~~~~~~~~~~~~ 133 (133)
++|||++-|..|.. .=.|-+|+
T Consensus 71 ~~E~v~~aQs~Wkg---~GrFiLk~ 92 (93)
T cd01780 71 DQECVYQAQSKWKG---AGKFILKL 92 (93)
T ss_pred cccchHHHHhhhcC---CceEEEec
Confidence 99999999999995 56777764
No 10
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=98.92 E-value=5.8e-09 Score=75.37 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=74.2
Q ss_pred CceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCC--cCCCCceEEEEEecCCCCCCcccccCCCCcccccce
Q psy5450 26 GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLT--REDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQR 103 (133)
Q Consensus 26 ~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~--~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ 103 (133)
-|+++.|=..-..-++-|.|.|++.+|+.+||+..|+||-.+ ..++..|.|.+|... +.
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~n-------------------Ge 81 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHEN-------------------GE 81 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecC-------------------Cc
Confidence 388999866656677889999999999999999999999877 344559999999543 24
Q ss_pred EEecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450 104 EYILDEDECPLAILMNHPQSRESRTIQFK 132 (133)
Q Consensus 104 ervL~d~E~PL~~~~~wp~~~~~~~~~~~ 132 (133)
++.|.|+|+||..+.+|-++.-...|-+|
T Consensus 82 ~RKL~d~E~PL~~RL~w~~~dre~~FvLk 110 (112)
T cd01782 82 ERRLLDDEKPLVVQLNWHKDDREGRFLLK 110 (112)
T ss_pred eEEcCCcCCCeEEeeccCCCCceeEEEec
Confidence 89999999999999999998877777665
No 11
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=98.69 E-value=8.7e-08 Score=67.94 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=62.2
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchhHHH
Q psy5450 38 RDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAIL 117 (133)
Q Consensus 38 ~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~~~ 117 (133)
|-..-+.|.|++.+|+.+||...|+||.+.. +|..|.|.|+.-. ++ ++..+.|.|+||||.+.
T Consensus 14 p~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~-nP~kFALYe~~h~----------~g------e~~~rkL~d~E~PL~~r 76 (96)
T cd01778 14 PKDTAKHLHISSKTTVREVIEALLKKFLVVD-NPRKFALFEREHR----------TG------QVYLRKLSDDECPLYLR 76 (96)
T ss_pred cCCceeEEEEecCCcHHHHHHHHHHhheecc-CCcceEEEEEEec----------CC------cEEEEECCCCCCCeEee
Confidence 4466799999999999999999999998754 6899999997543 11 45679999999999999
Q ss_pred hhCCCCCcceeEEE
Q psy5450 118 MNHPQSRESRTIQF 131 (133)
Q Consensus 118 ~~wp~~~~~~~~~~ 131 (133)
.+|-++.-..-|-+
T Consensus 77 L~~gp~~~~~~fvL 90 (96)
T cd01778 77 LLAGPSTDALSFVL 90 (96)
T ss_pred EeeCCCCceeEEEE
Confidence 99988764444443
No 12
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=98.49 E-value=3.9e-07 Score=64.31 Aligned_cols=65 Identities=32% Similarity=0.446 Sum_probs=57.9
Q ss_pred ccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchh
Q psy5450 35 SLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPL 114 (133)
Q Consensus 35 ~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL 114 (133)
...+..++|++.||.+|+...|+..||.||++...+...|.|+=+-++ +||.|+-+|+||
T Consensus 19 ~~~~~e~~K~~rvs~dDpC~kVL~~Alkry~I~~~dW~~Y~L~I~Ygd--------------------qER~L~ldEKPl 78 (98)
T cd01786 19 DASPNEPLKQLRASKEDSCEKILKNAMKRHNLNDQDWRQYVLVICYGD--------------------QERILDLDEKPV 78 (98)
T ss_pred CCCccccchheeeeccCcHHHHHHHHHHHcCCChhhhhheEEEEEeCC--------------------eeeeccccccHH
Confidence 344567999999999999999999999999999999999999987443 799999999999
Q ss_pred HHHhh
Q psy5450 115 AILMN 119 (133)
Q Consensus 115 ~~~~~ 119 (133)
.++..
T Consensus 79 ~lFk~ 83 (98)
T cd01786 79 IIFKN 83 (98)
T ss_pred HHHHH
Confidence 99863
No 13
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=98.40 E-value=1.5e-06 Score=60.57 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=53.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchhHHHhhC
Q psy5450 41 PYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNH 120 (133)
Q Consensus 41 ~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~~~~~w 120 (133)
.-+.|.|++.+|+.+||+..|+||-.+ .+|..|.|.+|... + .++.|.|+|+||..-..|
T Consensus 13 s~~~v~VsS~~tt~eVI~~LL~KFkv~-~~p~~FALy~vh~~------------------G-e~rkL~d~E~PL~~Rll~ 72 (87)
T cd01784 13 SVTNVRINSTMTTPQVLKLLLNKFKIE-NSAEEFALYIVHTS------------------G-EKRKLKATDYPLIARVLQ 72 (87)
T ss_pred ceeEEEEecCCCHHHHHHHHHHhcccc-CCHHHeEEEEEeeC------------------C-CEEECCCcCCCeehhhhc
Confidence 458899999999999999999999877 57899999999432 2 489999999999766666
Q ss_pred CCCCc
Q psy5450 121 PQSRE 125 (133)
Q Consensus 121 p~~~~ 125 (133)
-|..-
T Consensus 73 GP~e~ 77 (87)
T cd01784 73 GPCEQ 77 (87)
T ss_pred CCCcc
Confidence 65543
No 14
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=98.31 E-value=6.2e-06 Score=57.34 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=67.9
Q ss_pred eEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEec
Q psy5450 28 TLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYIL 107 (133)
Q Consensus 28 ~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL 107 (133)
++|||- .+...|+|.|..+-||.+|.+...+|-++.. ..+.+|+|.... ..-||.+
T Consensus 4 vvkv~~----~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~--~~~W~LvE~~P~------------------l~lER~~ 59 (85)
T cd01787 4 VVKVYS----EDGASKSLEVDERMTARDVCQLLVDKNHCQD--DSSWTLVEHLPH------------------LQLERLF 59 (85)
T ss_pred EEEEEe----cCCCeeEEEEcCCCcHHHHHHHHHHHhCCCC--CCCeEEEEecch------------------hhhhhhc
Confidence 588885 4578899999999999999999999998876 568999999775 4569999
Q ss_pred CCCCchhHHHhhCCCCCcceeEE
Q psy5450 108 DEDECPLAILMNHPQSRESRTIQ 130 (133)
Q Consensus 108 ~d~E~PL~~~~~wp~~~~~~~~~ 130 (133)
.|+|..+.+++.|+..+.+.-|.
T Consensus 60 EDHE~vvdvl~~W~~~~~n~l~f 82 (85)
T cd01787 60 EDHELVVEVLSTWHSAGNSVLFF 82 (85)
T ss_pred cchHHHHHHHHhcccCCCcEEEE
Confidence 99999999999999976665554
No 15
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=98.30 E-value=2.6e-06 Score=58.68 Aligned_cols=51 Identities=29% Similarity=0.470 Sum_probs=46.1
Q ss_pred ceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 27 GTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 27 g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
-+||||-+ +-.+|-|++++++||.+||.-||+-||+... ++.|+||||.-.
T Consensus 3 ~Vlkvyka----DQt~kyili~K~Tta~evv~lal~eFgi~~~-s~~~sLceVtV~ 53 (85)
T cd01785 3 HVLKVYKA----DQTCKYLLIYKETTAHEVVMLALQEFGITAP-SSNFSLCEVSVT 53 (85)
T ss_pred ceEEEEec----CcceeEEEEeccccHHHHHHHHHHHhCCCCC-ccceEEEEEEec
Confidence 47999976 7889999999999999999999999999876 889999999654
No 16
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=97.99 E-value=6.3e-05 Score=53.48 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=56.7
Q ss_pred ceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEe
Q psy5450 27 GTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYI 106 (133)
Q Consensus 27 g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~erv 106 (133)
.-++||- .+..|.++..+.++|++++|...-.|+.|+.. .+|.|+-... ..+++
T Consensus 3 y~IRIFr----~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~--~ny~l~l~~~--------------------~l~Rv 56 (97)
T cd01775 3 YCIRVFR----SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG--GNYQLSLKKH--------------------DLSRV 56 (97)
T ss_pred eEEEEEe----cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC--CCeEEEEEEC--------------------Ceeee
Confidence 4577774 57899999999999999999999999999875 6899887644 46999
Q ss_pred cCCCCchhHHHh
Q psy5450 107 LDEDECPLAILM 118 (133)
Q Consensus 107 L~d~E~PL~~~~ 118 (133)
|+|.|+|+.+|.
T Consensus 57 L~p~ErPl~Iqk 68 (97)
T cd01775 57 LRPTEKPLLIQK 68 (97)
T ss_pred cCCcCCcHHHHH
Confidence 999999999886
No 17
>KOG3629|consensus
Probab=97.83 E-value=1.8e-05 Score=70.70 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=46.1
Q ss_pred ceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 27 GTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 27 g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
.+++|==+.=.-|+.||+|+++++|.+.+||..||+|++++.. ++.|.||+++..
T Consensus 610 ~iiRv~~ed~~dG~~YKsI~itsqDk~P~vI~Ral~Khn~dsd-~~eYeLVQllp~ 664 (728)
T KOG3629|consen 610 YIIRVGLEDDTDGANYKSIKITSQDKMPQVIARALEKHNIDSD-KNEYELVQLLPR 664 (728)
T ss_pred EEEEEEeecCCCCceeeeEEeecCCccHHHHHHHHHHhccccC-cchhhhheeccC
Confidence 3555544333678999999999999999999999999999875 499999999865
No 18
>KOG1892|consensus
Probab=97.59 E-value=0.00012 Score=69.23 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=82.0
Q ss_pred HHHHHHhhhccccCCCCC--CCceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCC--cCCCCceEEEEEecC
Q psy5450 7 QKLEQKLQQFRSKDGGPD--TGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLT--REDAHQYCLVQVNTA 82 (133)
Q Consensus 7 q~~~~k~~~~r~~d~~p~--~~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~--~e~~~~y~LveV~~~ 82 (133)
|=-++||.-|-.+.+..+ .-|+++.|=-.-..-+.-|.|.|++..|+.+||....|||--+ .-....|.|.||-..
T Consensus 19 qWNaNRLDLF~lS~PtEdLefhGVMRFYFQDag~kvaTKCiRVsStATt~dVidtL~EKFrPDmrMLS~p~YsLyEVH~n 98 (1629)
T KOG1892|consen 19 QWNANRLDLFELSQPTEDLEFHGVMRFYFQDAGGKVATKCIRVSSTATTQDVIDTLAEKFRPDMRMLSSPKYSLYEVHVN 98 (1629)
T ss_pred HhcccccceeeccCCCccceeeeeEEEEeecccchhhhheeEecccccHHHHHHHHHHHhCcchhhhcCCCceeeeeecC
Confidence 334567777654443222 2489999977755567889999999999999999999999655 344568999999654
Q ss_pred CCCCCcccccCCCCcccccceEEecCCCCchhHHHhhCCCCCcceeEEEe
Q psy5450 83 IPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFK 132 (133)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~~~~~wp~~~~~~~~~~~ 132 (133)
.||.|+++|+||.++.+|-.+.-+=-|-+|
T Consensus 99 --------------------GERrL~~dEKPLvVQLnWhkDDREGRFlLK 128 (1629)
T KOG1892|consen 99 --------------------GERRLDIDEKPLVVQLNWHKDDREGRFLLK 128 (1629)
T ss_pred --------------------cccccCcccCceEEEeccccccccceeeee
Confidence 259999999999999999988766667666
No 19
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=97.28 E-value=0.002 Score=44.85 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=59.2
Q ss_pred ccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchh
Q psy5450 35 SLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPL 114 (133)
Q Consensus 35 ~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL 114 (133)
.+.+|-..|++.|.+.+|+++|-...-+||.+++ |++|.|.-+..+ ...-|+|+++|-
T Consensus 8 ~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~q--Pe~y~LFl~vdg--------------------~~~qLadd~~Pq 65 (87)
T cd01776 8 DVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVTQ--PEEYSLFLFVEE--------------------TWQQLAPDTYPQ 65 (87)
T ss_pred cCCCCceeeeeecCCCCcHHHHHHHHHHHhccCC--hhheeEEEEECC--------------------cEEEcCcccccc
Confidence 4677888899999999999999999999998876 999999987543 467899999998
Q ss_pred HHHhhCCCCCcceeEEE
Q psy5450 115 AILMNHPQSRESRTIQF 131 (133)
Q Consensus 115 ~~~~~wp~~~~~~~~~~ 131 (133)
.|-..--++.-.-.|||
T Consensus 66 ~ika~L~~~~~~~~fhf 82 (87)
T cd01776 66 RIKAELHSRPQPNTFHF 82 (87)
T ss_pred eechhhccCCCCcceEE
Confidence 66543223333556666
No 20
>KOG4239|consensus
Probab=96.93 E-value=0.0023 Score=54.04 Aligned_cols=67 Identities=19% Similarity=0.407 Sum_probs=53.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchhH-HHh
Q psy5450 40 VPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLA-ILM 118 (133)
Q Consensus 40 ~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~-~~~ 118 (133)
..-+-|.|++.+||.+||+-.|.||-.+. +|+.|.|.++... + .++..+.|.|+|+||. ++.
T Consensus 213 ~svk~vrInStttt~eVI~~LLkKF~Ved-~P~kFALy~~~~~-----------g-----eqv~~~kLkd~d~PL~~RLL 275 (348)
T KOG4239|consen 213 DSVKNVRINSTTTTREVIKLLLKKFRVED-NPQKFALYERHES-----------G-----EQVKLTKLKDDDYPLILRLL 275 (348)
T ss_pred ccceeEEecccccHHHHHHHHHHHHeecC-CHhheeeeEEeec-----------C-----chhhheecccccccHHHHHH
Confidence 35688999999999999999999996654 7999999999764 0 2566799999999994 444
Q ss_pred hCCCC
Q psy5450 119 NHPQS 123 (133)
Q Consensus 119 ~wp~~ 123 (133)
..|..
T Consensus 276 qGP~e 280 (348)
T KOG4239|consen 276 QGPSE 280 (348)
T ss_pred hCcch
Confidence 55543
No 21
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=96.82 E-value=0.0027 Score=44.36 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchhHHHh
Q psy5450 39 DVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILM 118 (133)
Q Consensus 39 g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~~~~ 118 (133)
...-.+|.+.++++|.+|.+.+..+.||+.+-..-|+|.+|.. -.-+|.|.|.|.|-.+--
T Consensus 10 dg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~-------------------~~f~RKL~dfE~Ph~ly~ 70 (87)
T cd01777 10 DKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVIN-------------------HSFVRKLAPNEFPHKLYV 70 (87)
T ss_pred CCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEec-------------------ceEEEeccCccCCceEEE
Confidence 3556789999999999999999999999999999999999943 346999999999976543
Q ss_pred -hCCCCCcceeEEEe
Q psy5450 119 -NHPQSRESRTIQFK 132 (133)
Q Consensus 119 -~wp~~~~~~~~~~~ 132 (133)
|.-+...+.|..++
T Consensus 71 ~ny~sa~~~~cl~~r 85 (87)
T cd01777 71 QNYTSAVPGTCLTAR 85 (87)
T ss_pred EEeeccCCcceEEEe
Confidence 33333356666554
No 22
>KOG3751|consensus
Probab=96.06 E-value=0.013 Score=52.65 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=67.8
Q ss_pred CCCceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccce
Q psy5450 24 DTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQR 103 (133)
Q Consensus 24 ~~~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ 103 (133)
-..=+||||-. +..-|+++|..+-||++|.+...+|=.... -+++||||.... -+-
T Consensus 186 vrklvVKvfse----DgasksL~Vder~tardV~~lL~eKnH~~~--d~~W~LvEh~P~------------------L~i 241 (622)
T KOG3751|consen 186 VRKLVVKVFSE----DGASKSLLVDERMTARDVCQLLAEKNHCAD--DEDWCLVEHYPH------------------LQI 241 (622)
T ss_pred ccceeEEEEcc----CCceeeEeecccccHHHHHHHHHHhhhhhc--ccceeeeeecch------------------hhh
Confidence 44568999965 677799999999999999999999877654 468999999776 456
Q ss_pred EEecCCCCchhHHHhhCCCCCcce
Q psy5450 104 EYILDEDECPLAILMNHPQSRESR 127 (133)
Q Consensus 104 ervL~d~E~PL~~~~~wp~~~~~~ 127 (133)
||++.|+|..+..+++|+.+.+.-
T Consensus 242 ER~fEDHElVVEvls~W~~dseNK 265 (622)
T KOG3751|consen 242 ERVFEDHELVVEVLSMWTQDSENK 265 (622)
T ss_pred hhhhhhHHHHHHHHhhcccCCCce
Confidence 999999999999999999988653
No 23
>KOG1574|consensus
Probab=95.80 E-value=0.016 Score=49.75 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=50.0
Q ss_pred ecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchhHHHhhCCCCCcc
Q psy5450 47 LSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRES 126 (133)
Q Consensus 47 vt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~~~~~wp~~~~~ 126 (133)
||.+||.++||...++-.|-- -.|||||.-- ..||.|.|.++||..+.-|-.--..
T Consensus 22 vt~~TTCqdVV~ALa~aigq~----Grf~iVEKwR--------------------~~ER~L~p~erpl~ll~~wge~a~n 77 (375)
T KOG1574|consen 22 VTERTTCQDVVIALAQAIGQK----GRFTIVEKWR--------------------GYERHLAPSERPLKLLAKWGEYASN 77 (375)
T ss_pred ccCCccHHHHHHHHHHHhCCC----CceEEeehhc--------------------ccccccCCccCHHHHHHhhhhcccc
Confidence 789999999999999988743 3499999632 4699999999999999999776666
Q ss_pred eeEEE
Q psy5450 127 RTIQF 131 (133)
Q Consensus 127 ~~~~~ 131 (133)
+-|.+
T Consensus 78 vqfvL 82 (375)
T KOG1574|consen 78 VQFVL 82 (375)
T ss_pred ceehh
Confidence 66653
No 24
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=95.26 E-value=0.15 Score=38.29 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=41.4
Q ss_pred ceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 27 GTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 27 g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
-.++||-- +...+++.+++.+|+++|+.++..++|+. ..+.|.|.++...
T Consensus 4 ~~~~V~l~----dg~~~~~~~~~~~t~~ev~~~v~~~~~l~--~~~~F~L~~~~~~ 53 (207)
T smart00295 4 RVLKVYLL----DGTTLEFEVDSSTTAEELLETVCRKLGIR--ESEYFGLQFEDPD 53 (207)
T ss_pred EEEEEEec----CCCEEEEEECCCCCHHHHHHHHHHHhCCC--ccceeEEEEEcCC
Confidence 45666643 45588999999999999999999999994 4789999999654
No 25
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.81 E-value=0.057 Score=35.60 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=25.5
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEE
Q psy5450 37 CRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLV 77 (133)
Q Consensus 37 ~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~Lv 77 (133)
+.+.--..|.+++.++..+|+.+|+.+||++.+ .|.|.
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~---~~~L~ 40 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPS---SYDLK 40 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GG---G-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCcc---ceEEE
Confidence 344556789999999999999999999999875 77775
No 26
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=93.10 E-value=0.25 Score=28.14 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEE
Q psy5450 39 DVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV 79 (133)
Q Consensus 39 g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV 79 (133)
+..+.++.++..+|+.++++.+.+++| .+++.|.|+..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~---~~~~~~~l~~~ 43 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLG---LPPEQQRLLVN 43 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHC---cChHHeEEEEC
Confidence 678899999999999999999999999 45778888754
No 27
>KOG3542|consensus
Probab=92.79 E-value=0.2 Score=46.94 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.4
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 39 DVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 39 g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
+-.+|-|++++++||.+||.-||.-||+.. .+..|.||||.-.
T Consensus 767 DQqs~Yi~isKdTtAkeVV~~A~~EF~~Ta-~sd~ySLCEvsVT 809 (1283)
T KOG3542|consen 767 DQQSKYIPISKDTTAKEVVQLALQEFNMTA-GSDEYSLCEVSVT 809 (1283)
T ss_pred cccceeEEEeccccHHHHHHHHHHHhcccc-CCCceeeEEEEec
Confidence 456788999999999999999999999987 7889999999654
No 28
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.42 E-value=2.1 Score=27.73 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEE
Q psy5450 40 VPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQ 78 (133)
Q Consensus 40 ~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~Lve 78 (133)
...+++.+++++|+++++..+.+++||.. .+-|.|+-
T Consensus 6 ~~~~~~~v~~~~t~~~l~~~v~~~l~l~e--~~~FgL~~ 42 (80)
T PF09379_consen 6 GTTKTFEVDPKTTGQDLLEQVCDKLGLKE--KEYFGLQY 42 (80)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHTTSS--GGGEEEEE
T ss_pred CCcEEEEEcCCCcHHHHHHHHHHHcCCCC--ccEEEEEE
Confidence 45689999999999999999999999974 77999998
No 29
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=89.73 E-value=0.92 Score=32.52 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=30.4
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEec
Q psy5450 38 RDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT 81 (133)
Q Consensus 38 ~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~ 81 (133)
.+...++|-|+-=.+|.+|+..||.|||+.. ++.+|+-.-+-.
T Consensus 8 ~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~-~~~~~~~~v~d~ 50 (105)
T PF14847_consen 8 EDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE-HPRNYCFYVLDG 50 (105)
T ss_dssp TTTEEEEEE--S--HHHHHHHHHHHHHTSS---CCCEEEEEE-S
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHcCCcc-ccccceEEEecc
Confidence 3567789999999999999999999999987 677888766544
No 30
>KOG3784|consensus
Probab=89.06 E-value=1.2 Score=38.86 Aligned_cols=98 Identities=24% Similarity=0.202 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCceEEEe--CCc---------cCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCC
Q psy5450 3 RRRQQKLEQKLQQFRSKDGGPDTGGTLKIY--GES---------LCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDA 71 (133)
Q Consensus 3 ~rr~q~~~~k~~~~r~~d~~p~~~g~LKIY--g~~---------L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~ 71 (133)
+.|.+.+|+-||.++ .+..+..++.+-.| +.. +-|..--.+|-+..++||..+.+-|..++|+.++-.
T Consensus 70 ~~rr~~leqylqa~~-q~~~l~~s~~~~~fL~~~q~~~~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i 148 (407)
T KOG3784|consen 70 DSRRRGLEQYLQAVC-QDPVLARSELVQKFLMRAQPMEEVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELI 148 (407)
T ss_pred HHHHHHHHHHHHHHh-cCccccchhhhhHHHHhccccceeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhh
Confidence 356677777777753 44444443333221 111 115667788999999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcccccCCCCcccccceEEecCCCCchhH
Q psy5450 72 HQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYILDEDECPLA 115 (133)
Q Consensus 72 ~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~ervL~d~E~PL~ 115 (133)
..|+|.+|....++ .--..|-|.+.|.|-.
T Consensus 149 ~~f~lFlvr~~~~~--------------~ls~vRkl~~fE~p~v 178 (407)
T KOG3784|consen 149 GYFGLFLVRDNDPG--------------NLSFVRKLADFESPYV 178 (407)
T ss_pred hheeeeEEeccCCC--------------cceeeeeecccccccc
Confidence 99999999775221 1234677888888763
No 31
>smart00455 RBD Raf-like Ras-binding domain.
Probab=84.10 E-value=1.4 Score=29.10 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=31.8
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEE
Q psy5450 37 CRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQ 78 (133)
Q Consensus 37 ~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~Lve 78 (133)
-|.....+|.+.+..|+.+++..+++|+|++. +.+.|..
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~---~~~~v~~ 44 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNP---ECCVVRL 44 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCH---HHEEEEE
Confidence 35667889999999999999999999999964 4444443
No 32
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=82.42 E-value=2.4 Score=27.93 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=28.3
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCce
Q psy5450 38 RDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQY 74 (133)
Q Consensus 38 ~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y 74 (133)
|.....+|.+-+..|+++++..+|+++||..++..-|
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~ 44 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVR 44 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 5567788999999999999999999999987654444
No 33
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=82.23 E-value=2.9 Score=28.63 Aligned_cols=38 Identities=11% Similarity=-0.038 Sum_probs=33.0
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEE
Q psy5450 37 CRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLV 77 (133)
Q Consensus 37 ~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~Lv 77 (133)
.|...+..+.+.+..|+.+++..|-.+.||++ +.|+|=
T Consensus 6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp---~eh~Lr 43 (77)
T cd01818 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDP---MEHYLR 43 (77)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHhcCCCh---hHheeE
Confidence 47788999999999999999999999999885 566664
No 34
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=81.10 E-value=2.1 Score=29.77 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=32.8
Q ss_pred ceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHH--hCCCcCCCC-ceEE
Q psy5450 27 GTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAK--YGLTREDAH-QYCL 76 (133)
Q Consensus 27 g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLek--yGL~~e~~~-~y~L 76 (133)
=.+.||.. ....-.++.++.++|+.++|.++|.+ -++...+.. +|.|
T Consensus 17 i~v~v~~~---~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvL 66 (106)
T PF00794_consen 17 IKVSVHFE---NSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVL 66 (106)
T ss_dssp EEEEEEET---TCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEE
T ss_pred EEEEEEEc---CCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEE
Confidence 45667766 45667899999999999999999999 122232233 7776
No 35
>PF14039 YusW: YusW-like protein
Probab=79.76 E-value=2.3 Score=29.71 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=28.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEE
Q psy5450 42 YKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCL 76 (133)
Q Consensus 42 YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~L 76 (133)
...+.++++++-.+||.++|..|||++ +-..|.|
T Consensus 53 l~~L~~~~~t~~~evi~~Vl~~f~Ld~-dy~~fel 86 (92)
T PF14039_consen 53 LSELSFDSDTSEEEVIDQVLKAFNLDP-DYQEFEL 86 (92)
T ss_pred HHhCCCCCCCChHHHHHHHHHHhCCCc-cceEEEE
Confidence 456778899999999999999999998 6666655
No 36
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=78.86 E-value=3.3 Score=27.67 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=33.0
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEE
Q psy5450 37 CRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV 79 (133)
Q Consensus 37 ~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV 79 (133)
-|.....+|.+.+..|+.+++..++++.|++. +.|.|.-+
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~---~~~~v~~~ 45 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNP---ECCDVFLL 45 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCH---HHEEEEEe
Confidence 36677889999999999999999999999985 45555544
No 37
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=69.17 E-value=14 Score=26.15 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=26.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHh-C--CCcCCCC-ceEEE
Q psy5450 41 PYKTLLLSVRDNATQVVKEMLAKY-G--LTREDAH-QYCLV 77 (133)
Q Consensus 41 ~YksIlvt~~sta~~vV~eaLeky-G--L~~e~~~-~y~Lv 77 (133)
.=.++.++.++|+.+||+.++.+. . .+.+++. +|.|=
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLk 69 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILK 69 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEE
Confidence 338999999999999999999983 1 1223333 77763
No 38
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=68.12 E-value=7.8 Score=30.46 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=25.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEec
Q psy5450 43 KTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT 81 (133)
Q Consensus 43 ksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~ 81 (133)
-++++.++.|+.+++.++..+.+++.++.....|.++..
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~ 74 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSN 74 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHTT----TT----EEEEEEET
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeEC
Confidence 689999999999999999999999988888999999844
No 39
>KOG2378|consensus
Probab=64.96 E-value=16 Score=32.99 Aligned_cols=41 Identities=27% Similarity=0.446 Sum_probs=35.8
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEec
Q psy5450 37 CRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT 81 (133)
Q Consensus 37 ~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~ 81 (133)
+++..|.+|.+...+++++++..+-+|.|-..+ -.||.|..
T Consensus 242 ~~Dhsy~tl~~~vs~svqEI~~~va~k~~~see----l~LV~v~s 282 (573)
T KOG2378|consen 242 LPDHSYVTLRIRVSASVQEILEAVAEKLGYSEE----LILVKVSS 282 (573)
T ss_pred ecCceEEEEEeechhHHHHHHHHHHHHhccccc----eeEEEEcc
Confidence 688999999999999999999999999997765 56777743
No 40
>KOG1117|consensus
Probab=61.83 E-value=28 Score=33.82 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=60.7
Q ss_pred ceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecCCCCCCcccccCCCCcccccceEEe
Q psy5450 27 GTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQFMNNQREYI 106 (133)
Q Consensus 27 g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~~~~~~~~~~~~~~~~~~~~~~erv 106 (133)
-++-||=..=. ..+-..|.|+..=||++|-.++|++-|...-.-+-|...||+.. ++-||.
T Consensus 927 fi~eVyveeKe-pd~~~~ikVs~sm~aEEltneila~r~~~~~~~d~watFEv~e~------------------~eleRp 987 (1186)
T KOG1117|consen 927 FIIEVYVEEKE-PDCSIIIKVSPSMTAEELTNEILAIRNIIPTKGDIWATFEVIEN------------------EELERP 987 (1186)
T ss_pred EEEEEEEeecC-CCcceeEecCccccHHHHHHHHHHhcCCCCCCCCceEEEEEccC------------------cccccC
Confidence 36777866433 34557899999999999999999999998766678899999876 677999
Q ss_pred cCCCCchhHHHhhC
Q psy5450 107 LDEDECPLAILMNH 120 (133)
Q Consensus 107 L~d~E~PL~~~~~w 120 (133)
|+..|+.|.-...|
T Consensus 988 Lh~aekvleqvLqw 1001 (1186)
T KOG1117|consen 988 LHYAEKVLEQVLQW 1001 (1186)
T ss_pred CchHHHHHHHHHhh
Confidence 99999999755544
No 41
>PF06021 Gly_acyl_tr_N: Aralkyl acyl-CoA:amino acid N-acyltransferase; InterPro: IPR015938 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].; GO: 0047961 glycine N-acyltransferase activity, 0005739 mitochondrion
Probab=54.94 E-value=7.6 Score=31.05 Aligned_cols=36 Identities=33% Similarity=0.599 Sum_probs=24.4
Q ss_pred HHHHHHhhhccccCCCCCCCceEEEeCC--ccCCCCC------------eEEEEecCC
Q psy5450 7 QKLEQKLQQFRSKDGGPDTGGTLKIYGE--SLCRDVP------------YKTLLLSVR 50 (133)
Q Consensus 7 q~~~~k~~~~r~~d~~p~~~g~LKIYg~--~L~~g~~------------YksIlvt~~ 50 (133)
|.||+-|+. .-|..|||||. -+.-|+| |++|.+.++
T Consensus 11 q~Le~~L~k--------~~PeSLKVYG~V~~INrGNPf~~EVlVDsWPdF~tVItRPq 60 (205)
T PF06021_consen 11 QILEKSLRK--------SFPESLKVYGAVFNINRGNPFNLEVLVDSWPDFKTVITRPQ 60 (205)
T ss_pred HHHHHHHHH--------hCchhheeeeEEEEecCCCCcceEEEEecCCCceEEEEccC
Confidence 556666665 34577999999 4667764 666666655
No 42
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=52.32 E-value=27 Score=22.29 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=36.5
Q ss_pred EEEeCCc-cCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 29 LKIYGES-LCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 29 LKIYg~~-L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
++.||.- -..|.....+-++..+|..++++...++|+-.......++.+.|...
T Consensus 3 v~~f~~l~~~~g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~ 57 (80)
T cd00754 3 VLYFARLREAAGKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGE 57 (80)
T ss_pred EEEeHHHHHHhCCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCe
Confidence 5666651 22466778888888999999999999988531122346677777554
No 43
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=47.26 E-value=41 Score=22.70 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=28.0
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCC
Q psy5450 38 RDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDA 71 (133)
Q Consensus 38 ~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~ 71 (133)
|.-.-.+|.+.+..|..+++..+|++-||..++.
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~ 40 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAV 40 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHE
Confidence 3445578889999999999999999999986443
No 44
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=45.44 E-value=86 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=26.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcCCC
Q psy5450 43 KTLLLSVRDNATQVVKEMLAKYGLTREDA 71 (133)
Q Consensus 43 ksIlvt~~sta~~vV~eaLekyGL~~e~~ 71 (133)
+++.|++++|..++=...+.+||+..++.
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQ 45 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQ 45 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccc
Confidence 89999999999999999999999877554
No 45
>KOG0324|consensus
Probab=44.33 E-value=41 Score=27.17 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=37.4
Q ss_pred CceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEE
Q psy5450 26 GGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLV 77 (133)
Q Consensus 26 ~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~Lv 77 (133)
.|+..+=++.---+..-+||.+...|-..+.|++.|+++|-+ -..+.|.|.
T Consensus 59 sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~~~le~L~~e-y~G~~YhL~ 109 (214)
T KOG0324|consen 59 SGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVRRILEELSEE-YRGNSYHLL 109 (214)
T ss_pred CCeEeeCCCCCCCCceeEEEEecCCCCCHHHHHHHHHHHHhh-cCCceehhh
Confidence 466666666443456778899999999999999999999853 334455543
No 46
>COG2127 Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=55 Score=23.66 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=29.1
Q ss_pred eCCccCCCCCeEEEEecCCCCHHHHHHHHHHHh
Q psy5450 32 YGESLCRDVPYKTLLLSVRDNATQVVKEMLAKY 64 (133)
Q Consensus 32 Yg~~L~~g~~YksIlvt~~sta~~vV~eaLeky 64 (133)
.--++.++..|+.|+++-.-|..+.|..+|+++
T Consensus 19 ~~t~~~~p~~ykVillNDd~T~mefVv~vL~~~ 51 (107)
T COG2127 19 TKTKTKPPKMYKVILLNDDYTPMEFVVYVLQKF 51 (107)
T ss_pred CCcccCCCCceeEEEecCCCcHHHHHHHHHHHH
Confidence 334588999999999999999999999999986
No 47
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=39.51 E-value=46 Score=24.04 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=33.1
Q ss_pred eCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCcCC
Q psy5450 32 YGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTRED 70 (133)
Q Consensus 32 Yg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~e~ 70 (133)
|++.-..|..|+.|.++ ++.+.+|..|-..-||+.++
T Consensus 47 yP~~P~kGqayRCIrIn--~~~Dp~l~~Aa~~sGl~~~~ 83 (108)
T smart00099 47 YPEKPYKGSGFRCIRIN--QKVDPVIEQACKESGLDIDD 83 (108)
T ss_pred CCCCCCCCcceEEEEEC--CcCCHHHHHHHHHhCCCHHH
Confidence 88888999999999997 89999999999999998543
No 48
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=38.21 E-value=28 Score=20.00 Aligned_cols=16 Identities=50% Similarity=0.924 Sum_probs=10.6
Q ss_pred hHHHHHHHHHhhhccc
Q psy5450 3 RRRQQKLEQKLQQFRS 18 (133)
Q Consensus 3 ~rr~q~~~~k~~~~r~ 18 (133)
|||...|..||+++|.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4555568899999863
No 49
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=36.93 E-value=46 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHhCCCcCCCCceEEEE
Q psy5450 51 DNATQVVKEMLAKYGLTREDAHQYCLVQ 78 (133)
Q Consensus 51 sta~~vV~eaLekyGL~~e~~~~y~Lve 78 (133)
.|.++.|..|+..+|+..+.. +|..++
T Consensus 5 kt~eeAi~~A~~~l~~~~~~~-~~eVi~ 31 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPREEL-EYEVIE 31 (52)
T ss_dssp SSHHHHHHHHHHHTT--GGGE-EEEEEE
T ss_pred CCHHHHHHHHHHHhCCChHHE-EEEEEE
Confidence 588999999999999987554 444444
No 50
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=36.74 E-value=85 Score=20.31 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=32.6
Q ss_pred EEEeCC-ccCCCCCeEEEEecCC-CCHHHHHHHHHHHhCCCcCCCCceEEEEEec
Q psy5450 29 LKIYGE-SLCRDVPYKTLLLSVR-DNATQVVKEMLAKYGLTREDAHQYCLVQVNT 81 (133)
Q Consensus 29 LKIYg~-~L~~g~~YksIlvt~~-sta~~vV~eaLekyGL~~e~~~~y~LveV~~ 81 (133)
++.||. .-..|....++-+... +|.++++....++|. +-.+...++.+-|..
T Consensus 3 V~~fa~lr~~~g~~~~~~~~~~~~~tv~~L~~~L~~~~p-~l~~~~~~~~v~vn~ 56 (80)
T TIGR01682 3 VLYFARLREQAGTDEETLELPDESTTVGELKEHLAKEGP-ELAASRGQVMVAVNE 56 (80)
T ss_pred EEEeHHHHHHhCCCeEEEECCCCCcCHHHHHHHHHHhCc-hhhhhccceEEEECC
Confidence 566665 1234555667777776 899999999999996 111122445555533
No 51
>COG1604 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=31.48 E-value=67 Score=26.64 Aligned_cols=44 Identities=30% Similarity=0.550 Sum_probs=36.6
Q ss_pred cCCCCCeEEEEecCC-----CCHHHHHHHHHHHhCCCcCCCCceEEEEE
Q psy5450 36 LCRDVPYKTLLLSVR-----DNATQVVKEMLAKYGLTREDAHQYCLVQV 79 (133)
Q Consensus 36 L~~g~~YksIlvt~~-----sta~~vV~eaLekyGL~~e~~~~y~LveV 79 (133)
+.+|+-+.+++++.+ ..|..++.+++++||+-....-.|...|+
T Consensus 206 V~~gv~f~~~l~~~~~~~~~~~~~~l~~~~v~~~G~GaKTs~GYG~fe~ 254 (257)
T COG1604 206 VSKGVRFRTVLASDRYGELSNKALKLLKEAVTRYGLGAKTSAGYGRFEV 254 (257)
T ss_pred ecCCcEEEEEEEecccchhHHHHHHHHHHHHHHhCcCcccccccccccc
Confidence 567888999999877 46788999999999998777778877776
No 52
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=31.40 E-value=9.4 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.488 Sum_probs=16.1
Q ss_pred CceEEEeCCccCCCCCeEEEEecCCCC
Q psy5450 26 GGTLKIYGESLCRDVPYKTLLLSVRDN 52 (133)
Q Consensus 26 ~g~LKIYg~~L~~g~~YksIlvt~~st 52 (133)
.|.+||||-.+|...=..+++++..+|
T Consensus 36 nG~mri~gpktCsN~w~gTfPIN~~tt 62 (62)
T PF08300_consen 36 NGSMRIYGPKTCSNYWHGTFPINAYTT 62 (62)
T ss_dssp TTEEEEE--TTSHHHHHT-B--STT-B
T ss_pred CCeEEEecChhhhcccCCcCccccccC
Confidence 378999999999877777777766543
No 53
>PF00666 Cathelicidins: Cathelicidin; InterPro: IPR001894 The precursor sequences of a number of antimicrobial peptides secreted by neutrophils (polymorphonuclear leukocytes) upon activation have been found to be evolutionarily related and are collectively known as cathelicidins []. Structurally, these proteins consist of three domains: a signal sequence, a conserved region of about 100 residues that contains four cysteines involved in two disulphide bonds, and a highly divergent C-terminal section of variable size. It is in this C-terminal section that the antibacterial peptides are found; they are proteolytically processed from their precursor by enzymes such as elastase. This structure is shown in the following schematic representation: +---+--------------------------------+--------------------+ |Sig| Propeptide C C C C | Antibacterial pep. | +---+----------------|--|--|--|------+--------------------+ | | | | +--+ +--+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0006952 defense response, 0005576 extracellular region; PDB: 1KWI_A 1PFP_A 1LXE_A 1N5P_A 1N5H_A.
Probab=31.40 E-value=40 Score=22.37 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 54 TQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 54 ~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
+++|..|+.-|+-......-|.|.+....
T Consensus 5 ~eav~~Av~~yN~~s~~~nlfRLLe~~p~ 33 (67)
T PF00666_consen 5 EEAVLRAVDFYNQGSSGENLFRLLELDPP 33 (67)
T ss_dssp HHHHHHHHHHHHHCS-SSEEEEEEEE---
T ss_pred HHHHHHHHHHHhcCCCccCceeeeeccCC
Confidence 68899999999998888999999999765
No 54
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=30.12 E-value=33 Score=24.91 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=34.6
Q ss_pred HHHHHHhhhccccCCCCCCCceEEEeCCccCCCCCeEEEEecCCCCHHHHHHHHHHHhCCCc
Q psy5450 7 QKLEQKLQQFRSKDGGPDTGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTR 68 (133)
Q Consensus 7 q~~~~k~~~~r~~d~~p~~~g~LKIYg~~L~~g~~YksIlvt~~sta~~vV~eaLekyGL~~ 68 (133)
++|++-|.. |++.- + |++.-..|..|+.|.++.....+.+|..|-..-|++-
T Consensus 32 ~~L~~~L~~-ry~~H-----W----~P~~P~kGsayRcIrin~~~~~Dp~l~~Aa~~sgl~~ 83 (118)
T PF07742_consen 32 EELENLLCE-RYKGH-----W----YPENPSKGSAYRCIRINPGHKMDPVLEQAAKESGLSY 83 (118)
T ss_dssp HHHHHHHHH-HHTTS-----------TTSTTTTHHHH-EEES--SSB-HHHHHHHHHTT--H
T ss_pred HHHHHHHHH-HHhCC-----C----CCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHhCCCH
Confidence 456666655 44321 2 8888889999999999999999999999999999874
No 55
>PF13783 DUF4177: Domain of unknown function (DUF4177)
Probab=29.38 E-value=1.2e+02 Score=18.84 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=26.7
Q ss_pred CeEEEEecCCCC---HHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 41 PYKTLLLSVRDN---ATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 41 ~YksIlvt~~st---a~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
-||.|.+...-. ..+-++++|..|| .+-..||++...
T Consensus 3 EYk~v~~~~~~~~~~~~~~~~~~Ln~~g-----~eGWeLV~~~~~ 42 (61)
T PF13783_consen 3 EYKVVEVPTGGFFGIDPEDLEEILNEYG-----KEGWELVSIIPP 42 (61)
T ss_pred ceEEEEEecccccCCCHHHHHHHHHHHH-----hCCcEEEEEEcC
Confidence 377777766422 3466799999998 556899998764
No 56
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=29.05 E-value=69 Score=23.70 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEE
Q psy5450 41 PYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV 79 (133)
Q Consensus 41 ~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV 79 (133)
.=|+|-++..++...++..+|+++|++ ++++.++.+
T Consensus 92 kGK~i~v~~~s~~~~~~~~~l~~~g~~---~~~v~~v~~ 127 (216)
T PF09084_consen 92 KGKKIGVSRGSSSEYFLRALLKKNGID---PDDVKIVNL 127 (216)
T ss_dssp TTSEEEESTTSHHHHHHHHHHHHTTT----GGGSEEEES
T ss_pred CCCEEEEecCcchhHHHHHHHHHhccc---cccceeeee
Confidence 447888999888888999999999995 456677665
No 57
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=28.00 E-value=1.2e+02 Score=20.93 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=26.4
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEE
Q psy5450 45 LLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV 79 (133)
Q Consensus 45 Ilvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV 79 (133)
+.+.+.....+++.++..|+|++.+-.+.|.|.=+
T Consensus 15 f~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 15 FRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred EEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 34455788999999999999998765556666544
No 58
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=27.51 E-value=1.1e+02 Score=20.69 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=28.8
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEE
Q psy5450 40 VPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCL 76 (133)
Q Consensus 40 ~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~L 76 (133)
...-+|-+-+--|+.+.+..||.+=||..|.+.-|.+
T Consensus 9 qQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~ 45 (74)
T cd01816 9 KQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRL 45 (74)
T ss_pred CCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEc
Confidence 3456777888899999999999999999865444433
No 59
>KOG0113|consensus
Probab=26.86 E-value=67 Score=27.50 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=25.4
Q ss_pred CCCCCeEEEEec--CCCCHHHHHHHHHHHhCC
Q psy5450 37 CRDVPYKTLLLS--VRDNATQVVKEMLAKYGL 66 (133)
Q Consensus 37 ~~g~~YksIlvt--~~sta~~vV~eaLekyGL 66 (133)
..|.|||||-|. .-+|.+.-|++.+++||-
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~ 127 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGP 127 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCc
Confidence 467899999976 567888889999999995
No 60
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=26.60 E-value=46 Score=21.87 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHhCCCcCCCCceEEEEEecC
Q psy5450 50 RDNATQVVKEMLAKYGLTREDAHQYCLVQVNTA 82 (133)
Q Consensus 50 ~sta~~vV~eaLekyGL~~e~~~~y~LveV~~~ 82 (133)
+....+++..||.+|+-...+...|.|.+|+..
T Consensus 10 dp~v~~~~~~al~~~N~~~~~~~~~~~~~v~~a 42 (94)
T PF00031_consen 10 DPEVQEAAEFALDKFNEQSNSGYKFKLVKVISA 42 (94)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhCcccCcceeeeeeEE
Confidence 445688999999999987777888999998664
No 61
>KOG0904|consensus
Probab=25.68 E-value=1.6e+02 Score=28.99 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=37.1
Q ss_pred ceEEEeCCccCCCC------CeEEEEecCCCCHHHHHHHHHHHhCC------CcCCCCceEEEEEec
Q psy5450 27 GTLKIYGESLCRDV------PYKTLLLSVRDNATQVVKEMLAKYGL------TREDAHQYCLVQVNT 81 (133)
Q Consensus 27 g~LKIYg~~L~~g~------~YksIlvt~~sta~~vV~eaLekyGL------~~e~~~~y~LveV~~ 81 (133)
..-|++++.|..-+ .--+|-|+.++|...|+..+|.|-.- +.+.+++|.| +|++
T Consensus 199 l~~kl~~~~l~vvv~~~n~~~~fti~vn~~dtP~sl~~~~l~Km~k~~~~~~~~~~~~dyvL-qV~G 264 (1076)
T KOG0904|consen 199 LEKKLPNRKLLVVVHFENDQQKFTIKVNPDDTPGSLLESFLQKMAKSLMDIPDSESPEDYVL-QVCG 264 (1076)
T ss_pred HHhhCcCceEEEEEeccCcceeEEEEeCCCCChHHHHHHHHHHHHHHhhcCcccCCCcceEE-EecC
Confidence 45677777654222 33489999999999999999987654 3555667765 4533
No 62
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.66 E-value=2.1e+02 Score=22.87 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=26.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEec
Q psy5450 43 KTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT 81 (133)
Q Consensus 43 ksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~ 81 (133)
-++.|..+++..+++..+.++.|++.. ....|.|.+.
T Consensus 87 Gh~~v~~~~~v~~l~~~i~~~~g~p~~--t~l~lyEEi~ 123 (249)
T PF12436_consen 87 GHVYVPKNDKVSELVPLINERAGLPPD--TPLLLYEEIK 123 (249)
T ss_dssp EEEEEETT-BGGGTHHHHHHHHT--TT----EEEEEEEE
T ss_pred eEEEECCCCCHHHHHHHHHHHcCCCCC--CceEEEEEec
Confidence 357889999999999999999999753 4567777755
No 63
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=23.39 E-value=1.3e+02 Score=20.14 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=19.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcC
Q psy5450 43 KTLLLSVRDNATQVVKEMLAKYGLTRE 69 (133)
Q Consensus 43 ksIlvt~~sta~~vV~eaLekyGL~~e 69 (133)
+-|-+++.+|..++...+.+.+++..+
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~ 42 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDS 42 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TT
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCc
Confidence 445688999999999999999987754
No 64
>PF15583 Imm41: Immunity protein 41
Probab=22.84 E-value=31 Score=26.61 Aligned_cols=40 Identities=10% Similarity=0.274 Sum_probs=33.6
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHhCCCcCCCCceEEEEEec
Q psy5450 39 DVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNT 81 (133)
Q Consensus 39 g~~YksIlvt~~sta~~vV~eaLekyGL~~e~~~~y~LveV~~ 81 (133)
+.+-+.|+++..+--.+.++.||+.|-. +|.+|-|.|.+.
T Consensus 101 ~~~~r~IrI~at~EE~~~~~~aL~dF~~---~p~~YdL~Em~d 140 (158)
T PF15583_consen 101 DEKDRNIRITATSEENTAINKALKDFAR---NPLEYDLSEMCD 140 (158)
T ss_pred CCcCceEEEecCHHHHHHHHHHHHHHHh---CHHhhhHHHhCC
Confidence 4567899999999999999999999954 578899888765
No 65
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=20.48 E-value=1.9e+02 Score=18.81 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=31.1
Q ss_pred EEEeCCc-cCCCCCeEEEEecCCCCHHHHHHHHHHHhCC-------CcCCCCceEEEEEec
Q psy5450 29 LKIYGES-LCRDVPYKTLLLSVRDNATQVVKEMLAKYGL-------TREDAHQYCLVQVNT 81 (133)
Q Consensus 29 LKIYg~~-L~~g~~YksIlvt~~sta~~vV~eaLekyGL-------~~e~~~~y~LveV~~ 81 (133)
++.||.- -..|..-.+|-+. .+|..++++.+.++|.- +......++.+-|..
T Consensus 3 V~~fa~lre~~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~ 62 (88)
T TIGR01687 3 VKYFATLRDITGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNG 62 (88)
T ss_pred EEEEhHHHHHhCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECC
Confidence 5555541 1133344556565 89999999999999852 111234566666644
No 66
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=20.07 E-value=55 Score=26.55 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=11.3
Q ss_pred CCCceEEEeCCccCC
Q psy5450 24 DTGGTLKIYGESLCR 38 (133)
Q Consensus 24 ~~~g~LKIYg~~L~~ 38 (133)
..+|.+||||+.|-+
T Consensus 164 ~e~~~lk~YGAGiLS 178 (228)
T cd03348 164 QEPGGLRIYGAGILS 178 (228)
T ss_pred ccCCceeEeccchhc
Confidence 446779999998743
Done!