BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5451
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIE----KFRPDMRMLSVPEYALYE 146
F+G+ + Q Q V T+ +++A A+ +A ++ + FRPDM + VP
Sbjct: 162 FYGINKG--QVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV--- 216
Query: 147 IHENGDE 153
IH +GD+
Sbjct: 217 IHGDGDQ 223
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIE----KFRPDMRMLSVPEYALYE 146
F+G+ + Q Q V T+ +++A A+ +A ++ + FRPDM + VP
Sbjct: 162 FYGINKG--QVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV--- 216
Query: 147 IHENGDE 153
IH +GD+
Sbjct: 217 IHGDGDQ 223
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIE----KFRPDMRMLSVPEYALYE 146
F+G+ + Q Q V T+ +++A A+ +A ++ + FRPDM + VP
Sbjct: 162 FYGINKG--QVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV--- 216
Query: 147 IHENGDE 153
IH +GD+
Sbjct: 217 IHGDGDQ 223
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIE----KFRPDMRMLSVPEYALYE 146
F+G+ + Q Q V T+ +++A A+ +A ++ + FRPDM + VP
Sbjct: 162 FYGINKG--QVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV--- 216
Query: 147 IHENGDE 153
IH +GD+
Sbjct: 217 IHGDGDQ 223
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIE----KFRPDMRMLSVPEYALYE 146
F+G+ + Q Q V T+ +++A A+ +A ++ + FRPDM + VP
Sbjct: 162 FYGINKG--QVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLV--- 216
Query: 147 IHENGDE 153
IH +GD+
Sbjct: 217 IHGDGDQ 223
>pdb|2ZCI|A Chain A, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|B Chain B, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|C Chain C, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|D Chain D, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
Length = 610
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENG 151
HG M SGQ A+ ++A + TL + P M ML Y E +N
Sbjct: 436 HGTMVGALLASGQTAAS----------AEAKVGTL--RHDP-MAMLPFIGYNAGEYLQNW 482
Query: 152 -DERKLGTDEKPLLVQLNWHKDDREGRFL 179
D G D+ P + +NW + +GRFL
Sbjct: 483 IDMGNKGGDKMPSIFLVNWFRRGEDGRFL 511
>pdb|3EC8|A Chain A, The Crystal Structure Of The Ra Domain Of Flj10324 (Radil)
Length = 166
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEI-HENG 151
GV++ + K + ++++ +++ +E++ D R +Y L ++ + G
Sbjct: 36 GVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAG--QYVLCDVVGQAG 93
Query: 152 DE---------RKLGTDEKPLLVQLNWHKDDREG---RFLLRR 182
D R G EKPLL+Q W REG RF LR+
Sbjct: 94 DAGQRWQARCFRVFGDSEKPLLIQELWKP--REGLSRRFELRK 134
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 17 VIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDL 55
VI+ A LS+ D ++ RLD+FE+ P D+L
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNL 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,554,444
Number of Sequences: 62578
Number of extensions: 213173
Number of successful extensions: 454
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 17
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)