BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5451
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QZQ1|AFAD_MOUSE Afadin OS=Mus musculus GN=Mllt4 PE=1 SV=3
Length = 1820
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 99/150 (66%), Gaps = 36/150 (24%)
Query: 38 WNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRF 97
WNANRLDLFE+S+P +DL F HGVMRF
Sbjct: 20 WNANRLDLFEISQPTEDLEF----------------------------------HGVMRF 45
Query: 98 YFQD-SGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKL 156
YFQD + ATKCIRV+S AT+Q VIETL EKFRPDMRMLS P+Y+LYE+H +G ER+L
Sbjct: 46 YFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSG-ERRL 104
Query: 157 GTDEKPLLVQLNWHKDDREGRFLLRRIDEA 186
DEKPL+VQLNW+KDDREGRF+L+ ++A
Sbjct: 105 DIDEKPLVVQLNWNKDDREGRFVLKNENDA 134
>sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=3
Length = 1824
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 99/150 (66%), Gaps = 36/150 (24%)
Query: 38 WNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRF 97
WNANRLDLFE+S+P +DL F HGVMRF
Sbjct: 20 WNANRLDLFEISQPTEDLEF----------------------------------HGVMRF 45
Query: 98 YFQD-SGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKL 156
YFQD + ATKCIRV+S AT+Q VIETL EKFRPDMRMLS P+Y+LYE+H +G ER+L
Sbjct: 46 YFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSG-ERRL 104
Query: 157 GTDEKPLLVQLNWHKDDREGRFLLRRIDEA 186
DEKPL+VQLNW+KDDREGRF+L+ ++A
Sbjct: 105 DIDEKPLVVQLNWNKDDREGRFVLKNENDA 134
>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1
Length = 1829
Score = 157 bits (397), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 99/150 (66%), Gaps = 36/150 (24%)
Query: 38 WNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRF 97
WNANRLDLFE+S+P +DL F HGVMRF
Sbjct: 20 WNANRLDLFEISQPTEDLEF----------------------------------HGVMRF 45
Query: 98 YFQD-SGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKL 156
YFQD + ATKCIRV+S AT+Q VIETL EKFRPDMRMLS P+Y+LYE+H +G ER+L
Sbjct: 46 YFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSG-ERRL 104
Query: 157 GTDEKPLLVQLNWHKDDREGRFLLRRIDEA 186
DEKPL+VQLNW+KDDREGRF+L+ ++A
Sbjct: 105 DIDEKPLVVQLNWNKDDREGRFVLKNENDA 134
>sp|Q8CB96|RASF4_MOUSE Ras association domain-containing protein 4 OS=Mus musculus
GN=Rassf4 PE=2 SV=1
Length = 322
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
+RV S T+Q V+ L+ KFR + E+ALY +HE+G++ KL E PL+ ++
Sbjct: 192 VRVNSTMTTQQVLTLLLNKFRVED---GPSEFALYTVHESGEQTKLKDCEYPLISRI 245
>sp|Q566C5|RASF4_RAT Ras association domain-containing protein 4 OS=Rattus norvegicus
GN=Rassf4 PE=2 SV=1
Length = 322
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
+RV S T+Q V+ L+ KFR + E+ALY +HE+G++ KL E PL+ ++
Sbjct: 192 VRVNSTMTTQQVLTLLLNKFRVED---GPSEFALYTVHESGEQTKLKDCEYPLISRI 245
>sp|Q3B7D5|RASF2_RAT Ras association domain-containing protein 2 OS=Rattus norvegicus
GN=Rassf2 PE=2 SV=1
Length = 326
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
+R+ S T+ V++ L+ KF+ + S E+ALY +H +G+++KL + PL+ ++
Sbjct: 193 VRINSTMTTPQVLKLLLNKFKIEN---SAEEFALYVVHTSGEKQKLKNSDYPLIARI 246
>sp|P50749|RASF2_HUMAN Ras association domain-containing protein 2 OS=Homo sapiens
GN=RASSF2 PE=1 SV=1
Length = 326
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
+R+ S T+ V++ L+ KF+ + S E+ALY +H +G+++KL + PL+ ++
Sbjct: 193 VRINSTMTTPQVLKLLLNKFKIEN---SAEEFALYVVHTSGEKQKLKATDYPLIARI 246
>sp|Q8BMS9|RASF2_MOUSE Ras association domain-containing protein 2 OS=Mus musculus
GN=Rassf2 PE=2 SV=1
Length = 326
Score = 37.4 bits (85), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
+R+ S T+ V++ L+ KF+ + S E+ALY +H +G++++L + + PL+ ++
Sbjct: 193 VRINSTMTTPQVLKLLLNKFKIEN---SAEEFALYVVHTSGEKQRLKSSDYPLIARI 246
>sp|Q6ZTQ3|RASF6_HUMAN Ras association domain-containing protein 6 OS=Homo sapiens
GN=RASSF6 PE=1 SV=1
Length = 369
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWH 170
+RV S+ ++ VI+ L++KF+ + S ++AL+ I G++R+L + PLL +L
Sbjct: 235 VRVNSNMRTEEVIKQLLQKFKIEN---SPQDFALHIIFATGEQRRLKKTDIPLLQRLLQG 291
Query: 171 KDDREGRFLL 180
++ R L
Sbjct: 292 PSEKNARIFL 301
>sp|Q82DI5|CH601_STRAW 60 kDa chaperonin 1 OS=Streptomyces avermitilis (strain ATCC 31267
/ DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=groL1 PE=3 SV=3
Length = 542
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 70 QKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEK 129
++VATK +A D T+ A +L ++R ++ + ++ DA +AV E L+
Sbjct: 74 KEVATKTNDIAGDGTTTATVLAQALVREGLKNVAAGASPALLKKGIDAAVKAVSEELLAT 133
Query: 130 FRP 132
RP
Sbjct: 134 ARP 136
>sp|Q4QR82|RASF6_RAT Ras association domain-containing protein 6 OS=Rattus norvegicus
GN=Rassf6 PE=2 SV=1
Length = 341
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWH 170
+R S ++ VI+ L++KF+ + S ++ALY I G++RKL + PLL +L
Sbjct: 207 VRANSIMKTEEVIKQLLQKFKIEN---SPRDFALYIIFGTGEKRKLKKTDVPLLQRLIQG 263
Query: 171 KDDREGRFLL 180
R L
Sbjct: 264 PSKSNARIFL 273
>sp|Q80UQ2|RASF6_MOUSE Ras association domain-containing protein 6 OS=Mus musculus
GN=Rassf6 PE=1 SV=1
Length = 353
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
+R S ++ VI+ L++KF+ + S ++ALY I G++RKL + PLL +L
Sbjct: 219 VRANSIMRTEEVIKQLLQKFKIEN---SPRDFALYIIFGTGEQRKLKKTDVPLLQRL 272
>sp|Q69Z89|RADIL_MOUSE Ras-associating and dilute domain-containing protein OS=Mus
musculus GN=Radil PE=1 SV=2
Length = 1099
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 73 ATKCIRVASDATSQ--ADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKF 130
+T C ASD S+ L GV++ + K + +++Q +++ +E++
Sbjct: 70 STFCSLGASDDPSELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGSSSAQELVKEALERY 129
Query: 131 RPDMRMLSVPEYALYEI-HENGDE---------RKLGTDEKPLLVQLNWHKDDREG---R 177
D +Y L ++ + GD R G +EKPLL+Q W REG R
Sbjct: 130 ALDPECAG--QYVLCDVVGQAGDSGQRWQAQCFRVFGDNEKPLLIQELWKP--REGLSRR 185
Query: 178 FLLRR 182
F LR+
Sbjct: 186 FELRK 190
>sp|Q99MK9|RASF1_MOUSE Ras association domain-containing protein 1 OS=Mus musculus
GN=Rassf1 PE=2 SV=1
Length = 340
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 105 KVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDE---RKLGTDEK 161
K A K + V S ++ VIE L+ KF M + ++AL+E E + RKL DE+
Sbjct: 208 KDAIKHLHVLSRTRAREVIEALLRKF---MVVDDPRKFALFERTERHGQVYLRKLSDDEQ 264
Query: 162 PLLVQLNWHKDDREGRFLLRRIDEA 186
PL ++L ++ F+L+ D
Sbjct: 265 PLKLRLLAGPSEKALSFVLKENDSG 289
>sp|Q9H2L5|RASF4_HUMAN Ras association domain-containing protein 4 OS=Homo sapiens
GN=RASSF4 PE=1 SV=2
Length = 321
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 141 EYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNV 189
E+ALY +HE+G+ KL E PL+ ++ ++ R L D V
Sbjct: 218 EFALYIVHESGERTKLKDCEYPLISRILHGPCEKIARIFLMEADLGVEV 266
>sp|A8XFM8|LONM_CAEBR Lon protease homolog, mitochondrial OS=Caenorhabditis briggsae
GN=CBG12802 PE=3 SV=3
Length = 960
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 96 RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHE 149
R Y + KV K + + D + T+IEK M+ L+VPEYAL I+E
Sbjct: 374 RKYLLNEQLKVIKKELGIEKDEKT-----TIIEKIDERMKTLAVPEYALKVINE 422
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,126,947
Number of Sequences: 539616
Number of extensions: 2679500
Number of successful extensions: 6138
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6104
Number of HSP's gapped (non-prelim): 36
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)