RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5451
(197 letters)
>3ddc_B RAS association domain-containing family protein; oncogene,
tumorsuppressor, ubiquitin fold, RAS effector, RAP
rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A
{Mus musculus}
Length = 163
Score = 94.8 bits (235), Expect = 4e-25
Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 30 ELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDS--GQKVATKCIRVASDATSQA 87
E+ + D +N+ + ++D + G ++ + + A + DA +
Sbjct: 11 EIKQKIDSYNSREKHCLGMKL-SEDGTYTGFIKVHLKLRRPVTVPAGIRPQSIYDAIKEV 69
Query: 88 D--LLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALY 145
+ FY A K + ++S T VI+ L++KF ++AL+
Sbjct: 70 NPAATTDKRTSFYLPLD----AIKQMHISSTTTVSEVIQGLLDKFMVVDNPQ---KFALF 122
Query: 146 EIHENGDE---RKLGTDEKPLLVQLNWHKDDREGRFLLR 181
+ + +KL + PL ++L D F+L+
Sbjct: 123 KRIHKDGQVLFQKLSIADYPLYLRLLAGPDTDVLSFVLK 161
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 100
Score = 59.2 bits (143), Expect = 4e-12
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH-ENGD 152
V++ Y +D A + + VA+ AT++ V E L+++ + L E H
Sbjct: 11 VVKVYSEDG----ACRSVEVAAGATARHVCEMLVQRAHALSD----ETWGLVECHPHLAL 62
Query: 153 ERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
ER L E + VQ W + RF+ R+
Sbjct: 63 ERGLEDHESVVEVQAAWPVGG-DSRFVFRK 91
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.15.1.5
Length = 116
Score = 54.5 bits (131), Expect = 3e-10
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH---- 148
G +R Y + K I +++ T+ + +EK+ + + +Y + +
Sbjct: 10 GTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYG--LEKENPKDYCIARVMLPPG 67
Query: 149 ------ENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
E L DE PL + W D F L+R
Sbjct: 68 AQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLKR 107
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix,
structural genomics, structural genomics consortium,
SGC, cell adhesion; 2.60A {Homo sapiens}
Length = 166
Score = 50.1 bits (119), Expect = 3e-08
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEI----- 147
GV++ + K + ++++ +++ +E++ + +Y L ++
Sbjct: 36 GVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERY--ALDPRQAGQYVLCDVVGQAG 93
Query: 148 -----HENGDERKLGTDEKPLLVQLNWHKDDR-EGRFLLRRIDEA 186
+ R G EKPLL+Q W + RF LR+ +
Sbjct: 94 DAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDV 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 4e-04
Identities = 29/218 (13%), Positives = 54/218 (24%), Gaps = 80/218 (36%)
Query: 1 MSLVMKKNEEREALRGVIQQWNANRLDLFELSEPNDQW----NANRLDLFELSEPNDDLL 56
M + N +E ++ + + N++ P + N +S P L
Sbjct: 338 MLSI--SNLTQEQVQDYVNKTNSHL--------PAGKQVEISLVNGAKNLVVSGPPQSL- 386
Query: 57 FHGVMRFYFQDSGQKVATKCIRVASDATSQADLLF-----HGVMRF----------YFQD 101
+G + +K A Q+ + F RF
Sbjct: 387 -YG-----LNLTLRKAK------APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 102 SGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEK 161
A+ + D V F + +P +Y+ + D R L
Sbjct: 435 -----ASD--LINKDLVKNNV------SFNAKD--IQIP---VYDTFDGSDLRVLSGSIS 476
Query: 162 PLLVQ------LNWHKDDREGRFLLRRIDEATNVSINH 193
+V + W + T H
Sbjct: 477 ERIVDCIIRLPVKW--------------ETTTQFKATH 500
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling
protein/complex, RAS, ubiquitin superfold, oncogene,
GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP:
d.15.1.5 PDB: 2byf_A
Length = 117
Score = 36.3 bits (83), Expect = 0.001
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 17/88 (19%)
Query: 109 KCIRVASDATSQAVIETLIEKFRPDMRMLSVP---EYALYEIHENGDE-----------R 154
I+ +T+Q VI+ + K + + +LS P +Y L E R
Sbjct: 22 TVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQR 81
Query: 155 KLGTDEKPLLVQLNWHKDDREGRFLLRR 182
L E Q W G+F+L+
Sbjct: 82 VLLDQECVFQAQSKWKG---AGKFILKL 106
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 95
Score = 35.7 bits (82), Expect = 0.001
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 113 VASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKD 172
V T Q V+ L + R Y L E ER L E P++ W +
Sbjct: 24 VTEVTTCQEVVIALAQAIGRTGR------YTLIEKWR-DTERHLAPHENPIISLNKWGQY 76
Query: 173 DREGRFLLRRID 184
+ + +LRR
Sbjct: 77 ASDVQLILRRTG 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.026
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 120 QAV--IETLIEKFRPDMRMLSVPEYAL 144
QA+ ++ ++ + D S P A+
Sbjct: 20 QALKKLQASLKLYADD----SAPALAI 42
Score = 27.6 bits (60), Expect = 2.0
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 160 EKPLLVQLNWHKDDREGRFLLRRIDEATNVSINHT 194
EK L +L + L D A ++I T
Sbjct: 18 EKQALKKL-------QASLKLYADDSAPALAIKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.045
Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 58/222 (26%)
Query: 2 SLVMKKNEEREALRGVIQQWNANR----LDLFELSEPNDQWNANRLDLFELS-------- 49
++ ++ + + LR +++ L + NA + F LS
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLL--------NVQNAKAWNAFNLSCKILLTTR 273
Query: 50 -EPNDDLLFHGVMRFYFQDSGQKVAT---------KCIRV-ASDATSQA----------- 87
+ D L D T K + D +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 88 -DLLFHGVMRF-YFQDSGQKVATKCIRVASDATSQAVIETLIEK---FRPDMRMLSVPEY 142
+ + G+ + ++ T I + + A + ++ F P +P
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTI 390
Query: 143 AL----YEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLL 180
L +++ ++ + K LV+ K +E +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTISI 428
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 31.3 bits (70), Expect = 0.18
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 79 VASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLS 138
V + L + K ++ + +I +++ R +
Sbjct: 14 VDVEKEDVRILKVCFYSNSFNPGKN----FKLVKCTVQTEIREIITSILLSGRIGPNIRL 69
Query: 139 VPEYALYEIHENGDERKLGTDEKPL---LVQLNWHKDDREGRFLLR 181
Y L H DE + + + + E R+ L+
Sbjct: 70 AECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQ 115
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator;
structural genomics consortium, SGC, RAS-association
domain, alternative splicing; 2.10A {Homo sapiens} PDB:
2rgf_A 1lxd_A
Length = 140
Score = 29.3 bits (65), Expect = 0.47
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 108 TKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQL 167
K I V S + AVI ++K ++ +Y L +I + + K+ + + +
Sbjct: 40 YKSILVTSQDKAPAVIRKAMDKH--NLEEEEPEDYELLQILSDDRKLKI-PENANVFYAM 96
Query: 168 NWHKDDREGRFLLRRIDEATNVSINHTGT 196
N F+L++ V + H +
Sbjct: 97 N---STANYDFVLKKRTFTKGVKVKHGAS 122
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like,
SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR
{Homo sapiens}
Length = 86
Score = 28.4 bits (63), Expect = 0.48
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 94 VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDE 153
+ Y ++ Q + V + + V++ E D L E+ G E
Sbjct: 8 FLTVYLSNNEQHFTE--VPVTPETICRDVVDLCKEPGESD--------CHLAEVWC-GSE 56
Query: 154 RKLGTDEKPLLVQLNWHKDDREGRFLLR 181
R + +E+ V + E RF LR
Sbjct: 57 RPVADNERMFDVLQRFGSQRNEVRFFLR 84
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 28.6 bits (63), Expect = 1.7
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 113 VASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEK-PLLVQLNWHK 171
+AS T+ + + M ML Y E +N + +K P + +NW +
Sbjct: 444 LASGQTAASAEAKVGTLRHDPMAMLPFIGYNAGEYLQNWIDMGNKGGDKMPSIFLVNWFR 503
Query: 172 DDREGRFLL 180
+GRFL
Sbjct: 504 RGEDGRFLW 512
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 28.1 bits (62), Expect = 2.5
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 102 SGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPE-YALYEIHENGDERKLGTDE 160
+G++VA K R ++ I+ M+ L+ P + E+ + +KL ++
Sbjct: 38 TGEQVAIKQCRQELSPKNRERWCLEIQI----MKKLNHPNVVSAREVPD--GLQKLAPND 91
Query: 161 KPLLV 165
PLL
Sbjct: 92 LPLLA 96
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.7
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 6 KKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLL 56
+ E RE + +++WN + + E ++ N N F +P+ D++
Sbjct: 108 MEQEWREKAKKDLEEWNQRQSEQVEKNKIN---NRIADKAF-YQQPDADII 154
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex,
U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis,
PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G
2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Length = 76
Score = 25.0 bits (55), Expect = 5.6
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 160 EKPLLVQLNWHKDDREGRFLLRRIDEATNVSINHT 194
+K L ++LN R + +LR D N+ I+
Sbjct: 14 DKKLSLKLN---GGRHVQGILRGFDPFMNLVIDEC 45
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin
superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 110
Score = 25.4 bits (55), Expect = 6.8
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 153 ERKLGTDEKPLLVQLNWHKDD-REGRFLLRRIDE 185
+R +G +E+ + + +W ++ GR +L+ E
Sbjct: 77 QRAIGPEEEIMQILSSWFPEEGYMGRIVLKTQQE 110
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ;
2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A*
3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A*
Length = 368
Score = 26.3 bits (57), Expect = 7.4
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 136 MLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGR 177
M VP + + + + P++ L++ + EG+
Sbjct: 326 MFVVPSWVPWSLQAETQFDLFRFSDAPIMEALSFMRTKIEGQ 367
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,940,899
Number of extensions: 162902
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 24
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)