RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5451
         (197 letters)



>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 103

 Score = 96.5 bits (240), Expect = 6e-27
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 93  GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGD 152
           G +R Y       +  K I +++  T+   +   +EK+   +   +  +Y +  +     
Sbjct: 3   GTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYG--LEKENPKDYCIARVMLPPG 60

Query: 153 ----------ERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
                     E  L  DE PL +   W  D     F L+R
Sbjct: 61  AQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLKR 100


>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 70.7 bits (173), Expect = 5e-17
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 94  VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIH-ENGD 152
           V++ Y +D     A + + VA+ AT++ V E L+++            + L E H     
Sbjct: 11  VVKVYSEDG----ACRSVEVAAGATARHVCEMLVQRAHALSDE----TWGLVECHPHLAL 62

Query: 153 ERKLGTDEKPLLVQLNWHKDDREGRFLLRRI 183
           ER L   E  + VQ  W     + RF+ R+ 
Sbjct: 63  ERGLEDHESVVEVQAAWPVGG-DSRFVFRKN 92


>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 109

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 11/89 (12%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 109 KCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEI-----------HENGDERKLG 157
               +     ++ +++ ++   +         +Y L E             +   +R +G
Sbjct: 23  TVFTINGGTKAKQLLQQILTNEQ--DIKPVTTDYFLMEEKYFISKEKNECRKQPFQRAIG 80

Query: 158 TDEKPLLVQLNWH-KDDREGRFLLRRIDE 185
            +E+ + +  +W  ++   GR +L+   E
Sbjct: 81  PEEEIMQILSSWFPEEGYMGRIVLKTQQE 109


>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein
           8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 84

 Score = 31.2 bits (71), Expect = 0.014
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 113 VASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKD 172
           V    T Q V+  L +             Y L E      ER L   E P++    W + 
Sbjct: 17  VTEVTTCQEVVIALAQAIG------RTGRYTLIE-KWRDTERHLAPHENPIISLNKWGQY 69

Query: 173 DREGRFLLRR 182
             + + +LRR
Sbjct: 70  ASDVQLILRR 79


>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
           {Pseudaminobacter salicylatoxidans [TaxId: 93369]}
          Length = 351

 Score = 30.9 bits (69), Expect = 0.085
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 136 MLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGR 177
           M  VP +  + +            + P++  L++ +   EG+
Sbjct: 310 MFVVPSWVPWSLQAETQFDLFRFSDAPIMEALSFMRTKIEGQ 351


>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 299

 Score = 25.2 bits (54), Expect = 5.3
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 94  VMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEY-ALYEIHENGD 152
           V +   +++ Q VA K I++   + ++  I     +    ++ LS P    L +   +  
Sbjct: 14  VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 73

Query: 153 ERKL 156
              L
Sbjct: 74  NISL 77


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 24.8 bits (54), Expect = 8.8
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 113 VASDATSQAVIETLIEKFRPDMRMLSVPEYALYE-IHENGDERKLGTDEKPLLVQLNWHK 171
           + S+AT+ A  +  I    P   M     Y   + +       +    + P +  +NW +
Sbjct: 201 MRSEATAAAEHKGKIIMHDP-FAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFR 259

Query: 172 DDREGRFL 179
            D+EG+FL
Sbjct: 260 KDKEGKFL 267


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 713,341
Number of extensions: 30688
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 11
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)