Query psy5451
Match_columns 197
No_of_seqs 70 out of 72
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 17:54:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ddc_B RAS association domain- 100.0 3.1E-30 1E-34 212.0 10.0 141 12-183 10-163 (163)
2 1wxa_A Afadin, AF-6 protein; R 99.1 8.2E-11 2.8E-15 90.4 6.0 83 105-189 22-114 (116)
3 3tca_A Amyloid beta A4 precurs 98.9 1.9E-09 6.6E-14 87.2 7.0 84 94-186 36-120 (291)
4 1wgr_A Growth factor receptor- 98.9 3.1E-09 1.1E-13 81.0 6.2 86 94-188 11-97 (100)
5 2c5l_C Phosphoinositide-specif 98.4 5.6E-07 1.9E-11 70.5 6.1 83 101-186 14-110 (117)
6 3hk0_A Growth factor receptor- 98.1 3.7E-06 1.3E-10 71.9 6.1 83 94-187 10-93 (256)
7 4gmv_A RAS-associated and plec 98.1 6E-06 2.1E-10 71.6 6.7 72 107-183 42-114 (281)
8 2bye_A Phospholipase C, epsilo 97.8 2.3E-05 7.7E-10 61.2 5.2 77 104-184 21-109 (110)
9 2cs4_A Protein C12ORF2; GTP bi 97.4 5.8E-05 2E-09 57.5 2.7 72 112-190 23-94 (95)
10 3ec8_A Putative uncharacterize 96.5 0.0037 1.3E-07 51.7 5.7 89 91-181 34-133 (166)
11 2uwq_A Apoptosis-stimulating o 96.3 0.0012 4.2E-08 49.5 1.8 64 111-183 23-86 (86)
12 1lfd_A Ralgds; RAL, effector i 95.7 0.02 6.7E-07 43.2 5.6 55 106-162 16-70 (87)
13 1rax_A Protein (RA-domain of R 95.1 0.04 1.4E-06 43.4 5.8 71 106-182 41-111 (115)
14 1rlf_A RLF, RLF-RBD; signal tr 94.9 0.023 7.9E-07 43.1 3.9 55 106-162 19-73 (90)
15 1ef5_A RGL; RAS-binding domain 94.7 0.056 1.9E-06 41.8 5.6 69 107-182 32-101 (103)
16 3kh0_A Ralgds, ralgef, RAL gua 94.1 0.14 4.9E-06 41.4 7.0 74 106-185 38-111 (140)
17 1wgy_A RAP guanine nucleotide 93.3 0.17 5.9E-06 38.8 5.9 74 81-167 2-75 (104)
18 2dhz_A RAP guanine nucleotide 92.6 0.42 1.4E-05 37.5 7.3 77 82-166 3-80 (120)
19 3cf6_E RAP guanine nucleotide 92.2 0.31 1.1E-05 45.9 7.2 77 95-186 355-431 (694)
20 2al6_A Focal adhesion kinase 1 89.1 0.59 2E-05 40.4 5.7 66 94-164 9-75 (375)
21 3ivf_A Talin-1; FERM domain, c 87.9 0.61 2.1E-05 39.8 4.9 54 107-161 13-66 (371)
22 1ef1_A Moesin; membrane, FERM 87.5 1.3 4.4E-05 36.2 6.5 62 95-166 4-65 (294)
23 4dxa_B KREV interaction trappe 83.1 0.73 2.5E-05 38.8 3.0 63 96-169 9-73 (322)
24 4eku_A Protein-tyrosine kinase 82.5 2 6.8E-05 38.2 5.7 73 107-182 38-116 (392)
25 2ylm_A Ubiquitin carboxyl-term 81.7 4 0.00014 37.5 7.6 75 85-163 330-405 (530)
26 3au4_A Myosin-X; protein-prote 81.2 3.3 0.00011 37.4 6.7 71 85-163 204-279 (555)
27 2i1j_A Moesin; FERM, coiled-co 78.4 5.6 0.00019 37.0 7.5 62 95-166 7-68 (575)
28 3ddc_B RAS association domain- 78.0 0.9 3.1E-05 37.4 1.8 59 63-146 81-145 (163)
29 1h4r_A Merlin; FERM, neurofibr 77.5 4 0.00014 33.8 5.6 61 95-166 25-85 (314)
30 3qij_A Protein 4.1; cytoskelet 76.5 3.9 0.00013 34.2 5.3 56 107-167 28-83 (296)
31 2j0j_A Focal adhesion kinase 1 73.3 4.8 0.00016 36.9 5.5 62 95-160 10-72 (656)
32 3ivf_A Talin-1; FERM domain, c 69.2 5.4 0.00018 34.0 4.6 63 96-167 89-155 (371)
33 3tca_A Amyloid beta A4 precurs 61.0 4.1 0.00014 32.5 2.2 30 57-90 33-62 (291)
34 4dbg_A Ranbp-type and C3HC4-ty 60.9 14 0.00048 27.7 5.0 52 79-134 13-64 (105)
35 3mtn_B UBA80, ubcep1, ubiquiti 55.2 24 0.00083 22.9 4.9 37 94-132 3-39 (85)
36 1vd2_A Protein kinase C, IOTA 53.9 36 0.0012 24.9 6.1 53 95-156 9-61 (89)
37 2kj6_A Tubulin folding cofacto 53.9 41 0.0014 24.2 6.3 37 95-131 15-51 (97)
38 3dbh_I NEDD8; cell cycle, acti 53.8 27 0.00094 23.0 5.1 37 93-131 11-47 (88)
39 3pvl_A Myosin VIIA isoform 1; 51.9 26 0.00089 33.1 6.3 88 56-151 213-314 (655)
40 3a9j_A Ubiquitin; protein comp 51.2 25 0.00086 22.2 4.4 35 95-131 1-35 (76)
41 3n3k_B Ubiquitin; hydrolase, p 48.6 26 0.00091 22.8 4.3 36 94-131 3-38 (85)
42 2kan_A Uncharacterized protein 48.6 37 0.0013 23.7 5.3 38 91-131 12-49 (94)
43 1ndd_A NEDD8, protein (ubiquit 47.9 33 0.0011 21.6 4.6 35 95-131 1-35 (76)
44 3v6c_B Ubiquitin; structural g 47.6 37 0.0013 23.0 5.0 39 92-132 15-53 (91)
45 3phx_B Ubiquitin-like protein 47.4 39 0.0013 22.0 5.0 37 93-131 3-39 (79)
46 2wyq_A HHR23A, UV excision rep 44.8 38 0.0013 22.2 4.6 37 92-130 3-39 (85)
47 2dzi_A Ubiquitin-like protein 44.3 49 0.0017 21.3 5.1 36 94-131 7-42 (81)
48 1wjn_A Tubulin-folding protein 43.8 57 0.0019 22.6 5.6 48 111-163 27-76 (97)
49 1wh3_A 59 kDa 2'-5'-oligoadeny 41.8 56 0.0019 21.5 5.1 37 93-131 6-42 (87)
50 3k9o_B Ubiquitin, UBB+1; E2-25 41.3 39 0.0013 22.8 4.3 36 95-132 2-37 (96)
51 1wx7_A Ubiquilin 3; ubiquitin- 41.3 47 0.0016 23.3 4.9 36 93-131 16-51 (106)
52 2kk8_A Uncharacterized protein 39.8 48 0.0016 22.7 4.7 38 92-131 8-45 (84)
53 4fbj_B NEDD8; effector-HOST ta 39.6 43 0.0015 22.7 4.4 35 95-131 1-35 (88)
54 2kjr_A CG11242; UBL, ubiquitin 39.6 1E+02 0.0034 21.9 6.6 37 95-131 16-52 (95)
55 2bwf_A Ubiquitin-like protein 39.5 57 0.002 20.8 4.7 34 95-131 5-38 (77)
56 2bt9_A Lectin; sugar recogniti 38.9 29 0.00098 25.8 3.5 49 60-111 15-76 (90)
57 2faz_A Ubiquitin-like containi 38.7 53 0.0018 21.2 4.6 38 93-131 1-39 (78)
58 4dwf_A HLA-B-associated transc 38.5 54 0.0019 21.9 4.7 36 94-131 5-40 (90)
59 4eew_A Large proline-rich prot 38.5 58 0.002 21.6 4.8 39 91-131 14-52 (88)
60 2i02_A General stress protein 37.5 42 0.0014 24.0 4.2 28 121-150 103-130 (148)
61 1yqb_A Ubiquilin 3; structural 37.1 60 0.0021 22.9 4.9 36 93-131 21-56 (100)
62 1yx5_B Ubiquitin; proteasome, 36.9 54 0.0019 22.5 4.6 35 95-131 1-35 (98)
63 2v1y_A Phosphatidylinositol-4, 35.6 80 0.0027 24.0 5.7 54 110-163 33-89 (108)
64 1wgd_A Homocysteine-responsive 35.1 64 0.0022 22.0 4.7 37 94-130 7-43 (93)
65 2hj8_A Interferon-induced 17 k 34.3 79 0.0027 21.3 5.0 37 93-131 3-39 (88)
66 1wx8_A Riken cDNA 4931431F19; 33.9 1.1E+02 0.0037 20.8 5.7 36 93-131 16-51 (96)
67 2kmc_A Fermitin family homolog 33.7 1.3E+02 0.0046 23.0 6.6 48 96-146 21-69 (102)
68 2kzr_A Ubiquitin thioesterase 32.6 42 0.0015 22.8 3.4 34 95-131 1-35 (86)
69 3m63_B Ubiquitin domain-contai 31.8 36 0.0012 24.2 3.0 33 97-132 31-63 (101)
70 3rt3_B Ubiquitin-like protein 30.5 1.5E+02 0.0051 21.7 6.4 35 95-131 3-37 (159)
71 2ojr_A Ubiquitin; lanthide-bin 30.0 1.1E+02 0.0038 21.6 5.4 42 88-131 25-70 (111)
72 3jyu_A Ubiquitin carboxyl-term 29.6 2.1E+02 0.0071 23.2 7.6 50 110-163 155-204 (231)
73 1y8x_B Ubiquitin-activating en 29.2 25 0.00085 26.1 1.8 22 109-130 7-28 (98)
74 2kdb_A Homocysteine-responsive 29.2 88 0.003 22.4 4.8 38 93-130 22-59 (99)
75 1sif_A Ubiquitin; hydrophobic 28.6 83 0.0028 21.3 4.3 35 95-131 10-44 (88)
76 1wgr_A Growth factor receptor- 28.4 32 0.0011 25.8 2.3 28 59-90 10-37 (100)
77 2l7r_A Ubiquitin-like protein 28.2 87 0.003 21.5 4.5 37 91-131 16-52 (93)
78 4hcn_B Polyubiquitin, ubiquiti 28.0 85 0.0029 21.6 4.4 36 94-131 22-57 (98)
79 3vdz_A Ubiquitin-40S ribosomal 28.0 1E+02 0.0036 21.9 5.0 36 94-131 35-70 (111)
80 4a3p_A Ubiquitin carboxyl-term 27.7 2.1E+02 0.0071 22.9 7.2 48 109-160 142-189 (217)
81 1q1o_A Cell division control p 27.6 1.1E+02 0.0039 22.8 5.3 64 95-159 8-75 (98)
82 2qmm_A UPF0217 protein AF_1056 27.4 41 0.0014 27.8 3.0 94 59-165 49-149 (197)
83 1hqz_1 ABP1P, actin-binding pr 27.2 92 0.0032 22.9 4.7 40 123-174 52-91 (141)
84 1oey_A P67-PHOX, neutrophil cy 26.7 79 0.0027 22.9 4.1 33 94-132 7-39 (83)
85 2bps_A YUKD protein; ubiquitin 26.2 61 0.0021 23.2 3.4 28 108-135 18-45 (81)
86 2uyz_B Small ubiquitin-related 26.1 1.1E+02 0.0038 19.7 4.5 35 95-131 4-38 (79)
87 3b08_A Polyubiquitin-C, ubiqui 26.1 87 0.003 22.3 4.3 35 95-131 1-35 (152)
88 2kc2_A Talin-1, F1; FERM, adhe 25.2 2.2E+02 0.0075 22.0 6.7 36 107-146 22-57 (128)
89 1j8c_A Ubiquitin-like protein 25.1 1.2E+02 0.0042 22.3 5.0 36 93-131 31-66 (125)
90 3u30_A Ubiquitin, linear DI-ub 25.0 1.1E+02 0.0038 22.9 4.9 38 92-131 18-55 (172)
91 2klc_A Ubiquilin-1; ubiquitin- 24.9 1.3E+02 0.0046 21.0 5.0 36 93-131 24-59 (101)
92 1uel_A HHR23B, UV excision rep 24.8 97 0.0033 21.2 4.2 34 95-130 1-34 (95)
93 1ofz_A Fucose-specific lectin; 24.6 1.1E+02 0.0037 26.3 5.3 54 59-112 176-242 (312)
94 3aia_A UPF0217 protein MJ1640; 24.5 1E+02 0.0035 25.7 5.0 95 59-165 54-160 (211)
95 1wxv_A BAG-family molecular ch 24.2 1.5E+02 0.0052 19.9 5.0 35 94-131 7-46 (92)
96 3rt3_B Ubiquitin-like protein 24.1 1.3E+02 0.0044 22.0 5.0 38 92-131 79-116 (159)
97 1wf9_A NPL4 family protein; be 23.5 1.4E+02 0.005 21.1 5.0 34 95-131 8-42 (107)
98 1uh6_A Ubiquitin-like 5; beta- 22.6 1.3E+02 0.0046 22.0 4.8 35 95-131 29-63 (100)
99 1wy8_A NP95-like ring finger p 22.3 1.7E+02 0.0059 19.2 5.0 38 93-131 6-44 (89)
100 1wgh_A Ubiquitin-like 3, HCG-1 21.8 2E+02 0.0068 21.4 5.7 38 94-133 16-53 (116)
101 1ofz_A Fucose-specific lectin; 21.3 1E+02 0.0035 26.4 4.5 52 60-111 129-194 (312)
102 1t0y_A Tubulin folding cofacto 20.6 2.5E+02 0.0085 20.4 7.4 36 95-131 7-42 (122)
103 1ttn_A DC-UBP, dendritic cell- 20.4 1.6E+02 0.0054 20.6 4.7 37 93-131 22-58 (106)
104 2lgx_A Fermitin family homolog 20.2 1.1E+02 0.0037 23.9 3.9 37 107-146 36-72 (112)
No 1
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=99.96 E-value=3.1e-30 Score=212.05 Aligned_cols=141 Identities=22% Similarity=0.345 Sum_probs=108.7
Q ss_pred HHHHHHHHhhhccccccccccCCCccccccccceeeccCCCCccccceeEEEEEecccccccceeeEeccccccc---ch
Q psy5451 12 EALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQ---AD 88 (197)
Q Consensus 12 ~~l~~~i~~wn~~rldlf~l~~~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~~sq---d~ 88 (197)
+.+..-|+++|+.--+-+. |- + ++|-.|.|.|++-++ ++|+|.|....... |.
T Consensus 10 ~ei~~kI~~YN~~~~~~l~-------------M~--l---~~dgsytGFIkV~l~------L~RPv~v~~~~~~~s~~~~ 65 (163)
T 3ddc_B 10 QEIKQKIDSYNSREKHCLG-------------MK--L---SEDGTYTGFIKVHLK------LRRPVTVPAGIRPQSIYDA 65 (163)
T ss_dssp HHHHHHHHHHHHTSCGGGS-------------CE--E---CGGGCEEEEEEEEEE------EEEEECCC-----------
T ss_pred HHHHHHHHHHHHhcccCce-------------EE--E---CCCCcccceEEEEEE------eccCCcCCCCcCCcccccc
Confidence 5677789999987765544 11 1 467789999999999 99999998543211 11
Q ss_pred hee---ccce----eeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE-EccCCC--ccccCC
Q psy5451 89 LLF---HGVM----RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE-IHENGD--ERKLGT 158 (197)
Q Consensus 89 ~lF---~Gvm----r~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe-vH~nGe--~RkL~~ 158 (197)
+-= ++.+ -|| -- +-++|||||||+|||+|||++||+||++++ ++.+||||+ +|++|+ .|||++
T Consensus 66 ~~~~~~~~~~~~~TSff-lP---~gs~k~v~VsS~tTt~eVI~~LL~KFkV~d---nP~kFALye~vh~~gev~~RKL~d 138 (163)
T 3ddc_B 66 IKEVNPAATTDKRTSFY-LP---LDAIKQMHISSTTTVSEVIQGLLDKFMVVD---NPQKFALFKRIHKDGQVLFQKLSI 138 (163)
T ss_dssp --------------CEE-EE---EEEEEEEEEETTCCHHHHHHHHHHHTTCCS---CGGGEEEEEEEEETTEEEEEECCT
T ss_pred ccccccccccccceeEE-CC---CCceEEEEEccCCcHHHHHHHHHHHhcccC---ChhheEEEEEEccCCcEEEEECCC
Confidence 110 1110 122 12 469999999999999999999999999887 456999999 999999 999999
Q ss_pred CCCceeeeeeccCCCceeeeEeeec
Q psy5451 159 DEKPLLVQLNWHKDDREGRFLLRRI 183 (197)
Q Consensus 159 ~E~PLlvqL~wg~ddrEgrFvLk~~ 183 (197)
+|+||++||+|||++++++|+||+|
T Consensus 139 ~E~PL~lrL~~Gp~e~~~~fvLkEn 163 (163)
T 3ddc_B 139 ADYPLYLRLLAGPDTDVLSFVLKEN 163 (163)
T ss_dssp TCCHHHHHHHHCSCTTTCEEEEEEC
T ss_pred cCcCHhHHhhcCCCCCeEEEEeccC
Confidence 9999999999999999999999987
No 2
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=99.11 E-value=8.2e-11 Score=90.36 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=70.4
Q ss_pred eeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEc----------cCCCccccCCCCCceeeeeeccCCCc
Q psy5451 105 KVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH----------ENGDERKLGTDEKPLLVQLNWHKDDR 174 (197)
Q Consensus 105 k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH----------~nGe~RkL~~~E~PLlvqL~wg~ddr 174 (197)
-..-|-|.|+...|+.+||...|+||-.+.. ++..|.|++|. ..+.+|.|.++|+||.++.+|.++..
T Consensus 22 ~~~Yksvlvt~~tta~~vV~eaLekygL~~~--~~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~Pl~i~~~w~~~~g 99 (116)
T 1wxa_A 22 NIPYKTILLSTTDTADFAVAESLEKYGLEKE--NPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSDKG 99 (116)
T ss_dssp SSCCEEEECCSSCCHHHHHHHHHHHHTCSSS--CTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHHHHTCCGGGC
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHhCCCCC--CchheEEEEEECccccccccCCCceEEECCCCCCHHHHHHhccccCC
Confidence 4566889999999999999999999986652 45699999986 33568999999999999999998866
Q ss_pred eeeeEeeecCCCcee
Q psy5451 175 EGRFLLRRIDEATNV 189 (197)
Q Consensus 175 EgrFvLk~~~~~~~~ 189 (197)
..+|.||..+...|.
T Consensus 100 ~~~F~Lrrr~~~~~~ 114 (116)
T 1wxa_A 100 ILVFQLKRRPPSGPS 114 (116)
T ss_dssp CEEEEEEECCSSSSC
T ss_pred ceEEEEEecCCCCCC
Confidence 889999987765543
No 3
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=98.92 E-value=1.9e-09 Score=87.21 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=70.1
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCC-ccccCCCCCceeeeeeccCC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGD-ERKLGTDEKPLLVQLNWHKD 172 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe-~RkL~~~E~PLlvqL~wg~d 172 (197)
++++|+.|+ ++|+|.|+++||+.||++.|++|+++.+ .+.++|||+++++. +|.|.+.|+++-+...|..+
T Consensus 36 ~v~v~~~d~----~~k~i~v~~~~ta~ev~~~L~~k~~~~~----~~~~~l~E~~~~~~ler~l~d~E~v~~v~~~w~~~ 107 (291)
T 3tca_A 36 VVKVHMDDS----STKSLMVDERQLARDVLDNLFEKTHCDC----NVDWCLYEIYPELQIERVFEDHENVVEVLSDWTRD 107 (291)
T ss_dssp EEEEECTTS----CEEEEEEETTCBHHHHHHHHHHHHCCCC----CTTEEEEEEETTTTEEEECCTTSBHHHHHTTSCTT
T ss_pred EEEEEcCCC----ceEEEEeCCCCcHHHHHHHHHHHhCCCC----CCCeEEEEeccccccceecccchhHHHHHHhhccc
Confidence 444444343 5899999999999999999999999765 45799999999976 89999999999999999885
Q ss_pred CceeeeEeeecCCC
Q psy5451 173 DREGRFLLRRIDEA 186 (197)
Q Consensus 173 drEgrFvLk~~~~~ 186 (197)
.+.+|+++.+.++
T Consensus 108 -~~~~l~~~~~~~k 120 (291)
T 3tca_A 108 -TENKVLFLEKEER 120 (291)
T ss_dssp -CCCEEEEEECTTT
T ss_pred -cccchhhhhhhhh
Confidence 5778888877654
No 4
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=98.87 E-value=3.1e-09 Score=81.01 Aligned_cols=86 Identities=28% Similarity=0.411 Sum_probs=73.4
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccC-CCccccCCCCCceeeeeeccCC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN-GDERKLGTDEKPLLVQLNWHKD 172 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~n-Ge~RkL~~~E~PLlvqL~wg~d 172 (197)
++|||+.|+ .+|.|=|.++||+.||++.|.+|.++.. .+.++|||+++. |-+|.+.+.|+++=+...|.-
T Consensus 11 vvkvf~~Dg----ssksi~V~~~~Ta~dv~~~L~~K~~~~~----~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~- 81 (100)
T 1wgr_A 11 VVKVYSEDG----ACRSVEVAAGATARHVCEMLVQRAHALS----DETWGLVECHPHLALERGLEDHESVVEVQAAWPV- 81 (100)
T ss_dssp EEEEEETTS----CEEEEEECTTCCHHHHHHHHHCSSSCCC----CCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCS-
T ss_pred EEEEEecCC----CEEEEEECCCCcHHHHHHHHHHHcCCCC----CCCeEEEEecCCCCcEEeccCchhHHHHHhhCcc-
Confidence 456666565 6789999999999999999999999655 679999999988 777999999999999999965
Q ss_pred CceeeeEeeecCCCce
Q psy5451 173 DREGRFLLRRIDEATN 188 (197)
Q Consensus 173 drEgrFvLk~~~~~~~ 188 (197)
+.+-||+++++..+..
T Consensus 82 ~s~nr~~F~kr~~Ky~ 97 (100)
T 1wgr_A 82 GGDSRFVFRKNFASGP 97 (100)
T ss_dssp SSCCEEEECSCCSSSC
T ss_pred CCCcEEEEecchhccC
Confidence 5678999999887743
No 5
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=98.36 E-value=5.6e-07 Score=70.53 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=67.8
Q ss_pred cCCceeeeeeEEeccccchHHHHHHHHhhcCCC---ccCCCCCceeeEEEcc-CC----------CccccCCCCCceeee
Q psy5451 101 DSGQKVATKCIRVASDATSQAVIETLIEKFRPD---MRMLSVPEYALYEIHE-NG----------DERKLGTDEKPLLVQ 166 (197)
Q Consensus 101 d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpd---nRmLs~pefaLYevH~-nG----------e~RkL~~~E~PLlvq 166 (197)
+-....+-+-|+|+...|++|||..-|.||+-. ....++.+|.|-|+.. .| -.|.|.++|+||..|
T Consensus 14 ~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL~~~E~~l~~q 93 (117)
T 2c5l_C 14 DVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVLLDQECVFQAQ 93 (117)
T ss_dssp SCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEECCTTSBHHHHH
T ss_pred cCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEecCCCCCHHHHH
Confidence 444566778899999999999999999999944 1123566999999764 22 179999999999999
Q ss_pred eeccCCCceeeeEeeecCCC
Q psy5451 167 LNWHKDDREGRFLLRRIDEA 186 (197)
Q Consensus 167 L~wg~ddrEgrFvLk~~~~~ 186 (197)
-+|.++ |||+|++..+.
T Consensus 94 s~Wk~~---gRF~Lk~r~~~ 110 (117)
T 2c5l_C 94 SKWKGA---GKFILKLKEQV 110 (117)
T ss_dssp HTCSSC---EEEEEEETTTC
T ss_pred HhhCcC---ceEEEEECccc
Confidence 999977 99999998877
No 6
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=98.10 E-value=3.7e-06 Score=71.86 Aligned_cols=83 Identities=23% Similarity=0.322 Sum_probs=63.1
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCC-ccccCCCCCceeeeeeccCC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGD-ERKLGTDEKPLLVQLNWHKD 172 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe-~RkL~~~E~PLlvqL~wg~d 172 (197)
++++|.-| | ++|-|.|+.+||+.||+..|++|-+.. +.+..+|+|++++++ +|.|-+.|..|=|...|+.
T Consensus 10 ivkv~~~d-~---ss~~l~V~~~mta~ev~~~l~~k~~~~----~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s- 80 (256)
T 3hk0_A 10 DVKVFSED-G---TSKVVEILADMTARDLCQLLVYKSHSV----DDNSWTLVEHHPHLGLERCLEDHELVVQVESTMAS- 80 (256)
T ss_dssp EEEEEETT-S---CEEEEEECTTCBHHHHHHHHHCCC-----------EEEEEEETTTTEEEECCTTSBHHHHHHTCCS-
T ss_pred EEEEEecC-C---cEEEEEECCCCCHHHHHHHHHHhcCCC----CCCCEEEEEECCCcccccccccchhHHHHHhccCC-
Confidence 34555433 3 799999999999999999999997643 467999999999987 9999999988877777754
Q ss_pred CceeeeEeeecCCCc
Q psy5451 173 DREGRFLLRRIDEAT 187 (197)
Q Consensus 173 drEgrFvLk~~~~~~ 187 (197)
+.+|+++.+.++.
T Consensus 81 --~~~l~f~k~~~ky 93 (256)
T 3hk0_A 81 --ESKFLFRKNYAKY 93 (256)
T ss_dssp --SCEEEEEECTTTT
T ss_pred --CceEEEecccchh
Confidence 5689999876644
No 7
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.06 E-value=6e-06 Score=71.59 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=62.6
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCC-ccccCCCCCceeeeeeccCCCceeeeEeeec
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGD-ERKLGTDEKPLLVQLNWHKDDREGRFLLRRI 183 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe-~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~ 183 (197)
.+|.|.|+.+||+.||++.|.+|=++.+ .+..+|||++++++ +|.|.+.|+.+=|...|..|. +.+|+++.+
T Consensus 42 ss~~l~V~~~~TA~dv~~~L~~k~~~~~----~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds-~n~l~f~~~ 114 (281)
T 4gmv_A 42 SSKTMMVDERQTVRQVLDNLMDKSHCGY----SLDWSLVETVSELQMERIFEDHENLVENLLNWTRDS-QNKLIFMER 114 (281)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHSCCCC----CTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTC-CCEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHhcCCCC----CCCeEEEEEcCCccceeccccchhHHHHHHhcccCC-CceEEEEec
Confidence 5899999999999999999999998543 67999999999975 899999999999999998865 466777665
No 8
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=97.81 E-value=2.3e-05 Score=61.19 Aligned_cols=77 Identities=13% Similarity=0.330 Sum_probs=59.3
Q ss_pred ceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEE-c-cCCC---------ccccCCCCCceeeeeeccCC
Q psy5451 104 QKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEI-H-ENGD---------ERKLGTDEKPLLVQLNWHKD 172 (197)
Q Consensus 104 ~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYev-H-~nGe---------~RkL~~~E~PLlvqL~wg~d 172 (197)
+++|. ++|++..|+.|||...|.|.+-... ++.+|.|.|. . .+.+ .|.|.++|.||-.|=.|.+.
T Consensus 21 ePftI--~~~~~~STAkdvl~qaL~ka~~~~~--~~~~YvL~EE~v~~~~ek~~~~~~~~qRvL~~~E~vl~aqs~Wk~~ 96 (110)
T 2bye_A 21 EPFTV--FTINGGTKAKQLLQQILTNEQDIKP--VTTDYFLMEEKYFISKEKNECRKQPFQRAIGPEEEIMQILSSWFPE 96 (110)
T ss_dssp SSSEE--EECCTTCCHHHHHHHHHCCSSSSCC--CCCSEEEEEECCCCSSSSCSCTTSCCEEEECSSSCHHHHHHHCCTT
T ss_pred CCcEE--EEecCCCcHHHHHHHHHHHhcCCCC--CcccEEEEEEEeccccccCCccCCceeeecCCCccHHHHHhhhCCC
Confidence 45554 5778888889999999999983331 4569999996 2 1111 58899999999999999987
Q ss_pred -CceeeeEeeecC
Q psy5451 173 -DREGRFLLRRID 184 (197)
Q Consensus 173 -drEgrFvLk~~~ 184 (197)
.-.|||+||+-.
T Consensus 97 egy~GRFiLk~re 109 (110)
T 2bye_A 97 EGYMGRIVLKTQQ 109 (110)
T ss_dssp TTTCCCEEEEESC
T ss_pred CCcceeEEEEecC
Confidence 448999999743
No 9
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=97.45 E-value=5.8e-05 Score=57.47 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=60.3
Q ss_pred EeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeeecCCCceee
Q psy5451 112 RVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNVS 190 (197)
Q Consensus 112 RVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~~~~~~~~ 190 (197)
=|+..+|++|||..|++--- .+..|.|-|.-.+- +|.|.+.|+||-+--.||+.-.|-+|+|++.+...+.+
T Consensus 23 GvT~~TTC~DVV~aL~~~~G------~~~~y~LvE~wRg~-ER~L~~~~r~l~~l~~wG~~~~eV~F~Lr~~~~~~p~~ 94 (95)
T 2cs4_A 23 GVTEVTTCQEVVIALAQAIG------RTGRYTLIEKWRDT-ERHLAPHENPIISLNKWGQYASDVQLILRRTGPSGPSS 94 (95)
T ss_dssp SBCSSSCHHHHHHHHHHHHS------CCSEEEEEEEETTE-EEECCSSSCHHHHHHTTGGGSTTCEEEEEEEECCCCCC
T ss_pred CCCCCCcHHHHHHHHHhccC------CCccEEEEEecCCC-eecCCCcccHHHHHHHhCcCCCceEEEEEECCCCCCCC
Confidence 47889999999999999522 24589999988554 69999999999988889999999999999988776543
No 10
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens}
Probab=96.52 E-value=0.0037 Score=51.73 Aligned_cols=89 Identities=24% Similarity=0.449 Sum_probs=65.0
Q ss_pred eccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEc-cCC-------C--ccccCCCC
Q psy5451 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH-ENG-------D--ERKLGTDE 160 (197)
Q Consensus 91 F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH-~nG-------e--~RkL~~~E 160 (197)
--|+|+.|=-+-+.-.--|-|-.+...|+.+||..-||||-.+- -++..|+|-.|- ..| . .|.|.|+|
T Consensus 34 ~PG~LKIfG~~L~~G~~YKSvLas~rstA~elVkEALERYgL~k--e~~~~y~Lcdvig~pG~~~~~w~~e~~rvLgd~E 111 (166)
T 3ec8_A 34 APGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDP--RQAGQYVLCDVVGQAGDAGQRWQARCFRVFGDSE 111 (166)
T ss_dssp CEEEEEEECCC--CCSCCEEEEEETTCCHHHHHHHHHHHTTSCG--GGGGGEEEEEEEC--------CCCCEEEECCTTC
T ss_pred CCcceEecccccCCCCCceeeeccccccHHHHHHHHHHHhccCc--CCcceeEEEEeecCCCCCcccccccceeecCCCC
Confidence 45888888222223445589999999999999999999998644 123379887753 111 1 47999999
Q ss_pred CceeeeeeccCCCc-eeeeEee
Q psy5451 161 KPLLVQLNWHKDDR-EGRFLLR 181 (197)
Q Consensus 161 ~PLlvqL~wg~ddr-EgrFvLk 181 (197)
+||++|..|.+..- .-||=|+
T Consensus 112 cPL~iq~lW~p~~g~~RrFEl~ 133 (166)
T 3ec8_A 112 KPLLIQELWKPREGLSRRFELR 133 (166)
T ss_dssp CHHHHHHHCCCCTTCCEEEEEE
T ss_pred CceeehcccCCCccchhhhhhh
Confidence 99999999999977 6689443
No 11
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=96.35 E-value=0.0012 Score=49.46 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=54.2
Q ss_pred EEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeeec
Q psy5451 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRI 183 (197)
Q Consensus 111 IRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~ 183 (197)
|=|+-.+|++||| .|++. | ....|.|-|.-.+. +|.|.++|+||-+--.||+.-.+-+|+|++.
T Consensus 23 vgvT~~TTC~DVV-aL~~~--~-----G~~~~~LvE~WR~~-ER~L~~~er~l~~l~~WG~~~~eV~F~Lr~~ 86 (86)
T 2uwq_A 23 VPVTPETICRDVV-DLCKE--P-----GESDCHLAEVWCGS-ERPVADNERMFDVLQRFGSQRNEVRFFLRHE 86 (86)
T ss_dssp EEECTTCBSHHHH-HHSCS--S-----CSSSCEEEEEETTE-EEEECTTCBHHHHHHHHCSCGGGCEEEEECC
T ss_pred cCCCCCCcHHHHH-HHHHc--c-----CCCcEEEEeeeCCC-cccCCCcccHHHHHHHHcccCCceEEEEecC
Confidence 3477889999999 88753 1 22689999998886 5999999999999999999999999999863
No 12
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=95.66 E-value=0.02 Score=43.21 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=45.0
Q ss_pred eeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCc
Q psy5451 106 VATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKP 162 (197)
Q Consensus 106 ~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~P 162 (197)
.--|||+|+|...|++||..-|+||..+.. .+.+|.|.-+-+.|.+=.+.+.-.+
T Consensus 16 n~YKSI~ltsqDrtp~vI~~al~Khnl~~~--~~~~y~L~Q~Lp~~kEL~iPd~aNv 70 (87)
T 1lfd_A 16 NMYKSILVTSQDKAPTVIRKAMDKHNLDED--EPEDYELLQIISEDHKLKIPENANV 70 (87)
T ss_dssp EEEEEEEEETTCBHHHHHHHHHHHTTCCSS--CGGGEEEEEESSSSCEEECCTTSBH
T ss_pred cEEEEEEEecCCCcHHHHHHHHHHcCCCCC--CccceEEEEEcCCCCEEecCCCccE
Confidence 455999999999999999999999997762 2569999999987776677665544
No 13
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=95.09 E-value=0.04 Score=43.39 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=52.1
Q ss_pred eeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeee
Q psy5451 106 VATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182 (197)
Q Consensus 106 ~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~ 182 (197)
.--|||+|+|...|++||.--|+||..+.. .+.+|.|.-+-+.|.+=.+.+.-.+-..==. --...|+|+.
T Consensus 41 n~YKSIlltsqDktp~VI~raL~Khnl~~~--~~~~y~L~Q~Lp~~kEL~iPd~aNVFYAm~~----s~~~dFvLR~ 111 (115)
T 1rax_A 41 NMYKSILVTSQDKAPAVIRKAMDKHNLEEE--EPEDYELLQILSDDRKLKIPENANVFYAMNS----TANYDFVLKK 111 (115)
T ss_dssp CCCEEEEEETTCCHHHHHHHHHHHHTCTTS--CSTTEEEEEECSSSCEEEECTTSCHHHHSCT----TSCCEEEEEE
T ss_pred cEEEEEEEecCCCcHHHHHHHHHHcCCCCC--CccceEEEEEcCCCCeEecCCCcceEEEEcC----CCCccEEEee
Confidence 445999999999999999999999997762 3559999999987776677665544321100 1356677764
No 14
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=94.93 E-value=0.023 Score=43.07 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=46.4
Q ss_pred eeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCc
Q psy5451 106 VATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKP 162 (197)
Q Consensus 106 ~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~P 162 (197)
.-.|||+|+|...|++||..-|+||..+.. .+.+|.|.-+-+.|.+=.+.+.-.+
T Consensus 19 n~YKSIlltsqDktp~vI~~al~Khnl~~~--~~~~y~L~Q~Lp~~kEL~iPd~aNv 73 (90)
T 1rlf_A 19 SVYKSILVTSQDKAPSVISRVLKKNNRDSA--VASEFELVQLLPGDRELTIPHSANV 73 (90)
T ss_dssp CSCCEEEEETTCCCTTHHHHHHHHTTTTSC--CCCCEEEEETTTTCEECCTTSCSTT
T ss_pred ceEEEEEEecCCCcHHHHHHHHHHcCCCCC--ChhheEEEEEcCCCCEEecCCCccE
Confidence 467999999999999999999999997763 4669999999998777777766554
No 15
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=94.69 E-value=0.056 Score=41.83 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=52.9
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCC-CceeeeEeee
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKD-DREGRFLLRR 182 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~d-drEgrFvLk~ 182 (197)
-.|||+|+|...|++||..-|+||..+.. .+.+|.|.-+-+.|.+=.+.+.-.+-.. -+ .-...|+|+.
T Consensus 32 ~YKSIlltsqDrtp~VI~raL~Khnl~~~--~~~~y~L~Q~Lp~~kEL~iPd~aNVFYA-----m~~~~~~~F~LR~ 101 (103)
T 1ef5_A 32 MYKSIMLTSQDKTPAVIQRAMSKHNLESD--PAEEYELVQVISEDKELVIPDSANVFYA-----MNSQVNFDFILRK 101 (103)
T ss_dssp CCCCBCCSSCCCTHHHHHHHTTTTTCCCC--SSSSEEEEEECSSSCCEESSCCCCTTTT-----TCCCSCEEEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHcCCCCC--ChhheEEEEEcCCCCEEecCCCcceEEE-----EcCCCCccEEEee
Confidence 37999999999999999999999997773 3469999999998777777766554321 11 1267788763
No 16
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=94.08 E-value=0.14 Score=41.40 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=56.5
Q ss_pred eeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEeeecCC
Q psy5451 106 VATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDE 185 (197)
Q Consensus 106 ~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvLk~~~~ 185 (197)
.--|||.|+|...|++||.-.|+|+.++.. .+.+|.|.-+-++|.+=.+.+.-.+-..= + ..-.+-|+|+.-..
T Consensus 38 nlYKSIllTsqDrtp~VI~rAL~Khnl~~~--~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM-~---~sa~~dFvLR~k~~ 111 (140)
T 3kh0_A 38 NMYKSILVTSQDKAPAVIRKAMDKHNLEEE--EPEDYELLQILSDDRKLKIPENANVFYAM-N---STANYDFVLKKRTF 111 (140)
T ss_dssp EEEEEEEEETTCBHHHHHHHHHHHTTCTTS--CGGGEEEEEEEETTEEEECCTTCBHHHHS-C---TTSCCEEEEEECCC
T ss_pred cEEEEEEeecccccHHHHHHHHHHhCCCCC--chhceEEEEEcCCCCeEecCCCCceEEEe-c---CCCCccEEEeecCC
Confidence 556999999999999999999999998773 23599999999888777777666553321 1 12467899987653
No 17
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=93.32 E-value=0.17 Score=38.78 Aligned_cols=74 Identities=16% Similarity=0.343 Sum_probs=54.4
Q ss_pred ccccccchheeccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCC
Q psy5451 81 SDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDE 160 (197)
Q Consensus 81 s~~~sqd~~lF~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E 160 (197)
|..++-|+|+| |+|+-|. .+.| ||+.-.+|+++|+....+|..- ...++.|-+|--+||+..|+++|
T Consensus 2 ~~~~~sD~i~~----~Vy~~Dh--sy~t--vr~~v~~sa~eIl~~va~kl~~-----~~e~l~Lv~v~ssGEk~~lqp~d 68 (104)
T 1wgy_A 2 SSGSSGEEIFC----HVYITEH--SYVS--VKAKVSSIAQEILKVVAEKIQY-----AEEDLALVAITFSGEKHELQPND 68 (104)
T ss_dssp CCCCCSSCCCE----EEECSSS--CEEE--ECCCTTCBSHHHHHHHHHHHTS-----CGGGEEEEEECSSCCCCBCCTTS
T ss_pred CCCCCCCceEE----EEEeccC--ceEE--EEEeccchHHHHHHHHHHHhcC-----CccceEEEEEccCCcEeecCCcc
Confidence 34456678876 6776544 2444 5666667779999999999971 12278999999999999999999
Q ss_pred Cceeeee
Q psy5451 161 KPLLVQL 167 (197)
Q Consensus 161 ~PLlvqL 167 (197)
-=+.-.|
T Consensus 69 ~si~tsL 75 (104)
T 1wgy_A 69 LVISKSL 75 (104)
T ss_dssp BSSCCSS
T ss_pred eEEEeec
Confidence 6655444
No 18
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=92.56 E-value=0.42 Score=37.48 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=54.6
Q ss_pred cccccchheeccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC-CCccCCCCCceeeEEEccCCCccccCCCC
Q psy5451 82 DATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR-PDMRMLSVPEYALYEIHENGDERKLGTDE 160 (197)
Q Consensus 82 ~~~sqd~~lF~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr-pdnRmLs~pefaLYevH~nGe~RkL~~~E 160 (197)
..+..|+|++ |+|+-|. .+.| ||+.-.+|+++|+....+|.. .+..--...++.|-+|--+||+..|+++|
T Consensus 3 ~~~~~Dei~~----~VY~~Dh--sy~t--vr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d 74 (120)
T 2dhz_A 3 SGSSGDEIFC----RVYMPDH--SYVT--IRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTE 74 (120)
T ss_dssp CCSSCCCEEE----CEECTTS--CCCC--EEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTC
T ss_pred CCCCCCcEEE----EEEeccC--ceEE--EEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcc
Confidence 3455577776 6776544 2444 677777788999999999997 23211123379999999999999999988
Q ss_pred Cceeee
Q psy5451 161 KPLLVQ 166 (197)
Q Consensus 161 ~PLlvq 166 (197)
.=+.-.
T Consensus 75 ~sv~ts 80 (120)
T 2dhz_A 75 DCVFTA 80 (120)
T ss_dssp SCHHHH
T ss_pred eEEEee
Confidence 654433
No 19
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=92.17 E-value=0.31 Score=45.89 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=61.9
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCc
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDR 174 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddr 174 (197)
.|+|+-|. ..+-|||.=.+|+++|+...++||. ...+|+|.+|--+||...+.+++.-+..++. .
T Consensus 355 ~~v~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~-----~ 419 (694)
T 3cf6_E 355 FKVYCIDH----TYTTIRVPVAASVKEVISAVADKLG------SGEGLIIVKMNSGGEKVVLKSNDVSVFTTLT-----I 419 (694)
T ss_dssp EEEECTTS----CEEEEEEETTCBHHHHHHHHHHHHT------CCSCEEEEEECTTSCEEECCTTCBCCGGGSC-----T
T ss_pred EEEEccCC----ceeEEEeeccccHHHHHHHHHHHhC------CcccceEEEEeecCcccccCccccccccccc-----c
Confidence 37776664 3455899999999999999999997 2458999999999999999999887766553 3
Q ss_pred eeeeEeeecCCC
Q psy5451 175 EGRFLLRRIDEA 186 (197)
Q Consensus 175 EgrFvLk~~~~~ 186 (197)
.||+.++.++..
T Consensus 420 ~~r~~~~~~~~~ 431 (694)
T 3cf6_E 420 NGRLFACPREQF 431 (694)
T ss_dssp TCEEEEEEGGGG
T ss_pred ccceeccccccc
Confidence 489999888764
No 20
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=89.12 E-value=0.59 Score=40.44 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=47.6
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEcc-CCCccccCCCCCcee
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHE-NGDERKLGTDEKPLL 164 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~-nGe~RkL~~~E~PLl 164 (197)
+.++||-++.---..+.|.|.+.+|+.||+..+.++-.+ .....|||+..+. +|+.+-|.+++ ||-
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL----~~~~~FgL~~~~~~~~~~~wL~~~~-~l~ 75 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKV----KNVACYGLRLSHLQSEEVHWLHLDM-GVS 75 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTC----SCGGGEEEEEEETTSSCEEEECTTS-BHH
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCC----CeEeEEEEEEEEcCCCceEeeCCcc-chh
Confidence 345666444323457899999999999999999999875 2456899999885 56655565554 553
No 21
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=87.91 E-value=0.61 Score=39.83 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=41.3
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCC
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEK 161 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~ 161 (197)
.||.++...+||+.|++..+.||+.-.. .-+..+|+||-..+++.+.+--...+
T Consensus 13 ~~~~~~f~~~~~v~~~~~~i~e~~~~~~-~~~~~~y~l~~~~~~~~~~~Wl~~~~ 66 (371)
T 3ivf_A 13 VVKTMQFEPSTMVYDACRMIRERIPEAL-AGPPNDFGLFLSDDDPKKGIWLEAGK 66 (371)
T ss_dssp EEEEEEECTTCBHHHHHHHHHTTCGGGG-SSCGGGEEEEECCSSGGGCEECCTTS
T ss_pred eeEEEEECCCCCHHHHHHHHHHhccccc-CCCHHHCeEeccCCCCCcCEeccCCC
Confidence 5799999999999999999999997321 22456999999888776555333333
No 22
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=87.51 E-value=1.3 Score=36.20 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=46.8
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeee
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQ 166 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvq 166 (197)
+++++=|+ . .-+-|.|.+|..||++.+.++..... ..-|+||.+..+|+.+-|+. ++|+..|
T Consensus 4 ~~V~l~d~--~---~~~~v~~~tt~~el~~~v~~~l~L~e----~~~FgL~~~~~~~~~~wLd~-~~~l~~q 65 (294)
T 1ef1_A 4 VRVTTMDA--E---LEFAIQPNTTGKQLFDQVVKTIGLRE----VWFFGLQYQDTKGFSTWLKL-NKKVTAQ 65 (294)
T ss_dssp EEEEETTE--E---EEEEECTTCBHHHHHHHHHHHHTCCC----GGGEEEEEEBTTSCEEECCS-SSBGGGS
T ss_pred EEEEECCc--e---EEEEECCCCcHHHHHHHHHHHcCCCC----cceeEEEEECCCCceeeccc-ccCHHhh
Confidence 45555553 2 33889999999999999999988433 45899999999998776655 5577655
No 23
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=83.12 E-value=0.73 Score=38.78 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=42.0
Q ss_pred eeeeecCCceeeeeeEEecc--ccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeec
Q psy5451 96 RFYFQDSGQKVATKCIRVAS--DATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNW 169 (197)
Q Consensus 96 r~~~~d~g~k~aTKcIRVsS--t~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~w 169 (197)
++||=|+ ....|-|.+ .+|+.||++ +-. .+.-...-||||++.+++| +.|++.++|+-+.-.|
T Consensus 9 ~V~l~dg----~~~~~~i~~~~~tt~~el~e----~lg--L~~~~~~~FaL~~~~~~~e-~~L~~~~~~~d~~~~W 73 (322)
T 4dxa_B 9 RIYRMDG----SYRSVELKHGNNTTVQQIME----GMR--LSQETQQYFTIWICSENLS-LQLKPYHKPLQHVRDW 73 (322)
T ss_dssp EEECTTS----CEEEEECTTGGGCCHHHHHT----TSS--CCTTGGGGEEEEEECSSCE-EECCTTCCHHHHHHTH
T ss_pred EEEEECC----cEEEEEEcCCCCCcHHHHHH----HhC--cCccccCeeEEEEECCccc-cccCccccHHHHHHHH
Confidence 4444444 234567777 888899854 322 2111233699999998876 7899999998766666
No 24
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=82.47 E-value=2 Score=38.16 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=47.8
Q ss_pred eeeeEEeccccchHHHHHHHHh--hcCCCccCCCCCceeeEEEc-cCCCccccCCCCCceeeee-eccCC--CceeeeEe
Q psy5451 107 ATKCIRVASDATSQAVIETLIE--KFRPDMRMLSVPEYALYEIH-ENGDERKLGTDEKPLLVQL-NWHKD--DREGRFLL 180 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~Lle--KFrpdnRmLs~pefaLYevH-~nGe~RkL~~~E~PLlvqL-~wg~d--drEgrFvL 180 (197)
+.|-|++.+.+|+.|||.++.+ |..+.-+ ....|+|+..| .+|+.+-| +.+.||--++ .|... +.+-+|.|
T Consensus 38 ~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~--~~~~FgL~~~~~~~~~~~wL-~~~~~l~~v~~k~~~~~~~~~~~~~f 114 (392)
T 4eku_A 38 NFKLVKCTVQTEIREIITSILLSGRIGPNIR--LAECYGLRLKHMKSDEIHWL-HPQMTVGEVQDKYECLHVEAEWRYDL 114 (392)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHTTTTCSSCC--CGGGEEEEEEESSSCCEEEE-CTTSBHHHHHHHSTTTSCGGGEEEEE
T ss_pred CeEEEEeCCCCcHHHHHHHHHHHhhcCCCcC--ccceEEEEEEECCCCceEEC-CCCCcHHHHHhhhhhccCCCceEEEE
Confidence 6889999999999999999995 5443221 34589999987 45554444 4555776554 34322 23445666
Q ss_pred ee
Q psy5451 181 RR 182 (197)
Q Consensus 181 k~ 182 (197)
+-
T Consensus 115 Rv 116 (392)
T 4eku_A 115 QI 116 (392)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 25
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=81.67 E-value=4 Score=37.52 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=55.5
Q ss_pred ccchheeccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC-CccCCCCCceeeEEEccCCCccccCCCCCce
Q psy5451 85 SQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP-DMRMLSVPEYALYEIHENGDERKLGTDEKPL 163 (197)
Q Consensus 85 sqd~~lF~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp-dnRmLs~pefaLYevH~nGe~RkL~~~E~PL 163 (197)
+..|++-.=.++++|.+++-+...--++|+-+.|+.||++.|..|... ++ +..+.-||+++. |.-.+.-+.+.||
T Consensus 330 pl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~---~~~~lRl~ev~~-~ki~ki~~~~~~i 405 (530)
T 2ylm_A 330 KITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEK---ASGKLRLLEIVS-YKIIGVHQEDELL 405 (530)
T ss_dssp CHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTT---CCCCEEEEEEET-TEEEEEECTTSBG
T ss_pred CHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcC---CcccEEEEEEEC-CEEEEecCCCccc
Confidence 556666556888888888888889999999999999999999999873 34 355888999874 3333333333354
No 26
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=81.22 E-value=3.3 Score=37.35 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=50.3
Q ss_pred ccchhe--ecc---ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCC
Q psy5451 85 SQADLL--FHG---VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTD 159 (197)
Q Consensus 85 sqd~~l--F~G---vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~ 159 (197)
+..|+. .++ ..++++=|+. .+-+-|.+.+|+.||++.+.++..... +...|+||+.. .+..+-|.++
T Consensus 204 s~~Ei~a~~~~~~~~~~V~l~dg~----~~~~~v~~~tt~~el~~~v~~~lgL~e---~~~~FgL~~~~-~~~~~~L~~~ 275 (555)
T 3au4_A 204 SRDEIEALIHRQEMTSTVYCHGGG----SCKITINSHTTAGEVVEKLIRGLAMED---SRNMFALFEYN-GHVDKAIESR 275 (555)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTSC----EEEEEECTTCBHHHHHHHHHHHTTCTT---CCSEEEEEEES-SSCEEECCTT
T ss_pred CHHHHHHHHhCCCcceEEEecCCC----eEEEEeCCCCcHHHHHHHHHHHcCCCC---CCCceEEEEEe-CCeeEecCCC
Confidence 555555 122 3567776653 355889999999999999999988443 23589999875 3445778888
Q ss_pred CCce
Q psy5451 160 EKPL 163 (197)
Q Consensus 160 E~PL 163 (197)
++.+
T Consensus 276 ~~i~ 279 (555)
T 3au4_A 276 TVVA 279 (555)
T ss_dssp SBHH
T ss_pred Cchh
Confidence 7764
No 27
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.41 E-value=5.6 Score=36.99 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=46.8
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeee
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQ 166 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvq 166 (197)
++++|=| | . ..|-|.|.+|..+|++.+..+...- ...-|+||.+..+|+.+-|++ ++|+.-|
T Consensus 7 v~V~llD-g-t---~e~~vd~~tt~~ell~~V~~~LgL~----e~~~FGL~~~d~~~~~~WLd~-~k~i~~q 68 (575)
T 2i1j_A 7 VRVTTMD-A-E---LEFAIQQTTTGKQLFDQVVKTIGLR----EVWFFGLQYTDSKGDLTWIKL-YKKVMQQ 68 (575)
T ss_dssp EEEECSS-C-E---EEEEEETTCBHHHHHHHHHHHHTCC----CGGGEEEEEEBTTSCEEECCT-TSBGGGS
T ss_pred EEEEeCC-C-e---EEEEECCCCCHHHHHHHHHHHcCCC----CccceeEEEEecCcchhHhhc-cccHHHh
Confidence 4556655 3 2 3489999999999999999999843 345899999998888766655 5677655
No 28
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=77.95 E-value=0.9 Score=37.37 Aligned_cols=59 Identities=29% Similarity=0.348 Sum_probs=40.3
Q ss_pred EEEecccccccceeeEecccccccchhe-----eccceeeeeecCCceeeeee-EEeccccchHHHHHHHHhhcCCCccC
Q psy5451 63 FYFQDSGQKVATKCIRVASDATSQADLL-----FHGVMRFYFQDSGQKVATKC-IRVASDATSQAVIETLIEKFRPDMRM 136 (197)
Q Consensus 63 f~~qd~~~~~~tk~irvss~~~sqd~~l-----F~Gvmr~~~~d~g~k~aTKc-IRVsSt~TT~dVI~~LleKFrpdnRm 136 (197)
||.- +=++|||||||+.|++++|. |+- .|+-+|+|--. |+-+... -.|.
T Consensus 81 fflP----~gs~k~v~VsS~tTt~eVI~~LL~KFkV------~dnP~kFALye~vh~~gev---------------~~RK 135 (163)
T 3ddc_B 81 FYLP----LDAIKQMHISSTTTVSEVIQGLLDKFMV------VDNPQKFALFKRIHKDGQV---------------LFQK 135 (163)
T ss_dssp EEEE----EEEEEEEEEETTCCHHHHHHHHHHHTTC------CSCGGGEEEEEEEEETTEE---------------EEEE
T ss_pred EECC----CCceEEEEEccCCcHHHHHHHHHHHhcc------cCChhheEEEEEEccCCcE---------------EEEE
Confidence 6666 34899999999999998877 632 35667777655 5555320 0356
Q ss_pred CCCCceeeEE
Q psy5451 137 LSVPEYALYE 146 (197)
Q Consensus 137 Ls~pefaLYe 146 (197)
|+..+++|+.
T Consensus 136 L~d~E~PL~l 145 (163)
T 3ddc_B 136 LSIADYPLYL 145 (163)
T ss_dssp CCTTCCHHHH
T ss_pred CCCcCcCHhH
Confidence 7777777776
No 29
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.51 E-value=4 Score=33.79 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=44.2
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeee
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQ 166 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvq 166 (197)
.++++=|+ . ..+.|.+.+|..||++.+.++..... ..-|+||.+ .+|+.+-|..+ +||.-|
T Consensus 25 ~~V~lldg--~---~~~~v~~~t~~~el~~~v~~~l~L~e----~~~FgL~~~-~~~~~~wL~~~-~~i~~q 85 (314)
T 1h4r_A 25 VRIVTMDA--E---MEFNCEMKWKGKDLFDLVCRTLGLRE----TWFFGLQYT-IKDTVAWLKMD-KKVLDH 85 (314)
T ss_dssp EEEECSSC--E---EEEEEETTCBHHHHHHHHHHHHTCCC----GGGEEEEEE-ETTEEEECCTT-SBGGGS
T ss_pred EEEEeCCc--e---EEEEeCCCCcHHHHHHHHHHHhCCCC----CccceEEEE-eCCcCeeCCCc-cCHHHc
Confidence 35555553 2 33889999999999999999998433 468999999 67776656554 466544
No 30
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=76.51 E-value=3.9 Score=34.19 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=43.2
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeee
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL 167 (197)
+.+-+-|.+.+|..||++.+.++...- ...-|+|+.+..+|+.+-|+. ++|+.-|+
T Consensus 28 t~~~~~vd~~tt~~el~~~v~~~l~L~----e~~~FgL~~~~~~~~~~wLd~-~k~i~~q~ 83 (296)
T 3qij_A 28 TVYECVVEKHAKGQDLLKRVCEHLNLL----EEDYFGLAIWDNATSKTWLDS-AKEIKKQV 83 (296)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHTCS----SGGGEEEEEEEETTEEEECCT-TSBHHHHC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCC----CcceeEEEEEcCCCccchhcc-chhHHHhc
Confidence 356688999999999999999998833 345799999988887666655 45776554
No 31
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=73.31 E-value=4.8 Score=36.88 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=45.7
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEcc-CCCccccCCCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHE-NGDERKLGTDE 160 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~-nGe~RkL~~~E 160 (197)
.|+|.-++..--..|.|++...+|+++||..+.++..+ +...-|+|...|. +|+.+-|.++.
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i----~~~~~fgL~~~~~~~~~~~wl~~~~ 72 (656)
T 2j0j_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKV----KNVACYGLRLSHLQSEEVHWLHLDM 72 (656)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTC----SCGGGEEEEEEESSSCCEEEECTTS
T ss_pred eEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCc----ceeeeEEEEEeecccCceeeeCCCC
Confidence 34443333334568999999999999999999999874 3345799998887 78766666544
No 32
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=69.19 E-value=5.4 Score=33.97 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=41.9
Q ss_pred eeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEcc----CCCccccCCCCCceeeee
Q psy5451 96 RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHE----NGDERKLGTDEKPLLVQL 167 (197)
Q Consensus 96 r~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~----nGe~RkL~~~E~PLlvqL 167 (197)
++++=|+ .++-+.|.|.+|+.||++.+.++..... ...|+||.... ++..+-|. -++|+.-|.
T Consensus 89 ~V~l~dg----~~~~~~vd~~tt~~el~~~v~~~l~L~e----~~~FgL~~~~~~~~~~~~~~wL~-~~k~l~~q~ 155 (371)
T 3ivf_A 89 KIRMLDG----TVKTIMVDDSKTVTDMLMTICARIGITN----HDEYSLVRELMEEKKDDELNWLD-HGRTLREQG 155 (371)
T ss_dssp EEECTTS----CEEEEEEETTSBHHHHHHHHHHHTTCSC----GGGEEEECCC----------CCC-TTSBTGGGT
T ss_pred EEECcCC----CEEEEEECCCCCHHHHHHHHHHHcCCCC----ccccEEEEEecccccchHHHHHh-cCchhHhhC
Confidence 3444454 3567899999999999999999988433 45999999775 34444444 566776553
No 33
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=60.96 E-value=4.1 Score=32.48 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=24.4
Q ss_pred cceeEEEEEecccccccceeeEecccccccchhe
Q psy5451 57 FHGVMRFYFQDSGQKVATKCIRVASDATSQADLL 90 (197)
Q Consensus 57 f~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~l 90 (197)
...++++|+.|. .+|+|.|+++.|..+.|.
T Consensus 33 ~k~~v~v~~~d~----~~k~i~v~~~~ta~ev~~ 62 (291)
T 3tca_A 33 KKLVVKVHMDDS----STKSLMVDERQLARDVLD 62 (291)
T ss_dssp CEEEEEEECTTS----CEEEEEEETTCBHHHHHH
T ss_pred cceEEEEEcCCC----ceEEEEeCCCCcHHHHHH
Confidence 357899999986 589999999998665554
No 34
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=60.90 E-value=14 Score=27.69 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=36.3
Q ss_pred ecccccccchheeccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCc
Q psy5451 79 VASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDM 134 (197)
Q Consensus 79 vss~~~sqd~~lF~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdn 134 (197)
+++.+..++++ .|+++++|..+.-.+-+|.|...+|..++.+.+.+|+.+..
T Consensus 13 ~~~~~~~~~~i----~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp 64 (105)
T 4dbg_A 13 LKPEVSPTQDI----RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPP 64 (105)
T ss_dssp -------CCCE----EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ecCCcCCCCcE----EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCH
Confidence 34444444444 36788888876558889999999999999999999998433
No 35
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=55.17 E-value=24 Score=22.94 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=29.4
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
.|+++.+...++ +.+|.|++++|+.++...+.++..+
T Consensus 3 ~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~i 39 (85)
T 3mtn_B 3 HMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGI 39 (85)
T ss_dssp CEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred eEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHHCc
Confidence 467777775543 3468999999999999999999873
No 36
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=53.91 E-value=36 Score=24.95 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=39.6
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCcccc
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKL 156 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL 156 (197)
++.+|+++ ..++||.+..+-++..+-+.+-|+.. ....|.|+=+.+.|+.--+
T Consensus 9 vK~~~~gd-----i~~~~v~~~i~~~~L~~kv~~~~~~~----~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 9 VKAYYRGD-----IMITHFEPSISFEGLCNEVRDMCSFD----NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEESSSC-----EEEEEECTTCCHHHHHHHHHHHTTCC----SSCCEEEEECCSSSCCEEC
T ss_pred EEEEeCCe-----EEEEECCCCCCHHHHHHHHHHHhCCC----CCCeEEEEEECCCCCcccc
Confidence 34566654 55789999999999999999998832 3457888888888874333
No 37
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=53.90 E-value=41 Score=24.23 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=27.0
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
++++..-+..+-.+-.+||..++|..+|.+.|-+|+-
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G 51 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG 51 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC
Confidence 3444444444334456899999999999999999998
No 38
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=53.78 E-value=27 Score=22.98 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=29.8
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+...++. -.|.|+.++|+.++...+.++..
T Consensus 11 ~~m~i~vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~g 47 (88)
T 3dbh_I 11 GSMLIKVKTLTGKE--IEIDIEPTDKVERIKERVEEKEG 47 (88)
T ss_dssp CCEEEEEECTTSCE--EEEEECTTCBHHHHHHHHHHHHC
T ss_pred CcEEEEEEcCCCCE--EEEEECCCCCHHHHHHHHHHHHC
Confidence 45888888754433 36899999999999999999987
No 39
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=51.86 E-value=26 Score=33.09 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=60.0
Q ss_pred ccceeEEEEEecccccccceeeEe-cc--------cccccchhe-----eccceeeeeecCCceeeeeeEEeccccchHH
Q psy5451 56 LFHGVMRFYFQDSGQKVATKCIRV-AS--------DATSQADLL-----FHGVMRFYFQDSGQKVATKCIRVASDATSQA 121 (197)
Q Consensus 56 ~f~Gvmrf~~qd~~~~~~tk~irv-ss--------~~~sqd~~l-----F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~d 121 (197)
.|..+++.|+++..+++|.-|.+- -- -..|..|+. -.-..+++|=|+ ..+-+-|.|.+|..|
T Consensus 213 ~~~~yl~~~l~~~~~~~a~~c~~~L~rt~~~g~R~~~Ps~~Ei~Ai~~~~~i~~~V~llDg----t~~~~~vds~Tt~~e 288 (655)
T 3pvl_A 213 KFVKYLRNFIHGGPPGYAPYCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDG----TTKTLLTDSATTARE 288 (655)
T ss_dssp TTHHHHHHHHHTSCTTTHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHTCCEEEEEEETTS----CEEEEEECTTCBHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhhcCCCCCcCCCHHHHHHHHcCCceEEEEEecCC----ceEEEEEccCCcHHH
Confidence 366777788887767888888632 11 112444544 112355666666 456788999999999
Q ss_pred HHHHHHhhcCCCccCCCCCceeeEEEccCC
Q psy5451 122 VIETLIEKFRPDMRMLSVPEYALYEIHENG 151 (197)
Q Consensus 122 VI~~LleKFrpdnRmLs~pefaLYevH~nG 151 (197)
|++.+.++...-. ...|+||.+..++
T Consensus 289 ll~~V~~~LgL~e----~~~FgL~~~~~dk 314 (655)
T 3pvl_A 289 LCNALADKISLKD----RFGFSLYIALFDK 314 (655)
T ss_dssp HHHHHHHHTTCSS----CTTEEEEEEETTE
T ss_pred HHHHHHHHcCCcc----cccceeEEecCCc
Confidence 9999999988433 4699999975543
No 40
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=51.19 E-value=25 Score=22.21 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.9
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+..+++ +..|.|+.++|..++...+.++..
T Consensus 1 M~i~vk~~~g~--~~~i~v~~~~tv~~lK~~i~~~~~ 35 (76)
T 3a9j_A 1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEG 35 (76)
T ss_dssp CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHC
T ss_pred CEEEEEcCCCC--EEEEEECCCCcHHHHHHHHHHHHC
Confidence 56666664333 336889999999999999999886
No 41
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=48.63 E-value=26 Score=22.83 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=28.2
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
-|+++.+...++. ..|.|++++|+.++.+.+.++..
T Consensus 3 ~m~i~vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~ 38 (85)
T 3n3k_B 3 HMRIVVKTLMGRT--IILEVEPSDTIENVKAKIQDKEG 38 (85)
T ss_dssp -CEEEEECGGGCE--EEEECCTTCBHHHHHHHHHHHHC
T ss_pred eEEEEEEeCCCCE--EEEEECCCCcHHHHHHHHHHHHC
Confidence 3677777654432 46899999999999999999987
No 42
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=48.61 E-value=37 Score=23.72 Aligned_cols=38 Identities=5% Similarity=-0.048 Sum_probs=31.3
Q ss_pred eccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 91 F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|.+.|.++.+..++ +-.|.|+.++|+.++...|.++..
T Consensus 12 ~~~~~~I~Vk~~~~---~~~l~v~~~~TV~~LK~~I~~~~g 49 (94)
T 2kan_A 12 AVRKIHVTVKFPSK---QFTVEVDRTETVSSLKDKIHIVEN 49 (94)
T ss_dssp SSCCEEEEEECSSC---EEEEEECTTCBHHHHHHHHHHHSS
T ss_pred CCCCEEEEEEcCCc---EEEEEECCCCcHHHHHHHHHHHHC
Confidence 45667888887765 457899999999999999999876
No 43
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=47.90 E-value=33 Score=21.62 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=27.0
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+..+++ +-.+.|+.++|..++...+.++..
T Consensus 1 M~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~~ 35 (76)
T 1ndd_A 1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEG 35 (76)
T ss_dssp CEEEEECTTSC--EEEEECCTTCBHHHHHHHHHHHHC
T ss_pred CEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHHC
Confidence 56677764333 236889999999999999999876
No 44
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=47.57 E-value=37 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=29.7
Q ss_pred ccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 92 ~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
.+.|+++.+..+++. -.|.|+.++|+.++...+.++..+
T Consensus 15 ~~~m~i~Vk~~~g~~--~~l~v~~~~TV~~LK~~I~~~~gi 53 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTH--ITLEVEPSDTIENVKAKIQDKEGI 53 (91)
T ss_dssp CCSEEEEEECTTSCE--EEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CCeEEEEEEeCCCCE--EEEEECCCCCHHHHHHHHHhhhCC
Confidence 345777777654433 358999999999999999999873
No 45
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=47.36 E-value=39 Score=21.99 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=29.5
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+-|.++.+..+++. -.|.|++++|+.++...+.++..
T Consensus 3 ~~m~i~Vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~g 39 (79)
T 3phx_B 3 EPLSILVRNNKGRS--STYEVRLTQTVAHLKQQVSGLEG 39 (79)
T ss_dssp CCEEEEEECTTSCE--EEEEECTTSBHHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCE--EEEEECCcChHHHHHHHHHhhcC
Confidence 45778888755543 35899999999999999998877
No 46
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=44.75 E-value=38 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=28.5
Q ss_pred ccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhc
Q psy5451 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKF 130 (197)
Q Consensus 92 ~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKF 130 (197)
.+.|+++.+..+++. -.|.|+.++|+.++.+.+.+++
T Consensus 3 ~~~m~i~vk~~~g~~--~~~~v~~~~TV~~lK~~i~~~~ 39 (85)
T 2wyq_A 3 PMAVTITLKTLQQQT--FKIRMEPDETVKVLKEKIEAEK 39 (85)
T ss_dssp -CCEEEEEEETTSCE--EEEEECTTSBHHHHHHHHHHHH
T ss_pred CceEEEEEEECCCCE--EEEEECCCCCHHHHHHHHHhhc
Confidence 456888888764432 2589999999999999999985
No 47
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.29 E-value=49 Score=21.29 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=27.8
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
.|+++.+..+++ +..|.|+.++|+.++.+.+.++..
T Consensus 7 ~m~i~vk~~~g~--~~~~~v~~~~tV~~LK~~i~~~~~ 42 (81)
T 2dzi_A 7 GMQLTVKALQGR--ECSLQVPEDELVSTLKQLVSEKLN 42 (81)
T ss_dssp SEEEEEEETTSC--EEEEEECSSCBHHHHHHHHHHHTC
T ss_pred cEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHC
Confidence 477777754333 335899999999999999999886
No 48
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.84 E-value=57 Score=22.60 Aligned_cols=48 Identities=25% Similarity=0.203 Sum_probs=32.7
Q ss_pred EEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEcc-CCC-ccccCCCCCce
Q psy5451 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHE-NGD-ERKLGTDEKPL 163 (197)
Q Consensus 111 IRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~-nGe-~RkL~~~E~PL 163 (197)
+|++.++|..++...|..+|.. .+....|+.... ++. ...|.++..||
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gi-----p~~~q~L~~~~~~~~~~~~~L~~d~~~L 76 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKV-----PVSELLLSYESSKMPGREIELENDLQPL 76 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTC-----CTTTCEEEEECTTSCSCEEECCCSSSBS
T ss_pred EECCCCCCHHHHHHHHHHHHCC-----ChhHeEEEEEcCCCCceeeccCCCcccH
Confidence 6788999999999999999972 223555665432 232 23377777776
No 49
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.76 E-value=56 Score=21.53 Aligned_cols=37 Identities=0% Similarity=0.098 Sum_probs=28.8
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+...++ +-.|.|+.++|+.++.+.+.++..
T Consensus 6 ~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~g 42 (87)
T 1wh3_A 6 SGIQVFVKNPDGG--SYAYAINPNSFILGLKQQIEDQQG 42 (87)
T ss_dssp SSEEEEEEETTTE--EEEEEECSSSBHHHHHHHHHHHTC
T ss_pred CCEEEEEEcCCCC--EEEEEeCCCChHHHHHHHHHHHhC
Confidence 4577777765443 336899999999999999999876
No 50
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=41.32 E-value=39 Score=22.83 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=28.0
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
|+++.+...++. -.|.|+.++|+.++...+.+++.+
T Consensus 2 m~i~vk~~~g~~--~~~~v~~~~TV~~LK~~i~~~~gi 37 (96)
T 3k9o_B 2 MQIFVKTLTGKT--ITLEVEPSDTIENVKAKIQDKEGI 37 (96)
T ss_dssp CEEEEEETTCCE--EEEECCTTCBHHHHHHHHHHHHCC
T ss_pred cEEEEEeCCCCE--EEEEECCCCCHHHHHHHHHhhhCC
Confidence 667777654432 358999999999999999999873
No 51
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.29 E-value=47 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=30.3
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+..++++ .|.|..+.|+.++.+.|.++..
T Consensus 16 ~~m~I~Vk~~~g~~---~l~v~~~~TV~~LK~~I~~~~g 51 (106)
T 1wx7_A 16 HLIKVTVKTPKDKE---DFSVTDTCTIQQLKEEISQRFK 51 (106)
T ss_dssp SEEEEEEECSSCEE---EEEEETTCCHHHHHHHHHHHHT
T ss_pred ceEEEEEEeCCCcE---EEEECCCCcHHHHHHHHHHHHC
Confidence 45788888777663 7999999999999999999886
No 52
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=39.85 E-value=48 Score=22.67 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=30.3
Q ss_pred ccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 92 ~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.-|+++.+.-.++.. .|.|+.++|+.++...|.++..
T Consensus 8 ~~~~~i~vk~l~g~~~--~l~v~~~~TV~~LK~~I~~~~g 45 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSF--ELEVDYRDTLLVVKQKIERSQH 45 (84)
T ss_dssp CCCEEEEEEETTSCEE--EEEECTTSBHHHHHHHHHHHHT
T ss_pred cCceEEEEEecCCcEE--EEEECCCChHHHHHHHHHHHHC
Confidence 4567788877666443 4899999999999999999976
No 53
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=39.63 E-value=43 Score=22.75 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=26.8
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+...++. -.|.|++++|+.++...+.++..
T Consensus 1 M~I~Vk~~~g~~--~~l~v~~~~TV~~LK~~I~~~~g 35 (88)
T 4fbj_B 1 MLIKVKTLTGKE--IEIDIEPTDKVERIKERVEEKEG 35 (88)
T ss_dssp CEEEEEETTCCE--EEEECCTTCBHHHHHHHHHHHHC
T ss_pred CEEEEEcCCCCE--EEEEECCCCCHHHHHHHHHHHHC
Confidence 566666543332 36899999999999999999887
No 54
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=39.60 E-value=1e+02 Score=21.93 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=27.1
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.++.+.++.+-.+-.++|+.++|+.+|.+.|-++..
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G 52 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG 52 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC
Confidence 3344444444334556899999999999999999987
No 55
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=39.46 E-value=57 Score=20.75 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=27.1
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+..|+ +..|.|+.+.|+.++...+.++..
T Consensus 5 m~i~vk~~g~---~~~~~v~~~~tV~~LK~~i~~~~~ 38 (77)
T 2bwf_A 5 LNIHIKSGQD---KWEVNVAPESTVLQFKEAINKANG 38 (77)
T ss_dssp EEEEEEETTE---EEEEEECTTCBHHHHHHHHHHHHC
T ss_pred EEEEEEECCE---EEEEEECCCCcHHHHHHHHHHHhC
Confidence 6677777443 346899999999999999999886
No 56
>2bt9_A Lectin; sugar recognition, beta-propeller; HET: MFU; 0.94A {Ralstonia solanacearum} PDB: 2bs5_A* 2bs6_A* 3zw0_A* 3zw1_B* 3zw2_A* 3zwe_A* 3zzv_A* 3zw0_B* 3zw1_A*
Probab=38.90 E-value=29 Score=25.79 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=33.0
Q ss_pred eEEEEEecccccccceeeEecc---------cccccchheecc----ceeeeeecCCceeeeeeE
Q psy5451 60 VMRFYFQDSGQKVATKCIRVAS---------DATSQADLLFHG----VMRFYFQDSGQKVATKCI 111 (197)
Q Consensus 60 vmrf~~qd~~~~~~tk~irvss---------~~~sqd~~lF~G----vmr~~~~d~g~k~aTKcI 111 (197)
-||+|| +...+...+|-= ++ ..|+-+-+-+.| .+|+|| +.+..+.-+|-
T Consensus 15 ~IRVYy-~~~~~i~E~~~d-g~~W~~g~~a~P~t~IAA~sw~g~~~~~IRVY~-~~~n~i~E~~w 76 (90)
T 2bt9_A 15 SIRVYT-ANNGKITERCWD-GKGWYTGAFNEPGDNVSVTSWLVGSAIHIRVYA-STGTTTTEWCW 76 (90)
T ss_dssp EEEEEE-EETTEEEEEEES-SSCEEEEEEEEECSEEEEEEEEETTEEEEEEEE-EETTEEEEEEE
T ss_pred eEEEEE-cCCCcEEEEEEc-CCccccCcccCCCCcEEEEEccCCCcEEEEEEE-CCCCcEEEEEE
Confidence 589999 777888888864 22 112334444666 699999 77777766663
No 57
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=38.73 E-value=53 Score=21.18 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=28.1
Q ss_pred cceeeeeecCCceeeeeeEE-eccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIR-VASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIR-VsSt~TT~dVI~~LleKFr 131 (197)
|.|+++.+...++.- ..|. |+.+.|..++...+-++..
T Consensus 1 g~m~i~Vk~~~g~~~-~~l~~v~~~~tv~~lK~~i~~~~g 39 (78)
T 2faz_A 1 GSMWIQVRTMDGRQT-HTVDSLSRLTKVEELRRKIQELFH 39 (78)
T ss_dssp -CEEEEEEETTSSCE-EEEEEECTTCBHHHHHHHHHHHHC
T ss_pred CcEEEEEEECCCCEE-EEEeccCCCCCHHHHHHHHHHHHC
Confidence 567888876543321 2578 9999999999999998876
No 58
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=38.52 E-value=54 Score=21.88 Aligned_cols=36 Identities=6% Similarity=0.131 Sum_probs=28.4
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
.|+++.+...++. .+|.|..++|+.++...+.++..
T Consensus 5 ~m~i~Vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~g 40 (90)
T 4dwf_A 5 SLEVLVKTLDSQT--RTFIVGAQMNVKEFKEHIAASVS 40 (90)
T ss_dssp EEEEEEEETTCCE--EEEEEETTCBHHHHHHHHHHHHT
T ss_pred EEEEEEEcCCCCE--EEEEECCCCCHHHHHHHHHHHhC
Confidence 4677777754433 35899999999999999999987
No 59
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=38.51 E-value=58 Score=21.64 Aligned_cols=39 Identities=5% Similarity=0.079 Sum_probs=30.6
Q ss_pred eccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 91 F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
..+.|+++.+..+++. ..|.|..+.|+.++...+.+++.
T Consensus 14 ~~~~m~i~Vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~g 52 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQT--RTFIVGAQMNVKEFKEHIAASVS 52 (88)
T ss_dssp -CCEEEEEEEETTSCE--EEEEEETTCBHHHHHHHHHHHHT
T ss_pred CCCeEEEEEEcCCCCE--EEEEECCCCCHHHHHHHHHHHhC
Confidence 3456888888864443 35899999999999999999987
No 60
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1
Probab=37.52 E-value=42 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCCCccCCCCCceeeEEEccC
Q psy5451 121 AVIETLIEKFRPDMRMLSVPEYALYEIHEN 150 (197)
Q Consensus 121 dVI~~LleKFrpdnRmLs~pefaLYevH~n 150 (197)
+....++++|-|+.. ..|++++|.+...
T Consensus 103 ~~~~~~~~~~~~~~~--~~~~~~v~~i~~~ 130 (148)
T 2i02_A 103 ELWKPELQTWFPKGL--DEPDIALLKVNIN 130 (148)
T ss_dssp HHCCGGGGGTCTTGG--GCTTEEEEEEEEE
T ss_pred HHHhHHHHHHccCCC--CCCCEEEEEEEeC
Confidence 344455677766542 4578899987754
No 61
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=37.09 E-value=60 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=29.3
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+..++++ .|.|+.+.|+.++.+.|.++..
T Consensus 21 ~~m~I~Vk~~~g~~---~l~v~~~~TV~~LK~~I~~~~g 56 (100)
T 1yqb_A 21 HLIKVTVKTPKDKE---DFSVTDTCTIQQLKEEISQRFK 56 (100)
T ss_dssp TEEEEEEECSSCEE---EEEEETTCBHHHHHHHHHHHHT
T ss_pred CeEEEEEEcCCCcE---EEEECCCCcHHHHHHHHHHHHC
Confidence 44677777776663 7899999999999999999876
No 62
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=36.87 E-value=54 Score=22.46 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.9
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+..+++ +..|.|+.++|+.++...+.++..
T Consensus 1 M~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~g 35 (98)
T 1yx5_B 1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEG 35 (98)
T ss_dssp CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHTC
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHC
Confidence 56666664333 336899999999999999999876
No 63
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=35.63 E-value=80 Score=23.99 Aligned_cols=54 Identities=9% Similarity=0.234 Sum_probs=38.5
Q ss_pred eEEeccccchHHHHHHHHhh---cCCCccCCCCCceeeEEEccCCCccccCCCCCce
Q psy5451 110 CIRVASDATSQAVIETLIEK---FRPDMRMLSVPEYALYEIHENGDERKLGTDEKPL 163 (197)
Q Consensus 110 cIRVsSt~TT~dVI~~LleK---FrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PL 163 (197)
.++|++++|-.++.+.|.+- +..-....+++.|..+.|..+||.--|-|..+.|
T Consensus 33 ~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL 89 (108)
T 2v1y_A 33 TLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRL 89 (108)
T ss_dssp EEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBG
T ss_pred EEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEE
Confidence 45899999999998877664 4433334455599999999999866666555544
No 64
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.14 E-value=64 Score=21.96 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=30.2
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhc
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKF 130 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKF 130 (197)
.|.++.+..+++..+-.|-|..++|+.++.+.|.++.
T Consensus 7 ~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~ 43 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVY 43 (93)
T ss_dssp CCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHh
Confidence 4777778777776566677779999999999999987
No 65
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=34.31 E-value=79 Score=21.32 Aligned_cols=37 Identities=5% Similarity=0.018 Sum_probs=28.3
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+...++ +-.|.|+.+.|+.++...+.++..
T Consensus 3 ~~m~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~g 39 (88)
T 2hj8_A 3 EPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEG 39 (88)
T ss_dssp CEEEEEEEETTSC--EEEEEEESSSBHHHHHHHHHHHTC
T ss_pred ccEEEEEECCCCC--EEEEEECCCCcHHHHHHHHHHHhC
Confidence 4577777765333 236899999999999999998876
No 66
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.85 E-value=1.1e+02 Score=20.76 Aligned_cols=36 Identities=6% Similarity=0.089 Sum_probs=30.1
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
..|+++.+..|+.+ .|.|..++|+.++.+.|.++..
T Consensus 16 ~~m~i~Vk~~g~~~---~~~v~~~~TV~~LK~~I~~~~g 51 (96)
T 1wx8_A 16 RIIRVSVKTPQDCH---EFFLAENSNVRRFKKQISKYLH 51 (96)
T ss_dssp CEEEEEEECSSSEE---EEEEETTCCHHHHHHHHHHHTC
T ss_pred CcEEEEEEECCeEE---EEEECCCCCHHHHHHHHHHHhC
Confidence 56888888875544 6899999999999999999887
No 67
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=33.73 E-value=1.3e+02 Score=23.00 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=35.2
Q ss_pred eeeeecCC-ceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE
Q psy5451 96 RFYFQDSG-QKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE 146 (197)
Q Consensus 96 r~~~~d~g-~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe 146 (197)
+++--|.+ .+-..+.+||+++.-.--|+-.|+||..+.. +=..||||=
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~---dWSDhaLWW 69 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQ---DWSDYALWW 69 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSS---CCSSEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhccccc---chHHhhhhh
Confidence 34444433 3357799999999999999999999986443 455888874
No 68
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=32.57 E-value=42 Score=22.76 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=26.4
Q ss_pred eeeeeecCCceeeeeeEE-eccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIR-VASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIR-VsSt~TT~dVI~~LleKFr 131 (197)
|++.+|-.+++.. |. |++++|+.+|...+.++..
T Consensus 1 m~i~vr~~~G~~~---v~~l~~~~Tv~~Lk~~I~~~~g 35 (86)
T 2kzr_A 1 WRVRCKAKGGTHL---LQGLSSRTRLRELQGQIAAITG 35 (86)
T ss_dssp CCEEEEETTEEEE---ECSCCTTCBHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCEE---eeecCCCCCHHHHHHHHHHHhC
Confidence 5566666666542 66 8899999999999999976
No 69
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=31.76 E-value=36 Score=24.19 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=25.1
Q ss_pred eeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 97 FYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 97 ~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
++.+.+|+.+ .|.|+++.|+.++.+.|.++..+
T Consensus 31 I~Vk~~g~~~---~l~v~~~~TV~~LK~~I~~~~gi 63 (101)
T 3m63_B 31 IHIKSGQDKW---EVNVAPESTVLQFKEAINKANGI 63 (101)
T ss_dssp EEEECSSCCC---CBCCCTTSBHHHHHHHHHHHHSC
T ss_pred EEEEECCEEE---EEEeCCCCCHHHHHHHHHHHHCc
Confidence 3455544444 47899999999999999999873
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=30.53 E-value=1.5e+02 Score=21.72 Aligned_cols=35 Identities=6% Similarity=0.034 Sum_probs=27.5
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+.-+++. -.|.|+++.|+.+|...+-++..
T Consensus 3 m~i~vk~~~g~~--~~l~v~~~~tV~~lK~~I~~~~g 37 (159)
T 3rt3_B 3 WDLTVKMLAGNE--FQVSLSSSMSVSELKAQITQKIG 37 (159)
T ss_dssp CEEEEEETTSCE--EEEECCTTCCHHHHHHHHHHHHC
T ss_pred eEEEEEECCCCE--EEEEeCCCCcHHHHHHHHHHHhC
Confidence 666777544442 35899999999999999999987
No 71
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=30.01 E-value=1.1e+02 Score=21.63 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=31.8
Q ss_pred hheecc----ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 88 DLLFHG----VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 88 ~~lF~G----vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+...+| .|+++.+...++ +..|.|+.++|+.++...+.++..
T Consensus 25 ~~~~~g~~~~~m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~g 70 (111)
T 2ojr_A 25 DGWIEGDELLAMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEG 70 (111)
T ss_dssp SSSCCGGGSSCEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHC
T ss_pred cccccCCCCCeEEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHHHHC
Confidence 344555 488888875443 236899999999999999999886
No 72
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=29.56 E-value=2.1e+02 Score=23.22 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=38.1
Q ss_pred eEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCce
Q psy5451 110 CIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPL 163 (197)
Q Consensus 110 cIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PL 163 (197)
.+++|...|..++.+.+.+.|.++. ..+.-||..+.++.-..|.+.+..|
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~----~~~~RLW~~~~~~~~~~L~~~~~tl 204 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPA----ERETRLWNKYMSNTYEQLSKLDNTI 204 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCT----TSCEEEEECSSSSSCEECCCTTSBT
T ss_pred EEEecccCcHHHHHHHHHHHhCCCC----CCeEEEEEecCCCCHhhhcCCCCCH
Confidence 4788999999999999999999544 2378999988766555666554443
No 73
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=29.19 E-value=25 Score=26.13 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=18.8
Q ss_pred eeEEeccccchHHHHHHHHhhc
Q psy5451 109 KCIRVASDATSQAVIETLIEKF 130 (197)
Q Consensus 109 KcIRVsSt~TT~dVI~~LleKF 130 (197)
+-|.|+.+.|-+|+|+.|.++-
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p 28 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSA 28 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCT
T ss_pred EEEEECCchhHHHHHHHHHhCh
Confidence 4578899999999999999943
No 74
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=29.15 E-value=88 Score=22.44 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=30.3
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhc
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKF 130 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKF 130 (197)
+.|.++.+..+++.-+-.|.|..++|+.++.+.|.+++
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~ 59 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVY 59 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHS
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHh
Confidence 55778888776665445788899999999999999987
No 75
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=28.58 E-value=83 Score=21.28 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=27.3
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+..+++. -.|.|+.++|+.++.+.+.++..
T Consensus 10 ~~i~v~~~~G~~--~~l~v~~~~TV~~LK~~I~~~~g 44 (88)
T 1sif_A 10 LQLFIKTLTGKT--FTVEMEPSDTIENLKAKIQDKEG 44 (88)
T ss_dssp CEEEEEETTSCE--EEEECCTTSBHHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCE--EEEEECCCChHHHHHHHHHHHHC
Confidence 566666655533 45889999999999999999987
No 76
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=28.39 E-value=32 Score=25.76 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.8
Q ss_pred eeEEEEEecccccccceeeEecccccccchhe
Q psy5451 59 GVMRFYFQDSGQKVATKCIRVASDATSQADLL 90 (197)
Q Consensus 59 Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~l 90 (197)
=|++||+.|. .+|-|=|.++.|..+.|-
T Consensus 10 ~vvkvf~~Dg----ssksi~V~~~~Ta~dv~~ 37 (100)
T 1wgr_A 10 HVVKVYSEDG----ACRSVEVAAGATARHVCE 37 (100)
T ss_dssp EEEEEEETTS----CEEEEEECTTCCHHHHHH
T ss_pred EEEEEEecCC----CEEEEEECCCCcHHHHHH
Confidence 3899999987 578999999999877765
No 77
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=28.16 E-value=87 Score=21.52 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=27.5
Q ss_pred eccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 91 F~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
..+.|+++.+. |+. -.|.|+.++|+.++.+.+.++..
T Consensus 16 ~~~~m~I~Vk~-g~~---~~l~v~~~~TV~~LK~~I~~~~g 52 (93)
T 2l7r_A 16 PRGSMQLFVRA-QEL---HTFEVTGQETVAQIKAHVASLEG 52 (93)
T ss_dssp ----CEEEEES-SSE---EEEECCSSCBHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEC-CCE---EEEEeCCCCcHHHHHHHHHHHhC
Confidence 34557888887 543 36899999999999999999876
No 78
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=28.02 E-value=85 Score=21.65 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.9
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
.|+++.+...++. -.|.|..++|+.++...|.+++.
T Consensus 22 ~m~I~Vk~~~g~~--~~l~v~~~~TV~~LK~~I~~~~g 57 (98)
T 4hcn_B 22 PMQIFVKTLTGKT--ITLEVESSDTIDNVKSKIQDKEG 57 (98)
T ss_dssp CCEEEEEETTCCE--EEEECCTTCBHHHHHHHHHHHHC
T ss_pred eEEEEEEeCCCCE--EEEEECCCCcHHHHHHHHHHHhC
Confidence 4788888644432 36899999999999999999987
No 79
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=28.01 E-value=1e+02 Score=21.94 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=28.9
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
.|+++.+...++. -.|+|++++|+.++...|.+++.
T Consensus 35 ~m~I~Vk~~~G~~--~~l~v~~~~TV~~LK~~I~~~~g 70 (111)
T 3vdz_A 35 AMQIFVKTLTGKT--ITLEVEPSDTIENVKAKIQDKEG 70 (111)
T ss_dssp CEEEEEECSSSCE--EEEEECTTCBHHHHHHHHHHHHC
T ss_pred cEEEEEEeCCCCE--EEEEeCCCCCHHHHHHHHHHHhC
Confidence 4788888654433 35899999999999999999987
No 80
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=27.71 E-value=2.1e+02 Score=22.92 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=36.2
Q ss_pred eeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCC
Q psy5451 109 KCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDE 160 (197)
Q Consensus 109 KcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E 160 (197)
-.+++|...|..++.+.+.+.|.++. ..++-||.++.++....|.+.+
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~----~~~~RlW~~~~~~~~~~L~~~~ 189 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPD----EKETRLWNKYMSNTFEPLNKPD 189 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCT----TSCEEEEEEEETTEEEECCCTT
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCC----CCceEEEEecCCCCeeecCCCC
Confidence 45788999999999999999999544 1368999988666545555444
No 81
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=27.60 E-value=1.1e+02 Score=22.83 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=39.5
Q ss_pred eeeeeecCCce---eeeeeEEeccccchHHHHHHHHhhcCCC-ccCCCCCceeeEEEccCCCccccCCC
Q psy5451 95 MRFYFQDSGQK---VATKCIRVASDATSQAVIETLIEKFRPD-MRMLSVPEYALYEIHENGDERKLGTD 159 (197)
Q Consensus 95 mr~~~~d~g~k---~aTKcIRVsSt~TT~dVI~~LleKFrpd-nRmLs~pefaLYevH~nGe~RkL~~~ 159 (197)
+|++|.++... =-+.-|+|++..+-++++..+-+||+.- +.-. ...+.|---.++|+.--|.++
T Consensus 8 VKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i-~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 8 FRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNI-SPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp EEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCC-CCCCCEEEECSSSCEEEECSH
T ss_pred EEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccc-cceeEEEEEcCCCCEEEEcCH
Confidence 35666643200 0356799999999999999999999931 1101 133455555666665544443
No 82
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=27.36 E-value=41 Score=27.77 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=56.8
Q ss_pred eeEEEEEecccccccceeeEeccccc---ccchheeccceeeeeecCCc---eeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 59 GVMRFYFQDSGQKVATKCIRVASDAT---SQADLLFHGVMRFYFQDSGQ---KVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 59 Gvmrf~~qd~~~~~~tk~irvss~~~---sqd~~lF~Gvmr~~~~d~g~---k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
|-.++|.-=-++.-..|+||+.++.. +.|+=-|.|-|+-.++..+. +-.+-.|.|.. ++-.++ ++++.
T Consensus 49 ~dv~vyl~l~~~p~p~~ti~f~g~~v~~v~PdeR~~~gli~kaL~~~~~~~~~~~~pgi~v~~-~sle~l----l~e~~- 122 (197)
T 2qmm_A 49 RDVEVYLLLLGPPSPPKSILIKGDEVRRMSPDERNVAGHIKKALAVECGKSWKKVHSGVYVSR-KGLEEL----IEELS- 122 (197)
T ss_dssp TTEEEEEEECCSSSCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHSCCCSSCEEEETTEEEEC-CCHHHH----HHHHH-
T ss_pred CCeEEEEEECCCCCCCeeEEecCCeEEEcChhHHHHHHHHHHHHHhccCcccCCCCCCEEEEC-CCHHHH----HHHhh-
Confidence 44567766333445568888888774 44555788888877765222 23346777766 454544 44432
Q ss_pred CccCCCCCceeeEEEccCCCccccCC-CCCceee
Q psy5451 133 DMRMLSVPEYALYEIHENGDERKLGT-DEKPLLV 165 (197)
Q Consensus 133 dnRmLs~pefaLYevH~nGe~RkL~~-~E~PLlv 165 (197)
.++.+|..|++|+.-+... .+.|+++
T Consensus 123 -------~~~~v~~L~E~G~~i~~~~~~~~~~fv 149 (197)
T 2qmm_A 123 -------EKYSIIYLKEDGVDISNAQLPPNPLFV 149 (197)
T ss_dssp -------HHSEEEEEEEEEEEGGGSCCCSSEEEE
T ss_pred -------cCCcEEEEcCCCCCCchhhcCCCCEEE
Confidence 1345999999998554443 3355544
No 83
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=27.19 E-value=92 Score=22.89 Aligned_cols=40 Identities=15% Similarity=0.451 Sum_probs=28.8
Q ss_pred HHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCc
Q psy5451 123 IETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDR 174 (197)
Q Consensus 123 I~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddr 174 (197)
++-|++++ |++ .|.|+||-+..+| ...+=++=+.|.|++-
T Consensus 52 ~~el~~~l-~~~----~~rY~~~~~~~~~-------~~~~k~vfI~w~Pd~~ 91 (141)
T 1hqz_1 52 FHDFLQLF-DET----KVQYGLARVSPPG-------SDVEKIIIIGWCPDSA 91 (141)
T ss_dssp HHHHHTCC-CTT----SCEEEEEEECCTT-------CSCCEEEEEEECCTTS
T ss_pred HHHHHhhC-CCC----ceEEEEEEEecCC-------CceeeEEEEEECCCCC
Confidence 66677777 444 5799999987544 2345678899999963
No 84
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=26.72 E-value=79 Score=22.92 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=28.1
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRP 132 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrp 132 (197)
.+++||++ |-.|||.+..+-+++.+.|.+|++.
T Consensus 7 ~VKV~~~~------tvairvp~~~~y~~L~~~l~~kL~l 39 (83)
T 1oey_A 7 TLKVHYKY------TVVMKTQPGLPYSQVRDMVSKKLEL 39 (83)
T ss_dssp EEEEESSS------EEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred EEEEEEEE------EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35677762 6789999999999999999999994
No 85
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=26.24 E-value=61 Score=23.25 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=25.0
Q ss_pred eeeEEeccccchHHHHHHHHhhcCCCcc
Q psy5451 108 TKCIRVASDATSQAVIETLIEKFRPDMR 135 (197)
Q Consensus 108 TKcIRVsSt~TT~dVI~~LleKFrpdnR 135 (197)
+-=+||+..+|+.++|+.|.+-|.++..
T Consensus 18 ~~DLRIP~~~tvK~Li~~l~ea~~l~~~ 45 (81)
T 2bps_A 18 VFDLRLSDYHPVKKVIDIAWQAQSVSMP 45 (81)
T ss_dssp EEEEEEETTSBTTHHHHHHHHHSCCCSC
T ss_pred eEEEECCCchhHHHHHHHHHHHhCCCcC
Confidence 4568999999999999999999998863
No 86
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=26.12 E-value=1.1e+02 Score=19.72 Aligned_cols=35 Identities=6% Similarity=0.094 Sum_probs=26.8
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|.++.+...++ +-.+.|..++|..++.+.+.++..
T Consensus 4 m~i~vk~~~g~--~~~~~v~~~~tv~~lk~~i~~~~g 38 (79)
T 2uyz_B 4 IKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQG 38 (79)
T ss_dssp EEEEEECTTCC--EEEEEEETTSCTHHHHHHHHHHHT
T ss_pred EEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHHC
Confidence 56666665444 235889999999999999999876
No 87
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=26.09 E-value=87 Score=22.32 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.9
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|+++.+..+++ +..+.|+.++|..++...+.++..
T Consensus 1 M~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~g 35 (152)
T 3b08_A 1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEG 35 (152)
T ss_dssp CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHC
T ss_pred CEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHHHHC
Confidence 55666654333 346899999999999999999987
No 88
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=25.24 E-value=2.2e+02 Score=21.96 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=30.4
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE 146 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe 146 (197)
+.|.++|.=.+|+.+++..+-.|+-+-+ .++|+|-.
T Consensus 22 ~~ktl~VD~S~~V~~lv~~Ic~kigI~n----~~ey~L~~ 57 (128)
T 2kc2_A 22 TVKTIMVDDSKTVTDMLMTICARIGITN----HDEYSLVR 57 (128)
T ss_dssp CEEEEEEEECSSHHHHHHHHHHHHTCCC----CSSEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHhCCCC----cccccccc
Confidence 7889999999999999999999998544 35888854
No 89
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.10 E-value=1.2e+02 Score=22.35 Aligned_cols=36 Identities=14% Similarity=0.342 Sum_probs=29.9
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+..|+. -.|.|..+.|+.++...|.++..
T Consensus 31 ~~m~I~Vk~~g~~---~~l~v~~~~TV~~LK~~I~~~~g 66 (125)
T 1j8c_A 31 KIIKVTVKTPKEK---EEFAVPENSSVQQFKEAISKRFK 66 (125)
T ss_dssp CCEEEEEECSSCE---EEEEECTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEEEeCCeE---EEEEECCCCcHHHHHHHHHHHHC
Confidence 4688888887443 46899999999999999999987
No 90
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=25.03 E-value=1.1e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=30.3
Q ss_pred ccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 92 ~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
.+.|+++.+..+++. -.|+|+.++|+.++...+-++..
T Consensus 18 ~~~m~i~Vk~~~g~~--~~l~v~~~~tV~~lK~~I~~~~g 55 (172)
T 3u30_A 18 GSHMQIFVKTLTGKT--ITLEVEPSDTIENVKAKIQDKEG 55 (172)
T ss_dssp -CCEEEEEEETTTEE--EEEEECTTCBHHHHHHHHHHHHC
T ss_pred CCcEEEEEEeCCCCE--EEEEECCCCcHHHHHHHHHHHHC
Confidence 356888888655543 35899999999999999999887
No 91
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=24.89 E-value=1.3e+02 Score=20.99 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=28.9
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+..|+. -.|.|+.++|+.++.+.|.++..
T Consensus 24 ~~m~I~Vk~~g~~---~~l~v~~~~TV~~LK~~I~~~~g 59 (101)
T 2klc_A 24 KIMKVTVKTPKEK---EEFAVPENSSVQQFKEEISKRFK 59 (101)
T ss_dssp CCEEEEEECSSCE---EEEEECSCCCHHHHHHHHHHHHT
T ss_pred CeEEEEEEeCCcE---EEEEECCCCCHHHHHHHHHHHHC
Confidence 3577777777543 47899999999999999999876
No 92
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.76 E-value=97 Score=21.22 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=25.9
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhc
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKF 130 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKF 130 (197)
|+++.+..+++ +-.|.|+.++|+.++.+.+.+++
T Consensus 1 M~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~ 34 (95)
T 1uel_A 1 MQVTLKTLQQQ--TFKIDIDPEETVKALKEKIESEK 34 (95)
T ss_dssp CEEEEEETTCC--EEEEECCTTSBHHHHHHHHHHHH
T ss_pred CEEEEEeCCCC--EEEEEECCCCHHHHHHHHHHhhc
Confidence 56677764333 22589999999999999999985
No 93
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=24.60 E-value=1.1e+02 Score=26.32 Aligned_cols=54 Identities=20% Similarity=0.448 Sum_probs=33.9
Q ss_pred eeEEEEEecccccccceeeEec----------cccccc-chheecc--ceeeeeecCCceeeeeeEE
Q psy5451 59 GVMRFYFQDSGQKVATKCIRVA----------SDATSQ-ADLLFHG--VMRFYFQDSGQKVATKCIR 112 (197)
Q Consensus 59 Gvmrf~~qd~~~~~~tk~irvs----------s~~~sq-d~~lF~G--vmr~~~~d~g~k~aTKcIR 112 (197)
+-||+|||....+...+|.==+ ....|. +-+-++| .+++|||....++..+|.-
T Consensus 176 ~~i~vf~q~~dn~i~~~~~d~~~W~~~~~~~~~~p~s~lAavs~~~~~~i~lf~~~~~n~i~~~~~~ 242 (312)
T 1ofz_A 176 GRLRIYYQATDNKIREHCWDSNSWYVGGFSASASAGVSIAAISWGSTPNIRVYWQKGREELYEAAYG 242 (312)
T ss_dssp TEEEEEEEBTTSEEEEEEESSSCEEEEEEEEECCTTCEEEEEEETTTTEEEEEEECTTSCEEEEEES
T ss_pred CCEEEEEEcCCCcEEEEEecCCcceECCEecCcCCCCCcEEEEeCCCCEEEEEEECCCCcEEEEEec
Confidence 5799999977666666665210 001111 2233554 8999999988787777654
No 94
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=24.48 E-value=1e+02 Score=25.70 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=56.4
Q ss_pred eeEEEEEecccccccceeeEeccccc---ccchheeccceeeeeecC------Cce---eeeeeEEeccccchHHHHHHH
Q psy5451 59 GVMRFYFQDSGQKVATKCIRVASDAT---SQADLLFHGVMRFYFQDS------GQK---VATKCIRVASDATSQAVIETL 126 (197)
Q Consensus 59 Gvmrf~~qd~~~~~~tk~irvss~~~---sqd~~lF~Gvmr~~~~d~------g~k---~aTKcIRVsSt~TT~dVI~~L 126 (197)
|-.++|.-=-++.-..|.||+.+..- +.|+=-|.|.|+-.++.+ ..+ -.+-.|.|.. ++-.++|+-+
T Consensus 54 ~dv~vyl~l~~~p~p~~~I~f~g~~lr~v~PdeRs~~~li~kaL~~~~~~~~~~~~~~~~~~pgi~v~~-~sle~ll~e~ 132 (211)
T 3aia_A 54 RDVVFYAVLYGQPNPPVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRR-LGFRNLVLEK 132 (211)
T ss_dssp TTEEEEEEECCSSSCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHHHHHSCTTGGGSCEEEETTEEEEC-CCHHHHHHHH
T ss_pred CCeEEEEEECCCCCCceEEEEcCccccccChhHHHHHHHHHHHHHhcccccccCCcccccCCCCeEEEc-CCHHHHHHHH
Confidence 44577776333333458999655553 334446777777666552 111 3356777765 6666666665
Q ss_pred HhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceee
Q psy5451 127 IEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLV 165 (197)
Q Consensus 127 leKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlv 165 (197)
.+.++ .+|..|++|+.-+....+.|+++
T Consensus 133 ~~~~~-----------~v~~L~E~G~~i~~~~~~~~~fv 160 (211)
T 3aia_A 133 LEEGK-----------NIYYLHMNGEDVENVDIENPVFI 160 (211)
T ss_dssp HHTTC-----------EEEEEEEEEEEGGGCCCCSEEEE
T ss_pred hhcCC-----------cEEEEcCCCCCCcccccCCcEEE
Confidence 54432 59999999984444332455554
No 95
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.20 E-value=1.5e+02 Score=19.88 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=28.1
Q ss_pred ceeeeeecCCceeeeeeEEeccc-----cchHHHHHHHHhhcC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASD-----ATSQAVIETLIEKFR 131 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt-----~TT~dVI~~LleKFr 131 (197)
.|+++.+..|+++ .|.|... +|+.++.+.|.++..
T Consensus 7 ~~~v~Vk~~~~~~---~i~v~~~~~~~~~TV~~LK~~i~~~~g 46 (92)
T 1wxv_A 7 GLTVTVTHSNEKH---DLHVTSQQGSSEPVVQDLAQVVEEVIG 46 (92)
T ss_dssp SEEEEEECSSSEE---EEEECCCSSSSSCBHHHHHHHHHHHTC
T ss_pred eEEEEEEECCEEE---EEEECCCcCcccCcHHHHHHHHHHHHC
Confidence 3777777776665 5889885 999999999998876
No 96
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=24.10 E-value=1.3e+02 Score=22.04 Aligned_cols=38 Identities=5% Similarity=-0.001 Sum_probs=31.4
Q ss_pred ccceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 92 ~Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
.|-|.++.+...++. ..+.|..+.|+.++...+.++..
T Consensus 79 ~~~m~i~vk~~~g~~--~~~~v~~~~tV~~lK~~i~~~~g 116 (159)
T 3rt3_B 79 DEPLSILVRNNKGRS--STYEVRLTQTVAHLKQQVSGLEG 116 (159)
T ss_dssp CCCEEEEEECTTSCE--EEEEECTTSBHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCE--EEEEeCCCCCHHHHHHHHHHHHC
Confidence 677889988865543 35899999999999999999876
No 97
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=23.50 E-value=1.4e+02 Score=21.09 Aligned_cols=34 Identities=6% Similarity=0.072 Sum_probs=27.5
Q ss_pred eeeeeecCCceeeeeeEEec-cccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVA-SDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVs-St~TT~dVI~~LleKFr 131 (197)
|.+++|...++. .|-|. .++|..++.+.|.+++.
T Consensus 8 M~irvrs~~G~~---~v~v~~~~~Tv~~LK~kI~~~~g 42 (107)
T 1wf9_A 8 TMLRVRSRDGLE---RVSVDGPHITVSQLKTLIQDQLQ 42 (107)
T ss_dssp EEEEEECSSCEE---EEEECCTTSBHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCE---EEEECCCCCcHHHHHHHHHHHhC
Confidence 677777665544 47788 89999999999999998
No 98
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.61 E-value=1.3e+02 Score=22.03 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=28.2
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
|.++.+...++ +..|-|..++|+.+|.+.+.+|..
T Consensus 29 m~I~VKtl~Gk--~i~lev~p~dTV~~lK~~Ia~k~G 63 (100)
T 1uh6_A 29 IEVVCNDRLGK--KVRVKCNTDDTIGDLKKLIAAQTG 63 (100)
T ss_dssp EEEEEECSSSS--CEEEEEETTSBHHHHHHHHHHHHC
T ss_pred EEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHHHhC
Confidence 77788877432 233889999999999999999987
No 99
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.26 E-value=1.7e+02 Score=19.19 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=27.9
Q ss_pred cceeeeeecCCceeeeeeE-EeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCI-RVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcI-RVsSt~TT~dVI~~LleKFr 131 (197)
+.|.++.+...++ .+-.| .|+.+.|+.++...+-++..
T Consensus 6 ~~m~i~Vk~~~g~-~~~~l~~v~~~~tV~~lK~~i~~~~g 44 (89)
T 1wy8_A 6 SGMWIQVRTIDGS-KTCTIEDVSRKATIEELRERVWALFD 44 (89)
T ss_dssp SCEEEEEEETTCS-CEEEEEEECTTCBHHHHHHHHHHHSC
T ss_pred CcEEEEEEECCCC-ceEEEEecCCCCCHHHHHHHHHHHHC
Confidence 4477777765332 13358 59999999999999998876
No 100
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.81 E-value=2e+02 Score=21.44 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=30.5
Q ss_pred ceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCC
Q psy5451 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPD 133 (197)
Q Consensus 94 vmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpd 133 (197)
.|.++++...+ .+..|.|..+.|+.+|.+.+.+.+..|
T Consensus 16 ~m~I~vKtl~G--~t~~lev~~s~TV~~lK~kI~~~~p~d 53 (116)
T 1wgh_A 16 MINLRLILVSG--KTKEFLFSPNDSASDIAKHVYDNWPMD 53 (116)
T ss_dssp SEEEEEECSSS--CEEEEEECTTCBHHHHHHHHHHSSSCC
T ss_pred eEEEEEEeCCC--CEEEEEECCcCHHHHHHHHHHHhcccc
Confidence 47788886544 566899999999999999999977544
No 101
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=21.25 E-value=1e+02 Score=26.45 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=32.2
Q ss_pred eEEEEEe---cccccccceeeEec----------ccccccchheec-cceeeeeecCCceeeeeeE
Q psy5451 60 VMRFYFQ---DSGQKVATKCIRVA----------SDATSQADLLFH-GVMRFYFQDSGQKVATKCI 111 (197)
Q Consensus 60 vmrf~~q---d~~~~~~tk~irvs----------s~~~sqd~~lF~-Gvmr~~~~d~g~k~aTKcI 111 (197)
-+|+||| +.......+|---+ ...|.-+-+-|. +.||+|||....++..+|.
T Consensus 129 ~i~Vf~q~~~~~dn~I~e~~~~g~W~~~~~lg~~~~gT~laa~s~~~~~i~vf~q~~dn~i~~~~~ 194 (312)
T 1ofz_A 129 NIRVYYQKSNLSGSSIHEYVWSGKWTAGASFGSTAPGTGIGATAIGPGRLRIYYQATDNKIREHCW 194 (312)
T ss_dssp EEEEEECSCCSTTEEEEEEEESSSEEEEEEEEEESTTCCEEEEEEETTEEEEEEEBTTSEEEEEEE
T ss_pred eEEEEEEeccCCCCeEEEEEccCCcccCCCcCCccCCCCcceeecCCCCEEEEEEcCCCcEEEEEe
Confidence 5889999 65555544443211 011112333355 7999999999888888876
No 102
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=20.63 E-value=2.5e+02 Score=20.36 Aligned_cols=36 Identities=3% Similarity=-0.070 Sum_probs=27.1
Q ss_pred eeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 95 mr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.++...++.+ ....++|+.++|+.+|...|-++..
T Consensus 7 v~l~V~~~~~~-~~~e~~v~~~~TV~~lK~ki~~~~G 42 (122)
T 1t0y_A 7 YDLEITTNATD-FPMEKKYPAGMSLNDLKKKLELVVG 42 (122)
T ss_dssp EEEEEEESSCC-SCEEEEEETTSBHHHHHHHHHHHHC
T ss_pred EEEEEEECCCC-ccEEEEeCCCCcHHHHHHHHHHHhC
Confidence 34444444444 4567899999999999999999987
No 103
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.45 E-value=1.6e+02 Score=20.65 Aligned_cols=37 Identities=16% Similarity=-0.090 Sum_probs=29.1
Q ss_pred cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcC
Q psy5451 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFR 131 (197)
Q Consensus 93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFr 131 (197)
+.|+++.+..+++. -.|.|..+.|..++...|.++..
T Consensus 22 ~~m~I~Vk~~~g~~--~~l~v~~~~TV~~LK~~I~~~~g 58 (106)
T 1ttn_A 22 YECQLRLRLSTGKD--LKLVVRSTDTVFHMKRRLHAAEG 58 (106)
T ss_dssp CSEEEEEEETTTEE--EEEEECTTSHHHHHHHHHHHTTC
T ss_pred CeEEEEEEcCCCCE--EEEEeCCCCcHHHHHHHHHHHHC
Confidence 45788888754432 35899999999999999998876
No 104
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=20.16 E-value=1.1e+02 Score=23.88 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=30.2
Q ss_pred eeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE
Q psy5451 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE 146 (197)
Q Consensus 107 aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe 146 (197)
..+.|||++..-.--||-.|+||..+.. +=.+||||=
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~---dWSDhaLWW 72 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKK---DWSDHALWW 72 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCC---CSSSSBEEE
T ss_pred ccEEEEEeeccccccchhhhhhhhcccc---cchHhhhhh
Confidence 6789999999999999999999976443 455888863
Done!