RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5450
(133 letters)
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 103
Score = 91.9 bits (228), Expect = 5e-26
Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 25 TGGTLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIP 84
+GGTL+IY +SL ++PYKT+LLS D A V E L KYGL +E+ YC+ +V
Sbjct: 1 SGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVML--- 57
Query: 85 ETPNTAQQNGGDQFMNNQREYILDEDECPLAILMNHPQSRESRTIQFK 132
+E ILD+DECPL I P + Q K
Sbjct: 58 ------PPGAQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLK 99
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 109
Score = 74.5 bits (183), Expect = 5e-19
Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 28 TLKIYGESLCRDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETP 87
T ++ + P+ ++ A Q+++++L + Y L++ I
Sbjct: 8 THRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEEKYFIS--- 64
Query: 88 NTAQQNGGDQFMNNQREYILDEDECPLAILMNHP 121
++ + + +E + IL +
Sbjct: 65 -----KEKNECRKQPFQRAIGPEEEIMQILSSWF 93
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 90
Score = 43.6 bits (103), Expect = 2e-07
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 42 YKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV-----NTAIPETPNT 89
YK++L++ +D A V+ +L K A ++ LVQ+ IP + N
Sbjct: 21 YKSILVTSQDKAPSVISRVLKKNNRDSAVASEFELVQLLPGDRELTIPHSANV 73
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor,
RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 87
Score = 39.3 bits (92), Expect = 8e-06
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 42 YKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV-----NTAIPETPN 88
YK++L++ +D A V+++ + K+ L ++ Y L+Q+ IPE N
Sbjct: 18 YKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENAN 69
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 38.2 bits (89), Expect = 3e-05
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 42 YKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQV-----NTAIPETPNT 89
YK+++L+ +D V++ ++K+ L + A +Y LVQV IP++ N
Sbjct: 18 YKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANV 70
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 27.7 bits (61), Expect = 0.35
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 59 EMLA-KYGLTREDAHQYCLVQVNTAI--PETPNTAQQNGGDQFMNNQREYILDEDECP 113
E +A ++ L+R++ + + N A + + + + +D DE
Sbjct: 162 ENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYI 219
>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga
maritima [TaxId: 2336]}
Length = 283
Score = 28.0 bits (62), Expect = 0.35
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 51 DNATQVVKEML----AKYGLTREDAHQYCLVQVNTAIPE 85
+ +V +E + + + DA+ + V+ I +
Sbjct: 227 EALKEVTRETVWFIQRRKTIPFTDAYMLASLSVDVGISQ 265
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 26.5 bits (58), Expect = 0.71
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 38 RDVPYKTLLLSVRDNATQVVKEMLAKYGLTREDAHQYCLVQVNTAIPETPNTAQQNGGDQ 97
+ VP + + +KE+ ++G D Y + I + + + D
Sbjct: 36 KRVP------ATMEPLAPALKELAGEHGWDASDLDFYIVHAGGPRILD--DLSTFLEVDP 87
Query: 98 FMNNQREYILDEDECPLA 115
L E +
Sbjct: 88 HAFRFSRATLTEYGNIAS 105
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 24.9 bits (54), Expect = 2.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 2 RRRRQQKLEQKLQQFRSK 19
RR ++LE ++FR K
Sbjct: 5 EIRRLERLEHLAEKFRQK 22
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 101
Score = 24.4 bits (53), Expect = 3.3
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 54 TQVVKEMLAKYGLTREDAHQYCLVQVNTA 82
+ ++ E + GL A + VN
Sbjct: 57 SALLNECHKQGGLRLAQARALIKIDVNKT 85
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 344
Score = 24.7 bits (53), Expect = 4.3
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 51 DNATQVVKEMLAKYGLTREDAH 72
+N +++ ++L K+G+ EDA
Sbjct: 6 ENEKKLIIDVLKKFGVPEEDAK 27
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus
subtilis [TaxId: 1423]}
Length = 161
Score = 23.5 bits (51), Expect = 8.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 50 RDNATQVVKEMLAKYGLTRED 70
+ + K+ML K G+ ED
Sbjct: 3 MNEMVDITKDMLNKRGVMIED 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,219
Number of extensions: 17758
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 15
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.7 bits)