Query psy5451
Match_columns 197
No_of_seqs 70 out of 72
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 17:53:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01782 AF6_RA_repeat1 Ubiquit 100.0 3.3E-61 7.1E-66 377.7 11.5 112 21-183 1-112 (112)
2 KOG1892|consensus 100.0 2.7E-59 5.9E-64 460.4 11.0 133 4-188 3-135 (1629)
3 cd01778 RASSF1_RA Ubiquitin-li 100.0 3.1E-29 6.7E-34 192.6 8.2 78 104-184 14-94 (96)
4 cd01784 rasfadin_RA Ubiquitin- 99.9 5.3E-27 1.2E-31 178.0 6.7 75 107-184 13-87 (87)
5 KOG4239|consensus 99.8 4.2E-20 9E-25 166.7 4.0 122 52-184 156-291 (348)
6 smart00314 RA Ras association 99.8 1.7E-18 3.7E-23 124.4 8.6 88 93-184 3-90 (90)
7 PF00788 RA: Ras association ( 99.8 1.2E-18 2.5E-23 122.6 6.2 91 92-185 2-93 (93)
8 cd01768 RA RA (Ras-associating 99.8 1.6E-18 3.5E-23 123.5 6.4 85 95-183 2-87 (87)
9 cd01782 AF6_RA_repeat1 Ubiquit 99.5 8.2E-15 1.8E-19 116.0 5.1 78 32-146 12-94 (112)
10 KOG1892|consensus 99.4 4.6E-14 1E-18 141.9 1.2 75 34-146 33-112 (1629)
11 cd01781 AF6_RA_repeat2 Ubiquit 98.6 6.1E-08 1.3E-12 75.5 6.2 85 93-182 2-99 (100)
12 cd01783 DAGK_delta_RA Ubiquiti 98.2 2.6E-06 5.6E-11 66.2 5.6 76 105-182 15-96 (97)
13 cd01787 GRB7_RA RA (RAS-associ 98.1 4.3E-06 9.3E-11 63.7 5.1 80 95-183 5-85 (85)
14 cd01776 Rin1_RA Ubiquitin doma 97.7 0.00015 3.2E-09 56.0 6.9 82 95-181 2-85 (87)
15 cd01779 Myosin_IXb_RA ubitquit 97.7 0.00031 6.7E-09 55.7 8.6 82 97-182 15-104 (105)
16 cd01775 CYR1_RA Ubiquitin doma 97.0 0.0017 3.7E-08 50.9 5.6 48 114-166 20-67 (97)
17 cd01786 STE50_RA Ubiquitin-lik 97.0 0.00055 1.2E-08 53.8 2.7 72 108-182 26-97 (98)
18 cd01780 PLC_epsilon_RA Ubiquit 96.9 0.0012 2.5E-08 51.6 4.2 72 104-182 12-92 (93)
19 cd01777 SNX27_RA Ubiquitin dom 96.5 0.0032 6.9E-08 48.4 3.5 55 110-166 15-71 (87)
20 cd01778 RASSF1_RA Ubiquitin-li 95.9 0.015 3.3E-07 45.4 4.6 55 71-146 15-75 (96)
21 cd01785 PDZ_GEF_RA Ubiquitin-l 95.7 0.024 5.1E-07 43.8 5.0 69 107-183 13-85 (85)
22 KOG1574|consensus 95.6 0.0081 1.8E-07 56.2 2.7 66 113-185 22-87 (375)
23 KOG3751|consensus 95.2 0.017 3.6E-07 56.8 3.4 91 93-192 189-280 (622)
24 smart00295 B41 Band 4.1 homolo 95.2 0.085 1.8E-06 41.3 6.8 46 108-157 15-61 (207)
25 PF00788 RA: Ras association ( 94.5 0.035 7.6E-07 38.8 2.8 33 58-90 2-34 (93)
26 cd00153 RalGDS_RA Ubiquitin do 93.3 0.82 1.8E-05 35.6 8.3 70 107-182 17-86 (87)
27 cd00196 UBQ Ubiquitin-like pro 93.2 0.16 3.5E-06 29.8 3.6 38 107-149 8-45 (69)
28 smart00314 RA Ras association 92.2 0.13 2.8E-06 36.9 2.5 33 57-90 1-33 (90)
29 cd01768 RA RA (Ras-associating 91.9 0.11 2.4E-06 36.9 1.9 30 60-90 1-30 (87)
30 PF14847 Ras_bdg_2: Ras-bindin 85.9 2.1 4.5E-05 33.6 5.2 68 107-180 11-83 (105)
31 KOG3542|consensus 84.9 0.62 1.3E-05 48.1 2.4 83 94-188 760-846 (1283)
32 PF09379 FERM_N: FERM N-termin 84.5 5.2 0.00011 27.6 6.2 58 107-169 7-65 (80)
33 KOG2320|consensus 83.1 1.9 4.1E-05 43.3 4.8 87 96-187 546-634 (651)
34 smart00213 UBQ Ubiquitin homol 74.1 8.4 0.00018 24.7 4.3 34 95-131 1-34 (64)
35 cd01784 rasfadin_RA Ubiquitin- 74.0 3 6.5E-05 32.4 2.5 50 74-146 14-68 (87)
36 TIGR01624 LRP1_Cterm LRP1 C-te 70.1 3 6.5E-05 29.7 1.6 17 74-90 12-29 (50)
37 PF08825 E2_bind: E2 binding d 69.4 5.1 0.00011 30.1 2.8 39 111-149 1-41 (84)
38 cd06408 PB1_NoxR The PB1 domai 68.4 17 0.00038 27.8 5.6 52 95-158 5-56 (86)
39 cd06406 PB1_P67 A PB1 domain i 66.1 11 0.00024 28.6 4.1 33 94-132 4-36 (80)
40 KOG3784|consensus 66.1 13 0.00029 35.7 5.4 64 94-163 108-177 (407)
41 KOG1117|consensus 61.0 8.8 0.00019 40.7 3.5 77 108-186 941-1018(1186)
42 cd01807 GDX_N ubiquitin-like d 59.2 23 0.00051 24.5 4.4 44 95-145 1-44 (74)
43 cd01802 AN1_N ubiquitin-like d 56.3 25 0.00054 26.8 4.5 48 91-145 24-71 (103)
44 PF04798 Baculo_19: Baculoviru 56.1 18 0.0004 30.4 4.0 83 26-132 26-111 (146)
45 PTZ00044 ubiquitin; Provisiona 55.4 27 0.0006 23.9 4.3 35 95-131 1-35 (76)
46 cd01760 RBD Ubiquitin-like dom 53.2 44 0.00094 24.5 5.2 40 107-151 10-49 (72)
47 cd01792 ISG15_repeat1 ISG15 ub 51.0 58 0.0013 23.1 5.5 58 95-163 3-60 (80)
48 cd05992 PB1 The PB1 domain is 49.1 69 0.0015 21.9 5.5 47 108-159 11-58 (81)
49 cd06407 PB1_NLP A PB1 domain i 48.5 59 0.0013 24.1 5.3 45 108-156 11-55 (82)
50 cd01799 Hoil1_N Ubiquitin-like 47.0 46 0.00099 24.0 4.4 25 108-132 14-38 (75)
51 cd01789 Alp11_N Ubiquitin-like 47.0 55 0.0012 23.8 4.9 48 111-163 17-65 (84)
52 cd01804 midnolin_N Ubiquitin-l 45.8 47 0.001 23.6 4.3 35 95-131 2-36 (78)
53 PF05142 DUF702: Domain of unk 44.9 13 0.00028 31.5 1.5 18 73-90 113-130 (154)
54 KOG3629|consensus 44.8 49 0.0011 33.7 5.6 81 96-184 613-693 (728)
55 cd01803 Ubiquitin Ubiquitin. U 44.5 60 0.0013 21.8 4.5 35 95-131 1-35 (76)
56 PF05422 SIN1: Stress-activate 43.3 7.9 0.00017 37.8 0.0 57 96-152 209-269 (523)
57 cd01806 Nedd8 Nebb8-like ubiq 43.0 63 0.0014 21.7 4.4 35 95-131 1-35 (76)
58 cd01793 Fubi Fubi ubiquitin-li 41.3 63 0.0014 22.4 4.3 33 95-131 1-33 (74)
59 cd01805 RAD23_N Ubiquitin-like 41.1 68 0.0015 21.9 4.4 36 95-132 1-36 (77)
60 PF14533 USP7_C2: Ubiquitin-sp 39.7 83 0.0018 26.6 5.6 62 94-157 20-82 (213)
61 PF00564 PB1: PB1 domain; Int 38.1 71 0.0015 22.0 4.2 45 110-159 15-59 (84)
62 PF00638 Ran_BP1: RanBP1 domai 35.0 1.1E+02 0.0024 23.0 5.1 94 25-125 16-115 (122)
63 PF02192 PI3K_p85B: PI3-kinase 34.6 2E+02 0.0043 21.6 6.5 52 110-161 3-57 (78)
64 cd01809 Scythe_N Ubiquitin-lik 33.9 1.1E+02 0.0023 20.3 4.4 35 95-131 1-35 (72)
65 cd01812 BAG1_N Ubiquitin-like 33.6 98 0.0021 20.6 4.2 33 96-131 2-34 (71)
66 cd01791 Ubl5 UBL5 ubiquitin-li 32.6 1.2E+02 0.0026 21.7 4.7 34 95-131 2-36 (73)
67 COG1901 Uncharacterized conser 32.5 90 0.0019 27.6 4.7 83 71-166 60-150 (197)
68 smart00143 PI3K_p85B PI3-kinas 31.6 75 0.0016 24.0 3.6 54 110-163 3-59 (78)
69 PF15454 LAMTOR: Late endosoma 29.5 47 0.001 24.2 2.2 31 7-38 35-65 (76)
70 cd01797 NIRF_N amino-terminal 29.3 1.1E+02 0.0024 21.9 4.1 36 95-131 1-37 (78)
71 cd01808 hPLIC_N Ubiquitin-like 29.2 1.4E+02 0.003 20.4 4.4 33 97-132 3-35 (71)
72 PF13898 DUF4205: Domain of un 29.0 34 0.00074 31.6 1.7 62 91-164 207-273 (342)
73 PF11543 UN_NPL4: Nuclear pore 28.9 99 0.0022 22.7 3.9 35 107-146 14-48 (80)
74 KOG4777|consensus 28.2 2E+02 0.0044 27.3 6.5 61 101-166 248-310 (361)
75 PF11470 TUG-UBL1: GLUT4 regul 27.5 83 0.0018 22.7 3.1 34 107-145 7-40 (65)
76 PF02196 RBD: Raf-like Ras-bin 25.6 1.6E+02 0.0035 21.0 4.4 35 109-148 13-47 (71)
77 PF00794 PI3K_rbd: PI3-kinase 24.3 1E+02 0.0022 23.0 3.2 54 106-163 27-81 (106)
78 smart00455 RBD Raf-like Ras-bi 22.1 1.3E+02 0.0029 21.5 3.4 34 109-147 12-45 (70)
79 PF11976 Rad60-SLD: Ubiquitin- 22.1 2.4E+02 0.0052 19.0 4.5 36 95-132 1-36 (72)
80 COG2066 GlsA Glutaminase [Amin 21.4 1.5E+02 0.0032 27.8 4.3 51 116-166 3-65 (309)
81 PF15583 Imm41: Immunity prote 20.8 38 0.00083 28.9 0.4 56 89-151 86-142 (158)
82 smart00160 RanBD Ran-binding d 20.2 4.3E+02 0.0094 20.7 6.6 93 25-123 26-124 (130)
No 1
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=100.00 E-value=3.3e-61 Score=377.74 Aligned_cols=112 Identities=77% Similarity=1.263 Sum_probs=109.1
Q ss_pred hhccccccccccCCCccccccccceeeccCCCCccccceeEEEEEecccccccceeeEecccccccchheeccceeeeee
Q psy5451 21 WNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQ 100 (197)
Q Consensus 21 wn~~rldlf~l~~~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~lF~Gvmr~~~~ 100 (197)
|||||||||+ ||+|++|||||||||||||
T Consensus 1 wn~~rldlf~-----------------~s~p~e~lef~gvmrf~~q---------------------------------- 29 (112)
T cd01782 1 WNANRLDLFH-----------------LSYPTEDLEFHGVMRFYFQ---------------------------------- 29 (112)
T ss_pred CCccccceEe-----------------ecCCCcccEEeeEEEEEEE----------------------------------
Confidence 9999999999 9999999999999999999
Q ss_pred cCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEe
Q psy5451 101 DSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLL 180 (197)
Q Consensus 101 d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvL 180 (197)
|+|+|||||||||||+|||+|||++|++||+||+||+++|+||||++|++|++|||+++|+||++||+|||||+||||||
T Consensus 30 d~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~PL~~RL~w~~~dre~~FvL 109 (112)
T cd01782 30 DGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEKPLVVQLNWHKDDREGRFLL 109 (112)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCCCeEEeeccCCCCceeEEEe
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec
Q psy5451 181 RRI 183 (197)
Q Consensus 181 k~~ 183 (197)
|++
T Consensus 110 k~~ 112 (112)
T cd01782 110 KND 112 (112)
T ss_pred ccC
Confidence 974
No 2
>KOG1892|consensus
Probab=100.00 E-value=2.7e-59 Score=460.37 Aligned_cols=133 Identities=71% Similarity=1.172 Sum_probs=127.7
Q ss_pred ccccHHHHHHHHHHHHhhhccccccccccCCCccccccccceeeccCCCCccccceeEEEEEecccccccceeeEecccc
Q psy5451 4 VMKKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDA 83 (197)
Q Consensus 4 ~~~~~~~~~~l~~~i~~wn~~rldlf~l~~~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~ 83 (197)
+.++.+|||+|+.+|+||||||||||+ ||+|+||||||||||||||
T Consensus 3 ~~~~~~eRe~la~iiqqWNaNRLDLF~-----------------lS~PtEdLefhGVMRFYFQ----------------- 48 (1629)
T KOG1892|consen 3 AGGRDEEREKLADIIQQWNANRLDLFE-----------------LSQPTEDLEFHGVMRFYFQ----------------- 48 (1629)
T ss_pred CcchhhHHHHHHHHHHHhcccccceee-----------------ccCCCccceeeeeEEEEee-----------------
Confidence 467899999999999999999999999 9999999999999999999
Q ss_pred cccchheeccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCce
Q psy5451 84 TSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPL 163 (197)
Q Consensus 84 ~sqd~~lF~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PL 163 (197)
|.|+|||||||||+|++||++||++|.|||+|||||||+|+|||||||+||| |||.++|+||
T Consensus 49 -----------------Dag~kvaTKCiRVsStATt~dVidtL~EKFrPDmrMLS~p~YsLyEVH~nGE-RrL~~dEKPL 110 (1629)
T KOG1892|consen 49 -----------------DAGGKVATKCIRVSSTATTQDVIDTLAEKFRPDMRMLSSPKYSLYEVHVNGE-RRLDIDEKPL 110 (1629)
T ss_pred -----------------cccchhhhheeEecccccHHHHHHHHHHHhCcchhhhcCCCceeeeeecCcc-cccCcccCce
Confidence 6778888888888899999999999999999999999999999999999999 9999999999
Q ss_pred eeeeeccCCCceeeeEeeecCCCce
Q psy5451 164 LVQLNWHKDDREGRFLLRRIDEATN 188 (197)
Q Consensus 164 lvqL~wg~ddrEgrFvLk~~~~~~~ 188 (197)
+|||||++||||||||||+++++++
T Consensus 111 vVQLnWhkDDREGRFlLKn~~~~~~ 135 (1629)
T KOG1892|consen 111 VVQLNWHKDDREGRFLLKNENDAIP 135 (1629)
T ss_pred EEEeccccccccceeeeecccccCC
Confidence 9999999999999999999999875
No 3
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=99.96 E-value=3.1e-29 Score=192.61 Aligned_cols=78 Identities=33% Similarity=0.462 Sum_probs=72.1
Q ss_pred ceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE-EccCCCc--cccCCCCCceeeeeeccCCCceeeeEe
Q psy5451 104 QKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE-IHENGDE--RKLGTDEKPLLVQLNWHKDDREGRFLL 180 (197)
Q Consensus 104 ~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe-vH~nGe~--RkL~~~E~PLlvqL~wg~ddrEgrFvL 180 (197)
-+.++|||||||+|||+|||++||+||++.+ ++.+||||| +|++|+. |||+++|+||++||+|||++++++|+|
T Consensus 14 p~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~---nP~kFALYe~~h~~ge~~~rkL~d~E~PL~~rL~~gp~~~~~~fvL 90 (96)
T cd01778 14 PKDTAKHLHISSKTTVREVIEALLKKFLVVD---NPRKFALFEREHRTGQVYLRKLSDDECPLYLRLLAGPSTDALSFVL 90 (96)
T ss_pred cCCceeEEEEecCCcHHHHHHHHHHhheecc---CCcceEEEEEEecCCcEEEEECCCCCCCeEeeEeeCCCCceeEEEE
Confidence 3679999999999999999999999999665 344999997 7999985 999999999999999999999999999
Q ss_pred eecC
Q psy5451 181 RRID 184 (197)
Q Consensus 181 k~~~ 184 (197)
++|+
T Consensus 91 ~End 94 (96)
T cd01778 91 KEND 94 (96)
T ss_pred EecC
Confidence 9997
No 4
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=99.94 E-value=5.3e-27 Score=177.98 Aligned_cols=75 Identities=28% Similarity=0.507 Sum_probs=71.2
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeeecC
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRID 184 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~~ 184 (197)
+.+.|||||+|||+|||++||+||+|++ ++++||||++|++||.|||+++|+||++||+|||++...+|+|.+.|
T Consensus 13 s~~~v~VsS~~tt~eVI~~LL~KFkv~~---~p~~FALy~vh~~Ge~rkL~d~E~PL~~Rll~GP~e~~~~~flm~~d 87 (87)
T cd01784 13 SVTNVRINSTMTTPQVLKLLLNKFKIEN---SAEEFALYIVHTSGEKRKLKATDYPLIARVLQGPCEQVSKVFLMEKD 87 (87)
T ss_pred ceeEEEEecCCCHHHHHHHHHHhccccC---CHHHeEEEEEeeCCCEEECCCcCCCeehhhhcCCCcccEEEEEEecC
Confidence 4689999999999999999999999998 68899999999999999999999999999999999999999998754
No 5
>KOG4239|consensus
Probab=99.79 E-value=4.2e-20 Score=166.73 Aligned_cols=122 Identities=28% Similarity=0.437 Sum_probs=96.2
Q ss_pred CCccccceeEEEEEecccccccceeeEecccc--cccchhe----eccceeeeeecCC-----ceeeeeeEEeccccchH
Q psy5451 52 NDDLLFHGVMRFYFQDSGQKVATKCIRVASDA--TSQADLL----FHGVMRFYFQDSG-----QKVATKCIRVASDATSQ 120 (197)
Q Consensus 52 ~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~--~sqd~~l----F~Gvmr~~~~d~g-----~k~aTKcIRVsSt~TT~ 120 (197)
.+|-++-|-+-.|..+ .+|+=|-+.- .+-+|.. |.+--+|+ +-- -..+.|+|||+|+|||+
T Consensus 156 ~edg~~tg~i~v~~~l------~rp~sv~~g~~p~~~~d~~~~~r~singhfy--nh~TSfflPa~svk~vrInStttt~ 227 (348)
T KOG4239|consen 156 HEDGEYTGFIKVTLKL------VRPVSVPRGKKPPSVYDARIRHRFSINGHFY--NHRTSFFLPADSVKNVRINSTTTTR 227 (348)
T ss_pred CcccccCCceEEEeec------ccceeccCCCCCCcHHHHHHhhcccccceee--ccceeeecccccceeEEecccccHH
Confidence 4667788888888884 4666443332 3434443 22222222 111 15589999999999999
Q ss_pred HHHHHHHhhcCCCccCCCCCceeeEEEccCCCc---cccCCCCCceeeeeeccCCCceeeeEeeecC
Q psy5451 121 AVIETLIEKFRPDMRMLSVPEYALYEIHENGDE---RKLGTDEKPLLVQLNWHKDDREGRFLLRRID 184 (197)
Q Consensus 121 dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~---RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~~ 184 (197)
+||++||+||++++ ++.+||||++|+.|+. +||+++|+||++||++||++.-.+|+|++||
T Consensus 228 eVI~~LLkKF~Ved---~P~kFALy~~~~~geqv~~~kLkd~d~PL~~RLLqGP~ek~~~~vLmEnD 291 (348)
T KOG4239|consen 228 EVIKLLLKKFRVED---NPQKFALYERHESGEQVKLTKLKDDDYPLILRLLQGPSEKILSFVLMEND 291 (348)
T ss_pred HHHHHHHHHHeecC---CHhheeeeEEeecCchhhheecccccccHHHHHHhCcchhhhheeEeccC
Confidence 99999999999888 5779999999999999 9999999999999999999999999999999
No 6
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=99.77 E-value=1.7e-18 Score=124.38 Aligned_cols=88 Identities=39% Similarity=0.570 Sum_probs=76.4
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKD 172 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~d 172 (197)
+++|+|+.+. ...+.|+|.|++.+|++|||..+++||+.+. ++..|+|||+.++|.+|+|.++|+||.++.+|+++
T Consensus 3 ~~lrV~~~~~-~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~---~~~~y~L~e~~~~~~er~L~~~e~Pl~~~~~~~~~ 78 (90)
T smart00314 3 FVLRVYVDDL-PGGTYKTLRVSSRTTARDVIQQLLEKFHLTD---DPEEYVLVEVLPDGKERVLPDDENPLQLQKLWPRR 78 (90)
T ss_pred eEEEEecccC-CCCcEEEEEECCCCCHHHHHHHHHHHhCCCC---CcccEEEEEEeCCcEEEEeCCCCcceEehhhCCCC
Confidence 4444444343 4557899999999999999999999999876 36699999999889899999999999999999999
Q ss_pred CceeeeEeeecC
Q psy5451 173 DREGRFLLRRID 184 (197)
Q Consensus 173 drEgrFvLk~~~ 184 (197)
....+|+|++++
T Consensus 79 ~~~~~f~lr~~~ 90 (90)
T smart00314 79 GPNLRFVLRKRD 90 (90)
T ss_pred CCcEEEEEEeCC
Confidence 999999999864
No 7
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=99.76 E-value=1.2e-18 Score=122.59 Aligned_cols=91 Identities=40% Similarity=0.642 Sum_probs=79.2
Q ss_pred ccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeE-EEccCCCccccCCCCCceeeeeecc
Q psy5451 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALY-EIHENGDERKLGTDEKPLLVQLNWH 170 (197)
Q Consensus 92 ~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLY-evH~nGe~RkL~~~E~PLlvqL~wg 170 (197)
.|++|+|..+.....+.|+|+|++++|+.|||..+++||.+.. ++.+|+|| ..+..|.+|+|.++|+||.++..|+
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~---~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~ 78 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAE---DPSDYCLVEVEESGGEERPLDDDECPLQIQLQWP 78 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSS---SGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTS
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCC---CCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCc
Confidence 3556666667777779999999999999999999999999733 46699999 4667788999999999999999999
Q ss_pred CCCceeeeEeeecCC
Q psy5451 171 KDDREGRFLLRRIDE 185 (197)
Q Consensus 171 ~ddrEgrFvLk~~~~ 185 (197)
++...++|+||++++
T Consensus 79 ~~~~~~~f~lr~~~d 93 (93)
T PF00788_consen 79 KDSQNSRFVLRRKED 93 (93)
T ss_dssp SGTTTEEEEEEECCC
T ss_pred cccCceEEEEEEcCC
Confidence 999999999999875
No 8
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=99.75 E-value=1.6e-18 Score=123.48 Aligned_cols=85 Identities=41% Similarity=0.567 Sum_probs=76.1
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccC-CCccccCCCCCceeeeeeccCCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN-GDERKLGTDEKPLLVQLNWHKDD 173 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~n-Ge~RkL~~~E~PLlvqL~wg~dd 173 (197)
+|+|..+. ..-+.|+|+|++.+|+++||..+++||++++ ++..|+|||++.+ |.+|+|.++|+||.+++.|++..
T Consensus 2 ikV~~~~~-~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~---~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~~~~~ 77 (87)
T cd01768 2 LRVYPEDP-SGGTYKTLRVSKDTTAQDVIQQLLKKFGLDD---DPEDYALVEVLGDGGLERLLLPDECPLQIQLNAPRQR 77 (87)
T ss_pred EEEeCCcC-CCccEEEEEECCCCCHHHHHHHHHHHhCCcC---CcccEEEEEEECCceEEEEeCCCCChHHHHHhcCCCC
Confidence 45555565 6678899999999999999999999999886 5779999999988 67999999999999999999999
Q ss_pred ceeeeEeeec
Q psy5451 174 REGRFLLRRI 183 (197)
Q Consensus 174 rEgrFvLk~~ 183 (197)
..++|+||.+
T Consensus 78 ~~~~F~lr~~ 87 (87)
T cd01768 78 EDLRFLLRKR 87 (87)
T ss_pred CcEEEEEecC
Confidence 9999999964
No 9
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=99.53 E-value=8.2e-15 Score=115.95 Aligned_cols=78 Identities=28% Similarity=0.320 Sum_probs=67.5
Q ss_pred cCCCccccccccceeeccCCCCccccceeEEEEEecccccccceeeEecccccccchhe-----eccceeeeeecCCcee
Q psy5451 32 SEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLL-----FHGVMRFYFQDSGQKV 106 (197)
Q Consensus 32 ~~~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~l-----F~Gvmr~~~~d~g~k~ 106 (197)
|+|+++++||||||||+||.+. |+|||||||||++|++++|. |+..|||. + ..++
T Consensus 12 s~p~e~lef~gvmrf~~qd~~~-----------------k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~--s-~p~F 71 (112)
T cd01782 12 SYPTEDLEFHGVMRFYFQDGGE-----------------KVATKCIRVSSTATTRDVIDTLSEKFRPDMRML--S-NPTY 71 (112)
T ss_pred cCCCcccEEeeEEEEEEEcCCC-----------------cEEEEEEEEecCCCHHHHHHHHHHHhccccccc--C-Ccce
Confidence 0499999999999999999876 69999999999999999887 99999998 4 4488
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE 146 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe 146 (197)
|--.|+-+ .+.|.|+..+|+|+.
T Consensus 72 ALYevh~n-----------------Ge~RKL~d~E~PL~~ 94 (112)
T cd01782 72 SLYEVHEN-----------------GEERRLLDDEKPLVV 94 (112)
T ss_pred EEEEEecC-----------------CceEEcCCcCCCeEE
Confidence 88888764 346789999999999
No 10
>KOG1892|consensus
Probab=99.41 E-value=4.6e-14 Score=141.89 Aligned_cols=75 Identities=33% Similarity=0.397 Sum_probs=64.4
Q ss_pred CCccccccccceeeccCCCCccccceeEEEEEecccccccceeeEecccccccchhe-----eccceeeeeecCCceeee
Q psy5451 34 PNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLL-----FHGVMRFYFQDSGQKVAT 108 (197)
Q Consensus 34 ~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~l-----F~Gvmr~~~~d~g~k~aT 108 (197)
|++.++|||||||||||..+ ||||||||||||||++|+|. |+++|||+
T Consensus 33 PtEdLefhGVMRFYFQDag~-----------------kvaTKCiRVsStATt~dVidtL~EKFrPDmrML---------- 85 (1629)
T KOG1892|consen 33 PTEDLEFHGVMRFYFQDAGG-----------------KVATKCIRVSSTATTQDVIDTLAEKFRPDMRML---------- 85 (1629)
T ss_pred CCccceeeeeEEEEeecccc-----------------hhhhheeEecccccHHHHHHHHHHHhCcchhhh----------
Confidence 89999999999999999433 79999999999999999987 99999999
Q ss_pred eeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE
Q psy5451 109 KCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE 146 (197)
Q Consensus 109 KcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe 146 (197)
|.. -+.|+|-+-...|.|..+|-+|.+
T Consensus 86 ------S~p-----~YsLyEVH~nGERrL~~dEKPLvV 112 (1629)
T KOG1892|consen 86 ------SSP-----KYSLYEVHVNGERRLDIDEKPLVV 112 (1629)
T ss_pred ------cCC-----CceeeeeecCcccccCcccCceEE
Confidence 444 356666666555889999999888
No 11
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=98.65 E-value=6.1e-08 Score=75.46 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=71.0
Q ss_pred cceeeeeecCC---ceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccC----------CCccccCCC
Q psy5451 93 GVMRFYFQDSG---QKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN----------GDERKLGTD 159 (197)
Q Consensus 93 Gvmr~~~~d~g---~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~n----------Ge~RkL~~~ 159 (197)
|++|+| .| -.+.=|.|-||++.||++||.--|+||-.+.. ++.+|.|-+|.-. +.+|.|.++
T Consensus 2 G~LKIY---g~~L~~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e--~p~~Y~LveV~~~~~~~~~~~r~~~eRil~d~ 76 (100)
T cd01781 2 GTLKIY---GGSLVPTRPYKTILLSINDNADRIVGEALEKYGLEKS--DPDDYCLVEVSNDDDRKSSDLREIDERILDDD 76 (100)
T ss_pred CeEEEc---CCcccCCCCeEEEEecCCccHHHHHHHHHHHhCCCcc--CccceEEEEEecccccccccccceeEEeCCCC
Confidence 566776 33 35778999999999999999999999998773 4559999998755 348999999
Q ss_pred CCceeeeeeccCCCceeeeEeee
Q psy5451 160 EKPLLVQLNWHKDDREGRFLLRR 182 (197)
Q Consensus 160 E~PLlvqL~wg~ddrEgrFvLk~ 182 (197)
|+||.++.+|.++.---+|.|+.
T Consensus 77 E~Pl~i~~~w~~~~g~~~f~l~~ 99 (100)
T cd01781 77 ECPLFIMTAGPGENGFDSFLAIR 99 (100)
T ss_pred cCHHHHHHhCCCccCceeeEEec
Confidence 99999999999986656998874
No 12
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=98.22 E-value=2.6e-06 Score=66.19 Aligned_cols=76 Identities=32% Similarity=0.411 Sum_probs=63.8
Q ss_pred eeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCC--CccccCCCCCceeeeeeccCC----Cceeee
Q psy5451 105 KVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENG--DERKLGTDEKPLLVQLNWHKD----DREGRF 178 (197)
Q Consensus 105 k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nG--e~RkL~~~E~PLlvqL~wg~d----drEgrF 178 (197)
.++-+.|.||++.|+++||..-|+||-.+.. ++.+|.|-||+-+. .+|.|.++|+||.+..+-.++ -.--||
T Consensus 15 ~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~--~~~~y~LvEV~ld~gv~ER~l~~~E~Pl~i~~~~r~~SvR~~~~tRF 92 (97)
T cd01783 15 GVAYVSIRVNKDTTVQDVILEVLPLFGLQAE--CPESFRLIEVLLDRGVVERTVLPQEKPLQIRLQLRKDSLRQMHQTRF 92 (97)
T ss_pred CcceEEEEecccchHHHHHHHHHHHhCcccC--CccccEEEEEEecCCeeeeeCCCccChHHHHHHhhhhhhhhhcceEE
Confidence 5788899999999999999999999997774 55699999998443 389999999999888887776 235688
Q ss_pred Eeee
Q psy5451 179 LLRR 182 (197)
Q Consensus 179 vLk~ 182 (197)
+|++
T Consensus 93 yl~~ 96 (97)
T cd01783 93 YVQE 96 (97)
T ss_pred Eecc
Confidence 8875
No 13
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=98.13 E-value=4.3e-06 Score=63.66 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=66.1
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccC-CCccccCCCCCceeeeeeccCCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN-GDERKLGTDEKPLLVQLNWHKDD 173 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~n-Ge~RkL~~~E~PLlvqL~wg~dd 173 (197)
+|+|.-|+ ++|.|=|.++||+.||...|++|=+..+ .+..+|||.++. |=+|.+.|.|+-+=+..+|+- +
T Consensus 5 vkv~~~Dg----~sK~l~V~~~~Ta~dV~~~L~~K~h~~~----~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~-~ 75 (85)
T cd01787 5 VKVYSEDG----ASKSLEVDERMTARDVCQLLVDKNHCQD----DSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHS-A 75 (85)
T ss_pred EEEEecCC----CeeEEEEcCCCcHHHHHHHHHHHhCCCC----CCCeEEEEecchhhhhhhccchHHHHHHHHhccc-C
Confidence 34444444 7899999999999999999999999444 679999999977 458999999999889999998 6
Q ss_pred ceeeeEeeec
Q psy5451 174 REGRFLLRRI 183 (197)
Q Consensus 174 rEgrFvLk~~ 183 (197)
.+.+|+++.|
T Consensus 76 ~~n~l~f~k~ 85 (85)
T cd01787 76 GNSVLFFRKN 85 (85)
T ss_pred CCcEEEEecC
Confidence 6777777654
No 14
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=97.70 E-value=0.00015 Score=55.98 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=66.5
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCc--eeeeeeccCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKP--LLVQLNWHKD 172 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~P--LlvqL~wg~d 172 (197)
+|+-|||-.+--..|-+-|.-.+||++|-.+-.+||++++ +..|+||.+- +|+.++|.++++| +=..|.-.+-
T Consensus 2 l~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~V~q----Pe~y~LFl~v-dg~~~qLadd~~Pq~ika~L~~~~~ 76 (87)
T cd01776 2 LRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVTQ----PEEYSLFLFV-EETWQQLAPDTYPQRIKAELHSRPQ 76 (87)
T ss_pred eeEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhccCC----hhheeEEEEE-CCcEEEcCcccccceechhhccCCC
Confidence 3555667777778999999999999999999999999776 6799999864 5667999999999 5556666666
Q ss_pred CceeeeEee
Q psy5451 173 DREGRFLLR 181 (197)
Q Consensus 173 drEgrFvLk 181 (197)
-+.+-||-+
T Consensus 77 ~~~fhfvYr 85 (87)
T cd01776 77 PNTFHFVYR 85 (87)
T ss_pred CcceEEEEe
Confidence 667777755
No 15
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=97.68 E-value=0.00031 Score=55.69 Aligned_cols=82 Identities=26% Similarity=0.403 Sum_probs=65.6
Q ss_pred eeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccC-CCccccCCCCCceeeeeeccCC---
Q psy5451 97 FYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN-GDERKLGTDEKPLLVQLNWHKD--- 172 (197)
Q Consensus 97 ~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~n-Ge~RkL~~~E~PLlvqL~wg~d--- 172 (197)
.|=+-..+..+.=-|.+.++.|+.+||..+++..+.|- +.-|-|-||.++ ||++.|.+.|.|+-.=|+|-..
T Consensus 15 IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~----tk~YvLaEVkEsGgEEwvL~p~D~pvqR~lLWPr~aqe 90 (105)
T cd01779 15 IYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDG----TKCYVLAEVKESGGEEWVLDPTDSPVQRVLLWPRRAQE 90 (105)
T ss_pred EccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCc----cccEEEEEeeccCCeeeecCcccCceeeEEeccHHHHh
Confidence 34344555556666889999999999999999999665 458999999999 6899999999999988888544
Q ss_pred ----CceeeeEeee
Q psy5451 173 ----DREGRFLLRR 182 (197)
Q Consensus 173 ----drEgrFvLk~ 182 (197)
...=+|+|++
T Consensus 91 ~hp~~~gyyFlLqe 104 (105)
T cd01779 91 EHPQEDGYYFLLQE 104 (105)
T ss_pred cCCCcCceEEEEec
Confidence 3345788875
No 16
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=97.00 E-value=0.0017 Score=50.86 Aligned_cols=48 Identities=31% Similarity=0.346 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeee
Q psy5451 114 ASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQ 166 (197)
Q Consensus 114 sSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvq 166 (197)
+=.+|++|||.+|-.||-... ...|-|+.-. .|-.|.|.++|+|++.|
T Consensus 20 ~l~tTv~eli~~L~rK~~l~~----~~ny~l~l~~-~~l~RvL~p~ErPl~Iq 67 (97)
T cd01775 20 PLNTTVSELIPQLAKKFYLPS----GGNYQLSLKK-HDLSRVLRPTEKPLLIQ 67 (97)
T ss_pred CCcCcHHHHHHHHHHhhcCCC----CCCeEEEEEE-CCeeeecCCcCCcHHHH
Confidence 445788999999999998333 2488887644 45569999999998765
No 17
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=96.98 E-value=0.00055 Score=53.79 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=56.6
Q ss_pred eeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeee
Q psy5451 108 TKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182 (197)
Q Consensus 108 TKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~ 182 (197)
-|..|||...++..|+..-|.||++..- +=..|+||.++.+- +|+|+-+|+||++==+--+..+.-.|.|+.
T Consensus 26 ~K~~rvs~dDpC~kVL~~Alkry~I~~~--dW~~Y~L~I~Ygdq-ER~L~ldEKPl~lFk~L~~~g~~P~fMLRr 97 (98)
T cd01786 26 LKQLRASKEDSCEKILKNAMKRHNLNDQ--DWRQYVLVICYGDQ-ERILDLDEKPVIIFKNLKQQGLHPAIMLRR 97 (98)
T ss_pred chheeeeccCcHHHHHHHHHHHcCCChh--hhhheEEEEEeCCe-eeeccccccHHHHHHHHHHcCCCCeeEeec
Confidence 5889999999999999999999995541 23499999999874 699999999988754444445555666653
No 18
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=96.95 E-value=0.0012 Score=51.56 Aligned_cols=72 Identities=26% Similarity=0.403 Sum_probs=55.9
Q ss_pred ceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE-EccC--CC------ccccCCCCCceeeeeeccCCCc
Q psy5451 104 QKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE-IHEN--GD------ERKLGTDEKPLLVQLNWHKDDR 174 (197)
Q Consensus 104 ~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe-vH~n--Ge------~RkL~~~E~PLlvqL~wg~ddr 174 (197)
+++++ +|+.+-.|+.|||..-|-|=+=.+. ++.+|-|-| +... |. .|.|.++|.|+-.|-.|..+
T Consensus 12 qP~~i--l~a~~~STa~Dvi~Qal~KA~rs~~--~~~~fVLvEEv~~~~~~~~~~~~~QRVL~~~E~v~~aQs~Wkg~-- 85 (93)
T cd01780 12 QPYAI--LRAPRVSTAQDVIQQTLCKARRSNP--NPSDFVLVEEVCKDTKNNKTPKSSQRILLDQECVYQAQSKWKGA-- 85 (93)
T ss_pred CCeeE--EEccccccHHHHHHHHHHHhccCCC--CccceEEEEEeeccccccCCCChhHhhhhcccchHHHHhhhcCC--
Confidence 44443 7888999999999999988873221 345999988 4322 22 68899999999999999887
Q ss_pred eeeeEeee
Q psy5451 175 EGRFLLRR 182 (197)
Q Consensus 175 EgrFvLk~ 182 (197)
|||+||.
T Consensus 86 -GrFiLk~ 92 (93)
T cd01780 86 -GKFILKL 92 (93)
T ss_pred -ceEEEec
Confidence 9999986
No 19
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=96.46 E-value=0.0032 Score=48.45 Aligned_cols=55 Identities=35% Similarity=0.467 Sum_probs=44.5
Q ss_pred eEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCc--eeee
Q psy5451 110 CIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKP--LLVQ 166 (197)
Q Consensus 110 cIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~P--Llvq 166 (197)
-|+|-.+.+|++|.+.+..|-..+.. ...=|+||+|-..+=.|||.+.|.| |.+|
T Consensus 15 ~V~v~~s~~a~~Vleav~~kl~L~~e--~~~YFaLFev~~~~f~RKL~dfE~Ph~ly~~ 71 (87)
T cd01777 15 TVRVRKNATTDQVYQALVAKAGMDSY--TQNYFALFEVINHSFVRKLAPNEFPHKLYVQ 71 (87)
T ss_pred EEEEEEcccHHHHHHHHHHHhCCCHH--HHhheeeeEEecceEEEeccCccCCceEEEE
Confidence 35566677889999999999883321 3458999999999989999999999 7666
No 20
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=95.86 E-value=0.015 Score=45.41 Aligned_cols=55 Identities=25% Similarity=0.225 Sum_probs=40.9
Q ss_pred cccceeeEecccccccchhe-----eccceeeeeecCCceeeee-eEEeccccchHHHHHHHHhhcCCCccCCCCCceee
Q psy5451 71 KVATKCIRVASDATSQADLL-----FHGVMRFYFQDSGQKVATK-CIRVASDATSQAVIETLIEKFRPDMRMLSVPEYAL 144 (197)
Q Consensus 71 ~~~tk~irvss~~~sqd~~l-----F~Gvmr~~~~d~g~k~aTK-cIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaL 144 (197)
+.++|||||||+.|++++|. |+ + -++-+|+|-- +++-+.. ...|.|+..+++|
T Consensus 15 ~~s~k~v~IsS~tTt~eVI~~LL~KF~----v--~~nP~kFALYe~~h~~ge---------------~~~rkL~d~E~PL 73 (96)
T cd01778 15 KDTAKHLHISSKTTVREVIEALLKKFL----V--VDNPRKFALFEREHRTGQ---------------VYLRKLSDDECPL 73 (96)
T ss_pred CCceeEEEEecCCcHHHHHHHHHHhhe----e--ccCCcceEEEEEEecCCc---------------EEEEECCCCCCCe
Confidence 56899999999999998887 63 3 3677777765 5554421 1136888999999
Q ss_pred EE
Q psy5451 145 YE 146 (197)
Q Consensus 145 Ye 146 (197)
+.
T Consensus 74 ~~ 75 (96)
T cd01778 74 YL 75 (96)
T ss_pred Ee
Confidence 99
No 21
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=95.69 E-value=0.024 Score=43.79 Aligned_cols=69 Identities=17% Similarity=0.349 Sum_probs=52.4
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEc--cCCC--ccccCCCCCceeeeeeccCCCceeeeEeee
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH--ENGD--ERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH--~nGe--~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~ 182 (197)
..|-|=|+-.+|..+|+..-++.|-+-. +.+.|||+||- ++|- .|||.|.=.-|..|+. --|||+||+
T Consensus 13 t~kyili~K~Tta~evv~lal~eFgi~~---~s~~~sLceVtV~~~g~IKQrRLPdql~~La~RI~-----Ln~RYYLKn 84 (85)
T cd01785 13 TCKYLLIYKETTAHEVVMLALQEFGITA---PSSNFSLCEVSVTPGGVIKQRRLPDQLQNLAERIQ-----LSSRYYLKN 84 (85)
T ss_pred ceeEEEEeccccHHHHHHHHHHHhCCCC---CccceEEEEEEecCCceeeeccCCHHHHHHHHhhc-----ccceEEecc
Confidence 4566778888999999999999999655 36699999955 5553 7888876555655554 358999998
Q ss_pred c
Q psy5451 183 I 183 (197)
Q Consensus 183 ~ 183 (197)
|
T Consensus 85 N 85 (85)
T cd01785 85 N 85 (85)
T ss_pred C
Confidence 6
No 22
>KOG1574|consensus
Probab=95.62 E-value=0.0081 Score=56.23 Aligned_cols=66 Identities=26% Similarity=0.402 Sum_probs=55.9
Q ss_pred eccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeeecCC
Q psy5451 113 VASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDE 185 (197)
Q Consensus 113 VsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~~~ 185 (197)
|++.+|++|||.+|++-+- ....|+|-+=..+- +|.|.+.|.||-+...||.--.+-.|||..-+.
T Consensus 22 vt~~TTCqdVV~ALa~aig------q~Grf~iVEKwR~~-ER~L~p~erpl~ll~~wge~a~nvqfvL~R~~a 87 (375)
T KOG1574|consen 22 VTERTTCQDVVIALAQAIG------QKGRFTIVEKWRGY-ERHLAPSERPLKLLAKWGEYASNVQFVLLRTDA 87 (375)
T ss_pred ccCCccHHHHHHHHHHHhC------CCCceEEeehhccc-ccccCCccCHHHHHHhhhhccccceehhhcccC
Confidence 6799999999999999554 23468887766665 599999999999999999999999999988773
No 23
>KOG3751|consensus
Probab=95.22 E-value=0.017 Score=56.82 Aligned_cols=91 Identities=23% Similarity=0.258 Sum_probs=73.2
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccC-CCccccCCCCCceeeeeeccC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN-GDERKLGTDEKPLLVQLNWHK 171 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~n-Ge~RkL~~~E~PLlvqL~wg~ 171 (197)
=++++|--|+ |+|.+=|-..||+.+|.+.|++|=+.++ ....+|||.|+. +-+|.+-|.|.=+=|.-+|+-
T Consensus 189 lvVKvfseDg----asksL~Vder~tardV~~lL~eKnH~~~----d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~ 260 (622)
T KOG3751|consen 189 LVVKVFSEDG----ASKSLLVDERMTARDVCQLLAEKNHCAD----DEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQ 260 (622)
T ss_pred eeEEEEccCC----ceeeEeecccccHHHHHHHHHHhhhhhc----ccceeeeeecchhhhhhhhhhHHHHHHHHhhccc
Confidence 3677886666 8999999999999999999999999655 569999999976 558999999854445556775
Q ss_pred CCceeeeEeeecCCCceeeec
Q psy5451 172 DDREGRFLLRRIDEATNVSIN 192 (197)
Q Consensus 172 ddrEgrFvLk~~~~~~~~~~~ 192 (197)
|-|.+|+.+.+.++-...++
T Consensus 261 -dseNK~lF~k~~~Kyeff~~ 280 (622)
T KOG3751|consen 261 -DSENKLLFRKNPAKYEFFKR 280 (622)
T ss_pred -CCCceeEEeecchhcccccC
Confidence 46889999999887655443
No 24
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=95.20 E-value=0.085 Score=41.25 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=38.0
Q ss_pred eeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCc-cccC
Q psy5451 108 TKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDE-RKLG 157 (197)
Q Consensus 108 TKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~-RkL~ 157 (197)
++-|.|.|.+|+.||++.+.++..+. ....|+||++..+++. +-|.
T Consensus 15 ~~~~~~~~~~t~~ev~~~v~~~~~l~----~~~~F~L~~~~~~~~~~~~l~ 61 (207)
T smart00295 15 TLEFEVDSSTTAEELLETVCRKLGIR----ESEYFGLQFEDPDEDLSHWLD 61 (207)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCC----ccceeEEEEEcCCCCcCeeCC
Confidence 66789999999999999999999962 4569999999987654 4554
No 25
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=94.53 E-value=0.035 Score=38.85 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=29.0
Q ss_pred ceeEEEEEecccccccceeeEecccccccchhe
Q psy5451 58 HGVMRFYFQDSGQKVATKCIRVASDATSQADLL 90 (197)
Q Consensus 58 ~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~l 90 (197)
+|++|+|.+|......+|+|+|+++.|..+.|.
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~ 34 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIE 34 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHH
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHH
Confidence 599999999987667899999999998887776
No 26
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=93.25 E-value=0.82 Score=35.56 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=53.2
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeee
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~ 182 (197)
--|||=|+|...|++||.-.++|+-.|.. .+.+|.|.-+-+.+.+=.+.+.-.+-..= + .+....|+|+.
T Consensus 17 ~YKSIlltsqDktP~VI~ral~Khnl~~~--~~~~Y~L~Q~Lp~d~El~iP~~aNvfYAm-~---~~~~~dF~LR~ 86 (87)
T cd00153 17 LYKSILLTSQDKAPQVIRRAMEKHNLESE--VAEDYELVQVLPGDRELVIPDNANVFYAM-N---PAANLDFILRK 86 (87)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHhCCCcC--CccceEEEEEcCCCceEeccCCCceEEEe-c---CCcccceEeec
Confidence 35999999999999999999999997773 35699999999877667777777664321 1 12455677763
No 27
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=93.21 E-value=0.16 Score=29.78 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=31.2
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEcc
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHE 149 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~ 149 (197)
..+.+++++.+|+.+|+..+.+++. ..++.|+||....
T Consensus 8 ~~~~~~~~~~~tv~~l~~~i~~~~~-----~~~~~~~l~~~~~ 45 (69)
T cd00196 8 KTVELLVPSGTTVADLKEKLAKKLG-----LPPEQQRLLVNGK 45 (69)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHC-----cChHHeEEEECCe
Confidence 5677899999999999999999997 2456899987443
No 28
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=92.19 E-value=0.13 Score=36.90 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=27.8
Q ss_pred cceeEEEEEecccccccceeeEecccccccchhe
Q psy5451 57 FHGVMRFYFQDSGQKVATKCIRVASDATSQADLL 90 (197)
Q Consensus 57 f~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~l 90 (197)
.++++|+|+.|. ..-..|+|.|+++.|.++.|.
T Consensus 1 ~~~~lrV~~~~~-~~~~~kti~v~~~tTa~~Vi~ 33 (90)
T smart00314 1 DTFVLRVYVDDL-PGGTYKTLRVSSRTTARDVIQ 33 (90)
T ss_pred CceEEEEecccC-CCCcEEEEEECCCCCHHHHHH
Confidence 368999999974 345789999999999998877
No 29
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=91.90 E-value=0.11 Score=36.94 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=25.6
Q ss_pred eEEEEEecccccccceeeEecccccccchhe
Q psy5451 60 VMRFYFQDSGQKVATKCIRVASDATSQADLL 90 (197)
Q Consensus 60 vmrf~~qd~~~~~~tk~irvss~~~sqd~~l 90 (197)
+||+|++|. ..-..|+|+|++++|+++.|.
T Consensus 1 ~ikV~~~~~-~~~~~kti~V~~~~t~~~Vi~ 30 (87)
T cd01768 1 VLRVYPEDP-SGGTYKTLRVSKDTTAQDVIQ 30 (87)
T ss_pred CEEEeCCcC-CCccEEEEEECCCCCHHHHHH
Confidence 478999985 456789999999999998877
No 30
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=85.86 E-value=2.1 Score=33.58 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=46.9
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEcc----CCCccccCCCCCceeeeeeccCCCc-eeeeEe
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHE----NGDERKLGTDEKPLLVQLNWHKDDR-EGRFLL 180 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~----nGe~RkL~~~E~PLlvqL~wg~ddr-EgrFvL 180 (197)
.||-|-|+-..+..+|+.-.|.||-... ....|..|.+.. +..-+.|.+.| |+++.++++.. .+|-+|
T Consensus 11 ~tk~VNV~~c~~a~eI~~rvLKKfg~~~---~~~~~~~~v~d~~~~~~~~~~~LsD~E---L~~IC~s~~r~er~Rlil 83 (105)
T PF14847_consen 11 STKTVNVSGCFNAQEIKRRVLKKFGLPE---HPRNYCFYVLDGESPDPSNCRPLSDVE---LVTICHSPDRPERNRLIL 83 (105)
T ss_dssp EEEEEE--S--HHHHHHHHHHHHHTSS-----CCCEEEEEE-S-----SSEEEE-SSH---HHHHHHTT--SSS--EEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCcc---ccccceEEEecccccccccceECcHHH---HHHHHcCCCCccccceEE
Confidence 6888999999999999999999999444 456899998776 45689999998 88999997755 567777
No 31
>KOG3542|consensus
Probab=84.92 E-value=0.62 Score=48.10 Aligned_cols=83 Identities=25% Similarity=0.476 Sum_probs=63.0
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE--EccCCC--ccccCCCCCceeeeeec
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE--IHENGD--ERKLGTDEKPLLVQLNW 169 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe--vH~nGe--~RkL~~~E~PLlvqL~w 169 (197)
|+|+|=-|. ..|-|=|+-++|..+|+..-+..|-.-. .+++|+|-| |-..|. .|+|.+-=.-|.-|+..
T Consensus 760 Vlrvfk~DQ----qs~Yi~isKdTtAkeVV~~A~~EF~~Ta---~sd~ySLCEvsVTpeGVIKQRRLPdQ~skLAdRIqL 832 (1283)
T KOG3542|consen 760 VLRVFKNDQ----QSKYIPISKDTTAKEVVQLALQEFNMTA---GSDEYSLCEVSVTPEGVIKQRRLPDQMSKLADRIQL 832 (1283)
T ss_pred HHHHhhccc----cceeEEEeccccHHHHHHHHHHHhcccc---CCCceeeEEEEecchhhhhhccCCHHHHHHHHHhhh
Confidence 566664444 5677889999999999999999999554 567999999 556775 78887765556555543
Q ss_pred cCCCceeeeEeeecCCCce
Q psy5451 170 HKDDREGRFLLRRIDEATN 188 (197)
Q Consensus 170 g~ddrEgrFvLk~~~~~~~ 188 (197)
.|||+||+|-+..+
T Consensus 833 -----ngRYYLKNNmetEt 846 (1283)
T KOG3542|consen 833 -----NGRYYLKNNMETET 846 (1283)
T ss_pred -----cceeeeccCcccCc
Confidence 59999999987643
No 32
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=84.48 E-value=5.2 Score=27.63 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=43.3
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE-EccCCCccccCCCCCceeeeeec
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE-IHENGDERKLGTDEKPLLVQLNW 169 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe-vH~nGe~RkL~~~E~PLlvqL~w 169 (197)
+++-+.|.+++|..|+++.+.++.... ...-|+|+. ...+|+.+-| +.++||.-|+.-
T Consensus 7 ~~~~~~v~~~~t~~~l~~~v~~~l~l~----e~~~FgL~~~~~~~~~~~wL-~~~k~l~~q~~~ 65 (80)
T PF09379_consen 7 TTKTFEVDPKTTGQDLLEQVCDKLGLK----EKEYFGLQYQVDKDGEHHWL-DLDKKLKKQLKK 65 (80)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTTS----SGGGEEEEE-EBTTSSEEEE--SSSBGGGSTBT
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHcCCC----CccEEEEEEeecCCCcceec-cCcccHHHHcCC
Confidence 467788999999999999999999844 356899999 7777765444 444577666543
No 33
>KOG2320|consensus
Probab=83.10 E-value=1.9 Score=43.28 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=65.0
Q ss_pred eeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeee--eeccCCC
Q psy5451 96 RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQ--LNWHKDD 173 (197)
Q Consensus 96 r~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvq--L~wg~dd 173 (197)
+.-||+.-+-+..||.=+.-.++|+.+-.+-.+||++++ +.+|.||..-+.++ .+|.+++.|-.+- +.-.++-
T Consensus 546 ~aa~qe~~~g~~~aT~~~~p~~~t~~lc~lCa~kf~v~~----p~~~~Lfl~~e~~~-s~L~~~~lPh~i~t~~~~~~~~ 620 (651)
T KOG2320|consen 546 RAAYQEPVSGCTKATLASRPSAQTQILCRLCAEKFGVTS----PQEHGLFLFVEGWD-SQLADDALPHDIKTILSLTIHK 620 (651)
T ss_pred heeccccccccccccccCCCccchhhhhHhhHHhhcCCC----ccccCeEEEecCcc-ccCCccccceecchhhcccccc
Confidence 333444444333444445566778888888999999776 67999999877775 9999999997766 6667778
Q ss_pred ceeeeEeeecCCCc
Q psy5451 174 REGRFLLRRIDEAT 187 (197)
Q Consensus 174 rEgrFvLk~~~~~~ 187 (197)
++-+|++|+.+...
T Consensus 621 ~~~~fayk~~d~~~ 634 (651)
T KOG2320|consen 621 SKFHFAYKRDDTIV 634 (651)
T ss_pred cccccccccccccc
Confidence 89999999988764
No 34
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=74.07 E-value=8.4 Score=24.75 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=28.0
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+..+ + +.+++|+.++|..++...|.+++.
T Consensus 1 ~~i~vk~~~-~--~~~~~v~~~~tv~~lk~~i~~~~~ 34 (64)
T smart00213 1 IELTVKTLD-G--TITLEVKPSDTVSELKEKIAELTG 34 (64)
T ss_pred CEEEEEECC-c--eEEEEECCCCcHHHHHHHHHHHHC
Confidence 455666666 3 678999999999999999999987
No 35
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=73.97 E-value=3 Score=32.41 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=39.6
Q ss_pred ceeeEecccccccchhe-----eccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE
Q psy5451 74 TKCIRVASDATSQADLL-----FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE 146 (197)
Q Consensus 74 tk~irvss~~~sqd~~l-----F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe 146 (197)
.+-|||||+.|++++|. |.-+ ++-+++|--.++-+- +.|.|+..+|+|+.
T Consensus 14 ~~~v~VsS~~tt~eVI~~LL~KFkv~------~~p~~FALy~vh~~G-----------------e~rkL~d~E~PL~~ 68 (87)
T cd01784 14 VTNVRINSTMTTPQVLKLLLNKFKIE------NSAEEFALYIVHTSG-----------------EKRKLKATDYPLIA 68 (87)
T ss_pred eeEEEEecCCCHHHHHHHHHHhcccc------CCHHHeEEEEEeeCC-----------------CEEECCCcCCCeeh
Confidence 47799999999999887 6544 777888888876443 24688889999998
No 36
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=70.12 E-value=3 Score=29.66 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=12.5
Q ss_pred ceeeEecccccccc-hhe
Q psy5451 74 TKCIRVASDATSQA-DLL 90 (197)
Q Consensus 74 tk~irvss~~~sqd-~~l 90 (197)
-||+||||-....+ ++-
T Consensus 12 FrcvRvs~idd~~~~e~a 29 (50)
T TIGR01624 12 FKCVRVTAIDDGEQAEYA 29 (50)
T ss_pred EEEEEEeccCCCCCceEE
Confidence 48999999876554 443
No 37
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=69.40 E-value=5.1 Score=30.13 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=30.2
Q ss_pred EEeccccchHHHHHHHHhh--cCCCccCCCCCceeeEEEcc
Q psy5451 111 IRVASDATSQAVIETLIEK--FRPDMRMLSVPEYALYEIHE 149 (197)
Q Consensus 111 IRVsSt~TT~dVI~~LleK--FrpdnRmLs~pefaLYevH~ 149 (197)
|.|++++|-+++|+.|.++ |+.-++.++...-.||+..+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~p 41 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSP 41 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSS
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCC
Confidence 5789999999999999999 66666667777889999544
No 38
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=68.44 E-value=17 Score=27.84 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=40.5
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGT 158 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~ 158 (197)
+++||+++ +.+|+|.++.+-+|..+-+.+||+.. ..|.|--..+ |+.--+.+
T Consensus 5 VKv~~~~D-----v~~i~v~~~i~f~dL~~kIrdkf~~~------~~~~iKykDE-GD~iti~s 56 (86)
T cd06408 5 VKVHAQDD-----TRYIMIGPDTGFADFEDKIRDKFGFK------RRLKIKMKDD-GDMITMGD 56 (86)
T ss_pred EEEEecCc-----EEEEEcCCCCCHHHHHHHHHHHhCCC------CceEEEEEcC-CCCccccC
Confidence 35666665 78999999999999999999999963 3788877777 76544433
No 39
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=66.12 E-value=11 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=28.8
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
++++||++ |-.|||.+..+-+++.+.|.+|++.
T Consensus 4 vvKV~f~~------tIaIrvp~~~~y~~L~~ki~~kLkl 36 (80)
T cd06406 4 VVKVHFKY------TVAIQVARGLSYATLLQKISSKLEL 36 (80)
T ss_pred EEEEEEEE------EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 46777774 7789999999999999999999993
No 40
>KOG3784|consensus
Probab=66.08 E-value=13 Score=35.71 Aligned_cols=64 Identities=27% Similarity=0.450 Sum_probs=49.5
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC-CCccCCCCCceeeEEEccC-----CCccccCCCCCce
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR-PDMRMLSVPEYALYEIHEN-----GDERKLGTDEKPL 163 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr-pdnRmLs~pefaLYevH~n-----Ge~RkL~~~E~PL 163 (197)
+...-|.-+|+++..+|++ ..||.+|++....|-. |+. ...-|+||++-.+ ...|+|.+.|.|-
T Consensus 108 v~l~v~lpng~~i~i~~~~---s~tt~~vl~~v~~kl~l~~e---~i~~f~lFlvr~~~~~~ls~vRkl~~fE~p~ 177 (407)
T KOG3784|consen 108 VELDVFLPNGEKITINCLV---SDTASLVLKSVCRKLGLPDE---LIGYFGLFLVRDNDPGNLSFVRKLADFESPY 177 (407)
T ss_pred eEEEEEccCCceEEEEEEe---cccHHHHHHHHHhhcCCchH---hhhheeeeEEeccCCCcceeeeeeccccccc
Confidence 3344444789999988875 4567999999999988 433 3568999999877 5689999999985
No 41
>KOG1117|consensus
Probab=61.05 E-value=8.8 Score=40.66 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=58.6
Q ss_pred eeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCC-ccccCCCCCceeeeeeccCCCceeeeEeeecCCC
Q psy5451 108 TKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGD-ERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEA 186 (197)
Q Consensus 108 TKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe-~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~~~~ 186 (197)
.--|+|+-+||.+||-...|.+=-.+-+ ..+-|+.|||-++|| +|.|-.-|+=|=--|.|.--.-...+|||..+.+
T Consensus 941 ~~~ikVs~sm~aEEltneila~r~~~~~--~~d~watFEv~e~~eleRpLh~aekvleqvLqw~~l~csa~lvvkkh~~~ 1018 (1186)
T KOG1117|consen 941 SIIIKVSPSMTAEELTNEILAIRNIIPT--KGDIWATFEVIENEELERPLHYAEKVLEQVLQWSSLACSAYLVVKKHLTA 1018 (1186)
T ss_pred ceeEecCccccHHHHHHHHHHhcCCCCC--CCCceEEEEEccCcccccCCchHHHHHHHHHhhhccCCcceEEeehhhhH
Confidence 4458999999999999999998775553 234799999999999 8999998876654566654455566777766544
No 42
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=59.25 E-value=23 Score=24.52 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=32.0
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeE
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALY 145 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLY 145 (197)
|+.+++..+++.. .+.|+.++|..+|...+.+++.+. +.+..|+
T Consensus 1 m~i~vk~~~G~~~--~l~v~~~~tV~~lK~~i~~~~gi~-----~~~q~L~ 44 (74)
T cd01807 1 MFLTVKLLQGREC--SLQVSEKESVSTLKKLVSEHLNVP-----EEQQRLL 44 (74)
T ss_pred CEEEEEeCCCCEE--EEEECCCCcHHHHHHHHHHHHCCC-----HHHeEEE
Confidence 5666776655543 489999999999999999998622 2356665
No 43
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=56.30 E-value=25 Score=26.85 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=37.8
Q ss_pred eccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeE
Q psy5451 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALY 145 (197)
Q Consensus 91 F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLY 145 (197)
|.+.|.++++.-+++.. +|.|..++|+.+|.+.+.++.-+ .+.+..|+
T Consensus 24 ~~~~M~I~Vk~l~G~~~--~leV~~~~TV~~lK~kI~~~~gi-----p~~~QrLi 71 (103)
T cd01802 24 FYDTMELFIETLTGTCF--ELRVSPFETVISVKAKIQRLEGI-----PVAQQHLI 71 (103)
T ss_pred cCCCEEEEEEcCCCCEE--EEEeCCCCcHHHHHHHHHHHhCC-----ChHHEEEE
Confidence 78889999999777643 48999999999999999988652 23366665
No 44
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=56.09 E-value=18 Score=30.38 Aligned_cols=83 Identities=22% Similarity=0.367 Sum_probs=50.8
Q ss_pred cccccccCCCccccccccceeeccCCCCcc--ccceeEEEEEecccccccceeeEecccccccchheec-cceeeeeecC
Q psy5451 26 LDLFELSEPNDQWNANRLDLFELSEPNDDL--LFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFH-GVMRFYFQDS 102 (197)
Q Consensus 26 ldlf~l~~~~~~~~~~~~~~f~~~~~~~~l--~f~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~lF~-Gvmr~~~~d~ 102 (197)
.+++++|.|. +.||-++=+|..=+ .++|++-.||+-+ ..-.|= ..+.+.+-|. .+.+.. .+
T Consensus 26 I~VyD~s~~~------~~dRLfvI~PenvvlYN~~G~lYyYlegs---s~~~CP-----~nE~avVrf~~~dI~~i--Ne 89 (146)
T PF04798_consen 26 IEVYDRSTPS------DNDRLFVIEPENVVLYNTAGTLYYYLEGS---SSVFCP-----PNEFAVVRFTRNDIKSI--NE 89 (146)
T ss_pred EEEEEcCCCC------CCceEEEEcCceEEEEECCCeEEEEEecc---ccccCC-----CCceEEEEEeccchhhh--hc
Confidence 4778887775 57788888887644 4689999999922 112221 0111222221 111111 34
Q ss_pred CceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 103 GQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 103 g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
.+.+.+-|--|+|- +|+|+|+-
T Consensus 90 ~G~y~~~CT~v~sl--------~LlehF~~ 111 (146)
T PF04798_consen 90 TGVYNIVCTNVSSL--------TLLEHFVT 111 (146)
T ss_pred CCeEEEEEeccccH--------HHHHHHhc
Confidence 56789999999997 59999985
No 45
>PTZ00044 ubiquitin; Provisional
Probab=55.44 E-value=27 Score=23.89 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=28.2
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|++|+|.-+++ +-+++|+.++|..+|...|.++..
T Consensus 1 m~i~vk~~~G~--~~~l~v~~~~tv~~lK~~i~~~~g 35 (76)
T PTZ00044 1 MQILIKTLTGK--KQSFNFEPDNTVQQVKMALQEKEG 35 (76)
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHC
Confidence 56677776655 456899999999999999999876
No 46
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=53.16 E-value=44 Score=24.47 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=31.4
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCC
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENG 151 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nG 151 (197)
+.--|.|-+-+|..|++..+++|.. +.++.|.||..+.++
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~-----l~~~~~~v~~~~~~~ 49 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRG-----LNPECCDVFLLGLDE 49 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcC-----CCHHHEEEEEecCCC
Confidence 3456778899999999999999987 445588888875543
No 47
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=50.97 E-value=58 Score=23.06 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=37.7
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCce
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPL 163 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PL 163 (197)
|.++++.-.++..+ +.|..++|+.++.+.+.+++.. .+.+..|..++ +| +.|.|+ .+|
T Consensus 3 ~~i~Vk~~~G~~~~--~~v~~~~TV~~lK~~I~~~~~i-----~~~~qrL~~~~-~G--~~L~D~-~tL 60 (80)
T cd01792 3 WDLKVKMLGGNEFL--VSLRDSMTVSELKQQIAQKIGV-----PAFQQRLAHLD-SR--EVLQDG-VPL 60 (80)
T ss_pred eEEEEEeCCCCEEE--EEcCCCCcHHHHHHHHHHHhCC-----CHHHEEEEecc-CC--CCCCCC-CCH
Confidence 45666665444433 6889999999999999999872 23366665444 44 355544 454
No 48
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=49.08 E-value=69 Score=21.92 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=37.6
Q ss_pred eeeEEec-cccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCC
Q psy5451 108 TKCIRVA-SDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTD 159 (197)
Q Consensus 108 TKcIRVs-St~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~ 159 (197)
+..+++. +.+|-.++...|-++|.... ..|.|.-..++|+.-.|..+
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~-----~~~~l~y~D~e~d~v~l~sd 58 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDA-----VSFKLKYPDEDGDLVTISSD 58 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCC-----CcEEEEeeCCCCCEEEeCCH
Confidence 5566777 89999999999999998332 58888888888987777664
No 49
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=48.51 E-value=59 Score=24.14 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=35.7
Q ss_pred eeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCcccc
Q psy5451 108 TKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKL 156 (197)
Q Consensus 108 TKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL 156 (197)
+..+|+.+..+-+++.+.+.++|+++. ...|.|--..++|+.--|
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~----~~~f~LkY~Ddegd~v~l 55 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDD----MSAFDLKYLDDDEEWVLL 55 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCC----CCeeEEEEECCCCCeEEe
Confidence 445688999999999999999999653 258888888888874433
No 50
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=47.04 E-value=46 Score=23.97 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.4
Q ss_pred eeeEEeccccchHHHHHHHHhhcCC
Q psy5451 108 TKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 108 TKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
|-.|.|..++|+.+|...|-+++.+
T Consensus 14 t~~l~v~~~~TV~~lK~kI~~~~gi 38 (75)
T cd01799 14 TIWLTVRPDMTVAQLKDKVFLDYGF 38 (75)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCc
Confidence 4448899999999999999999873
No 51
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=47.02 E-value=55 Score=23.80 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=30.1
Q ss_pred EEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCc-cccCCCCCce
Q psy5451 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDE-RKLGTDEKPL 163 (197)
Q Consensus 111 IRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~-RkL~~~E~PL 163 (197)
.|+++.+|..++.+.|..+|-.+- ..-.|......|.. -.|.+++.+|
T Consensus 17 kr~~~~~Tv~~lK~kl~~~~G~~~-----~~mrL~l~~~~~~~~~~l~~d~~~L 65 (84)
T cd01789 17 KKYSRGLTIAELKKKLELVVGTPA-----SSMRLQLFDGDDKLVSKLDDDDALL 65 (84)
T ss_pred EecCCCCcHHHHHHHHHHHHCCCc-----cceEEEEEcCCCCeEeecCCCccEe
Confidence 689999999999999998887322 13333222222321 1366777665
No 52
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=45.84 E-value=47 Score=23.64 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=28.2
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+.+++...++. ..|.|++++|+.++.+.+.++++
T Consensus 2 m~I~Vk~~~G~~--~~l~v~~~~TV~~LK~~I~~~~~ 36 (78)
T cd01804 2 MNLNIHSTTGTR--FDLSVPPDETVEGLKKRISQRLK 36 (78)
T ss_pred eEEEEEECCCCE--EEEEECCcCHHHHHHHHHHHHhC
Confidence 666677764443 56999999999999999999986
No 53
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=44.86 E-value=13 Score=31.51 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=13.8
Q ss_pred cceeeEecccccccchhe
Q psy5451 73 ATKCIRVASDATSQADLL 90 (197)
Q Consensus 73 ~tk~irvss~~~sqd~~l 90 (197)
.-||+||||-.-.++++-
T Consensus 113 vFRCVRVssiDdgedE~A 130 (154)
T PF05142_consen 113 VFRCVRVSSIDDGEDEYA 130 (154)
T ss_pred eEEEEEEecccCccccee
Confidence 348999999777777764
No 54
>KOG3629|consensus
Probab=44.80 E-value=49 Score=33.75 Aligned_cols=81 Identities=25% Similarity=0.325 Sum_probs=56.8
Q ss_pred eeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCce
Q psy5451 96 RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDRE 175 (197)
Q Consensus 96 r~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrE 175 (197)
|+=--|+..--.-|||-|+|-..+++||.--|+|+..|. ++.+|-|--+-+.|.+-.+.+.-.|...- +-.-
T Consensus 613 Rv~~ed~~dG~~YKsI~itsqDk~P~vI~Ral~Khn~ds---d~~eYeLVQllp~~~ElviPdsaNvFYAM-----~~~~ 684 (728)
T KOG3629|consen 613 RVGLEDDTDGANYKSIKITSQDKMPQVIARALEKHNIDS---DKNEYELVQLLPRGGELVIPDSANVFYAM-----APDP 684 (728)
T ss_pred EEEeecCCCCceeeeEEeecCCccHHHHHHHHHHhcccc---CcchhhhheeccCCceEeccCCCceeeec-----CCch
Confidence 333334333345699999999999999999999999888 45689888877777667777776665432 1112
Q ss_pred eeeEeeecC
Q psy5451 176 GRFLLRRID 184 (197)
Q Consensus 176 grFvLk~~~ 184 (197)
.-|+|+.-+
T Consensus 685 ~dflLRkr~ 693 (728)
T KOG3629|consen 685 LDFLLRKRD 693 (728)
T ss_pred hhHHHhhcc
Confidence 556666544
No 55
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=44.51 E-value=60 Score=21.81 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.5
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|.++++..+++.. ++.|+.++|+.++.+.+.+++.
T Consensus 1 m~i~v~~~~g~~~--~~~v~~~~tV~~lK~~i~~~~g 35 (76)
T cd01803 1 MQIFVKTLTGKTI--TLEVEPSDTIENVKAKIQDKEG 35 (76)
T ss_pred CEEEEEcCCCCEE--EEEECCcCcHHHHHHHHHHHhC
Confidence 5566776654433 5999999999999999999886
No 56
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=43.32 E-value=7.9 Score=37.78 Aligned_cols=57 Identities=25% Similarity=0.399 Sum_probs=0.0
Q ss_pred eeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCcc--CCC--CCceeeEEEccCCC
Q psy5451 96 RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMR--MLS--VPEYALYEIHENGD 152 (197)
Q Consensus 96 r~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnR--mLs--~pefaLYevH~nGe 152 (197)
++||.-+...-..--|.|..++|+.|||...|=+|.-+.+ .|. +..|.||++.++||
T Consensus 209 ~Iy~p~s~~~~kPl~v~v~~~atV~e~IGl~L~~Y~~e~~~p~L~~~v~~~~Lrm~EdDGE 269 (523)
T PF05422_consen 209 KIYFPFSSEPEKPLKVCVRATATVEEVIGLILWQYSEEGREPPLKENVNRYCLRMVEDDGE 269 (523)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEeCCCCCCCCEEEEecCCcCHHHHHHHHHHHHHHhccCCCccCChhhEEEEEeccCCC
Confidence 4455555443335567777889999999999988875442 222 33899999999998
No 57
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=42.95 E-value=63 Score=21.70 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=26.6
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++++..+++. .+++|..+.|+.++.+.|.+++.
T Consensus 1 m~i~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g 35 (76)
T cd01806 1 MLIKVKTLTGKE--IEIDIEPTDKVERIKERVEEKEG 35 (76)
T ss_pred CEEEEEeCCCCE--EEEEECCCCCHHHHHHHHhHhhC
Confidence 455666654443 34899999999999999998876
No 58
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=41.31 E-value=63 Score=22.41 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=27.5
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|.+|+|.. .+..+.|..++|+.+|...+.++..
T Consensus 1 mqi~vk~~----~~~~l~v~~~~tV~~lK~~i~~~~g 33 (74)
T cd01793 1 MQLFVRAQ----NTHTLEVTGQETVSDIKAHVAGLEG 33 (74)
T ss_pred CEEEEECC----CEEEEEECCcCcHHHHHHHHHhhhC
Confidence 56777763 3567999999999999999999976
No 59
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=41.08 E-value=68 Score=21.89 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=27.8
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
|+++.+..+++ +..+.|++++|+.++...+.++...
T Consensus 1 m~i~vk~~~g~--~~~l~v~~~~TV~~lK~~i~~~~~i 36 (77)
T cd01805 1 MKITFKTLKQQ--TFPIEVDPDDTVAELKEKIEEEKGC 36 (77)
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHhhCC
Confidence 55666655554 3468999999999999999999864
No 60
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=39.66 E-value=83 Score=26.59 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=33.5
Q ss_pred ceeeeee-cCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccC
Q psy5451 94 VMRFYFQ-DSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLG 157 (197)
Q Consensus 94 vmr~~~~-d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~ 157 (197)
.+++++- ++..+...--+.|+-+.|+.|+++.|..|+..... +..+.-||+++.+--.+-+.
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~--~~~~lrl~ev~~~ki~~~~~ 82 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEE--GTGKLRLWEVSNHKIYKILS 82 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT------EEEEEEETTEEEEEE-
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcC--CcCcEEEEEeECCEEEeecC
Confidence 3454444 44567777889999999999999999999984321 34477888886653333344
No 61
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=38.10 E-value=71 Score=22.00 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=35.8
Q ss_pred eEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCC
Q psy5451 110 CIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTD 159 (197)
Q Consensus 110 cIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~ 159 (197)
-+.+.+.+|-.++...+.++|... ...+.|.-..+.|+.--+..+
T Consensus 15 ~~~~~~~~s~~~L~~~i~~~~~~~-----~~~~~l~Y~D~dgD~V~i~sd 59 (84)
T PF00564_consen 15 IISLPSDVSFDDLRSKIREKFGLL-----DEDFQLKYKDEDGDLVTISSD 59 (84)
T ss_dssp EEEECSTSHHHHHHHHHHHHHTTS-----TSSEEEEEEETTSSEEEESSH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC-----CccEEEEeeCCCCCEEEeCCH
Confidence 478889999999999999999944 347888888888886555543
No 62
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=34.97 E-value=1.1e+02 Score=22.98 Aligned_cols=94 Identities=18% Similarity=0.351 Sum_probs=50.3
Q ss_pred ccccccccCCCccccccccceeeccCCCCccccceeEEEEE-eccccccc-----ceeeEecccccccchheeccceeee
Q psy5451 25 RLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYF-QDSGQKVA-----TKCIRVASDATSQADLLFHGVMRFY 98 (197)
Q Consensus 25 rldlf~l~~~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~-qd~~~~~~-----tk~irvss~~~sqd~~lF~Gvmr~~ 98 (197)
|--||.+...+.+|.-.|+--+.|-...++ |-.|+-. +|..+++. ++.+.+.....+..-+.+.+ .-
T Consensus 16 r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~----~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~~~~~~~---~~ 88 (122)
T PF00638_consen 16 RAKLYRFDKEDKEWKERGVGTLKILKHKET----GKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEKSLVWTA---ID 88 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEEETTS----CEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTTEEEEEE---EE
T ss_pred EEEEEEEeCCCCCccccceeEEEEEEccCC----cceEEEEEEcccCceeEEEEecCCceecccccCCcEEEEEe---cc
Confidence 445666667778888888887777666555 3344433 34444433 22222211111222233322 33
Q ss_pred eecCCceeeeeeEEeccccchHHHHHH
Q psy5451 99 FQDSGQKVATKCIRVASDATSQAVIET 125 (197)
Q Consensus 99 ~~d~g~k~aTKcIRVsSt~TT~dVI~~ 125 (197)
+-|.+++..+-+||+.|.....+....
T Consensus 89 ~~~~~~~~~~~~irf~~~e~a~~f~~~ 115 (122)
T PF00638_consen 89 YADEEGKPETYLIRFKSAEDADEFKKK 115 (122)
T ss_dssp CTTSSSEEEEEEEE-SSHHHHHHHHHH
T ss_pred ccCCCCceEEEEEEECCHHHHHHHHHH
Confidence 456778999999999886544444433
No 63
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=34.56 E-value=2e+02 Score=21.55 Aligned_cols=52 Identities=27% Similarity=0.418 Sum_probs=34.4
Q ss_pred eEEeccccchHHHHHHHHhhcC--CCccCCCCC-ceeeEEEccCCCccccCCCCC
Q psy5451 110 CIRVASDATSQAVIETLIEKFR--PDMRMLSVP-EYALYEIHENGDERKLGTDEK 161 (197)
Q Consensus 110 cIRVsSt~TT~dVI~~LleKFr--pdnRmLs~p-efaLYevH~nGe~RkL~~~E~ 161 (197)
.++|++++|-.++.+.|-+.=+ |=-.+|..+ .|..+.|...|+.--|-|..+
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~in~~ae~EEl~DEsr 57 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSCINQFAEQEELYDESR 57 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEEEBTTSCEEEE--TTS
T ss_pred EEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEEecCCCccceeEcchh
Confidence 4789999999999998876443 333355555 898888999998555555443
No 64
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=33.94 E-value=1.1e+02 Score=20.31 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=26.5
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+...++ +..++|..++|+.++...+.++..
T Consensus 1 i~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~g 35 (72)
T cd01809 1 IEIKVKTLDSQ--THTFTVEEEITVLDLKEKIAEEVG 35 (72)
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHC
Confidence 45555665544 346888999999999999998876
No 65
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=33.61 E-value=98 Score=20.62 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.1
Q ss_pred eeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 96 RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 96 r~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
++.++.+|+. ..|+|+.++|..++...|.+++.
T Consensus 2 ~i~vk~~g~~---~~i~v~~~~tv~~lK~~i~~~~g 34 (71)
T cd01812 2 RVRVKHGGES---HDLSISSQATFGDLKKMLAPVTG 34 (71)
T ss_pred EEEEEECCEE---EEEEECCCCcHHHHHHHHHHhhC
Confidence 3445555443 35889999999999999999887
No 66
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=32.55 E-value=1.2e+02 Score=21.68 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=26.3
Q ss_pred eeeeeecC-CceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDS-GQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~-g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+..+++- |.+ -++.|.+++|+.++.+.+.+++.
T Consensus 2 ~~i~vkt~~Gk~---~~~~v~~~~TV~~LK~~I~~~~~ 36 (73)
T cd01791 2 IEVVCNDRLGKK---VRVKCNPDDTIGDLKKLIAAQTG 36 (73)
T ss_pred EEEEEECCCCCE---EEEEeCCCCcHHHHHHHHHHHhC
Confidence 56666775 433 34588999999999999999986
No 67
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=32.52 E-value=90 Score=27.60 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=48.4
Q ss_pred cccceeeEeccccc---ccchheeccceeee----eecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCcee
Q psy5451 71 KVATKCIRVASDAT---SQADLLFHGVMRFY----FQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYA 143 (197)
Q Consensus 71 ~~~tk~irvss~~~---sqd~~lF~Gvmr~~----~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefa 143 (197)
---.|||||--.+- +.||-.+.+..+-- +.+...+..+-||.|+ ++.-++|+..|.+ .++
T Consensus 60 p~ppktI~~~g~~~~~~~pdErs~a~~i~kAL~~~~~~~~~~~~~pGi~V~-~~~~e~ll~~l~~------------~~~ 126 (197)
T COG1901 60 PDPPKTIRVEGSELRYLNPDERSLAILIKKALDAELGKEQTREVTPGIYVR-NGGFEALLAELAE------------GRS 126 (197)
T ss_pred CCCCEEEEEEcccccccCcchHHHHHHHHHHHHhhccccceeecCCCEEEe-cCCHHHHHHHHhc------------cCc
Confidence 33567888766553 33444433332221 1223334456689998 7777777766554 357
Q ss_pred eEEEccCCC-ccccCCCCCceeee
Q psy5451 144 LYEIHENGD-ERKLGTDEKPLLVQ 166 (197)
Q Consensus 144 LYevH~nGe-~RkL~~~E~PLlvq 166 (197)
||..|++|+ -+..+....|+.+=
T Consensus 127 ly~L~E~G~DI~~v~~~~np~FIl 150 (197)
T COG1901 127 LYYLHEDGRDISEVDLIPNPVFIL 150 (197)
T ss_pred EEEEccCCccHhhcccCCCceEEe
Confidence 999999997 33334366676653
No 68
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=31.57 E-value=75 Score=24.02 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=38.3
Q ss_pred eEEeccccchHHHHHHHHhhcC--CCccCC-CCCceeeEEEccCCCccccCCCCCce
Q psy5451 110 CIRVASDATSQAVIETLIEKFR--PDMRML-SVPEYALYEIHENGDERKLGTDEKPL 163 (197)
Q Consensus 110 cIRVsSt~TT~dVI~~LleKFr--pdnRmL-s~pefaLYevH~nGe~RkL~~~E~PL 163 (197)
.++|++++|-+++...|.+-=+ |=--+| ++..|..+.|...|+.--+-|..+.|
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~A~~~Pl~~~L~d~~~Y~F~~in~~~e~ee~~DEtrRL 59 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQARKMPLGQLLQDESSYIFVSVNQTAEIEEFFDETRRL 59 (78)
T ss_pred eEEccccccHHHHHHHHHHHHHhCCHHHHhCCccceEEEeecCCcccccccccchhe
Confidence 4789999999999998876544 222233 45599999999888755565555554
No 69
>PF15454 LAMTOR: Late endosomal/lysosomal adaptor and MAPK and MTOR activator
Probab=29.55 E-value=47 Score=24.22 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHhhhccccccccccCCCccc
Q psy5451 7 KNEEREALRGVIQQWNANRLDLFELSEPNDQW 38 (197)
Q Consensus 7 ~~~~~~~l~~~i~~wn~~rldlf~l~~~~~~~ 38 (197)
+..| ++|..++++=+.+=+|++++...+..-
T Consensus 35 ~~rE-~aL~~Iv~~Ts~nlIDIs~~~~~~~~~ 65 (76)
T PF15454_consen 35 LQRE-EALNRIVQETSDNLIDISAIDSQGIEQ 65 (76)
T ss_pred HHHH-HHHHHHHHHHhhheeeeccccCccccc
Confidence 3345 999999999999999999966655443
No 70
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=29.27 E-value=1.1e+02 Score=21.94 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=26.8
Q ss_pred eeeeeecCCceeeeeeEE-eccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIR-VASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIR-VsSt~TT~dVI~~LleKFr 131 (197)
|+.+++.-.++. +.+|. |.+++|+.+|...+.++..
T Consensus 1 M~I~vk~~~G~~-~~~l~~v~~~~TV~~lK~~i~~~~g 37 (78)
T cd01797 1 MWIQVRTMDGKE-TRTVDSLSRLTKVEELREKIQELFN 37 (78)
T ss_pred CEEEEEcCCCCE-EEEeeccCCcCcHHHHHHHHHHHhC
Confidence 566666665554 33674 7889999999999999875
No 71
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=29.19 E-value=1.4e+02 Score=20.44 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=25.6
Q ss_pred eeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 97 FYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 97 ~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
.+++...++. .|.|.+++|+.++.+.+.+++.+
T Consensus 3 i~vk~~~g~~---~l~v~~~~TV~~lK~~I~~~~~i 35 (71)
T cd01808 3 VTVKTPKDKE---EIEIAEDASVKDFKEAVSKKFKA 35 (71)
T ss_pred EEEEcCCCCE---EEEECCCChHHHHHHHHHHHhCC
Confidence 4455554442 79999999999999999999873
No 72
>PF13898 DUF4205: Domain of unknown function (DUF4205)
Probab=29.05 E-value=34 Score=31.61 Aligned_cols=62 Identities=27% Similarity=0.437 Sum_probs=44.1
Q ss_pred eccceeeeeecCCceeeeeeEEeccccchHHHHHHH--HhhcC---CCccCCCCCceeeEEEccCCCccccCCCCCcee
Q psy5451 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETL--IEKFR---PDMRMLSVPEYALYEIHENGDERKLGTDEKPLL 164 (197)
Q Consensus 91 F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~L--leKFr---pdnRmLs~pefaLYevH~nGe~RkL~~~E~PLl 164 (197)
|+|+ ++.+..+.-|-|-.-|. |..| +|.++ +.. +|+.|+|++|+++-+|.--.|=..+.-|+
T Consensus 207 ~dg~-----~~~~~~~~l~Gi~~~~~------iG~Lt~~e~~~~~~vG~-~lK~P~~PiWv~~~~~h~svlF~~~~~l~ 273 (342)
T PF13898_consen 207 FDGV-----DDGNGGLTLKGISSRSD------IGFLTLFEHYRYCQVGS-FLKTPKFPIWVVCSESHYSVLFSLNRRLL 273 (342)
T ss_pred cCCc-----cccCCCeEEeccccCCc------eeEEEehhhhcCCCcCC-CCCCCCCCEEEEEeCCceEEEEeCCHHHh
Confidence 8887 45546777777766665 5555 67765 555 89999999999999998666655554443
No 73
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=28.94 E-value=99 Score=22.71 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=22.3
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE 146 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe 146 (197)
-++=|-|+.+.|+.++++.+.+.+.+.. ..++||.
T Consensus 14 G~~Rie~~~~~t~~~L~~kI~~~l~~~~-----~~~~L~~ 48 (80)
T PF11543_consen 14 GMKRIEVSPSSTLSDLKEKISEQLSIPD-----SSQSLSK 48 (80)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHS---T-----TT---BS
T ss_pred CCEEEEcCCcccHHHHHHHHHHHcCCCC-----cceEEEe
Confidence 3566778899999999999999998433 2667763
No 74
>KOG4777|consensus
Probab=28.21 E-value=2e+02 Score=27.27 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=45.7
Q ss_pred cCCceeeeeeEEeccccchHHHHHHHHhhcCCCc--cCCCCCceeeEEEccCCCccccCCCCCceeee
Q psy5451 101 DSGQKVATKCIRVASDATSQAVIETLIEKFRPDM--RMLSVPEYALYEIHENGDERKLGTDEKPLLVQ 166 (197)
Q Consensus 101 d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdn--RmLs~pefaLYevH~nGe~RkL~~~E~PLlvq 166 (197)
|.--++.+-|+||.-..+..||.+.|.|----++ +-.+.|+-++|++...- .+.-.|++.|
T Consensus 248 Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d~~klgc~sapkq~iyv~dd~a-----pdrPqPrldr 310 (361)
T KOG4777|consen 248 DGHVKCISTCFRVPVMPAHAQVVNLLFEYVLDENKLGCISAPKQGIYVIDDRA-----PDRPQPRLDR 310 (361)
T ss_pred cCceEEEEEEeecCCCCcHHHHHHHHHhccCChhhcccccCCCCeEEEecCCC-----CCCCCccccc
Confidence 5556888999999999999999999887655333 34578888999987543 4555676665
No 75
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=27.54 E-value=83 Score=22.70 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=22.8
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeE
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALY 145 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLY 145 (197)
..+-|.|+..++..||++.=..||..+. .+|.|.
T Consensus 7 rr~~vkvtp~~~l~~VL~eac~k~~l~~-----~~~~L~ 40 (65)
T PF11470_consen 7 RRFKVKVTPNTTLNQVLEEACKKFGLDP-----SSYDLK 40 (65)
T ss_dssp -EEEE---TTSBHHHHHHHHHHHTT--G-----GG-EEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCc-----cceEEE
Confidence 4567889999999999999999999554 367665
No 76
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=25.61 E-value=1.6e+02 Score=21.00 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=26.3
Q ss_pred eeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEc
Q psy5451 109 KCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH 148 (197)
Q Consensus 109 KcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH 148 (197)
-=|.|-+.+|.+|++..+++|.. |.+..+.+|-+.
T Consensus 13 t~V~vrpg~ti~d~L~~~~~kr~-----L~~~~~~V~~~~ 47 (71)
T PF02196_consen 13 TVVQVRPGMTIRDALSKACKKRG-----LNPECCDVRLVG 47 (71)
T ss_dssp EEEEE-TTSBHHHHHHHHHHTTT-------CCCEEEEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHcC-----CCHHHEEEEEcC
Confidence 34667799999999999999987 445578888665
No 77
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=24.28 E-value=1e+02 Score=22.95 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=31.5
Q ss_pred eeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCcee-eEEEccCCCccccCCCCCce
Q psy5451 106 VATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYA-LYEIHENGDERKLGTDEKPL 163 (197)
Q Consensus 106 ~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefa-LYevH~nGe~RkL~~~E~PL 163 (197)
-.++.+.|+-+.|+.+||..++.|.. ..+..++-+ =|+.--.|-+--|. .++||
T Consensus 27 ~~~~t~~~~~~~t~~~li~~~l~k~~---~~~~~~~~~~dyvLKV~G~~EyL~-g~~~L 81 (106)
T PF00794_consen 27 QQSFTFQVDPNSTPEELIAQALKKKL---KDLLPPDPEDDYVLKVCGREEYLL-GDHPL 81 (106)
T ss_dssp SEEEEEEEETTS-HHHHHHHHHHHHH---HHTT-CHHHHGEEEEETTSSEEE--SSS-G
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHH---hhcCCcccccCEEEEecCceEEee-CCeee
Confidence 35678888999999999999999922 122222111 34545566555555 45665
No 78
>smart00455 RBD Raf-like Ras-binding domain.
Probab=22.10 E-value=1.3e+02 Score=21.48 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=26.3
Q ss_pred eeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEE
Q psy5451 109 KCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEI 147 (197)
Q Consensus 109 KcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYev 147 (197)
--|-|-+.+|..|++..+++|+.. .+..+.||..
T Consensus 12 ~~V~vrpg~tl~e~L~~~~~kr~l-----~~~~~~v~~~ 45 (70)
T smart00455 12 TVVKVRPGKTVRDALAKALKKRGL-----NPECCVVRLR 45 (70)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCC-----CHHHEEEEEc
Confidence 346677899999999999999983 3346777764
No 79
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=22.09 E-value=2.4e+02 Score=18.95 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=27.0
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
|+...++.+++ ...++|..+.+...+++...++..+
T Consensus 1 I~i~v~~~~~~--~~~~~v~~~~~~~~l~~~~~~~~~i 36 (72)
T PF11976_consen 1 ITIKVRSQDGK--EIKFKVKPTTTVSKLIEKYCEKKGI 36 (72)
T ss_dssp EEEEEEETTSE--EEEEEEETTSCCHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHhhCC
Confidence 34455566666 6678888999999999888888773
No 80
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=21.40 E-value=1.5e+02 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=40.3
Q ss_pred ccchHHHHHHHHhhcCCCc------------cCCCCCceeeEEEccCCCccccCCCCCceeee
Q psy5451 116 DATSQAVIETLIEKFRPDM------------RMLSVPEYALYEIHENGDERKLGTDEKPLLVQ 166 (197)
Q Consensus 116 t~TT~dVI~~LleKFrpdn------------RmLs~pefaLYevH~nGe~RkL~~~E~PLlvq 166 (197)
.+..+++++.+++++||.. ...++..|+++.+..+|+...-+|.+.|--+|
T Consensus 3 ~~~~~~~l~~~~~~~r~~~~~G~vAdYIP~La~vd~~~fgiai~t~dG~~~~aGD~d~~Fsiq 65 (309)
T COG2066 3 SSDDQKALEEIVRAARPLTGGGKVADYIPALAKVDPDLFGIAIVTVDGQVYSAGDADERFSIQ 65 (309)
T ss_pred cchHHHHHHHHHHHhcccccCCcchhhhhHhhcCChhHcEEEEEecCCeEEEccCcCcceeee
Confidence 3456778888899888654 44566699999999999999999988876554
No 81
>PF15583 Imm41: Immunity protein 41
Probab=20.85 E-value=38 Score=28.89 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=38.5
Q ss_pred heeccceeeeeecC-CceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCC
Q psy5451 89 LLFHGVMRFYFQDS-GQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENG 151 (197)
Q Consensus 89 ~lF~Gvmr~~~~d~-g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nG 151 (197)
|..+|.+-.. +- +.---.|+|||.++.---..+..-|+.|. ++|-+|.|+++.++-
T Consensus 86 c~~~G~vnL~--~l~~~~~~~r~IrI~at~EE~~~~~~aL~dF~-----~~p~~YdL~Em~dee 142 (158)
T PF15583_consen 86 CKKNGSVNLH--DLDENDEKDRNIRITATSEENTAINKALKDFA-----RNPLEYDLSEMCDEE 142 (158)
T ss_pred HHhcCCEeHH--HhhcCCCcCceEEEecCHHHHHHHHHHHHHHH-----hCHHhhhHHHhCCHH
Confidence 3355654433 22 12334899999999888889999999998 233499998876543
No 82
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=20.21 E-value=4.3e+02 Score=20.72 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=50.4
Q ss_pred ccccccccCCCccccccccceeeccCCCCc-cccceeEEEEEeccccccc-----ceeeEecccccccchheeccceeee
Q psy5451 25 RLDLFELSEPNDQWNANRLDLFELSEPNDD-LLFHGVMRFYFQDSGQKVA-----TKCIRVASDATSQADLLFHGVMRFY 98 (197)
Q Consensus 25 rldlf~l~~~~~~~~~~~~~~f~~~~~~~~-l~f~Gvmrf~~qd~~~~~~-----tk~irvss~~~sqd~~lF~Gvmr~~ 98 (197)
|--||.+...+..|.-.|+--..|-.+.++ --+.=||| +|..+++. ++.+.++....+...+.|. ...
T Consensus 26 r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR---~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~---~~d 99 (130)
T smart00160 26 RAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMR---RDGVLKVCANHPIFKSMTLKPLAGSNRALKWT---PED 99 (130)
T ss_pred EeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEE---ECCCceEEeccEecCCcEEeecCCCcceEEEe---eee
Confidence 444666666667787777776666555444 33444555 55444443 3333443333332233331 223
Q ss_pred eecCCceeeeeeEEeccccchHHHH
Q psy5451 99 FQDSGQKVATKCIRVASDATSQAVI 123 (197)
Q Consensus 99 ~~d~g~k~aTKcIRVsSt~TT~dVI 123 (197)
|-|+..+-.+-+||+.|.....+..
T Consensus 100 ~~d~~~~~~~~~irfk~~e~a~~f~ 124 (130)
T smart00160 100 FADDIPKLVLYAVRFKTKEEADSFK 124 (130)
T ss_pred cCCCCCceEEEEEEeCCHHHHHHHH
Confidence 4455567889999998765444433
Done!