RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5451
(197 letters)
>gnl|CDD|176377 cd01782, AF6_RA_repeat1, Ubiquitin domain of AT-6, first repeat.
The AF-6 protein (also known as afadin and canoe) is a
multidomain cell junction protein that contains two
N-terminal Ras-associating (RA) domains in addition to
FHA (forkhead-associated), DIL (class V myosin homology
region), and PDZ domains and a proline-rich region. AF6
acts downstream of the Egfr (Epidermal Growth
Factor-receptor)/Ras signalling pathway and provides a
link from Egfr to cytoskeletal elements.
Length = 112
Score = 188 bits (479), Expect = 2e-62
Identities = 86/146 (58%), Positives = 98/146 (67%), Gaps = 34/146 (23%)
Query: 38 WNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRF 97
WNANRLDLF LS P +DL FHGVMRFYFQD G+KVATKCIRV+S AT++
Sbjct: 1 WNANRLDLFHLSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRD---------- 50
Query: 98 YFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLG 157
VI+TL EKFRPDMRMLS P Y+LYE+HENG+ER+L
Sbjct: 51 ------------------------VIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLL 86
Query: 158 TDEKPLLVQLNWHKDDREGRFLLRRI 183
DEKPL+VQLNWHKDDREGRFLL+
Sbjct: 87 DDEKPLVVQLNWHKDDREGRFLLKND 112
>gnl|CDD|176363 cd01768, RA, RA (Ras-associating) ubiquitin domain. The RA
(Ras-associating) domain is structurally similar to
ubiquitin and is present in one or two copies in a
number of signalling molecules that bind and regulate a
small GTPase called Ras or the Ras-related GTPases, Ral
and Rap. RA-containing proteins include RalGDS, AF6,
RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C
epsilon.
Length = 87
Score = 82.0 bits (203), Expect = 8e-21
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENG-D 152
V+R Y +D K +RV+ D T+Q VI+ L++KF D +YAL E+ +G
Sbjct: 1 VLRVYPED-PSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDD---DPEDYALVEVLGDGGL 56
Query: 153 ERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
ER L DE PL +QLN + + RFLLR+
Sbjct: 57 ERLLLPDECPLQIQLNAPRQREDLRFLLRK 86
>gnl|CDD|214612 smart00314, RA, Ras association (RalGDS/AF-6) domain. RasGTP
effectors (in cases of AF6, canoe and RalGDS); putative
RasGTP effectors in other cases. Kalhammer et al. have
shown that not all RA domains bind RasGTP. Predicted
structure similar to that determined, and that of the
RasGTP-binding domain of Raf kinase. Predicted RA
domains in PLC210 and nore1 found to bind RasGTP.
Included outliers (Grb7, Grb14, adenylyl cyclases etc.).
Length = 90
Score = 80.0 bits (198), Expect = 5e-20
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 91 FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN 150
V+R Y D K +RV+S T++ VI+ L+EKF EY L E+ +
Sbjct: 1 DTFVLRVYVDD-LPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDP---EEYVLVEVLPD 56
Query: 151 GDERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
G ER L DE PL +Q W + RF+LR+
Sbjct: 57 GKERVLPDDENPLQLQKLWPRRGPNLRFVLRK 88
>gnl|CDD|201444 pfam00788, RA, Ras association (RalGDS/AF-6) domain. RasGTP
effectors (in cases of AF6, canoe and RalGDS); putative
RasGTP effectors in other cases. Recent evidence (not
yet in MEDLINE) shows that some RA domains do NOT bind
RasGTP. Predicted structure similar to that determined,
and that of the RasGTP-binding domain of Raf kinase.
Length = 87
Score = 69.7 bits (171), Expect = 5e-16
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDE 153
V+R Y +D G K I V+S T+Q VI ++KF +Y L + G+E
Sbjct: 1 VLRVYTED-GTPGTYKTILVSSTTTAQEVIRAALKKFG---LADDPEDYVLVVLERGGEE 56
Query: 154 RKLGTDEKPLLVQLNWHKDDREGRFLLRRIDE 185
R L DEKPL +QL D RFLLRR ++
Sbjct: 57 RVLPDDEKPLQIQLQLPGDAS-SRFLLRRRED 87
>gnl|CDD|176373 cd01778, RASSF1_RA, Ubiquitin-like domain of RASSF1 tumour
supproessor protein. RASSF1 (also known as RASSF3 and
NORE1) is a tumour suppressor protein with a C-terminal
Ras-associating (RA) domain that binds Ras. RASSF1 also
binds the proapoptotic protein kinase MST1 and is thus
thought to regulate the proapoptotic signalling pathway.
RASSF1 also associates with microtubule-associated
proteins like MAP1B and regulates tubulin
polymerization. RASSF1 also binds CDC20 and regulates
mitosis by inhibiting the anaphase-promoting complex and
preventing degradation of cyclin A and cyclin B until
the spindle checkpoint becomes fully operational.
Length = 96
Score = 42.1 bits (99), Expect = 1e-05
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 96 RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVP-EYALYE---IHENG 151
K + ++S T + VIE L++KF ++ P ++AL+E
Sbjct: 8 STSLPLPKD--TAKHLHISSKTTVREVIEALLKKFL----VVDNPRKFALFEREHRTGQV 61
Query: 152 DERKLGTDEKPLLVQLNWHKDDREGRFLLRRID 184
RKL DE PL ++L F+L+ D
Sbjct: 62 YLRKLSDDECPLYLRLLAGPSTDALSFVLKEND 94
>gnl|CDD|176379 cd01784, rasfadin_RA, Ubiquitin-like domain of Rasfadin.
rasfadin_RA Rasfadin (RASSF2) belongs to a family of
Ras effectors/tumor suppressors that includes RASSF1 and
NORE1. RASSF2 binds directly to K-Ras in a
GTP-dependent manner via its RA (RAS-associated) domain.
RASSF2 promotes apoptosis and cell cycle arrest and is
frequently down-regulated in lung tumor cell lines.
Length = 87
Score = 37.9 bits (88), Expect = 3e-04
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 111 IRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
+R+ S T+ V++ L+ KF+ + S E+ALY +H +G++RKL + PL+ ++
Sbjct: 17 VRINSTMTTPQVLKLLLNKFKIEN---SAEEFALYIVHTSGEKRKLKATDYPLIARV 70
>gnl|CDD|176372 cd01777, SNX27_RA, Ubiquitin domain of SNX27 (sorting nexin protein
27). SNX27_RA SNX27 (sorting nexin protein 27)
belongs to a large family of endosome-localized proteins
related to sorting nexin1 which is implicated in
regulating membrane traffic. The domain architecture of
SNX27 includes an amino-terminal PDZ domain, a PX (PhoX
homologous) domain, and a carboxy-terminal RA
(RAS-associated) domain.
Length = 87
Score = 32.6 bits (74), Expect = 0.025
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKP--LL 164
AT +RV +AT+ V + L+ K M + +AL+E+ + RKL +E P L
Sbjct: 12 ATVTVRVRKNATTDQVYQALVAKA--GMDSYTQNYFALFEVINHSFVRKLAPNEFPHKLY 69
Query: 165 VQ 166
VQ
Sbjct: 70 VQ 71
>gnl|CDD|176382 cd01787, GRB7_RA, RA (RAS-associated like) domain of Grb7. Grb7_RA
The RA (RAS-associated like) domain of Grb7. Grb7 is
an adaptor molecule that mediates signal transduction
from multiple cell surface receptors to various
downstream signaling pathways. Grb7 and its related
family members Grb10 and Grb14 share a conserved domain
architecture that includes an amino-terminal
proline-rich region, a central segment termed the GM
region (for Grb and Mig) which includes the RA, PIR, and
PH domains, and a carboxyl-terminal SH2 domain.
Grb7/10/14 family proteins are phosphorylated on
serine/threonine as well as tyrosine residues and are
mainly localized to the cytoplasm.
Length = 85
Score = 31.7 bits (72), Expect = 0.056
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 107 ATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH-ENGDERKLGTDEKPLLV 165
A+K + V T++ V + L++K + L E ER E + V
Sbjct: 13 ASKSLEVDERMTARDVCQLLVDKNHCQDDS----SWTLVEHLPHLQLERLFEDHELVVEV 68
Query: 166 QLNWHKDDREGRFLLRR 182
WH R+
Sbjct: 69 LSTWHSAG-NSVLFFRK 84
>gnl|CDD|176378 cd01783, DAGK_delta_RA, Ubiquitin-like domain of Diacylgylcerol
kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase
(DAGK) phosphorylates the second messenger
diacylglycerol to phosphatidic acid as part of a protein
kinase C pathway. Nine mammalian DAGK isotypes have
been identified, which are classified into five
subgroups according to their domain architecture and the
DAGK-delta and -theta isozymes, which fall into one such
group, contain an RA (Ras-associated) domain. DAGKs also
contain a conserved catalytic domain (DAGKc), an
assesory domain (DAGKa), and an array of conserved
motifs that are likely to play a role in lipid-protein
and protein-protein interactions in various
DAG/PA-dependent signalling pathways.
Length = 97
Score = 31.3 bits (71), Expect = 0.081
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 92 HGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPE-YALYEIHEN 150
V++ Y VA IRV D T Q VI ++ F PE + L E+ +
Sbjct: 2 KEVVKVYPGWLRVGVAYVSIRVNKDTTVQDVILEVLPLFG---LQAECPESFRLIEVLLD 58
Query: 151 GD--ERKLGTDEKPLLVQLNWHKD 172
ER + EKPL ++L KD
Sbjct: 59 RGVVERTVLPQEKPLQIRLQLRKD 82
>gnl|CDD|176376 cd01781, AF6_RA_repeat2, Ubiquitin domain of AT-6, second repeat.
The AF-6 protein (also known as afadin and canoe) is a
multidomain cell junction protein that contains two
N-terminal Ras-associating (RA) domains in addition to
FHA (forkhead-associated), DIL (class V myosin homology
region), and PDZ domains and a proline-rich region. AF6
acts downstream of the Egfr (Epidermal Growth
Factor-receptor)/Ras signalling pathway and provides a
link from Egfr to cytoskeletal elements.
Length = 100
Score = 29.5 bits (66), Expect = 0.38
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKF-----RPDMRML---SVPEYAL 144
G ++ Y K I ++ + + ++ +EK+ PD L S +
Sbjct: 2 GTLKIYGGSLVPTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSNDDDRK 61
Query: 145 YEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
DER L DE PL + ++ FL R
Sbjct: 62 SSDLREIDERILDDDECPLFIMTAGPGENGFDSFLAIR 99
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain.
Length = 122
Score = 28.2 bits (63), Expect = 1.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 152 DERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNVSINHT 194
ER +G +++ +KDD + R L+RR D+ V NH
Sbjct: 30 KERGVGD------IKILKNKDDGKVRILMRR-DQVLKVCANHY 65
>gnl|CDD|176381 cd01786, STE50_RA, Ubiquitin-like domain of STE50_RA. STE50_RA
The fungal adaptor protein STE50 is an essential
component of three MAPK-mediated signalling pathways,
which control the mating response, invasive/filamentous
growth and osmotolerance (HOG pathway), respectively.
STE50 functions in cell signalling between the activated
G protein and STE11. The domain architecture of STE50
includes an amino-terminal SAM (sterile alpha motif)
domain in addition to the carboxy-terminal
ubiquitin-like RA (RAS-associated) domain. While the
SAM domain interacts with STE11, the RA domain interacts
with CDC42 and RAS. Modulation of signal transduction
by STE50 specifically affects the pheromone-response
pathway in yeast.
Length = 98
Score = 27.9 bits (62), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 141 EYALYEIHENGD-ERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
+Y L + GD ER L DEKP+++ N + +LRR
Sbjct: 57 QYVLVICY--GDQERILDLDEKPVIIFKNLKQQGLHPAIMLRR 97
>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain. Domain of apporximately 150
residues that stabilises the GTP-bound form of Ran (the
Ras-like nuclear small GTPase).
Length = 130
Score = 27.0 bits (60), Expect = 3.8
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 142 YALYEIHENGDERKLGTDEKPLLVQLNWHKDDRE-GRFLLRRIDEATNVSINHTGTQ 197
Y + ER +G +++ KD+ R ++RR D V NH +
Sbjct: 30 YRFANDKKEWKERGVGD------LKILKSKDNGGKVRIVMRR-DGVLKVCANHPIFK 79
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 27.6 bits (61), Expect = 4.6
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Query: 103 GQKVATKCIRVASDATSQAVI 123
G KVA KCI+ +DAT+QA +
Sbjct: 29 GNKVAVKCIK--NDATAQAFL 47
Score = 26.9 bits (59), Expect = 6.7
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 69 GQKVATKCIRVASDATSQADLLFHGVM 95
G KVA KCI+ +DAT+QA L VM
Sbjct: 29 GNKVAVKCIK--NDATAQAFLAEASVM 53
>gnl|CDD|176371 cd01776, Rin1_RA, Ubiquitin domain of RIN1 RAS effector. Rin1_RA
RIN1 is a RAS effector that binds with specificity and
high affinity to activated RAS via its carboxy-terminal
RA (RAS-associated) domain. RIN1 competes directly with
RAF1 for RAS binding and is thought to divert signaling
away from RAF and the MAPK pathway while also shunting
RAS signals through alternate pathways. In addition,
Rin1 and Rin2 are Rab5-binding proteins, binding
preferentially to the GTP-bound form, that enhance the
GDP-GTP exchange reaction on Rab5 that regulate the
docking and fusion processes of endocytic vesicles. In
addition to the RA domain, RIN1 and RIN2 have an SH2
(Src homology 2) domain, a proline-rich SH3 domain, and
a Vps9 domain.
Length = 87
Score = 26.1 bits (57), Expect = 4.7
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDER 154
+R FQD K + V T++ V + EKF+ EY+L+ E ++
Sbjct: 2 LRVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFKVT----QPEEYSLFLFVEETWQQ 57
Query: 155 KLGTDEKPLLVQLNWHKDDRE--GRFLLRRI 183
L D P ++ H + F+ RRI
Sbjct: 58 -LAPDTYPQRIKAELHSRPQPNTFHFVYRRI 87
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 27.1 bits (60), Expect = 5.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRML 137
V R +D G +CI + IETL+ FR ++ L
Sbjct: 116 VDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAAL 159
>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain. The RanBD is present in
RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these
proteins have a single RanBD, with the exception of
RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear
small GTPase, which regulates receptor-mediated
transport between the nucleus and the cytoplasm. RanGTP
hydrolysis is stimulated by RanGAP together with the
Ran-binding domain containing acessory proteins RanBP1
and RanBP2. These accessory proteins stabilize the
active GTP-bound form of Ran. The Ran-binding domain is
found in multiple copies in Nuclear pore complex
proteins. RabBD shares structural similarity to the PH
domain, but lacks detectable sequence similarity. The
RanBD proteins of the nuclear pore complex (NPC):
nucleoporin 1 (NUP1), NUP2, NUP61, and Nuclear Pore
complex Protein 9 (npp-9) are present in the parent, but
specific models were not made due to lineage. To date
there been no reports of inositol phosphate or
phosphoinositide binding by Ran-binding proteins.
Length = 111
Score = 26.1 bits (58), Expect = 6.6
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 153 ERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNVSINH 193
ER +G +++ HK+ + R L+RR ++ V +NH
Sbjct: 23 ERGVGD------LKILKHKETGKYRILMRR-EQVGKVCLNH 56
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 26.9 bits (60), Expect = 8.1
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 50 EPNDDLLFHGVMRFYFQDSGQKVATKCIRVASD-----ATSQ-ADLLFHGVMRFYFQDSG 103
P+D H ++D+ + A C A A A L+ GV F G
Sbjct: 59 APDDSPKLH------YEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVA---FDRHG 109
Query: 104 QKVAT------KCIRV--ASDATSQAVIETLIEKF--RPDMRMLS 138
Q +A RV A+D T +A++ TL E+ RP++ ++S
Sbjct: 110 QHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIIS 154
>gnl|CDD|176374 cd01779, Myosin_IXb_RA, ubitquitin-like domain of Myosin_IXb_RA.
Myosin_IXb_RA RasGTP binding domain from guanine
nucleotide exchange factors. In some proteins the domain
acts as a RasGTP effector (AF6, canoe and RalGDS, for
example), but in other cases it may not bind to RasGTP
at all.
Length = 105
Score = 25.6 bits (56), Expect = 9.0
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 95 MRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPD-MRMLSVPEYALYEIHEN-GD 152
+ Y Q + + + D+T+ VI+ +I + D + Y L E+ E+ G+
Sbjct: 13 LHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKC-----YVLAEVKESGGE 67
Query: 153 ERKLGTDEKPLLVQLNW-------HKDDREGRFLLR 181
E L + P+ L W H + FLL+
Sbjct: 68 EWVLDPTDSPVQRVLLWPRRAQEEHPQEDGYYFLLQ 103
>gnl|CDD|188042 TIGR00333, nrdI, ribonucleoside-diphosphate reductase 2, operon
protein nrdI. Ribonucleotide reductases (RNRs) are
enzymes that provide the precursors of DNA synthesis.
The three characterized classes of RNRs differ by their
metal cofactor and their stable organic radical. The
exact function of nrdI within the ribonucleotide
reductases has not yet been fully characterised
[Purines, pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 127
Score = 26.0 bits (57), Expect = 9.5
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 5 MKKNEEREALRGVIQQWNANRLDLFELSEP--NDQWNANRLDLFELSEPNDDL 55
+ K R LRGVI N N D F L+ + + N L FELS +D+
Sbjct: 62 LNKKHNRALLRGVIASGNKNFGDNFGLAGDVISRKLNVPLLYKFELSGTKNDV 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,845,103
Number of extensions: 894141
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 30
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)