Query psy5452
Match_columns 89
No_of_seqs 151 out of 1023
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 17:55:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02740 protein tyrosine phos 99.9 2.1E-27 4.5E-32 157.0 9.9 77 6-85 220-296 (298)
2 PHA02742 protein tyrosine phos 99.9 2.9E-25 6.4E-30 147.1 9.7 71 7-80 229-299 (303)
3 PHA02738 hypothetical protein; 99.9 1.5E-24 3.2E-29 144.7 9.2 72 7-81 227-298 (320)
4 PHA02747 protein tyrosine phos 99.9 2.1E-24 4.5E-29 143.6 9.6 75 7-84 229-306 (312)
5 PHA02746 protein tyrosine phos 99.9 2.2E-24 4.8E-29 144.0 9.1 72 7-81 247-318 (323)
6 KOG0790|consensus 99.9 2.1E-23 4.5E-28 142.0 4.4 76 6-81 450-525 (600)
7 smart00404 PTPc_motif Protein 99.9 6E-21 1.3E-25 108.0 8.3 67 6-74 38-104 (105)
8 smart00012 PTPc_DSPc Protein t 99.9 6E-21 1.3E-25 108.0 8.3 67 6-74 38-104 (105)
9 COG5599 PTP2 Protein tyrosine 99.8 1.1E-21 2.4E-26 126.4 5.4 74 6-79 217-296 (302)
10 smart00194 PTPc Protein tyrosi 99.8 3.1E-21 6.7E-26 125.1 7.0 65 7-74 193-257 (258)
11 cd00047 PTPc Protein tyrosine 99.8 6.3E-21 1.4E-25 121.8 7.5 66 6-74 165-230 (231)
12 KOG0792|consensus 99.8 6.2E-21 1.4E-25 139.1 7.9 72 6-80 1062-1133(1144)
13 PF00102 Y_phosphatase: Protei 99.8 1E-20 2.2E-25 120.2 7.2 68 5-75 168-235 (235)
14 KOG0791|consensus 99.8 1.5E-20 3.3E-25 125.3 6.2 74 6-82 286-359 (374)
15 KOG4228|consensus 99.8 6.1E-21 1.3E-25 139.8 3.2 75 5-82 728-802 (1087)
16 KOG0789|consensus 99.8 2.9E-18 6.4E-23 116.9 9.0 73 5-79 297-369 (415)
17 KOG4228|consensus 99.7 1.6E-18 3.4E-23 127.3 5.5 70 6-78 1017-1086(1087)
18 KOG0793|consensus 99.7 2.8E-18 6.1E-23 121.9 5.9 77 6-84 926-1002(1004)
19 PRK15375 pathogenicity island 99.7 1.5E-17 3.3E-22 115.3 8.2 64 8-78 467-531 (535)
20 PTZ00242 protein tyrosine phos 99.6 2E-15 4.3E-20 92.9 8.0 61 5-74 96-156 (166)
21 KOG1720|consensus 99.5 9.4E-14 2E-18 87.3 7.2 64 7-78 147-210 (225)
22 PTZ00393 protein tyrosine phos 99.5 1.1E-13 2.4E-18 88.9 7.2 60 6-75 169-228 (241)
23 cd00127 DSPc Dual specificity 99.4 3.8E-12 8.2E-17 75.4 7.4 57 6-70 80-136 (139)
24 smart00195 DSPc Dual specifici 99.4 3.8E-12 8.3E-17 75.6 7.4 58 5-70 76-133 (138)
25 PF00782 DSPc: Dual specificit 99.3 8.9E-12 1.9E-16 73.5 5.5 59 5-71 71-129 (133)
26 COG2453 CDC14 Predicted protei 99.2 5E-11 1.1E-15 74.2 6.8 63 6-75 104-166 (180)
27 PF13350 Y_phosphatase3: Tyros 99.2 2.3E-12 5E-17 78.9 -1.6 33 4-37 122-154 (164)
28 PRK12361 hypothetical protein; 98.9 6E-09 1.3E-13 74.1 6.8 60 6-72 174-233 (547)
29 PF03162 Y_phosphatase2: Tyros 98.7 3.2E-08 7E-13 60.9 4.6 46 3-57 87-132 (164)
30 KOG2836|consensus 98.6 1.2E-07 2.6E-12 56.6 5.5 58 3-70 93-150 (173)
31 KOG1719|consensus 98.5 4.5E-07 9.9E-12 55.2 6.4 59 5-71 107-165 (183)
32 PF05706 CDKN3: Cyclin-depende 98.5 1.8E-07 3.8E-12 57.5 3.8 26 6-31 132-157 (168)
33 TIGR01244 conserved hypothetic 98.4 7.4E-07 1.6E-11 53.1 4.3 41 6-56 85-125 (135)
34 COG2365 Protein tyrosine/serin 98.4 2.9E-07 6.3E-12 60.0 2.6 31 5-35 134-164 (249)
35 KOG2283|consensus 98.1 1.5E-06 3.2E-11 60.6 2.3 63 3-72 103-170 (434)
36 KOG1718|consensus 98.1 6.9E-06 1.5E-10 50.8 4.7 49 6-62 93-141 (198)
37 KOG1716|consensus 98.1 1.1E-05 2.3E-10 53.6 5.3 51 5-63 153-203 (285)
38 PF14566 PTPlike_phytase: Inos 97.9 1.1E-05 2.5E-10 48.8 2.4 27 5-31 122-148 (149)
39 COG5350 Predicted protein tyro 97.6 0.00015 3.2E-09 44.2 4.6 54 5-65 91-144 (172)
40 KOG1717|consensus 97.6 0.00013 2.9E-09 48.2 4.6 51 4-62 248-298 (343)
41 PLN02727 NAD kinase 97.6 8.3E-05 1.8E-09 55.9 3.5 28 4-31 338-365 (986)
42 KOG1572|consensus 97.3 0.00017 3.8E-09 46.7 2.3 27 3-29 144-170 (249)
43 KOG4471|consensus 97.3 0.00026 5.6E-09 51.1 3.3 27 5-31 372-398 (717)
44 PF04273 DUF442: Putative phos 96.8 0.0016 3.4E-08 37.7 2.9 22 6-28 85-106 (110)
45 PF06602 Myotub-related: Myotu 96.5 0.004 8.6E-08 42.7 3.6 27 5-31 229-255 (353)
46 KOG2386|consensus 96.4 0.0018 3.9E-08 44.9 1.8 55 5-67 122-176 (393)
47 KOG1089|consensus 96.1 0.0069 1.5E-07 43.8 3.3 25 6-30 343-367 (573)
48 cd01518 RHOD_YceA Member of th 90.8 0.34 7.4E-06 26.8 2.8 21 5-26 59-79 (101)
49 cd01523 RHOD_Lact_B Member of 90.4 0.44 9.5E-06 26.3 3.1 20 5-25 59-78 (100)
50 PLN02160 thiosulfate sulfurtra 88.7 0.68 1.5E-05 27.4 3.1 20 5-25 79-98 (136)
51 cd01533 4RHOD_Repeat_2 Member 87.7 1.1 2.3E-05 25.2 3.4 17 6-23 65-81 (109)
52 PF04179 Init_tRNA_PT: Initiat 86.5 1 2.2E-05 32.2 3.4 27 5-31 374-400 (451)
53 COG0607 PspE Rhodanese-related 86.4 1 2.2E-05 24.9 2.8 19 6-25 60-78 (110)
54 cd01448 TST_Repeat_1 Thiosulfa 82.8 1.4 3E-05 25.1 2.3 23 5-28 77-99 (122)
55 COG3453 Uncharacterized protei 81.4 1.6 3.5E-05 25.9 2.2 14 6-19 86-99 (130)
56 cd01530 Cdc25 Cdc25 phosphatas 80.5 2.5 5.4E-05 24.4 2.9 22 5-26 66-87 (121)
57 cd01529 4RHOD_Repeats Member o 79.4 3.2 7E-05 22.5 3.0 19 5-24 54-72 (96)
58 cd01526 RHOD_ThiF Member of th 79.2 2.6 5.6E-05 24.2 2.6 20 5-25 70-89 (122)
59 cd01447 Polysulfide_ST Polysul 79.0 3.4 7.3E-05 22.5 3.0 17 5-22 59-75 (103)
60 cd01519 RHOD_HSP67B2 Member of 77.8 3.6 7.9E-05 22.6 2.9 18 5-23 64-81 (106)
61 TIGR03865 PQQ_CXXCW PQQ-depend 77.3 3.2 6.9E-05 25.4 2.8 21 5-25 114-134 (162)
62 PRK10287 thiosulfate:cyanide s 75.5 5.2 0.00011 22.7 3.2 19 6-25 59-77 (104)
63 cd01522 RHOD_1 Member of the R 75.3 4.9 0.00011 22.9 3.1 20 5-25 62-81 (117)
64 cd01532 4RHOD_Repeat_1 Member 74.8 4.5 9.8E-05 21.9 2.7 21 6-26 49-69 (92)
65 cd01525 RHOD_Kc Member of the 73.6 4 8.7E-05 22.4 2.4 19 7-26 65-83 (105)
66 COG5495 Uncharacterized conser 73.4 3 6.4E-05 27.7 2.0 21 5-26 89-109 (289)
67 PRK00142 putative rhodanese-re 73.2 6 0.00013 26.9 3.5 21 5-26 169-189 (314)
68 TIGR02981 phageshock_pspE phag 72.8 5.7 0.00012 22.3 2.9 19 6-25 57-75 (101)
69 cd01527 RHOD_YgaP Member of th 72.5 7.1 0.00015 21.2 3.2 18 5-23 52-69 (99)
70 cd01528 RHOD_2 Member of the R 72.3 6.6 0.00014 21.5 3.1 18 6-24 57-74 (101)
71 cd01443 Cdc25_Acr2p Cdc25 enzy 71.7 5.9 0.00013 22.3 2.8 20 6-25 65-84 (113)
72 cd01521 RHOD_PspE2 Member of t 71.3 7.6 0.00016 21.7 3.2 19 5-23 62-81 (110)
73 cd01444 GlpE_ST GlpE sulfurtra 69.8 9.2 0.0002 20.4 3.3 18 5-23 54-71 (96)
74 PRK01415 hypothetical protein; 67.8 8.5 0.00018 25.4 3.2 21 5-26 169-189 (247)
75 PRK07709 fructose-bisphosphate 67.1 14 0.0003 25.0 4.1 22 7-28 203-224 (285)
76 cd01520 RHOD_YbbB Member of th 67.1 9.3 0.0002 22.1 3.0 21 5-25 84-104 (128)
77 cd01531 Acr2p Eukaryotic arsen 67.0 7.9 0.00017 21.7 2.7 19 6-24 61-79 (113)
78 PRK15378 inositol phosphate ph 66.4 2.7 5.8E-05 30.6 0.7 16 11-26 460-475 (564)
79 PRK08610 fructose-bisphosphate 66.3 15 0.00032 24.9 4.1 70 7-85 203-280 (286)
80 PF05925 IpgD: Enterobacterial 64.7 2.1 4.6E-05 31.2 0.0 20 7-26 453-472 (559)
81 PF10727 Rossmann-like: Rossma 64.7 4.6 0.0001 23.8 1.4 14 6-19 95-108 (127)
82 cd01449 TST_Repeat_2 Thiosulfa 64.5 9.1 0.0002 21.4 2.6 18 6-24 77-94 (118)
83 PRK07998 gatY putative fructos 63.9 17 0.00038 24.5 4.1 22 5-26 197-218 (283)
84 TIGR00167 cbbA ketose-bisphosp 63.0 12 0.00026 25.3 3.2 70 7-85 206-283 (288)
85 PRK05600 thiamine biosynthesis 61.8 12 0.00027 26.0 3.3 18 7-25 332-349 (370)
86 COG0191 Fba Fructose/tagatose 59.6 31 0.00067 23.4 4.7 77 7-84 204-280 (286)
87 PF02302 PTS_IIB: PTS system, 59.5 12 0.00027 19.9 2.5 14 10-23 2-15 (90)
88 PRK11784 tRNA 2-selenouridine 59.2 13 0.00029 25.6 3.1 22 6-27 87-108 (345)
89 cd00158 RHOD Rhodanese Homolog 58.2 19 0.00041 18.5 3.1 18 5-23 48-65 (89)
90 TIGR00853 pts-lac PTS system, 57.5 11 0.00024 21.0 2.1 68 7-79 3-73 (95)
91 PRK07414 cob(I)yrinic acid a,c 57.3 21 0.00045 22.5 3.5 25 5-29 19-43 (178)
92 PRK12737 gatY tagatose-bisphos 56.3 27 0.00058 23.6 4.1 70 7-85 202-279 (284)
93 TIGR01858 tag_bisphos_ald clas 55.8 19 0.00041 24.3 3.3 20 7-26 200-219 (282)
94 PF00580 UvrD-helicase: UvrD/R 55.5 12 0.00025 24.4 2.3 23 6-28 12-34 (315)
95 COG3830 ACT domain-containing 55.4 15 0.00032 20.6 2.3 19 16-34 9-27 (90)
96 PRK05320 rhodanese superfamily 55.1 16 0.00034 24.2 2.8 20 6-26 174-193 (257)
97 PRK11493 sseA 3-mercaptopyruva 53.6 13 0.00028 24.6 2.2 13 6-18 230-242 (281)
98 PRK10310 PTS system galactitol 52.5 20 0.00043 19.8 2.6 17 9-26 4-20 (94)
99 smart00450 RHOD Rhodanese Homo 52.2 27 0.00058 18.2 3.1 16 5-21 54-69 (100)
100 PRK12857 fructose-1,6-bisphosp 52.0 38 0.00081 22.9 4.2 22 7-28 202-223 (284)
101 PRK07411 hypothetical protein; 51.3 20 0.00043 25.1 2.9 18 6-24 341-358 (390)
102 KOG1530|consensus 49.9 15 0.00033 22.1 1.9 18 5-23 87-104 (136)
103 PF01116 F_bP_aldolase: Fructo 49.5 9 0.00019 25.8 1.0 70 7-85 205-282 (287)
104 cd05567 PTS_IIB_mannitol PTS_I 48.5 25 0.00054 18.9 2.5 17 9-26 2-18 (87)
105 PF11278 DUF3079: Protein of u 48.3 7.5 0.00016 19.2 0.4 12 12-23 28-39 (52)
106 cd01524 RHOD_Pyr_redox Member 47.2 18 0.00039 19.3 1.8 13 5-17 49-61 (90)
107 PLN02723 3-mercaptopyruvate su 46.8 18 0.0004 24.5 2.2 13 6-18 268-280 (320)
108 cd01534 4RHOD_Repeat_3 Member 45.4 39 0.00084 18.1 3.1 17 6-23 55-71 (95)
109 PRK09195 gatY tagatose-bisphos 45.3 55 0.0012 22.1 4.2 22 7-28 202-223 (284)
110 COG2897 SseA Rhodanese-related 45.2 34 0.00074 23.1 3.2 24 5-28 232-255 (285)
111 PRK01269 tRNA s(4)U8 sulfurtra 43.8 29 0.00064 25.0 2.9 21 5-26 447-467 (482)
112 cd01535 4RHOD_Repeat_4 Member 43.3 45 0.00098 19.9 3.3 13 5-17 47-59 (145)
113 PF13476 AAA_23: AAA domain; P 43.2 32 0.0007 20.6 2.8 28 6-33 18-45 (202)
114 PRK00162 glpE thiosulfate sulf 41.9 23 0.00051 19.5 1.8 17 5-22 56-72 (108)
115 TIGR01859 fruc_bis_ald_ fructo 41.6 67 0.0015 21.5 4.2 23 7-29 200-222 (282)
116 PRK05986 cob(I)alamin adenolsy 41.5 67 0.0015 20.4 4.0 25 6-30 21-45 (191)
117 PRK12738 kbaY tagatose-bisphos 40.0 62 0.0014 21.9 3.8 22 6-27 201-222 (286)
118 PRK07413 hypothetical protein; 39.4 44 0.00096 23.6 3.1 25 5-29 198-222 (382)
119 cd00009 AAA The AAA+ (ATPases 38.7 59 0.0013 17.9 3.3 24 5-28 17-40 (151)
120 cd00561 CobA_CobO_BtuR ATP:cor 38.6 79 0.0017 19.4 3.9 24 7-30 2-25 (159)
121 PRK06806 fructose-bisphosphate 37.9 56 0.0012 22.0 3.4 22 6-27 199-220 (281)
122 PF13191 AAA_16: AAA ATPase do 37.3 82 0.0018 18.6 3.9 26 4-29 21-46 (185)
123 TIGR00708 cobA cob(I)alamin ad 36.9 95 0.0021 19.4 4.1 26 5-30 3-28 (173)
124 PRK08903 DnaA regulatory inact 36.6 54 0.0012 20.6 3.1 25 5-29 40-64 (227)
125 KOG0208|consensus 35.4 60 0.0013 26.2 3.5 66 8-73 852-925 (1140)
126 PRK09629 bifunctional thiosulf 34.6 50 0.0011 24.7 3.0 18 6-24 222-239 (610)
127 PRK06801 hypothetical protein; 34.5 71 0.0015 21.6 3.5 22 7-28 203-224 (286)
128 PF06309 Torsin: Torsin; Inte 33.6 49 0.0011 19.7 2.3 19 5-23 49-69 (127)
129 PF00581 Rhodanese: Rhodanese- 33.0 61 0.0013 17.4 2.6 22 5-27 65-86 (113)
130 PRK13399 fructose-1,6-bisphosp 33.0 1E+02 0.0022 21.6 4.0 13 7-19 226-238 (347)
131 KOG1529|consensus 33.0 57 0.0012 22.2 2.8 24 6-29 235-258 (286)
132 COG3973 Superfamily I DNA and 32.8 31 0.00068 26.2 1.7 23 2-24 221-243 (747)
133 PF04445 SAM_MT: Putative SAM- 32.7 52 0.0011 21.6 2.5 22 6-27 74-95 (234)
134 PRK10812 putative DNAse; Provi 32.3 18 0.00039 23.9 0.4 13 6-18 123-135 (265)
135 PF06564 YhjQ: YhjQ protein; 32.2 54 0.0012 21.7 2.6 23 14-36 9-31 (243)
136 PRK07878 molybdopterin biosynt 32.0 67 0.0015 22.5 3.2 18 5-23 341-358 (392)
137 smart00274 FOLN Follistatin-N- 31.0 34 0.00073 14.4 1.0 7 12-18 5-11 (26)
138 PHA00447 lysozyme 30.9 42 0.0009 20.1 1.8 15 4-18 7-21 (142)
139 PF14532 Sigma54_activ_2: Sigm 30.6 56 0.0012 18.9 2.3 22 5-26 19-40 (138)
140 COG2805 PilT Tfp pilus assembl 30.5 53 0.0012 22.9 2.4 31 3-33 121-151 (353)
141 cd00133 PTS_IIB PTS_IIB: subun 30.4 52 0.0011 16.6 2.0 17 10-26 2-18 (84)
142 COG4551 Predicted protein tyro 30.3 25 0.00055 19.9 0.7 30 52-81 73-102 (109)
143 PRK09197 fructose-bisphosphate 30.1 1.7E+02 0.0036 20.6 4.7 20 7-26 249-268 (350)
144 COG0084 TatD Mg-dependent DNas 30.1 21 0.00046 23.7 0.4 11 8-18 150-160 (256)
145 PF01695 IstB_IS21: IstB-like 29.9 1.3E+02 0.0028 18.5 3.9 48 7-56 47-94 (178)
146 PF01656 CbiA: CobQ/CobB/MinD/ 29.6 1.3E+02 0.0028 18.0 3.9 24 10-33 2-25 (195)
147 PHA03338 US22 family homolog; 29.0 40 0.00087 23.1 1.6 18 11-28 160-177 (344)
148 PF11385 DUF3189: Protein of u 28.9 70 0.0015 19.5 2.5 21 10-30 2-22 (148)
149 PF14293 YWFCY: YWFCY protein 28.7 58 0.0013 16.9 1.8 14 63-76 26-39 (61)
150 PRK11773 uvrD DNA-dependent he 28.6 72 0.0016 24.2 3.0 24 5-28 20-43 (721)
151 TIGR03167 tRNA_sel_U_synt tRNA 28.6 86 0.0019 21.4 3.1 20 9-28 76-95 (311)
152 cd00947 TBP_aldolase_IIB Tagat 28.4 1.4E+02 0.0029 20.2 4.0 20 7-26 196-215 (276)
153 PRK11449 putative deoxyribonuc 28.3 25 0.00054 23.1 0.5 10 7-16 127-136 (258)
154 PRK08185 hypothetical protein; 27.5 1.3E+02 0.0028 20.4 3.8 18 7-24 198-215 (283)
155 PF05124 S_layer_C: S-layer li 27.1 60 0.0013 21.2 2.1 19 15-33 203-221 (222)
156 PRK08939 primosomal protein Dn 27.0 2.1E+02 0.0045 19.4 5.5 48 6-55 155-202 (306)
157 PF02572 CobA_CobO_BtuR: ATP:c 26.7 95 0.0021 19.3 2.9 24 6-29 2-25 (172)
158 PF13086 AAA_11: AAA domain; P 26.7 1.2E+02 0.0026 18.5 3.4 23 9-31 19-41 (236)
159 PRK10425 DNase TatD; Provision 26.6 22 0.00049 23.4 0.1 10 6-15 120-129 (258)
160 PRK10742 putative methyltransf 25.9 1.1E+02 0.0024 20.4 3.2 22 6-27 87-108 (250)
161 PF05891 Methyltransf_PK: AdoM 25.8 49 0.0011 21.6 1.5 16 7-22 55-70 (218)
162 KOG4388|consensus 25.6 48 0.001 25.3 1.6 13 6-18 394-406 (880)
163 PRK09196 fructose-1,6-bisphosp 25.5 1.9E+02 0.0041 20.3 4.3 14 7-20 226-239 (347)
164 TIGR00105 L31 ribosomal protei 25.1 48 0.001 17.4 1.1 15 5-19 7-21 (68)
165 COG4992 ArgD Ornithine/acetylo 24.8 38 0.00082 24.2 0.9 14 16-29 228-241 (404)
166 PF00308 Bac_DnaA: Bacterial d 24.8 1.9E+02 0.0042 18.4 5.1 25 8-32 35-59 (219)
167 PRK07315 fructose-bisphosphate 24.7 1.5E+02 0.0032 20.1 3.7 21 7-27 202-222 (293)
168 PF01443 Viral_helicase1: Vira 24.5 88 0.0019 19.5 2.5 20 10-29 1-20 (234)
169 cd00453 FTBP_aldolase_II Fruct 24.4 2.1E+02 0.0046 20.1 4.4 17 7-23 242-258 (340)
170 COG0161 BioA Adenosylmethionin 24.3 33 0.00071 24.8 0.5 14 16-29 259-272 (449)
171 PF06777 DUF1227: Protein of u 24.2 1.2E+02 0.0026 18.5 2.9 30 54-83 50-79 (146)
172 PRK05835 fructose-bisphosphate 23.9 1.5E+02 0.0032 20.4 3.6 16 6-21 203-218 (307)
173 cd01310 TatD_DNAse TatD like p 23.6 32 0.0007 21.7 0.4 12 6-17 120-131 (251)
174 smart00644 Ami_2 Ami_2. 23.3 53 0.0012 18.6 1.2 12 8-19 4-15 (126)
175 cd00946 FBP_aldolase_IIA Class 23.0 2E+02 0.0044 20.1 4.2 23 7-29 245-267 (345)
176 PRK08762 molybdopterin biosynt 23.0 1.2E+02 0.0027 21.0 3.2 18 5-23 55-72 (376)
177 TIGR01075 uvrD DNA helicase II 22.5 1.1E+02 0.0024 23.2 3.1 24 5-28 15-38 (715)
178 cd05563 PTS_IIB_ascorbate PTS_ 22.4 1.2E+02 0.0026 15.9 2.5 15 10-24 2-16 (86)
179 TIGR01521 FruBisAldo_II_B fruc 21.9 2.1E+02 0.0046 20.1 4.0 13 7-19 224-236 (347)
180 PRK05597 molybdopterin biosynt 21.8 1.2E+02 0.0027 20.9 3.0 18 6-24 313-330 (355)
181 COG3414 SgaB Phosphotransferas 21.2 1E+02 0.0022 17.2 2.1 15 9-23 3-17 (93)
182 COG0160 GabT 4-aminobutyrate a 21.2 32 0.0007 24.8 0.0 14 16-29 266-279 (447)
183 PF13341 RAG2_PHD: RAG2 PHD do 21.2 65 0.0014 17.2 1.2 14 6-19 25-38 (78)
184 TIGR01520 FruBisAldo_II_A fruc 21.0 2.4E+02 0.0052 19.9 4.2 21 9-29 259-279 (357)
185 smart00305 HintC Hint (Hedgeho 20.9 70 0.0015 15.0 1.2 12 8-19 34-45 (46)
186 PRK10919 ATP-dependent DNA hel 20.8 1.3E+02 0.0027 22.9 3.0 24 5-28 13-36 (672)
187 PF05938 Self-incomp_S1: Plant 20.6 65 0.0014 18.0 1.2 18 6-23 11-28 (110)
188 PF01451 LMWPc: Low molecular 20.6 1.4E+02 0.0029 17.2 2.6 20 10-29 1-20 (138)
189 PF09289 FOLN: Follistatin/Ost 20.6 31 0.00066 14.1 -0.1 7 12-18 4-10 (22)
190 PF13469 Sulfotransfer_3: Sulf 20.4 1.1E+02 0.0024 18.0 2.3 16 9-27 2-17 (215)
191 PF04851 ResIII: Type III rest 20.3 1.8E+02 0.0039 16.9 3.2 20 7-26 25-44 (184)
No 1
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.95 E-value=2.1e-27 Score=157.05 Aligned_cols=77 Identities=12% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHhcccc
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQLRMID 85 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~~~~~ 85 (89)
..+|+||||++|+||||+||++++++.++.+ ++.+|+.++++++|+||++++++.+||.|||+++.+|+...+++++
T Consensus 220 ~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~---~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~~~~~~~~ 296 (298)
T PHA02740 220 KIAPIIIDCIDGISSSAVFCVFDICATEFDK---TGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLKEKFDILK 296 (298)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHHHHHHh---cCcccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHHHhhccee
Confidence 4689999999999999999999999999987 6789999999999999999999999999999999999999988764
No 2
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=2.9e-25 Score=147.14 Aligned_cols=71 Identities=35% Similarity=0.534 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQ 80 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~ 80 (89)
.+|+||||++|+||||+||++++++.++.+ .+.+++.++++.+|+||++++++.+||.|||+++++|+...
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~---~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~ 299 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNE---RAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLM 299 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999987 56789999999999999999999999999999999998753
No 3
>PHA02738 hypothetical protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=144.67 Aligned_cols=72 Identities=31% Similarity=0.460 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHh
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQL 81 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~ 81 (89)
.+|+||||++|+||||+||++++++.++.. .+.+++.+++..+|+||++++++.+||.|||+++.+|+....
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~---~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y~~~~~ 298 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDA---CATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTV 298 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHh---cCCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999987 578999999999999999999999999999999999988544
No 4
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=2.1e-24 Score=143.56 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHH---HHHHHHHHHHHhcc
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILV---HQAVKELFLEQLRM 83 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~---~~~~~~~~~~~~~~ 83 (89)
.+|+||||++|+||||+||+++++++++.+ .+.+++.++++.+|+||++++++.+||.|+ |+++..++.....+
T Consensus 229 ~~PIvVHCsaGvGRtGtfcaidi~i~~l~~---~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~~~~~~~~ 305 (312)
T PHA02747 229 LCPIVVHCSDGVGKTGIFCAVDICLNQLVK---RKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFLSKIKAI 305 (312)
T ss_pred CCCEEEEecCCCcchhHHHHHHHHHHHHHh---cCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 489999999999999999999999999987 568999999999999999999999999999 99999888765544
Q ss_pred c
Q psy5452 84 I 84 (89)
Q Consensus 84 ~ 84 (89)
+
T Consensus 306 ~ 306 (312)
T PHA02747 306 D 306 (312)
T ss_pred c
Confidence 3
No 5
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=2.2e-24 Score=144.00 Aligned_cols=72 Identities=42% Similarity=0.617 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHh
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQL 81 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~ 81 (89)
.+|+||||++|+||||+||+++++++++.+ .+.+++.+++..+|+||++++++.+||.|||+++.+++....
T Consensus 247 ~~PIvVHCsaGvGRTGtfcaid~~l~~l~~---~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~l~~~~ 318 (323)
T PHA02746 247 LGPIVVHCSAGIGRAGTFCAIDNALEQLEK---EKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAIIEEA 318 (323)
T ss_pred CCCEEEEcCCCCCcchhHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999999999987 567999999999999999999999999999999999886543
No 6
>KOG0790|consensus
Probab=99.88 E-value=2.1e-23 Score=142.02 Aligned_cols=76 Identities=37% Similarity=0.566 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHh
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQL 81 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~ 81 (89)
..|||+||||+|+||||+|++++++++++.+..+..++|+..+++.+|+||.+++||..||.|+|.++..|+++--
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl~ 525 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETLQ 525 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999998777889999999999999999999999999999999999998644
No 7
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.85 E-value=6e-21 Score=108.03 Aligned_cols=67 Identities=46% Similarity=0.732 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVK 74 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~ 74 (89)
.++|++|||++|.||||+|+++++++.++... ....++.++++.+|++|++++++.+||.|+|.+++
T Consensus 38 ~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~--~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00404 38 SSGPVVVHCSAGVGRTGTFVALDILLQQLESE--TGEVDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred CCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 36899999999999999999999999988763 25689999999999999999999999999999875
No 8
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.85 E-value=6e-21 Score=108.03 Aligned_cols=67 Identities=46% Similarity=0.732 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVK 74 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~ 74 (89)
.++|++|||++|.||||+|+++++++.++... ....++.++++.+|++|++++++.+||.|+|.+++
T Consensus 38 ~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~--~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00012 38 SSGPVVVHCSAGVGRTGTFVALDILLQQLESE--TGEVDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred CCCCEEEEeCCCCChhhHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 36899999999999999999999999988763 25689999999999999999999999999999875
No 9
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-21 Score=126.43 Aligned_cols=74 Identities=38% Similarity=0.542 Sum_probs=60.5
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCC---CC--Cc-ccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGK---LN--KD-FSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLE 79 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~---~~--~~-~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~ 79 (89)
.++|++|||++|+||||+|++++.++.....-. .+ .+ -.+++++..+|+||..+||+..||.|+|+++.++..+
T Consensus 217 ~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~~~ 296 (302)
T COG5599 217 RTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELNKS 296 (302)
T ss_pred CCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999876543310 00 00 1367899999999999999999999999999987733
No 10
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.85 E-value=3.1e-21 Score=125.10 Aligned_cols=65 Identities=52% Similarity=0.830 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVK 74 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~ 74 (89)
.+|++|||++|+||||+|+++++++.++.. ...+++.++++.+|++|++++++.+||.|+|.+++
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~~~l~~---~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l~ 257 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILLQQLEA---GKEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAIL 257 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHHHHHHH---cCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 789999999999999999999999999887 45789999999999999999999999999999986
No 11
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.84 E-value=6.3e-21 Score=121.84 Aligned_cols=66 Identities=48% Similarity=0.738 Sum_probs=62.1
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVK 74 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~ 74 (89)
..+|++|||.+|.||||+|+++++++.++.. ...+++.++++.+|++|++++++.+||.|+|.+++
T Consensus 165 ~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~---~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l~ 230 (231)
T cd00047 165 GSGPIVVHCSAGVGRTGTFIAIDILLQRLEA---EGVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAIL 230 (231)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHHh---cCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 5789999999999999999999999999887 46799999999999999999999999999999986
No 12
>KOG0792|consensus
Probab=99.84 E-value=6.2e-21 Score=139.14 Aligned_cols=72 Identities=39% Similarity=0.629 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQ 80 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~ 80 (89)
.+.||||||++|+||||+++.+++++..++. +.++++.+++..||.||..+|||..||.|+|++++.++++.
T Consensus 1062 t~pPilvHCSAGiGRTGVlIl~e~~l~lle~---Ne~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~~l~~~ 1133 (1144)
T KOG0792|consen 1062 TNPPILVHCSAGIGRTGVLILMETALCLLEH---NEPVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILRVLKRG 1133 (1144)
T ss_pred CCCCeEEEccCCCCcceehHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHHHHHhc
Confidence 3669999999999999999999999999987 78899999999999999999999999999999999887754
No 13
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.84 E-value=1e-20 Score=120.16 Aligned_cols=68 Identities=40% Similarity=0.719 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKE 75 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~ 75 (89)
...+|++|||++|.||||+|++++++++++.+ .+.+++.++++.+|++|++++++.+||.|+|.+++|
T Consensus 168 ~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~---~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~~~~e 235 (235)
T PF00102_consen 168 DPNGPIVVHCSDGVGRSGTFCAIDILIEQLKK---EGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYMAVLE 235 (235)
T ss_dssp TTSSEEEEESSSSSHHHHHHHHHHHHHHHHHH---HSEECHHHHHHHHHTTSTTSSSSHHHHHHHHHHHHH
T ss_pred CCccceEeecccccccccccccchhhcccccc---ccchhhHHHHHHHHhhCCCccCCHHHHHHHHHHHhC
Confidence 46789999999999999999999999999988 456999999999999999999999999999999975
No 14
>KOG0791|consensus
Probab=99.82 E-value=1.5e-20 Score=125.31 Aligned_cols=74 Identities=39% Similarity=0.663 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHhc
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQLR 82 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~~ 82 (89)
..+|++|||++|+||||+|++++.++.++.. ...+++..++.++|.+|+.+++|.+||.|+|.++++.+..+..
T Consensus 286 ~~~p~iVhCSAGVgRTGTFiald~LLqq~~~---~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 286 SKGPTIVHCSAGVGRTGTFIALDRLLQQIDS---EETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred CCCceeEEeecccccccchHhHHHHHHHhcc---cccccHHHHHHHhhhccccccchHHHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999987 4678999999999999999999999999999999998886653
No 15
>KOG4228|consensus
Probab=99.82 E-value=6.1e-21 Score=139.78 Aligned_cols=75 Identities=40% Similarity=0.644 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHhc
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQLR 82 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~~ 82 (89)
+..||+||||++|+||||+|+++|.+++++.. ++.+|+.+.+..+|.||.+++|+.+||.|+|++++++....-.
T Consensus 728 ~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~---e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~T 802 (1087)
T KOG4228|consen 728 PDAGPIVVHCSAGVGRTGCFIVIDAMLDRLEC---EGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGDT 802 (1087)
T ss_pred cCCCCEEEECCCCCCCcceEEEeHHHHHHHHh---hCccceechhHHHHhccccccccHHHHHHHHHHHHHHHhcCCc
Confidence 46799999999999999999999999999987 6789999999999999999999999999999999998775443
No 16
>KOG0789|consensus
Probab=99.77 E-value=2.9e-18 Score=116.95 Aligned_cols=73 Identities=32% Similarity=0.479 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLE 79 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~ 79 (89)
+..+|++|||++|+||||+|++++.++..+..+ ....++...+..+|.||.+++++..||.|+|.++++|+..
T Consensus 297 ~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~--~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~~ 369 (415)
T KOG0789|consen 297 PKQEPIEVHCSAGAGRAGTLVLIEHALIELQGP--EGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIKK 369 (415)
T ss_pred CCCCCeEEECCCCCCccchHHHHHHHHHHHhcC--CCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 457899999999999999999999887777543 3456789999999999999999999999999999999987
No 17
>KOG4228|consensus
Probab=99.75 E-value=1.6e-18 Score=127.30 Aligned_cols=70 Identities=36% Similarity=0.591 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFL 78 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~ 78 (89)
..+|++|||++|.||||+||++.+++++++. ++.+|++++++.+|.+|++++++.+||.|||+++++|+.
T Consensus 1017 ~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~---e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y~~ 1086 (1087)
T KOG4228|consen 1017 ADGPIIVHCLNGVGRTGTFCAISILLERMRK---EGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVALEYLG 1086 (1087)
T ss_pred CCCCEEEEEcCCCcceeehHHHHHHHHHHhh---cCceeeehhhhhhhhcCccccCcHHHHHHHHHHHHHhhc
Confidence 3899999999999999999999999999988 678999999999999999999999999999999999874
No 18
>KOG0793|consensus
Probab=99.74 E-value=2.8e-18 Score=121.93 Aligned_cols=77 Identities=36% Similarity=0.588 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHhccc
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQLRMI 84 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~~~~ 84 (89)
.+.||+|||++|.||||++|++|+.+..+.+| .+++|+..+++.+|.||+++|.|.+||.|.+.++.+-+..-++.+
T Consensus 926 RScpIiVH~sdGaGRTG~YiliDmvl~Rm~kG--akeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEVnaiLKal 1002 (1004)
T KOG0793|consen 926 RSCPIIVHCSDGAGRTGTYILIDMVLNRMAKG--AKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEVNAILKAL 1002 (1004)
T ss_pred CCCceEEEccCCCCccceeeeHHHHHHHHhcc--chhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999998 688999999999999999999999999999999998877766654
No 19
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.73 E-value=1.5e-17 Score=115.33 Aligned_cols=64 Identities=25% Similarity=0.462 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcch-hhCCHHHHHHHHHHHHHHHH
Q psy5452 8 LPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIA-MVQTKEQYILVHQAVKELFL 78 (89)
Q Consensus 8 ~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~-~v~~~~qy~f~~~~~~~~~~ 78 (89)
++.+|||++|+||||+||+++++ .+ ...+++.+++..+|.+|++ |||+.+||.++++.-...+.
T Consensus 467 ~~PVVHCSAGVGRTGTFIAi~ll----k~---~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~~ 531 (535)
T PRK15375 467 HLPMIHCLGGVGRTGTMAAALVL----KD---NPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLLM 531 (535)
T ss_pred CCceEEcCCCCchHHHHHHHHHH----hc---cccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhh
Confidence 33489999999999999999873 22 3457999999999999999 99999999999998776654
No 20
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.63 E-value=2e-15 Score=92.89 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=52.4
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVK 74 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~ 74 (89)
.+++|++|||.+|+||||++++++++. ...+++.+++..+|++|++++ +..|+.|+.+...
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~--------~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVE--------YGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKP 156 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHH
Confidence 468899999999999999999998652 234689999999999999998 5899999987664
No 21
>KOG1720|consensus
Probab=99.50 E-value=9.4e-14 Score=87.34 Aligned_cols=64 Identities=27% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFL 78 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~ 78 (89)
.+.+.|||.+|.||||+++|+++++. ..++..+++..+|..||++|++++|+..+++...-+..
T Consensus 147 ~g~iaVHCkaGlGRTG~liAc~lmy~--------~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~~~ 210 (225)
T KOG1720|consen 147 GGKIAVHCKAGLGRTGTLIACYLMYE--------YGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLWLA 210 (225)
T ss_pred cCeEEEEeccCCCchhHHHHHHHHHH--------hCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhh
Confidence 58899999999999999999999874 24678899999999999999999999988887663333
No 22
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.50 E-value=1.1e-13 Score=88.91 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=50.9
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKE 75 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~ 75 (89)
.+++|+|||.+|.||||++++++++- . .++..+++..+|+.|++++ +..|+.|+.+.-..
T Consensus 169 ~g~~VaVHC~AGlGRTGtl~AayLI~----~-----GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~ 228 (241)
T PTZ00393 169 NNRAVAVHCVAGLGRAPVLASIVLIE----F-----GMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKK 228 (241)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH----c-----CCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Confidence 56799999999999999999998762 2 2588999999999999998 57899998876553
No 23
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.37 E-value=3.8e-12 Score=75.37 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVH 70 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~ 70 (89)
.++|++|||.+|.||||++++.+++.. ..++..++++.+|+.|+....+..+...+.
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~--------~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~ 136 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKT--------LGLSLREAYEFVKSRRPIISPNAGFMRQLK 136 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHH--------cCCCHHHHHHHHHHHCCccCCCHHHHHHHH
Confidence 467999999999999999999877642 246889999999999998888877665543
No 24
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.37 E-value=3.8e-12 Score=75.57 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=48.4
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVH 70 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~ 70 (89)
..++||+|||.+|.||||++++++++. ...+++.+++..+|+.|+....+..+...+.
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~--------~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~ 133 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMK--------YRNLSLNDAYDFVKDRRPIISPNFGFLRQLI 133 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHH--------HhCCCHHHHHHHHHHHCCccCCCHhHHHHHH
Confidence 456899999999999999999988764 2346899999999999999888877766554
No 25
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.28 E-value=8.9e-12 Score=73.46 Aligned_cols=59 Identities=27% Similarity=0.324 Sum_probs=49.1
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQ 71 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~ 71 (89)
.++++|+|||..|.||||++++++++.. ..+++.++++.+++.||....+..++..++.
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~--------~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 129 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKK--------NGMSLEEAIEYVRSRRPQINPNPSFIRQLYE 129 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHH--------HTSSHHHHHHHHHHHSTTSTHHHHHHHHHHH
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHH--------cCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 4678999999999999999999988742 2358899999999999998888777766554
No 26
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.22 E-value=5e-11 Score=74.17 Aligned_cols=63 Identities=24% Similarity=0.192 Sum_probs=49.6
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKE 75 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~ 75 (89)
..+.|+|||..|+||||++++.++++.+ +-....+.+.-+|..|++.+.+..|+.|..+....
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~-------~~~~~~~~i~~~~~~r~~~v~~~~q~~~~~e~~~~ 166 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYG-------GLSLADEAIAVKRRRRPGAVVTEIQHLFELEQELF 166 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHc-------CCCCHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 3459999999999999999998887542 12355677777888888889999999888877653
No 27
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.15 E-value=2.3e-12 Score=78.90 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=24.0
Q ss_pred cCCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcC
Q psy5452 4 ASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAG 37 (89)
Q Consensus 4 ~~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~ 37 (89)
+++ +|+++||++|++|||+++++.+.+.++..+
T Consensus 122 ~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~ 154 (164)
T PF13350_consen 122 DAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDE 154 (164)
T ss_dssp -TT---EEEE-SSSSSHHHHHHHHHHHHTT--HH
T ss_pred cCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHH
Confidence 344 799999999999999999999988887653
No 28
>PRK12361 hypothetical protein; Provisional
Probab=98.89 E-value=6e-09 Score=74.10 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQA 72 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~ 72 (89)
.+++++|||..|.|||+++++++++... ...++.++++.+|+.||.+..+..|...+.+.
T Consensus 174 ~~~~VlVHC~~G~sRSa~vv~ayLm~~~-------~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~ 233 (547)
T PRK12361 174 ANKSVVVHCALGRGRSVLVLAAYLLCKD-------PDLTVEEVLQQIKQIRKTARLNKRQLRALEKM 233 (547)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999876321 24688999999999999999999888765543
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.69 E-value=3.2e-08 Score=60.87 Aligned_cols=46 Identities=30% Similarity=0.481 Sum_probs=32.9
Q ss_pred ccCCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcc
Q psy5452 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRI 57 (89)
Q Consensus 3 ~~~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~ 57 (89)
.++.+.|++|||..|.+|||++++++-- + +.+++..++.+.|..-.
T Consensus 87 ld~~n~PvLiHC~~G~~rTG~vvg~lRk---~------Q~W~~~~i~~Ey~~f~~ 132 (164)
T PF03162_consen 87 LDPRNYPVLIHCNHGKDRTGLVVGCLRK---L------QGWSLSSIFDEYRRFAG 132 (164)
T ss_dssp H-GGG-SEEEE-SSSSSHHHHHHHHHHH---H------TTB-HHHHHHHHHHHHG
T ss_pred hCCCCCCEEEEeCCCCcchhhHHHHHHH---H------cCCCHHHHHHHHHHhcC
Confidence 3567789999999999999999997642 3 35788888888875443
No 30
>KOG2836|consensus
Probab=98.63 E-value=1.2e-07 Score=56.59 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=45.8
Q ss_pred ccCCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHH
Q psy5452 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVH 70 (89)
Q Consensus 3 ~~~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~ 70 (89)
++.+...+.|||-+|.||+.++.++.++-.++ ...++++.+|++|.+++.+ .|..|+-
T Consensus 93 ~e~p~~cvavhcvaglgrapvlvalalie~gm---------kyedave~ir~krrga~n~-kql~~le 150 (173)
T KOG2836|consen 93 REEPGCCVAVHCVAGLGRAPVLVALALIEAGM---------KYEDAVEMIRQKRRGAINS-KQLLYLE 150 (173)
T ss_pred hhCCCCeEEEEeecccCcchHHHHHHHHHccc---------cHHHHHHHHHHHhhccccH-HHHHHHH
Confidence 45667789999999999999999988764443 5578999999999998654 4655553
No 31
>KOG1719|consensus
Probab=98.54 E-value=4.5e-07 Score=55.21 Aligned_cols=59 Identities=27% Similarity=0.364 Sum_probs=49.4
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQ 71 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~ 71 (89)
+-...+-|||.+|.+|+.++++++++- .+.++...++..+|+.|+...--+.|+.-+.+
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq--------~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~e 165 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQ--------HKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKE 165 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhh--------hcCCCHHHHHHHHHhcCcceeecHHHHHHHHH
Confidence 345678999999999999999999863 45688999999999999999888888754433
No 32
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=98.49 E-value=1.8e-07 Score=57.54 Aligned_cols=26 Identities=42% Similarity=0.618 Sum_probs=20.2
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVW 31 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~ 31 (89)
....++|||.+|.||||+++|+.++.
T Consensus 132 ~g~~V~vHC~GGlGRtGlvAAcLLl~ 157 (168)
T PF05706_consen 132 NGRKVLVHCRGGLGRTGLVAACLLLE 157 (168)
T ss_dssp TT--EEEE-SSSSSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999988763
No 33
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.36 E-value=7.4e-07 Score=53.14 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhc
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQR 56 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R 56 (89)
.++|+++||++|. |||++.++.+...+ ++..+++...+...
T Consensus 85 ~~~pvL~HC~sG~-Rt~~l~al~~~~~g---------~~~~~i~~~~~~~G 125 (135)
T TIGR01244 85 AEGPVLAYCRSGT-RSSLLWGFRQAAEG---------VPVEEIVRRAQAAG 125 (135)
T ss_pred CCCCEEEEcCCCh-HHHHHHHHHHHHcC---------CCHHHHHHHHHHcC
Confidence 4699999999999 99998887665322 46667777666544
No 34
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.35 E-value=2.9e-07 Score=60.01 Aligned_cols=31 Identities=39% Similarity=0.498 Sum_probs=26.4
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLR 35 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~ 35 (89)
..++|+++||+.|++|||++++++..+.+..
T Consensus 134 ~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~ 164 (249)
T COG2365 134 AENGPVLIHCTAGKDRTGLVAALYRKLVGGS 164 (249)
T ss_pred cccCCEEEecCCCCcchHHHHHHHHHHhCCc
Confidence 3469999999999999999999988765543
No 35
>KOG2283|consensus
Probab=98.13 E-value=1.5e-06 Score=60.64 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=43.3
Q ss_pred ccCCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhc---c--hhhCCHHHHHHHHHH
Q psy5452 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQR---I--AMVQTKEQYILVHQA 72 (89)
Q Consensus 3 ~~~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R---~--~~v~~~~qy~f~~~~ 72 (89)
...+..-++|||.+|+||||++++++++..++.. ...+++...-..| . +.+..+.|-+|++..
T Consensus 103 ~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~-------ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~ 170 (434)
T KOG2283|consen 103 SEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISA-------TAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYF 170 (434)
T ss_pred hcCccceEEEEccCCCcceEEEEeHHHHhhhhcC-------CHHHHHHHHhhhhccccccCCccCchhhHHHHHH
Confidence 4566778999999999999999999998888765 2234444444445 3 335556666665544
No 36
>KOG1718|consensus
Probab=98.11 E-value=6.9e-06 Score=50.79 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=39.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCC
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~ 62 (89)
..|.++|||-+|++|+..+|.++++- ....++.++-..++..||-.=.+
T Consensus 93 ~gG~TLvHC~AGVSRSAsLClAYLmK--------~~~msLreAy~~vKa~RpiIRPN 141 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSASLCLAYLMK--------YHCMSLREAYHWVKARRPIIRPN 141 (198)
T ss_pred cCCcEEEEEccccchhHHHHHHHHHH--------HccchHHHHHHHHHhhCceeCCC
Confidence 56899999999999999999988863 23468888888888888655444
No 37
>KOG1716|consensus
Probab=98.06 E-value=1.1e-05 Score=53.57 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTK 63 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~ 63 (89)
...+-++|||.+|++|+.+++.++++. ...+++.++...++..|+....+.
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~--------~~~~~l~~A~~~vk~~R~~i~PN~ 203 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMK--------YEGLSLEDAYELVKSRRPIISPNF 203 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHH--------HcCCCHHHHHHHHHHhCCccCCCH
Confidence 357889999999999999999998874 345789999999999998875543
No 38
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.86 E-value=1.1e-05 Score=48.82 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=21.0
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVW 31 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~ 31 (89)
+++..+++||.+|.|||.+|.++..++
T Consensus 122 p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 122 PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 557789999999999999999887654
No 39
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.62 E-value=0.00015 Score=44.25 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=39.2
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQ 65 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~q 65 (89)
+...|++|||..|++||-..+....+ -+ ..+.+-.+..+++|..+|.+-.|+.-
T Consensus 91 p~~apllIHC~aGISRStA~A~i~a~--al-----a~~~de~ela~~Lra~sp~atPN~Rl 144 (172)
T COG5350 91 PRFAPLLIHCYAGISRSTAAALIAAL--AL-----APDMDETELAERLRALSPYATPNPRL 144 (172)
T ss_pred ccccceeeeeccccccchHHHHHHHH--hh-----ccccChHHHHHHHHhcCcccCCChhH
Confidence 46689999999999999865443221 12 34567788888999888887777643
No 40
>KOG1717|consensus
Probab=97.61 E-value=0.00013 Score=48.21 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=37.1
Q ss_pred cCCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCC
Q psy5452 4 ASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62 (89)
Q Consensus 4 ~~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~ 62 (89)
..++.-++|||-+|++|+-++++.+++-. -..++.++...+...+.+.-.+
T Consensus 248 rsk~cgvLVHClaGISRSvTvtvaYLMqk--------l~lslndAyd~Vk~kksnisPN 298 (343)
T KOG1717|consen 248 RSKNCGVLVHCLAGISRSVTVTVAYLMQK--------LNLSLNDAYDFVKHKKSNISPN 298 (343)
T ss_pred hccCCcEEEeeeccccchhHHHHHHHHHH--------hccchhhHHHHHHHhccCCCCC
Confidence 34667899999999999999999998632 2346666666666666555443
No 41
>PLN02727 NAD kinase
Probab=97.56 E-value=8.3e-05 Score=55.94 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.6
Q ss_pred cCCCCCeEEEcCCCCchhHHHHHHHHHH
Q psy5452 4 ASETLPVLVHCSAGCGRTGTICAIDYVW 31 (89)
Q Consensus 4 ~~~~~pvvVHC~~G~gRtg~~~~~~~~~ 31 (89)
+..++|+++||..|.+|||++.++++.+
T Consensus 338 ~slpkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 338 DSSKKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred hhcCCCEEEECCCCCchHHHHHHHHHHH
Confidence 3457999999999999999999998863
No 42
>KOG1572|consensus
Probab=97.30 E-value=0.00017 Score=46.70 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.1
Q ss_pred ccCCCCCeEEEcCCCCchhHHHHHHHH
Q psy5452 3 QASETLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 3 ~~~~~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
-...+.|+++||..|.-|||+++++.-
T Consensus 144 ld~~N~P~Lihc~rGkhRtg~lVgclR 170 (249)
T KOG1572|consen 144 LDKRNYPILIHCKRGKHRTGCLVGCLR 170 (249)
T ss_pred hcccCCceEEecCCCCcchhhhHHHHH
Confidence 345788999999999999999998754
No 43
>KOG4471|consensus
Probab=97.29 E-value=0.00026 Score=51.11 Aligned_cols=27 Identities=41% Similarity=0.696 Sum_probs=23.2
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVW 31 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~ 31 (89)
.++.||+||||+|=+||..+.++.+++
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHHHHH
Confidence 567899999999999999998876643
No 44
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.79 E-value=0.0016 Score=37.70 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=17.2
Q ss_pred CCCCeEEEcCCCCchhHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
..+|+++||..|. |++.+.++.
T Consensus 85 ~~~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 85 LPKPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp TTTSEEEE-SCSH-HHHHHHHHH
T ss_pred CCCCEEEECCCCh-hHHHHHHHH
Confidence 4689999999998 888877654
No 45
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=96.46 E-value=0.004 Score=42.71 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=21.2
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVW 31 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~ 31 (89)
..+.+|+|||++|-+||..++++..++
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHHH
Confidence 356799999999999999998876654
No 46
>KOG2386|consensus
Probab=96.43 E-value=0.0018 Score=44.87 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYI 67 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~ 67 (89)
.+..=|.|||+.|..|||-+++.+++. ...++..++++.+-..|+..+.-.+-+.
T Consensus 122 ~~~~LI~vhcthG~NrtgyLI~~yL~~--------~~~~s~~~aik~f~~~r~~gi~k~dyi~ 176 (393)
T KOG2386|consen 122 LDDELIGVHCTHGLNRTGYLICAYLAD--------VGGYSSSEAIKRFADARPPGIEKQDYID 176 (393)
T ss_pred CCCCEEEEeCCCcccccceeeeeeeee--------ccCccHHHHHHHHHHhCCCccCchHHHH
Confidence 355678999999999999888776652 3347889999999999988766554443
No 47
>KOG1089|consensus
Probab=96.08 E-value=0.0069 Score=43.81 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=21.5
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYV 30 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~ 30 (89)
...++||||++|-+||..++++..+
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~SLaQl 367 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSSLAQL 367 (573)
T ss_pred CCCeEEEEccCCcchhHHHHHHHHH
Confidence 4479999999999999999987654
No 48
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=90.82 E-value=0.34 Score=26.80 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=15.8
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
+.+.|++|+|..| .|+...+.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a~~ 79 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKASA 79 (101)
T ss_pred cCCCEEEEECCCc-hhHHHHHH
Confidence 4667999999987 57776543
No 49
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=90.44 E-value=0.44 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=14.7
Q ss_pred CCCCCeEEEcCCCCchhHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~ 25 (89)
+.+.|++|+|..|. |+...+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa 78 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA 78 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH
Confidence 35679999999885 765443
No 50
>PLN02160 thiosulfate sulfurtransferase
Probab=88.69 E-value=0.68 Score=27.45 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.1
Q ss_pred CCCCCeEEEcCCCCchhHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~ 25 (89)
+...|++++|..| .|+...+
T Consensus 79 ~~~~~IivyC~sG-~RS~~Aa 98 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKAT 98 (136)
T ss_pred CCCCcEEEECCCc-HHHHHHH
Confidence 3567999999988 5777543
No 51
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=87.70 E-value=1.1 Score=25.17 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=13.2
Q ss_pred CCCCeEEEcCCCCchhHH
Q psy5452 6 ETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~ 23 (89)
.+.|++|+|..|. |+..
T Consensus 65 ~~~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII 81 (109)
T ss_pred CCCeEEEECCCCc-hHHH
Confidence 4679999999886 6644
No 52
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=86.54 E-value=1 Score=32.18 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYVW 31 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~~ 31 (89)
..+.+++|+|.+|.+.+.-++.+.++.
T Consensus 374 ~~~~~iLV~C~sGkDlSVgVaLaILc~ 400 (451)
T PF04179_consen 374 DPGKPILVCCDSGKDLSVGVALAILCK 400 (451)
T ss_pred cCCCcEEEEcCCcchHHHHHHHHHHHH
Confidence 357899999999999987777666654
No 53
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=86.38 E-value=1 Score=24.90 Aligned_cols=19 Identities=26% Similarity=0.697 Sum_probs=14.5
Q ss_pred CCCCeEEEcCCCCchhHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~ 25 (89)
.+.|++|+|..|. |++..+
T Consensus 60 ~~~~ivv~C~~G~-rS~~aa 78 (110)
T COG0607 60 DDDPIVVYCASGV-RSAAAA 78 (110)
T ss_pred CCCeEEEEeCCCC-ChHHHH
Confidence 5789999999887 665433
No 54
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=82.77 E-value=1.4 Score=25.12 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=15.1
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
..+.|++++|..| ++....++..
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~ 99 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWT 99 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHH
Confidence 3577999999998 4444444433
No 55
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.42 E-value=1.6 Score=25.88 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=11.8
Q ss_pred CCCCeEEEcCCCCc
Q psy5452 6 ETLPVLVHCSAGCG 19 (89)
Q Consensus 6 ~~~pvvVHC~~G~g 19 (89)
..+|++.||.+|.-
T Consensus 86 aegPVlayCrsGtR 99 (130)
T COG3453 86 AEGPVLAYCRSGTR 99 (130)
T ss_pred hCCCEEeeecCCch
Confidence 56899999998873
No 56
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=80.50 E-value=2.5 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=15.3
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
+.+.|+++||..+-.|+...+.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~ 87 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMAR 87 (121)
T ss_pred CCCCEEEEECCCccccHHHHHH
Confidence 4678999999744467666444
No 57
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=79.36 E-value=3.2 Score=22.54 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=13.8
Q ss_pred CCCCCeEEEcCCCCchhHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~ 24 (89)
++..|++++|..| +|+...
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~ 72 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA 72 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH
Confidence 4567999999866 466553
No 58
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=79.16 E-value=2.6 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=14.9
Q ss_pred CCCCCeEEEcCCCCchhHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~ 25 (89)
+.+.|++++|..|. |+...+
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa 89 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV 89 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH
Confidence 45789999999884 766433
No 59
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=78.97 E-value=3.4 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=12.6
Q ss_pred CCCCCeEEEcCCCCchhH
Q psy5452 5 SETLPVLVHCSAGCGRTG 22 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg 22 (89)
+...|++|+|..| .|+.
T Consensus 59 ~~~~~ivv~c~~g-~~s~ 75 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA 75 (103)
T ss_pred CCCCeEEEEcCCC-CcHH
Confidence 3567999999876 4554
No 60
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=77.79 E-value=3.6 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=13.3
Q ss_pred CCCCCeEEEcCCCCchhHH
Q psy5452 5 SETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~ 23 (89)
+++.|++++|..|. |+..
T Consensus 64 ~~~~~ivv~c~~g~-~s~~ 81 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKA 81 (106)
T ss_pred CCCCeEEEECCCcH-HHHH
Confidence 35679999999875 5544
No 61
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=77.28 E-value=3.2 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=16.5
Q ss_pred CCCCCeEEEcCCCCchhHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~ 25 (89)
..+.|+|+.|..|..|+...+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa 134 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAA 134 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHH
Confidence 466899999999887777643
No 62
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=75.54 E-value=5.2 Score=22.66 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=13.7
Q ss_pred CCCCeEEEcCCCCchhHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~ 25 (89)
.+.|++++|.+| .|+...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 456899999987 5666543
No 63
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=75.29 E-value=4.9 Score=22.90 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=14.5
Q ss_pred CCCCCeEEEcCCCCchhHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~ 25 (89)
+...|++++|..| .|+...+
T Consensus 62 ~~~~~ivv~C~~G-~rs~~aa 81 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAAA 81 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHHH
Confidence 3567899999988 4666543
No 64
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=74.83 E-value=4.5 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=14.0
Q ss_pred CCCCeEEEcCCCCchhHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~ 26 (89)
++.|+++.|..|...+...++
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa 69 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAA 69 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHH
Confidence 467999999988644333333
No 65
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=73.62 E-value=4 Score=22.41 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=14.2
Q ss_pred CCCeEEEcCCCCchhHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~ 26 (89)
+.|++++|..|. |++.++.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~ 83 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA 83 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH
Confidence 679999999876 6665444
No 66
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=73.36 E-value=3 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=15.0
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
+..+.+++||| |.+-+|+|.-
T Consensus 89 ~rpg~iv~HcS-ga~~~~il~~ 109 (289)
T COG5495 89 NRPGTIVAHCS-GANGSGILAP 109 (289)
T ss_pred cCCCeEEEEcc-CCCchhhhhh
Confidence 35678999999 5666676654
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=73.23 E-value=6 Score=26.90 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.5
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
.++.|++++|.+|. |+...+.
T Consensus 169 ~kdk~IvvyC~~G~-Rs~~aa~ 189 (314)
T PRK00142 169 LKDKKVVMYCTGGI-RCEKASA 189 (314)
T ss_pred CCcCeEEEECCCCc-HHHHHHH
Confidence 35679999999875 7766544
No 68
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=72.84 E-value=5.7 Score=22.30 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=14.2
Q ss_pred CCCCeEEEcCCCCchhHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~ 25 (89)
.+.|+++.|..|. |+...+
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH
Confidence 4568999999884 776654
No 69
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=72.49 E-value=7.1 Score=21.18 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=13.1
Q ss_pred CCCCCeEEEcCCCCchhHH
Q psy5452 5 SETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~ 23 (89)
+++.|+++.|..|. |+..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 45679999999874 4443
No 70
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=72.33 E-value=6.6 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=13.4
Q ss_pred CCCCeEEEcCCCCchhHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~ 24 (89)
++.|+++.|..| .|+...
T Consensus 57 ~~~~vv~~c~~g-~rs~~~ 74 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV 74 (101)
T ss_pred CCCeEEEEeCCC-chHHHH
Confidence 467999999987 466443
No 71
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=71.70 E-value=5.9 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=14.2
Q ss_pred CCCCeEEEcCCCCchhHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~ 25 (89)
...+++++|..|-.|+...+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCCEEEEECCCCCcccHHHH
Confidence 45689999998666765443
No 72
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=71.27 E-value=7.6 Score=21.71 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=13.6
Q ss_pred CCCCCeEEEcCCCCc-hhHH
Q psy5452 5 SETLPVLVHCSAGCG-RTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~g-Rtg~ 23 (89)
+++.|+++.|..|.. |+..
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~ 81 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATK 81 (110)
T ss_pred CCCCeEEEEECCCCCchHHH
Confidence 456899999998853 4443
No 73
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=69.81 E-value=9.2 Score=20.44 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=12.7
Q ss_pred CCCCCeEEEcCCCCchhHH
Q psy5452 5 SETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~ 23 (89)
+++.|++|+|..|. |+..
T Consensus 54 ~~~~~ivv~c~~g~-~s~~ 71 (96)
T cd01444 54 DRDRPVVVYCYHGN-SSAQ 71 (96)
T ss_pred CCCCCEEEEeCCCC-hHHH
Confidence 46779999999553 4443
No 74
>PRK01415 hypothetical protein; Validated
Probab=67.80 E-value=8.5 Score=25.41 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=15.6
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
..+.|+++.|++|. |+...+.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~kAa~ 189 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEKSTS 189 (247)
T ss_pred cCCCeEEEECCCCh-HHHHHHH
Confidence 46679999998884 7765544
No 75
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=67.11 E-value=14 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=16.9
Q ss_pred CCCeEEEcCCCCchhHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
+-|+|.|.++|++.-..--++.
T Consensus 203 ~iPLVLHGgSG~~~e~~~~ai~ 224 (285)
T PRK07709 203 GVPLVLHGGTGIPTADIEKAIS 224 (285)
T ss_pred CCCEEEeCCCCCCHHHHHHHHH
Confidence 5799999999999766544443
No 76
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=67.10 E-value=9.3 Score=22.07 Aligned_cols=21 Identities=19% Similarity=0.437 Sum_probs=15.1
Q ss_pred CCCCCeEEEcCCCCchhHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~ 25 (89)
+++.|++|.|..|-.|+...+
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH
Confidence 356799999976556777544
No 77
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=66.98 E-value=7.9 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=13.0
Q ss_pred CCCCeEEEcCCCCchhHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~ 24 (89)
.+.|++++|..+-.|+...
T Consensus 61 ~~~~iv~yC~~~~~r~~~a 79 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSA 79 (113)
T ss_pred CCCeEEEEeecCCcchHHH
Confidence 4579999998544555543
No 78
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=66.37 E-value=2.7 Score=30.56 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.9
Q ss_pred EEEcCCCCchhHHHHH
Q psy5452 11 LVHCSAGCGRTGTICA 26 (89)
Q Consensus 11 vVHC~~G~gRtg~~~~ 26 (89)
...|.+|++|||++-+
T Consensus 460 ~wNCkSGKDRTGmmD~ 475 (564)
T PRK15378 460 AWNCKSGKDRTGMMDS 475 (564)
T ss_pred eeccCCCCccccchHH
Confidence 6789999999999665
No 79
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=66.27 E-value=15 Score=24.87 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=37.1
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHH-----HHHHHHh---cchhhCCHHHHHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTL-----VREMRKQ---RIAMVQTKEQYILVHQAVKELFL 78 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~r~~---R~~~v~~~~qy~f~~~~~~~~~~ 78 (89)
+-|+|.|.++|.+..-.--++...+ ..+++... ...+|+. .+..+.-..-+....+.+.+.++
T Consensus 203 ~vPLVLHGgSG~~~e~~~~ai~~GI---------~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~ 273 (286)
T PRK08610 203 GLPLVLHGGTGIPTKDIQKAIPFGT---------AKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVK 273 (286)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHCCC---------eEEEeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 5699999999999766544443322 22333222 2223321 22222223444566666777777
Q ss_pred HHhcccc
Q psy5452 79 EQLRMID 85 (89)
Q Consensus 79 ~~~~~~~ 85 (89)
.+++++.
T Consensus 274 ~~i~~fg 280 (286)
T PRK08610 274 GKIKEFG 280 (286)
T ss_pred HHHHHhC
Confidence 6666553
No 80
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=64.75 E-value=2.1 Score=31.21 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=0.0
Q ss_pred CCCeEEEcCCCCchhHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~ 26 (89)
......-|.+|++|||++-+
T Consensus 453 Gavp~~NCKSGKDRTG~lD~ 472 (559)
T PF05925_consen 453 GAVPCWNCKSGKDRTGMLDA 472 (559)
T ss_dssp --------------------
T ss_pred CCeeeccCccCCccccccHH
Confidence 35677899999999998554
No 81
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=64.68 E-value=4.6 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=7.7
Q ss_pred CCCCeEEEcCCCCc
Q psy5452 6 ETLPVLVHCSAGCG 19 (89)
Q Consensus 6 ~~~pvvVHC~~G~g 19 (89)
..+.++||||...+
T Consensus 95 ~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 95 RPGQIVVHTSGALG 108 (127)
T ss_dssp -TT-EEEES-SS--
T ss_pred CCCcEEEECCCCCh
Confidence 46789999996554
No 82
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=64.46 E-value=9.1 Score=21.42 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=13.0
Q ss_pred CCCCeEEEcCCCCchhHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~ 24 (89)
++.|+++.|..|. |+...
T Consensus 77 ~~~~iv~yc~~g~-~s~~~ 94 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL 94 (118)
T ss_pred CCCCEEEECCcHH-HHHHH
Confidence 5679999998863 55543
No 83
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=63.90 E-value=17 Score=24.49 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=16.3
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
.-+-|+|+|.++|.+---+--+
T Consensus 197 ~~~vPLVlHGgSG~~~e~~~~a 218 (283)
T PRK07998 197 VSPVPLVIHGGSGIPPEILRSF 218 (283)
T ss_pred hCCCCEEEeCCCCCCHHHHHHH
Confidence 3467999999999987654333
No 84
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=62.98 E-value=12 Score=25.29 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=36.4
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHH-----HHHHH---hcchhhCCHHHHHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLV-----REMRK---QRIAMVQTKEQYILVHQAVKELFL 78 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~r~---~R~~~v~~~~qy~f~~~~~~~~~~ 78 (89)
+-|+|.|.++|.+....--++... + .++++...+ ..+|+ ..+....-..-.....+.+.+.++
T Consensus 206 ~vPLVlHGgSG~~~e~~~~ai~~G---i------~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~ 276 (288)
T TIGR00167 206 NLPLVLHGGSGIPDEEIKKAISLG---V------VKVNIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVL 276 (288)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHcC---C------eEEEcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHH
Confidence 569999999999976654443332 2 223332221 12222 122222223344556666666666
Q ss_pred HHhcccc
Q psy5452 79 EQLRMID 85 (89)
Q Consensus 79 ~~~~~~~ 85 (89)
.+++++-
T Consensus 277 ~~i~~~g 283 (288)
T TIGR00167 277 EKIKLFG 283 (288)
T ss_pred HHHHHhC
Confidence 6666543
No 85
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=61.83 E-value=12 Score=25.98 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=13.2
Q ss_pred CCCeEEEcCCCCchhHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTIC 25 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~ 25 (89)
+.|++|+|..|. |+...+
T Consensus 332 ~~~Ivv~C~sG~-RS~~Aa 349 (370)
T PRK05600 332 GDNVVVYCASGI-RSADFI 349 (370)
T ss_pred CCcEEEECCCCh-hHHHHH
Confidence 349999999984 666543
No 86
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=59.64 E-value=31 Score=23.43 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHHHhccc
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQLRMI 84 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~~~~ 84 (89)
+-|+|.|-++|+.-.-+--++.+.+..+.-.. .-.+.+...+++.-...+...+-..-+.-..+++.+.+..+++..
T Consensus 204 ~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~T-d~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~f 280 (286)
T COG0191 204 SLPLVLHGGSGIPDEEIREAIKLGVAKVNIDT-DLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEF 280 (286)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHhCceEEeeCc-HHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999988777666665443332110 111223334443333334332222333445555556666655543
No 87
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=59.50 E-value=12 Score=19.93 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=10.8
Q ss_pred eEEEcCCCCchhHH
Q psy5452 10 VLVHCSAGCGRTGT 23 (89)
Q Consensus 10 vvVHC~~G~gRtg~ 23 (89)
+++-|.+|.|=|-+
T Consensus 2 IlvvC~~Gi~TS~~ 15 (90)
T PF02302_consen 2 ILVVCGSGIGTSLM 15 (90)
T ss_dssp EEEEESSSSHHHHH
T ss_pred EEEECCChHHHHHH
Confidence 78999999984433
No 88
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=59.17 E-value=13 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=17.2
Q ss_pred CCCCeEEEcCCCCchhHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~ 27 (89)
++.|++|+|..|-.|++.++.+
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~ 108 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQW 108 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHH
Confidence 5779999997666788886543
No 89
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=58.18 E-value=19 Score=18.54 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=13.1
Q ss_pred CCCCCeEEEcCCCCchhHH
Q psy5452 5 SETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~ 23 (89)
+...+++++|..|. |+..
T Consensus 48 ~~~~~vv~~c~~~~-~a~~ 65 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSAR 65 (89)
T ss_pred CCCCeEEEEeCCCc-hHHH
Confidence 46789999999863 4443
No 90
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=57.50 E-value=11 Score=20.97 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=36.6
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKD---FSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLE 79 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~~ 79 (89)
...+++-|.+|.+ |++++ .-+-+.+++..++-+ .++.+.-... .....+-...|..|..+-+.+....
T Consensus 3 ~~~ILl~C~~G~s-SS~l~--~k~~~~~~~~gi~~~v~a~~~~~~~~~~--~~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV--NKMNKAAEEYGVPVKIAAGSYGAAGEKL--DDADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchh-HHHHH--HHHHHHHHHCCCcEEEEEecHHHHHhhc--CCCCEEEECchHHHHHHHHHHHhhh
Confidence 3468999999998 66543 333334443222111 1233322111 2234555667888877777766543
No 91
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=57.33 E-value=21 Score=22.46 Aligned_cols=25 Identities=16% Similarity=-0.071 Sum_probs=19.7
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
..+|=+.|+|.+|+|.|-......+
T Consensus 19 ~~~Gli~VYtGdGKGKTTAAlGlal 43 (178)
T PRK07414 19 TIEGLVQVFTSSQRNFFTSVMAQAL 43 (178)
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHH
Confidence 3567789999999999987666544
No 92
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=56.28 E-value=27 Score=23.56 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=36.2
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHH-----HHHHH---hcchhhCCHHHHHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLV-----REMRK---QRIAMVQTKEQYILVHQAVKELFL 78 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~r~---~R~~~v~~~~qy~f~~~~~~~~~~ 78 (89)
+-|+|.|-++|.+--..--++...+ ..+++...+ ..+++ ..+.......-.....+.+.+.++
T Consensus 202 ~iPLVlHGgSG~~~e~~~kai~~Gi---------~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~ 272 (284)
T PRK12737 202 SIPLVLHGASGVPDEDVKKAISLGI---------CKVNVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVR 272 (284)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHCCC---------eEEEeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHH
Confidence 4699999999998766544443322 222322211 12222 222222223334555666667777
Q ss_pred HHhcccc
Q psy5452 79 EQLRMID 85 (89)
Q Consensus 79 ~~~~~~~ 85 (89)
.+++++-
T Consensus 273 ~~i~~~g 279 (284)
T PRK12737 273 EKIKVCG 279 (284)
T ss_pred HHHHHhC
Confidence 7666554
No 93
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=55.79 E-value=19 Score=24.26 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCCchhHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~ 26 (89)
+-|+|.|.++|++---.--+
T Consensus 200 ~iPLVlHGgSG~~~e~~~~a 219 (282)
T TIGR01858 200 DVPLVLHGASDVPDEDVRRT 219 (282)
T ss_pred CCCeEEecCCCCCHHHHHHH
Confidence 56999999999986554333
No 94
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=55.47 E-value=12 Score=24.38 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=18.5
Q ss_pred CCCCeEEEcCCCCchhHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
.++|++|-.++|.|.|-+++.-.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri 34 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERI 34 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHH
Confidence 78999999999999999877643
No 95
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=55.40 E-value=15 Score=20.59 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=14.9
Q ss_pred CCCchhHHHHHHHHHHHHH
Q psy5452 16 AGCGRTGTICAIDYVWGLL 34 (89)
Q Consensus 16 ~G~gRtg~~~~~~~~~~~~ 34 (89)
.|++|.|+.+++.-.+...
T Consensus 9 ~GkDr~GIva~is~vLAe~ 27 (90)
T COG3830 9 IGKDRVGIVAAVSRVLAEH 27 (90)
T ss_pred EcCCCCchhHHHHHHHHHc
Confidence 4999999999987765443
No 96
>PRK05320 rhodanese superfamily protein; Provisional
Probab=55.12 E-value=16 Score=24.15 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=14.9
Q ss_pred CCCCeEEEcCCCCchhHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~ 26 (89)
.+.|++++|..|. |+...+.
T Consensus 174 kdk~IvvyC~~G~-Rs~~Aa~ 193 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEKAAI 193 (257)
T ss_pred CCCeEEEECCCCH-HHHHHHH
Confidence 4679999999984 6665444
No 97
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=53.60 E-value=13 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=10.9
Q ss_pred CCCCeEEEcCCCC
Q psy5452 6 ETLPVLVHCSAGC 18 (89)
Q Consensus 6 ~~~pvvVHC~~G~ 18 (89)
.+.|++++|..|.
T Consensus 230 ~~~~ii~yC~~G~ 242 (281)
T PRK11493 230 FDRPIIASCGSGV 242 (281)
T ss_pred CCCCEEEECCcHH
Confidence 5669999998876
No 98
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=52.50 E-value=20 Score=19.84 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=12.7
Q ss_pred CeEEEcCCCCchhHHHHH
Q psy5452 9 PVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 9 pvvVHC~~G~gRtg~~~~ 26 (89)
.+++-|++|.+ |+++++
T Consensus 4 kILvvCgsG~~-TS~m~~ 20 (94)
T PRK10310 4 KIIVACGGAVA-TSTMAA 20 (94)
T ss_pred eEEEECCCchh-HHHHHH
Confidence 48999999998 555443
No 99
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=52.24 E-value=27 Score=18.18 Aligned_cols=16 Identities=38% Similarity=0.771 Sum_probs=11.4
Q ss_pred CCCCCeEEEcCCCCchh
Q psy5452 5 SETLPVLVHCSAGCGRT 21 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRt 21 (89)
+.+.+++++|..|. |+
T Consensus 54 ~~~~~iv~~c~~g~-~a 69 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS 69 (100)
T ss_pred CCCCeEEEEeCCCc-HH
Confidence 46679999995543 55
No 100
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.02 E-value=38 Score=22.88 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.4
Q ss_pred CCCeEEEcCCCCchhHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
+-|+|.|-++|++--..--++.
T Consensus 202 ~vPLVlHGgSG~~~e~~~~ai~ 223 (284)
T PRK12857 202 NIPIVLHGSSGVPDEAIRKAIS 223 (284)
T ss_pred CCCEEEeCCCCCCHHHHHHHHH
Confidence 5699999999998766544433
No 101
>PRK07411 hypothetical protein; Validated
Probab=51.31 E-value=20 Score=25.14 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=13.9
Q ss_pred CCCCeEEEcCCCCchhHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~ 24 (89)
.+.|++|+|..|. |+...
T Consensus 341 ~d~~IVvyC~~G~-RS~~a 358 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAKA 358 (390)
T ss_pred CCCeEEEECCCCH-HHHHH
Confidence 4679999998775 77654
No 102
>KOG1530|consensus
Probab=49.90 E-value=15 Score=22.06 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=13.8
Q ss_pred CCCCCeEEEcCCCCchhHH
Q psy5452 5 SETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~ 23 (89)
.....++++|..|. |+..
T Consensus 87 ~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 87 PHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred CCCCcEEEEeccCc-chhH
Confidence 44569999999987 6654
No 103
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=49.52 E-value=9 Score=25.81 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=38.9
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccH--------HHHHHHHHHhcchhhCCHHHHHHHHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSL--------FTLVREMRKQRIAMVQTKEQYILVHQAVKELFL 78 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~~R~~~v~~~~qy~f~~~~~~~~~~ 78 (89)
+-|+|.|-++|++.--.--++... + ..+++ .+.++......+....-..-.....+.+.+.++
T Consensus 205 ~iPLVlHGgSG~~~e~~~~ai~~G---i------~KiNi~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 275 (287)
T PF01116_consen 205 DIPLVLHGGSGLPDEQIRKAIKNG---I------SKINIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVK 275 (287)
T ss_dssp TSEEEESSCTTS-HHHHHHHHHTT---E------EEEEESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcC---c------eEEEEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHH
Confidence 679999999999877554443322 2 12222 233333333333334444555667777777777
Q ss_pred HHhcccc
Q psy5452 79 EQLRMID 85 (89)
Q Consensus 79 ~~~~~~~ 85 (89)
.+++++-
T Consensus 276 ~~i~~~g 282 (287)
T PF01116_consen 276 EKIRLFG 282 (287)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 7766543
No 104
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=48.45 E-value=25 Score=18.91 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=12.5
Q ss_pred CeEEEcCCCCchhHHHHH
Q psy5452 9 PVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 9 pvvVHC~~G~gRtg~~~~ 26 (89)
.+++.|++|.|= ++++.
T Consensus 2 kilvvCg~G~gt-S~ml~ 18 (87)
T cd05567 2 KIVFACDAGMGS-SAMGA 18 (87)
T ss_pred EEEEECCCCccH-HHHHH
Confidence 489999999984 44433
No 105
>PF11278 DUF3079: Protein of unknown function (DUF3079); InterPro: IPR021430 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=48.33 E-value=7.5 Score=19.21 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.8
Q ss_pred EEcCCCCchhHH
Q psy5452 12 VHCSAGCGRTGT 23 (89)
Q Consensus 12 VHC~~G~gRtg~ 23 (89)
.-|.+|.+||..
T Consensus 28 l~CGNGs~RtqH 39 (52)
T PF11278_consen 28 LACGNGSSRTQH 39 (52)
T ss_pred hcccCCcccccC
Confidence 469999999864
No 106
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=47.24 E-value=18 Score=19.26 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=10.3
Q ss_pred CCCCCeEEEcCCC
Q psy5452 5 SETLPVLVHCSAG 17 (89)
Q Consensus 5 ~~~~pvvVHC~~G 17 (89)
+.+.|+++.|..|
T Consensus 49 ~~~~~vvl~c~~g 61 (90)
T cd01524 49 PKDKEIIVYCAVG 61 (90)
T ss_pred CCCCcEEEEcCCC
Confidence 3457999999976
No 107
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=46.79 E-value=18 Score=24.49 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=10.6
Q ss_pred CCCCeEEEcCCCC
Q psy5452 6 ETLPVLVHCSAGC 18 (89)
Q Consensus 6 ~~~pvvVHC~~G~ 18 (89)
.+.|++++|..|.
T Consensus 268 ~~~~iv~yC~sG~ 280 (320)
T PLN02723 268 LDSPIVASCGTGV 280 (320)
T ss_pred CCCCEEEECCcHH
Confidence 5679999998864
No 108
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=45.40 E-value=39 Score=18.10 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=12.4
Q ss_pred CCCCeEEEcCCCCchhHH
Q psy5452 6 ETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~ 23 (89)
.+.|+++.|..|. |+..
T Consensus 55 ~~~~iv~~c~~G~-rs~~ 71 (95)
T cd01534 55 RGARIVLADDDGV-RADM 71 (95)
T ss_pred CCCeEEEECCCCC-hHHH
Confidence 3568999999875 5543
No 109
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.28 E-value=55 Score=22.10 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=16.1
Q ss_pred CCCeEEEcCCCCchhHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
+-|+|.|-++|+.--..--++.
T Consensus 202 ~vPLVLHGgSG~~~e~~~~ai~ 223 (284)
T PRK09195 202 NIPLVLHGASGLPTKDIQQTIK 223 (284)
T ss_pred CCCeEEecCCCCCHHHHHHHHH
Confidence 5699999999998665444433
No 110
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=45.22 E-value=34 Score=23.13 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=16.3
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
....++++.|..|..=+-++.++.
T Consensus 232 ~~~~~vI~yCgsG~~As~~~~al~ 255 (285)
T COG2897 232 DPDKEVIVYCGSGVRASVTWLALA 255 (285)
T ss_pred CCCCCEEEEcCCchHHHHHHHHHH
Confidence 356799999998875444444443
No 111
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=43.76 E-value=29 Score=24.99 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=15.6
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
+.+.|++++|..|. ||...+.
T Consensus 447 ~~~~~iivyC~~G~-rS~~aa~ 467 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQAL 467 (482)
T ss_pred CCCCeEEEECCCCH-HHHHHHH
Confidence 34569999999986 7776544
No 112
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=43.32 E-value=45 Score=19.85 Aligned_cols=13 Identities=8% Similarity=0.332 Sum_probs=10.5
Q ss_pred CCCCCeEEEcCCC
Q psy5452 5 SETLPVLVHCSAG 17 (89)
Q Consensus 5 ~~~~pvvVHC~~G 17 (89)
+.+.|++|+|..|
T Consensus 47 ~~~~~vVv~c~~g 59 (145)
T cd01535 47 PAAERYVLTCGSS 59 (145)
T ss_pred CCCCCEEEEeCCC
Confidence 3467999999985
No 113
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=43.23 E-value=32 Score=20.65 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.3
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGL 33 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~ 33 (89)
++|..+|....|.|.|-++-++..++-+
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4578899999999999999998877644
No 114
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=41.85 E-value=23 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=12.6
Q ss_pred CCCCCeEEEcCCCCchhH
Q psy5452 5 SETLPVLVHCSAGCGRTG 22 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg 22 (89)
+.+.|++|.|..|. |+.
T Consensus 56 ~~~~~ivv~c~~g~-~s~ 72 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQ 72 (108)
T ss_pred CCCCCEEEEeCCCC-CHH
Confidence 35679999999876 443
No 115
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=41.59 E-value=67 Score=21.55 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=17.0
Q ss_pred CCCeEEEcCCCCchhHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
+-|++.|.++|++..-.--++..
T Consensus 200 ~iPlv~hGgSGi~~e~i~~~i~~ 222 (282)
T TIGR01859 200 NIPLVLHGASGIPEEQIKKAIKL 222 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHHHc
Confidence 46999999999997665444433
No 116
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=41.49 E-value=67 Score=20.43 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.7
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYV 30 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~ 30 (89)
..+-+.|+|.+|+|.|-..+++.+-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~r 45 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALR 45 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHH
Confidence 5688999999999999987776553
No 117
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=40.00 E-value=62 Score=21.90 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCCCeEEEcCCCCchhHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~ 27 (89)
-+-|+|.|-++|++---.--++
T Consensus 201 ~~vPLVLHGgSG~~~e~~~kai 222 (286)
T PRK12738 201 VDVPLVLHGASDVPDEFVRRTI 222 (286)
T ss_pred hCCCEEEeCCCCCCHHHHHHHH
Confidence 3579999999999865543333
No 118
>PRK07413 hypothetical protein; Validated
Probab=39.36 E-value=44 Score=23.64 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=19.9
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
+.+|-+.|+|.+|+|.|-....+.+
T Consensus 198 ~~~g~i~VYTG~GKGKTTAAlGlAl 222 (382)
T PRK07413 198 NSSGGIEIYTGEGKGKSTSALGKAL 222 (382)
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHH
Confidence 4678899999999999987665544
No 119
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=38.66 E-value=59 Score=17.90 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=18.6
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
+...+++++-..|.|.|-+.-.+.
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 356789999999999997655443
No 120
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=38.65 E-value=79 Score=19.41 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=18.8
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYV 30 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~ 30 (89)
.|=+.|++..|+|.|-..++..+-
T Consensus 2 ~G~i~vy~g~G~Gkt~~a~g~~~r 25 (159)
T cd00561 2 KGLIQVYTGNGKGKTTAALGLALR 25 (159)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999887766553
No 121
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.92 E-value=56 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.1
Q ss_pred CCCCeEEEcCCCCchhHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~ 27 (89)
-+-|++.|.++|+.-.-+--++
T Consensus 199 ~~iPlV~hG~SGI~~e~~~~~i 220 (281)
T PRK06806 199 VHIPLVLHGGSGISPEDFKKCI 220 (281)
T ss_pred cCCCEEEECCCCCCHHHHHHHH
Confidence 3579999999999876654333
No 122
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=37.30 E-value=82 Score=18.64 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=15.4
Q ss_pred cCCCCCeEEEcCCCCchhHHHHHHHH
Q psy5452 4 ASETLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 4 ~~~~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
......++||-..|.|.|-..-.+.-
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999998775443
No 123
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=36.92 E-value=95 Score=19.39 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.6
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDYV 30 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~~ 30 (89)
...|=+.|++.+|+|.|-..+++.+-
T Consensus 3 ~~~Gli~v~~g~GkGKtt~a~g~a~r 28 (173)
T TIGR00708 3 EERGIIIVHTGNGKGKTTAAFGMALR 28 (173)
T ss_pred ccccEEEEECCCCCChHHHHHHHHHH
Confidence 45678999999999999987766553
No 124
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=36.62 E-value=54 Score=20.63 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=20.2
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
....|++++...|.|.|-...++..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999998766544
No 125
>KOG0208|consensus
Probab=35.37 E-value=60 Score=26.17 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCeEEEcCCCCchhHHHHHHHHHHHHHHcCC------CCCcccHHHHHHHHHHhcchhhCCHH--HHHHHHHHH
Q psy5452 8 LPVLVHCSAGCGRTGTICAIDYVWGLLRAGK------LNKDFSLFTLVREMRKQRIAMVQTKE--QYILVHQAV 73 (89)
Q Consensus 8 ~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r~~R~~~v~~~~--qy~f~~~~~ 73 (89)
+-.|=.|.+|..-.|.+-+++..+..-+.+. ..+..++.-+.--+|+.|...+.+.. ||.-+|.++
T Consensus 852 ~y~VgfCGDGANDCgALKaAdvGISLSeaEASvAApFTSk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~i 925 (1140)
T KOG0208|consen 852 GYKVGFCGDGANDCGALKAADVGISLSEAEASVAAPFTSKTPSISCVPDVIREGRAALVTSFACFKYMALYSAI 925 (1140)
T ss_pred CcEEEecCCCcchhhhhhhcccCcchhhhhHhhcCccccCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5567789999999999999998776554432 12234677777778999998888875 554444443
No 126
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=34.60 E-value=50 Score=24.73 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=13.6
Q ss_pred CCCCeEEEcCCCCchhHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~ 24 (89)
.+.|++++|..|. |++..
T Consensus 222 ~~~~VVvYC~sG~-rAa~~ 239 (610)
T PRK09629 222 PDKEVITHCQTHH-RSGFT 239 (610)
T ss_pred CCCCEEEECCCCh-HHHHH
Confidence 5679999999885 55543
No 127
>PRK06801 hypothetical protein; Provisional
Probab=34.53 E-value=71 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=16.5
Q ss_pred CCCeEEEcCCCCchhHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
+-|+|.|-++|++-.-.--++.
T Consensus 203 ~~PLVlHGGSgi~~e~~~~~i~ 224 (286)
T PRK06801 203 GLPLVLHGGSGISDADFRRAIE 224 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 5699999999998766544433
No 128
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=33.58 E-value=49 Score=19.67 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=14.7
Q ss_pred CCCCCeE--EEcCCCCchhHH
Q psy5452 5 SETLPVL--VHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvv--VHC~~G~gRtg~ 23 (89)
.+++|+| .|-..|.|.+=+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFV 69 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHH
Confidence 5677888 788888888754
No 129
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=33.04 E-value=61 Score=17.39 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=14.3
Q ss_pred CCCCCeEEEcCCCCchhHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~ 27 (89)
+...+++++|..|. |++..++.
T Consensus 65 ~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 65 DKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTSEEEEEESSSC-HHHHHHHH
T ss_pred cccccceeeeeccc-ccchhHHH
Confidence 45568999995544 56655554
No 130
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=32.98 E-value=1e+02 Score=21.61 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=11.6
Q ss_pred CCCeEEEcCCCCc
Q psy5452 7 TLPVLVHCSAGCG 19 (89)
Q Consensus 7 ~~pvvVHC~~G~g 19 (89)
+-|+|.|-++|++
T Consensus 226 ~vPLVLHGgSGvp 238 (347)
T PRK13399 226 NTHLVMHGSSSVP 238 (347)
T ss_pred CCCEEEeCCCCCC
Confidence 5799999999987
No 131
>KOG1529|consensus
Probab=32.97 E-value=57 Score=22.21 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=16.8
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
.+.|+++-|..|+.-+=++.+++.
T Consensus 235 ~~~p~~~sC~~Gisa~~i~~al~r 258 (286)
T KOG1529|consen 235 LSKPVIVSCGTGISASIIALALER 258 (286)
T ss_pred cCCCEEEeeccchhHHHHHHHHHh
Confidence 468999999999865544444443
No 132
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=32.83 E-value=31 Score=26.25 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.1
Q ss_pred cccCCCCCeEEEcCCCCchhHHH
Q psy5452 2 IQASETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 2 ~~~~~~~pvvVHC~~G~gRtg~~ 24 (89)
|....++++||...+|.|.|.+.
T Consensus 221 IR~ek~~ilVVQGaAGSGKTtiA 243 (747)
T COG3973 221 IRFEKNKILVVQGAAGSGKTTIA 243 (747)
T ss_pred HhccCCCeEEEecCCCCCchhHH
Confidence 56678899999999999999874
No 133
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=32.67 E-value=52 Score=21.63 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=14.9
Q ss_pred CCCCeEEEcCCCCchhHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~ 27 (89)
..+|.++-|+.|.||-+.+.+.
T Consensus 74 ~~~~~VLDaTaGLG~Da~vlA~ 95 (234)
T PF04445_consen 74 GMRPSVLDATAGLGRDAFVLAS 95 (234)
T ss_dssp TB---EEETT-TTSHHHHHHHH
T ss_pred CCCCEEEECCCcchHHHHHHHc
Confidence 3458999999999999987763
No 134
>PRK10812 putative DNAse; Provisional
Probab=32.31 E-value=18 Score=23.88 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=7.9
Q ss_pred CCCCeEEEcCCCC
Q psy5452 6 ETLPVLVHCSAGC 18 (89)
Q Consensus 6 ~~~pvvVHC~~G~ 18 (89)
.+.|+++||..+-
T Consensus 123 ~~~Pv~iH~r~a~ 135 (265)
T PRK10812 123 LNKPVIVHTRDAR 135 (265)
T ss_pred hCCCeEEEeeCch
Confidence 4567777776533
No 135
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.22 E-value=54 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=18.1
Q ss_pred cCCCCchhHHHHHHHHHHHHHHc
Q psy5452 14 CSAGCGRTGTICAIDYVWGLLRA 36 (89)
Q Consensus 14 C~~G~gRtg~~~~~~~~~~~~~~ 36 (89)
=++|+|+|-+.+++-..+....+
T Consensus 9 ~kGGvG~TTltAnLA~aL~~~G~ 31 (243)
T PF06564_consen 9 PKGGVGKTTLTANLAWALARLGE 31 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC
Confidence 36899999999988877766544
No 136
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=32.03 E-value=67 Score=22.50 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=13.2
Q ss_pred CCCCCeEEEcCCCCchhHH
Q psy5452 5 SETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~ 23 (89)
+.+.|++++|..|. |+..
T Consensus 341 ~~d~~iVvyC~~G~-rS~~ 358 (392)
T PRK07878 341 PQDRTIVLYCKTGV-RSAE 358 (392)
T ss_pred CCCCcEEEEcCCCh-HHHH
Confidence 35679999998864 6544
No 137
>smart00274 FOLN Follistatin-N-terminal domain-like. Follistatin-N-terminal domain-like, EGF-like. Region distinct from the kazal-like sequence
Probab=30.99 E-value=34 Score=14.44 Aligned_cols=7 Identities=43% Similarity=0.857 Sum_probs=4.9
Q ss_pred EEcCCCC
Q psy5452 12 VHCSAGC 18 (89)
Q Consensus 12 VHC~~G~ 18 (89)
|||..|.
T Consensus 5 v~C~~G~ 11 (26)
T smart00274 5 VQCPFGK 11 (26)
T ss_pred EECCCCC
Confidence 6777765
No 138
>PHA00447 lysozyme
Probab=30.89 E-value=42 Score=20.14 Aligned_cols=15 Identities=47% Similarity=0.649 Sum_probs=11.3
Q ss_pred cCCCCCeEEEcCCCC
Q psy5452 4 ASETLPVLVHCSAGC 18 (89)
Q Consensus 4 ~~~~~pvvVHC~~G~ 18 (89)
+++..-|+|||+++.
T Consensus 7 ~~~~~~ivIHhta~~ 21 (142)
T PHA00447 7 RSSTKAIFVHCSATK 21 (142)
T ss_pred CCCCCEEEEeCCCCC
Confidence 455667999999864
No 139
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=30.60 E-value=56 Score=18.91 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=17.2
Q ss_pred CCCCCeEEEcCCCCchhHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~ 26 (89)
..+.|+++..-.|.|++-+.-+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~ 40 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARA 40 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHC
T ss_pred CCCCcEEEEcCCCCCHHHHHHH
Confidence 5678999999999999986443
No 140
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.48 E-value=53 Score=22.89 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=24.7
Q ss_pred ccCCCCCeEEEcCCCCchhHHHHHHHHHHHH
Q psy5452 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGL 33 (89)
Q Consensus 3 ~~~~~~pvvVHC~~G~gRtg~~~~~~~~~~~ 33 (89)
.+.+.|=|+|-.-.|.|.|-+++++.-.++.
T Consensus 121 ~~~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 121 AESPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred HhCCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 3567888999999999999999986544433
No 141
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.43 E-value=52 Score=16.59 Aligned_cols=17 Identities=29% Similarity=0.745 Sum_probs=12.6
Q ss_pred eEEEcCCCCchhHHHHH
Q psy5452 10 VLVHCSAGCGRTGTICA 26 (89)
Q Consensus 10 vvVHC~~G~gRtg~~~~ 26 (89)
+++-|.+|.|-+.++..
T Consensus 2 il~vc~~G~~~s~~l~~ 18 (84)
T cd00133 2 ILVVCGSGIGSSSMLAE 18 (84)
T ss_pred EEEECCCcHhHHHHHHH
Confidence 68899999886665443
No 142
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=30.26 E-value=25 Score=19.94 Aligned_cols=30 Identities=10% Similarity=0.388 Sum_probs=24.5
Q ss_pred HHHhcchhhCCHHHHHHHHHHHHHHHHHHh
Q psy5452 52 MRKQRIAMVQTKEQYILVHQAVKELFLEQL 81 (89)
Q Consensus 52 ~r~~R~~~v~~~~qy~f~~~~~~~~~~~~~ 81 (89)
++..|--+++-++.|.|....+.+.++.+.
T Consensus 73 lk~kRviCLDIPDdy~yMq~eLi~lLkrkv 102 (109)
T COG4551 73 LKGKRVICLDIPDDYEYMQPELIDLLKRKV 102 (109)
T ss_pred hcCCeEEEEeCCchHhhcCHHHHHHHHHhh
Confidence 556666677889999999999999888765
No 143
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=30.15 E-value=1.7e+02 Score=20.63 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.4
Q ss_pred CCCeEEEcCCCCchhHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~ 26 (89)
+-|+|.|.++|+..--+--+
T Consensus 249 ~vPLVLHGgSGipde~i~~a 268 (350)
T PRK09197 249 PFDFVFHGGSGSTLEEIREA 268 (350)
T ss_pred CCCEEEeCCCCCCHHHHHHH
Confidence 67999999999986554333
No 144
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=30.09 E-value=21 Score=23.68 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=5.4
Q ss_pred CCeEEEcCCCC
Q psy5452 8 LPVLVHCSAGC 18 (89)
Q Consensus 8 ~pvvVHC~~G~ 18 (89)
.+.++||-+|.
T Consensus 150 ~~gi~HcFsGs 160 (256)
T COG0084 150 VGGVLHCFSGS 160 (256)
T ss_pred CCEEEEccCCC
Confidence 34455555544
No 145
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.92 E-value=1.3e+02 Score=18.54 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHhc
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQR 56 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R 56 (89)
...++++...|.|.|-..+++..- .+.++....-++..+.+..++..+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~~~L~~~l~~~~ 94 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITASDLLDELKQSR 94 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEHHHHHHHHHCCH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeecCceeccccccc
Confidence 345999999999999987776543 333443333456777777776543
No 146
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=29.59 E-value=1.3e+02 Score=18.00 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=18.4
Q ss_pred eEEEcCCCCchhHHHHHHHHHHHH
Q psy5452 10 VLVHCSAGCGRTGTICAIDYVWGL 33 (89)
Q Consensus 10 vvVHC~~G~gRtg~~~~~~~~~~~ 33 (89)
+++...+|.|+|-+.+.+...+..
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~ 25 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALAR 25 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCccHHHHHHHHHhcccc
Confidence 467889999999987776665544
No 147
>PHA03338 US22 family homolog; Provisional
Probab=29.02 E-value=40 Score=23.13 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=14.3
Q ss_pred EEEcCCCCchhHHHHHHH
Q psy5452 11 LVHCSAGCGRTGTICAID 28 (89)
Q Consensus 11 vVHC~~G~gRtg~~~~~~ 28 (89)
.+||+.|.+-+|++..-+
T Consensus 160 pihC~agl~esgill~R~ 177 (344)
T PHA03338 160 PIHCRAGLGEIGILLGRL 177 (344)
T ss_pred EeccccccchhHHHHHHH
Confidence 359999999999876533
No 148
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=28.93 E-value=70 Score=19.47 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.4
Q ss_pred eEEEcCCCCchhHHHHHHHHH
Q psy5452 10 VLVHCSAGCGRTGTICAIDYV 30 (89)
Q Consensus 10 vvVHC~~G~gRtg~~~~~~~~ 30 (89)
++.||..|.--|-+.+++-+.
T Consensus 2 iIY~c~gg~hsSvvAAaiHlg 22 (148)
T PF11385_consen 2 IIYHCYGGAHSSVVAAAIHLG 22 (148)
T ss_pred EEEEeCCChhHHHHHHHHHhC
Confidence 789999999877776666554
No 149
>PF14293 YWFCY: YWFCY protein
Probab=28.71 E-value=58 Score=16.87 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q psy5452 63 KEQYILVHQAVKEL 76 (89)
Q Consensus 63 ~~qy~f~~~~~~~~ 76 (89)
..-|.|||.+..++
T Consensus 26 ih~Y~~CY~af~~w 39 (61)
T PF14293_consen 26 IHFYWFCYEAFQEW 39 (61)
T ss_pred HHHHHHHHHHHHHh
Confidence 45789999988764
No 150
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=28.63 E-value=72 Score=24.23 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.3
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
...||++|--.+|.|.|-++..-.
T Consensus 20 ~~~g~~lV~AgaGSGKT~vl~~Ri 43 (721)
T PRK11773 20 APLGNMLVLAGAGSGKTRVLVHRI 43 (721)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHH
Confidence 457899999999999999987643
No 151
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=28.55 E-value=86 Score=21.42 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=14.8
Q ss_pred CeEEEcCCCCchhHHHHHHH
Q psy5452 9 PVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 9 pvvVHC~~G~gRtg~~~~~~ 28 (89)
.++|.|..|-.|++..+...
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L 95 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLL 95 (311)
T ss_pred cEEEEECCCChHHHHHHHHH
Confidence 49999976667888776543
No 152
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=28.40 E-value=1.4e+02 Score=20.19 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCCchhHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~ 26 (89)
+-|+|.|-++|.+---.--+
T Consensus 196 ~vPLVlHGgSG~~~e~~~~a 215 (276)
T cd00947 196 NVPLVLHGGSGIPDEQIRKA 215 (276)
T ss_pred CCCEEEeCCCCCCHHHHHHH
Confidence 57999999999986654333
No 153
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=28.32 E-value=25 Score=23.10 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=4.8
Q ss_pred CCCeEEEcCC
Q psy5452 7 TLPVLVHCSA 16 (89)
Q Consensus 7 ~~pvvVHC~~ 16 (89)
+.|+++||..
T Consensus 127 ~~Pv~iH~r~ 136 (258)
T PRK11449 127 DLPVILHSRR 136 (258)
T ss_pred CCCEEEEecC
Confidence 3455555543
No 154
>PRK08185 hypothetical protein; Provisional
Probab=27.54 E-value=1.3e+02 Score=20.38 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=14.2
Q ss_pred CCCeEEEcCCCCchhHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~ 24 (89)
+-|++.|-+.|++---.-
T Consensus 198 ~iPLVlHGgsg~~~e~~~ 215 (283)
T PRK08185 198 DIPLVLHGGSANPDAEIA 215 (283)
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 579999999999865543
No 155
>PF05124 S_layer_C: S-layer like family, C-terminal region ; InterPro: IPR022651 This entry represents the C-terminal domain of S-layer proteins. Some local similarity can be found to other S-layer protein families.
Probab=27.07 E-value=60 Score=21.19 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.2
Q ss_pred CCCCchhHHHHHHHHHHHH
Q psy5452 15 SAGCGRTGTICAIDYVWGL 33 (89)
Q Consensus 15 ~~G~gRtg~~~~~~~~~~~ 33 (89)
-+|.+|.|+-.|+..++..
T Consensus 203 vAG~Dr~gT~aA~~~l~~~ 221 (222)
T PF05124_consen 203 VAGSDRYGTRAAVEALMEM 221 (222)
T ss_pred EeCCCHHHHHHHHHHHHhh
Confidence 3689999999998877543
No 156
>PRK08939 primosomal protein DnaI; Reviewed
Probab=26.97 E-value=2.1e+02 Score=19.44 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=30.1
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHh
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQ 55 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 55 (89)
...+++++...|.|.|=..+|+..-+. ..+....-+.+.+.+..++..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHHHHHHHHHHH
Confidence 346899999999999998888755432 333212223455555555443
No 157
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=26.72 E-value=95 Score=19.35 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=14.7
Q ss_pred CCCCeEEEcCCCCchhHHHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
+.|-+.|.|.+|+|.|-....+.+
T Consensus 2 ~~G~i~vytG~GKGKTTAAlGlal 25 (172)
T PF02572_consen 2 ERGLIQVYTGDGKGKTTAALGLAL 25 (172)
T ss_dssp ----EEEEESSSS-HHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCchHHHHHHHH
Confidence 356789999999999986554433
No 158
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=26.67 E-value=1.2e+02 Score=18.48 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=17.4
Q ss_pred CeEEEcCCCCchhHHHHHHHHHH
Q psy5452 9 PVLVHCSAGCGRTGTICAIDYVW 31 (89)
Q Consensus 9 pvvVHC~~G~gRtg~~~~~~~~~ 31 (89)
..+|++..|.|.|.+.+.+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999998888765554
No 159
>PRK10425 DNase TatD; Provisional
Probab=26.65 E-value=22 Score=23.38 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=6.1
Q ss_pred CCCCeEEEcC
Q psy5452 6 ETLPVLVHCS 15 (89)
Q Consensus 6 ~~~pvvVHC~ 15 (89)
.+.|++|||.
T Consensus 120 ~~~Pv~iH~r 129 (258)
T PRK10425 120 LNMPVFMHCR 129 (258)
T ss_pred hCCCeEEEEe
Confidence 3456666666
No 160
>PRK10742 putative methyltransferase; Provisional
Probab=25.91 E-value=1.1e+02 Score=20.36 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.0
Q ss_pred CCCCeEEEcCCCCchhHHHHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~~~~ 27 (89)
...|.++=|++|.||-|..++.
T Consensus 87 g~~p~VLD~TAGlG~Da~~las 108 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLAS 108 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHH
Confidence 3468999999999999976653
No 161
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=25.77 E-value=49 Score=21.57 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=11.1
Q ss_pred CCCeEEEcCCCCchhH
Q psy5452 7 TLPVLVHCSAGCGRTG 22 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg 22 (89)
.....+-|.+|+||--
T Consensus 55 ~~~~alDcGAGIGRVT 70 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVT 70 (218)
T ss_dssp --SEEEEET-TTTHHH
T ss_pred CcceEEecccccchhH
Confidence 4567889999999954
No 162
>KOG4388|consensus
Probab=25.56 E-value=48 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.1
Q ss_pred CCCCeEEEcCCCC
Q psy5452 6 ETLPVLVHCSAGC 18 (89)
Q Consensus 6 ~~~pvvVHC~~G~ 18 (89)
.+..+++||.+|-
T Consensus 394 ~S~sli~HcHGGG 406 (880)
T KOG4388|consen 394 RSRSLIVHCHGGG 406 (880)
T ss_pred CCceEEEEecCCc
Confidence 4667999999774
No 163
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.45 E-value=1.9e+02 Score=20.30 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=11.8
Q ss_pred CCCeEEEcCCCCch
Q psy5452 7 TLPVLVHCSAGCGR 20 (89)
Q Consensus 7 ~~pvvVHC~~G~gR 20 (89)
+-|+|.|-++|+++
T Consensus 226 ~vPLVLHGgSG~~~ 239 (347)
T PRK09196 226 NTHLVMHGSSSVPQ 239 (347)
T ss_pred CCCEEEeCCCCCCH
Confidence 57999999999843
No 164
>TIGR00105 L31 ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc.
Probab=25.12 E-value=48 Score=17.39 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=10.8
Q ss_pred CCCCCeEEEcCCCCc
Q psy5452 5 SETLPVLVHCSAGCG 19 (89)
Q Consensus 5 ~~~~pvvVHC~~G~g 19 (89)
|.-.++.|+|+.|..
T Consensus 7 P~y~~v~~~~s~g~~ 21 (68)
T TIGR00105 7 PDYHEITVTCTCGNV 21 (68)
T ss_pred CCCEEEEEEECCCCE
Confidence 345688899987764
No 165
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=24.82 E-value=38 Score=24.17 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=11.9
Q ss_pred CCCchhHHHHHHHH
Q psy5452 16 AGCGRTGTICAIDY 29 (89)
Q Consensus 16 ~G~gRtg~~~~~~~ 29 (89)
.|.||||-+-+.+.
T Consensus 228 tG~GRTGk~fA~e~ 241 (404)
T COG4992 228 TGLGRTGKLFAYEH 241 (404)
T ss_pred cCCCccchHHHHHH
Confidence 58999999988765
No 166
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=24.81 E-value=1.9e+02 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=20.7
Q ss_pred CCeEEEcCCCCchhHHHHHHHHHHH
Q psy5452 8 LPVLVHCSAGCGRTGTICAIDYVWG 32 (89)
Q Consensus 8 ~pvvVHC~~G~gRtg~~~~~~~~~~ 32 (89)
.|+.+++..|.|.|=.+-++.--+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~ 59 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQ 59 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999998877765443
No 167
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=24.67 E-value=1.5e+02 Score=20.09 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCchhHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~ 27 (89)
+-|+|.|-.+|+.--..--++
T Consensus 202 ~iPlVlhGGSGi~~e~~~~~i 222 (293)
T PRK07315 202 GFPIVLHGGSGIPDDQIQEAI 222 (293)
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 469999999999876654443
No 168
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=24.51 E-value=88 Score=19.49 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=15.8
Q ss_pred eEEEcCCCCchhHHHHHHHH
Q psy5452 10 VLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 10 vvVHC~~G~gRtg~~~~~~~ 29 (89)
++||+-+|.|.|-.+..+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~ 20 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLK 20 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHH
Confidence 58999999999987665433
No 169
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.36 E-value=2.1e+02 Score=20.07 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.0
Q ss_pred CCCeEEEcCCCCchhHH
Q psy5452 7 TLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~ 23 (89)
+-|+|.|-++|..---.
T Consensus 242 ~~pLVlHGgSG~~~e~~ 258 (340)
T cd00453 242 SLNFVFHGGSGSTAQEI 258 (340)
T ss_pred CCceEEeCCCCCCHHHH
Confidence 67999999999986544
No 170
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=24.26 E-value=33 Score=24.82 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=11.8
Q ss_pred CCCchhHHHHHHHH
Q psy5452 16 AGCGRTGTICAIDY 29 (89)
Q Consensus 16 ~G~gRtg~~~~~~~ 29 (89)
.|.||||.+.+++.
T Consensus 259 tGFGRTG~~FA~e~ 272 (449)
T COG0161 259 TGFGRTGKMFACEH 272 (449)
T ss_pred eCCCcCchhhhhhh
Confidence 58999999888765
No 171
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=24.23 E-value=1.2e+02 Score=18.54 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=25.1
Q ss_pred HhcchhhCCHHHHHHHHHHHHHHHHHHhcc
Q psy5452 54 KQRIAMVQTKEQYILVHQAVKELFLEQLRM 83 (89)
Q Consensus 54 ~~R~~~v~~~~qy~f~~~~~~~~~~~~~~~ 83 (89)
+.=||-+...++|....+-+.+|++.+++.
T Consensus 50 eaVPGnIR~AeHFv~flkR~veylk~rlrv 79 (146)
T PF06777_consen 50 EAVPGNIRRAEHFVAFLKRFVEYLKTRLRV 79 (146)
T ss_pred hcCCchHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 345889999999998888899999988754
No 172
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=23.93 E-value=1.5e+02 Score=20.40 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=13.5
Q ss_pred CCCCeEEEcCCCCchh
Q psy5452 6 ETLPVLVHCSAGCGRT 21 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRt 21 (89)
-+-|+|.|-++|++--
T Consensus 203 ~~iPLVLHGgSGip~e 218 (307)
T PRK05835 203 TNIPLVLHGASAIPDD 218 (307)
T ss_pred hCCCEEEeCCCCCchH
Confidence 3579999999999875
No 173
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=23.55 E-value=32 Score=21.66 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=8.5
Q ss_pred CCCCeEEEcCCC
Q psy5452 6 ETLPVLVHCSAG 17 (89)
Q Consensus 6 ~~~pvvVHC~~G 17 (89)
.+-|+++||..+
T Consensus 120 ~~~pv~iH~~~~ 131 (251)
T cd01310 120 LNLPVVIHSRDA 131 (251)
T ss_pred hCCCeEEEeeCc
Confidence 456888888754
No 174
>smart00644 Ami_2 Ami_2.
Probab=23.27 E-value=53 Score=18.60 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=9.9
Q ss_pred CCeEEEcCCCCc
Q psy5452 8 LPVLVHCSAGCG 19 (89)
Q Consensus 8 ~pvvVHC~~G~g 19 (89)
.-|+|||++|-+
T Consensus 4 ~~IviH~t~~~~ 15 (126)
T smart00644 4 RGIVIHHTANSN 15 (126)
T ss_pred CEEEEecCCCCc
Confidence 458999999876
No 175
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.05 E-value=2e+02 Score=20.11 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.2
Q ss_pred CCCeEEEcCCCCchhHHHHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~~~~ 29 (89)
+-|+|.|-++|...--+--++..
T Consensus 245 ~ipLVLHGgSG~~~e~i~kai~~ 267 (345)
T cd00946 245 PLYFVFHGGSGSTKEEIREAISY 267 (345)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHc
Confidence 56999999999987665544443
No 176
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.99 E-value=1.2e+02 Score=20.97 Aligned_cols=18 Identities=17% Similarity=0.536 Sum_probs=13.4
Q ss_pred CCCCCeEEEcCCCCchhHH
Q psy5452 5 SETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~ 23 (89)
+.+.|++++|..|. |+..
T Consensus 55 ~~~~~IvvyC~~G~-rs~~ 72 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH 72 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH
Confidence 45679999999874 6554
No 177
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=22.49 E-value=1.1e+02 Score=23.16 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.4
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
...+|++|--.+|.|.|-+++.-.
T Consensus 15 ~~~g~~lV~AgaGSGKT~~L~~Ri 38 (715)
T TIGR01075 15 APPGNLLVLAGAGSGKTRVLTHRI 38 (715)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHH
Confidence 457899999999999999987643
No 178
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.41 E-value=1.2e+02 Score=15.91 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=11.5
Q ss_pred eEEEcCCCCchhHHH
Q psy5452 10 VLVHCSAGCGRTGTI 24 (89)
Q Consensus 10 vvVHC~~G~gRtg~~ 24 (89)
++|-|.+|.|=+.+.
T Consensus 2 ilvvC~~G~~tS~ll 16 (86)
T cd05563 2 ILAVCGSGLGSSLML 16 (86)
T ss_pred EEEECCCCccHHHHH
Confidence 789999999854443
No 179
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=21.86 E-value=2.1e+02 Score=20.09 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=11.4
Q ss_pred CCCeEEEcCCCCc
Q psy5452 7 TLPVLVHCSAGCG 19 (89)
Q Consensus 7 ~~pvvVHC~~G~g 19 (89)
+-|+|.|-++|+.
T Consensus 224 ~vPLVLHGgSG~p 236 (347)
T TIGR01521 224 DTHLVMHGSSSVP 236 (347)
T ss_pred CCCEEEeCCCCCc
Confidence 5799999999987
No 180
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=21.76 E-value=1.2e+02 Score=20.89 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=13.2
Q ss_pred CCCCeEEEcCCCCchhHHH
Q psy5452 6 ETLPVLVHCSAGCGRTGTI 24 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~~ 24 (89)
.+.|+++.|..|. |+...
T Consensus 313 ~~~~IvvyC~~G~-rS~~A 330 (355)
T PRK05597 313 AGDEVVVYCAAGV-RSAQA 330 (355)
T ss_pred CCCeEEEEcCCCH-HHHHH
Confidence 5678999999874 66543
No 181
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=21.23 E-value=1e+02 Score=17.17 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=11.9
Q ss_pred CeEEEcCCCCchhHH
Q psy5452 9 PVLVHCSAGCGRTGT 23 (89)
Q Consensus 9 pvvVHC~~G~gRtg~ 23 (89)
.+++-|.+|.|=|-+
T Consensus 3 KIL~aCG~GvgSS~~ 17 (93)
T COG3414 3 KILAACGNGVGSSTM 17 (93)
T ss_pred EEEEECCCCccHHHH
Confidence 589999999985544
No 182
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=21.19 E-value=32 Score=24.80 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=11.6
Q ss_pred CCCchhHHHHHHHH
Q psy5452 16 AGCGRTGTICAIDY 29 (89)
Q Consensus 16 ~G~gRtg~~~~~~~ 29 (89)
.|.||||.+-+.+.
T Consensus 266 tG~GRTG~~fa~E~ 279 (447)
T COG0160 266 TGFGRTGKMFAFEH 279 (447)
T ss_pred cCCCccccchhhhh
Confidence 69999999887765
No 183
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=21.17 E-value=65 Score=17.24 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=7.9
Q ss_pred CCCCeEEEcCCCCc
Q psy5452 6 ETLPVLVHCSAGCG 19 (89)
Q Consensus 6 ~~~pvvVHC~~G~g 19 (89)
-+.|..|-|+.|-|
T Consensus 25 L~kPAMI~cs~~~G 38 (78)
T PF13341_consen 25 LNKPAMIFCSRGGG 38 (78)
T ss_dssp SSS--EEEE-STT-
T ss_pred cCCceEEEEeCCCc
Confidence 35799999999954
No 184
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=20.98 E-value=2.4e+02 Score=19.93 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.0
Q ss_pred CeEEEcCCCCchhHHHHHHHH
Q psy5452 9 PVLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 9 pvvVHC~~G~gRtg~~~~~~~ 29 (89)
|+|.|-++|+.-.-+--++..
T Consensus 259 pLVLHGgSGi~~e~i~kai~~ 279 (357)
T TIGR01520 259 FFVFHGGSGSTKQEIKEALSY 279 (357)
T ss_pred cEEEeCCCCCCHHHHHHHHHC
Confidence 499999999886655444443
No 185
>smart00305 HintC Hint (Hedgehog/Intein) domain C-terminal region. Hedgehog/Intein domain, C-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=20.87 E-value=70 Score=14.95 Aligned_cols=12 Identities=33% Similarity=0.277 Sum_probs=8.7
Q ss_pred CCeEEEcCCCCc
Q psy5452 8 LPVLVHCSAGCG 19 (89)
Q Consensus 8 ~pvvVHC~~G~g 19 (89)
..+++||+.+..
T Consensus 34 ngi~~hN~~~~~ 45 (46)
T smart00305 34 NGILVHNCAEIE 45 (46)
T ss_pred CCEEEEeeeccc
Confidence 368899987653
No 186
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=20.81 E-value=1.3e+02 Score=22.87 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=20.3
Q ss_pred CCCCCeEEEcCCCCchhHHHHHHH
Q psy5452 5 SETLPVLVHCSAGCGRTGTICAID 28 (89)
Q Consensus 5 ~~~~pvvVHC~~G~gRtg~~~~~~ 28 (89)
...||++|--.+|.|.|-+++.-.
T Consensus 13 ~~~g~~lV~AgpGSGKT~vL~~Ri 36 (672)
T PRK10919 13 FVTGPCLVLAGAGSGKTRVITNKI 36 (672)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHH
Confidence 457999999999999999987643
No 187
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=20.61 E-value=65 Score=18.03 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=13.5
Q ss_pred CCCCeEEEcCCCCchhHH
Q psy5452 6 ETLPVLVHCSAGCGRTGT 23 (89)
Q Consensus 6 ~~~pvvVHC~~G~gRtg~ 23 (89)
++..+.|||.++-+-.|.
T Consensus 11 ~~~~L~vhC~S~d~Dlg~ 28 (110)
T PF05938_consen 11 PGKILTVHCKSKDDDLGW 28 (110)
T ss_pred CCCeEEEEeeCCCccCCC
Confidence 566799999998765553
No 188
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=20.59 E-value=1.4e+02 Score=17.21 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.1
Q ss_pred eEEEcCCCCchhHHHHHHHH
Q psy5452 10 VLVHCSAGCGRTGTICAIDY 29 (89)
Q Consensus 10 vvVHC~~G~gRtg~~~~~~~ 29 (89)
|++-|.....||-+.-++.-
T Consensus 1 ILFvC~~N~cRS~mAEai~~ 20 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILR 20 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred CEEEeCCCcchHHHHHHHHH
Confidence 68899999999998666544
No 189
>PF09289 FOLN: Follistatin/Osteonectin-like EGF domain; InterPro: IPR015369 This domain is predominantly found in osteonectin and follistatin. They adopt an EGF-like structure [, ]. Follistatin is involved in diverse activities from embryonic development to cell secretion. ; GO: 0005515 protein binding; PDB: 1LR7_A 1LR8_A 1LR9_A 2ARP_F 3B4V_H 2KCX_A 3SEK_C 2P6A_D 3HH2_C 2B0U_D ....
Probab=20.57 E-value=31 Score=14.11 Aligned_cols=7 Identities=43% Similarity=0.994 Sum_probs=2.2
Q ss_pred EEcCCCC
Q psy5452 12 VHCSAGC 18 (89)
Q Consensus 12 VHC~~G~ 18 (89)
+||..|+
T Consensus 4 ~~Ck~GK 10 (22)
T PF09289_consen 4 FHCKRGK 10 (22)
T ss_dssp ---BTTE
T ss_pred cccCCCC
Confidence 4666654
No 190
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=20.35 E-value=1.1e+02 Score=18.02 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=11.5
Q ss_pred CeEEEcCCCCchhHHHHHH
Q psy5452 9 PVLVHCSAGCGRTGTICAI 27 (89)
Q Consensus 9 pvvVHC~~G~gRtg~~~~~ 27 (89)
|++|- |.+|||+-...
T Consensus 2 pvfI~---G~~RSGTTlL~ 17 (215)
T PF13469_consen 2 PVFIV---GMPRSGTTLLS 17 (215)
T ss_dssp CEEEE---CSTTSSHHHHH
T ss_pred eEEEE---CCCCCcHHHHH
Confidence 55555 78899987666
No 191
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=20.26 E-value=1.8e+02 Score=16.93 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.1
Q ss_pred CCCeEEEcCCCCchhHHHHH
Q psy5452 7 TLPVLVHCSAGCGRTGTICA 26 (89)
Q Consensus 7 ~~pvvVHC~~G~gRtg~~~~ 26 (89)
.+..+++...|.|.|.+.+.
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcChhhhh
Confidence 56788888999999999875
Done!