RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5452
(89 letters)
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 99 bits (250), Expect = 8e-28
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 VIQASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMV 60
Q + P++VHCSAG GRTGT AID + L A +F V+E+R QR MV
Sbjct: 160 SQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEA---EGVVDIFQTVKELRSQRPGMV 216
Query: 61 QTKEQYILVHQAVKE 75
QT+EQYI +++A+ E
Sbjct: 217 QTEEQYIFLYRAILE 231
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 99.3 bits (248), Expect = 3e-27
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 2 IQASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQ 61
Q++ T P++VHCSAG GRTGT AID + L AG K+ +F +V+E+R QR MVQ
Sbjct: 189 SQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAG---KEVDIFEIVKELRSQRPGMVQ 245
Query: 62 TKEQYILVHQAV 73
T+EQYI +++A+
Sbjct: 246 TEEQYIFLYRAI 257
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 94.7 bits (236), Expect = 9e-26
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
P++VHCSAG GRTGT AID + L A + +F +V+E+R QR MVQT+EQYI
Sbjct: 170 PIVVHCSAGVGRTGTFIAIDILLQQLEAE---GEVDVFQIVKELRSQRPGMVQTEEQYIF 226
Query: 69 VHQAV 73
++ AV
Sbjct: 227 LYDAV 231
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 83.6 bits (207), Expect = 9e-23
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
Q+ + PV+VHCSAG GRTGT AID + L A D F V+E+R QR MVQT
Sbjct: 35 QSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDI--FDTVKELRSQRPGMVQT 92
Query: 63 KEQYILVHQAVKE 75
+EQY+ +++A+ E
Sbjct: 93 EEQYLFLYRALLE 105
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 83.6 bits (207), Expect = 9e-23
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
Q+ + PV+VHCSAG GRTGT AID + L A D F V+E+R QR MVQT
Sbjct: 35 QSESSGPVVVHCSAGVGRTGTFVAIDILLQQLEAEAGEVDI--FDTVKELRSQRPGMVQT 92
Query: 63 KEQYILVHQAVKE 75
+EQY+ +++A+ E
Sbjct: 93 EEQYLFLYRALLE 105
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 81.4 bits (201), Expect = 4e-20
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 6 ETLPVLVHCSAGCGRTGTICAIDYVWGLLR----------AGKLNKDFSLFTLVREMRKQ 55
T P++VHCSAG GRTGT A+D LLR + +D +F +V +R Q
Sbjct: 217 RTGPIIVHCSAGVGRTGTFIALDI---LLRMPNDTLNHTDTWEDTQDL-IFQIVLSLRSQ 272
Query: 56 RIAMVQTKEQYILVHQAVKELFLEQL 81
R+ MVQ K Q+ ++ A EL Q+
Sbjct: 273 RMKMVQNKTQFKFLYDAFLELNKSQI 298
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 60.0 bits (145), Expect = 3e-12
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
P++VHCSAG GR GT CAID L K+ L +V ++RKQR + V EQY
Sbjct: 249 PIVVHCSAGIGRAGTFCAIDNALEQLEK---EKEVCLGEIVLKIRKQRHSSVFLPEQYAF 305
Query: 69 VHQAVKELFLEQLR 82
++A+K +E+ +
Sbjct: 306 CYKALKYAIIEEAK 319
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 51.2 bits (122), Expect = 4e-09
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
P++VHCS G G+TG CA+D L K L ++R+QR A + + Y+
Sbjct: 231 PIVVHCSDGVGKTGIFCAVDICLNQL---VKRKAICLAKTAEKIREQRHAGIMNFDDYLF 287
Query: 69 VHQAVKEL--FLEQLRMID 85
+ + L FL +++ ID
Sbjct: 288 IQPGYEVLHYFLSKIKAID 306
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 50.4 bits (120), Expect = 7e-09
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
P+LVHCSAG R G CAID + L ++VR++RKQR + +QYI
Sbjct: 231 PILVHCSAGLDRAGAFCAIDICISKYNERAI---IPLLSIVRDLRKQRHNCLSLPQQYIF 287
Query: 69 VHQAV 73
+ V
Sbjct: 288 CYFIV 292
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 46.7 bits (111), Expect = 8e-08
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKE 64
S+ V+VHC G GR+GT+ A + +L G D + R++R V T+
Sbjct: 103 SKGKKVVVHCQGGIGRSGTVIAA---YLMLYGGLSLAD----EAIAVKRRRRPGAVVTEI 155
Query: 65 QYILVHQAVK 74
Q++ +
Sbjct: 156 QHLFELEQEL 165
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 44.5 bits (105), Expect = 1e-06
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
+ P++VHC+AG GRT C +D A S+ ++V +R QR +
Sbjct: 223 NRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDA---CATVSIPSIVSSIRNQRYYSLFI 279
Query: 63 KEQYILVHQAVK 74
QY ++AVK
Sbjct: 280 PFQYFFCYRAVK 291
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 36.3 bits (85), Expect = 4e-04
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 4 ASETLPVLVHCSAGCGRTGTICAIDYVWGLLRA 36
A PVL HC+AG RTG A+ LL
Sbjct: 120 ADPDGPVLFHCTAGKDRTGVAAAL-----LLSL 147
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 32.6 bits (75), Expect = 0.009
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 9 PVLVHCSAGCGRTGTICA 26
VLVHC AG R+ T+
Sbjct: 73 KVLVHCQAGISRSATLII 90
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 31.9 bits (73), Expect = 0.016
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 9 PVLVHCSAGCGRTGTICA 26
VLVHC AG R+ T+
Sbjct: 80 KVLVHCQAGVSRSATLII 97
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 32.4 bits (74), Expect = 0.016
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 6 ETLPVLVHCSAGCGRTGTICAI 27
E PVL+HC+AG RTG + A+
Sbjct: 135 ENGPVLIHCTAGKDRTGLVAAL 156
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 30.2 bits (69), Expect = 0.088
Identities = 9/17 (52%), Positives = 16/17 (94%)
Query: 66 YILVHQAVKELFLEQLR 82
Y+LVH++VKE F+++L+
Sbjct: 245 YVLVHESVKEKFIKELK 261
>gnl|CDD|225700 COG3158, Kup, K+ transporter [Inorganic ion transport and
metabolism].
Length = 627
Score = 29.9 bits (68), Expect = 0.12
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 23 TICAIDYVWGLLRAGKLNKD----FSLFTLVREMRKQRIAMV 60
I I YV +LRA N SL L R +R A++
Sbjct: 68 LIVTIKYVLFVLRAD--NNGEGGILSLMALARRAAPRRTALL 107
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 28.3 bits (64), Expect = 0.27
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 9 PVLVHCSAGCGRTGTICA 26
VLVHC AG R+ T+
Sbjct: 83 KVLVHCLAGVSRSATLVI 100
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 28.4 bits (64), Expect = 0.35
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 12 VHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQ 61
VHC AG GR + A+ L+ G + VRE RK I Q
Sbjct: 103 VHCVAGLGRAPILVAL----ALVEYGGMEP-LDAVGFVREKRKGAINQTQ 147
>gnl|CDD|206020 pfam13849, Y_phosphatase_m, Myotubularin Y_phosphatase-like.
This short region is highly conserved and seems to be
common to many myotubularin proteins with protein
tyrosine pyrophosphate activity. As the family has a
number of highly conserved residues such as histidine,
cysteine, glutamine and aspartate, it is possible that
this represents a catalytic core of the active
enzymatic part of the proteins.
Length = 55
Score = 25.9 bits (58), Expect = 0.87
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 9 PVLVHCSAGCGRTGTICAI 27
VLVHCS G RT + ++
Sbjct: 2 SVLVHCSDGWDRTSQLSSL 20
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 27.3 bits (61), Expect = 0.89
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 9 PVLVHCSAGCGRTGTICAI 27
PVL+HC+ G RTG +
Sbjct: 93 PVLIHCNRGKHRTGLVIGC 111
>gnl|CDD|237598 PRK14056, PRK14056, phenylalanine 4-monooxygenase; Provisional.
Length = 578
Score = 27.3 bits (61), Expect = 0.97
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 38 KLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELF 77
+LN+ L+ VR++R+ I T EQ + + + +K+
Sbjct: 484 ELNELERLYQTVRDIREGGILHDATIEQLVAIQEVLKKFH 523
>gnl|CDD|233279 TIGR01125, TIGR01125, ribosomal protein S12 methylthiotransferase
RimO. Members of this protein are the
methylthiotransferase RimO, which modifies a conserved
Asp residue in ribosomal protein S12. This clade of
radical SAM family proteins is closely related to the
tRNA modification bifunctional enzyme MiaB (see
TIGR01574), and it catalyzes the same two types of
reactions: a radical-mechanism sulfur insertion, and a
methylation of the inserted sulfur. This clade spans
alpha and gamma proteobacteria, cyano bacteria,
Deinococcus, Porphyromonas, Aquifex, Helicobacter,
Campylobacter, Thermotoga, Chlamydia, Streptococcus
coelicolor and Clostridium, but does not include most
other gram positive bacteria, archaea or eukaryotes
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 430
Score = 27.0 bits (60), Expect = 1.2
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 19/64 (29%)
Query: 15 SAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVK 74
+ GC R C I + G LR+ + + KE LV Q VK
Sbjct: 142 AEGCNRRCAFCIIPSIRGKLRSRPIEE-------------------ILKEAERLVDQGVK 182
Query: 75 ELFL 78
E+ L
Sbjct: 183 EIIL 186
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 26.3 bits (59), Expect = 2.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 16 AGCGRTGT 23
AGCGRTGT
Sbjct: 242 AGCGRTGT 249
>gnl|CDD|185273 PRK15375, PRK15375, pathogenicity island 1 effector protein StpP;
Provisional.
Length = 535
Score = 26.3 bits (57), Expect = 2.6
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 4 ASETLPVLVHCSAGCGRTGTICA 26
+ + LP ++HC G GRTGT+ A
Sbjct: 464 SDKHLP-MIHCLGGVGRTGTMAA 485
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 25.8 bits (57), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 51 EMRKQRIAMVQTKEQYILV 69
EMR +A+ + KE+ ILV
Sbjct: 857 EMRVLYVALTRAKEKLILV 875
>gnl|CDD|111949 pfam03109, ABC1, ABC1 family. This family includes ABC1 from
yeast and AarF from E. coli. These proteins have a
nuclear or mitochondrial subcellular location in
eukaryotes. The exact molecular functions of these
proteins is not clear, however yeast ABC1 suppresses a
cytochrome b mRNA translation defect and is essential
for the electron transfer in the bc 1 complex and E.
coli AarF is required for ubiquinone production. It has
been suggested that members of the ABC1 family are
novel chaperonins. These proteins are unrelated to the
ABC transporter proteins.
Length = 117
Score = 25.2 bits (56), Expect = 4.1
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 29 YVWGLLRAGKLNKDFSLFTLVREMRKQRI 57
+ K F L LV E RK
Sbjct: 58 LKFLAKILKKFFPGFDLDWLVDEFRKSLP 86
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 25.3 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 16 AGCGRTGT 23
AGCGRTGT
Sbjct: 238 AGCGRTGT 245
>gnl|CDD|203881 pfam08234, Spindle_Spc25, Chromosome segregation protein Spc25.
This is a family of chromosome segregation proteins. It
contains Spc25, which is a conserved eukaryotic
kinetochore protein involved in cell division. In fungi
the Spc25 protein is a subunit of the Nuf2-Ndc80
complex, and in vertebrates it forms part of the Ndc80
complex.
Length = 74
Score = 24.4 bits (54), Expect = 5.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 38 KLNKDFSLFTLVREMRKQ 55
+LNK L ++ +RK
Sbjct: 54 ELNKTNDLSAFLKRVRKA 71
>gnl|CDD|240399 PTZ00393, PTZ00393, protein tyrosine phosphatase; Provisional.
Length = 241
Score = 24.9 bits (54), Expect = 5.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 10 VLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRI 57
V VHC AG GR + +I L+ G D +F +R+ RK I
Sbjct: 173 VAVHCVAGLGRAPVLASI----VLIEFGMDPIDAIVF--IRDRRKGAI 214
>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional.
Length = 189
Score = 24.8 bits (54), Expect = 5.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 38 KLNKDFSLFTLVREMRK 54
++N D + + LVRE+RK
Sbjct: 152 RVNVDEAFYELVREIRK 168
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 25.1 bits (55), Expect = 6.4
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 33 LLRAGKLNKDFSLFTLVREMRKQRIAMVQTK 63
L++ GK D T +MRK+R+ +++K
Sbjct: 299 LIKEGKAYVDD---TPREQMRKERMDGIESK 326
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 24.8 bits (55), Expect = 8.0
Identities = 7/17 (41%), Positives = 15/17 (88%)
Query: 66 YILVHQAVKELFLEQLR 82
Y+LVH+++K+ +E+L+
Sbjct: 245 YVLVHESIKDELIEELK 261
>gnl|CDD|177916 PLN02277, PLN02277, H(+) -translocating inorganic pyrophosphatase.
Length = 730
Score = 24.8 bits (54), Expect = 8.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 16 AGCGRTGTICAIDYVW 31
A CG G I A +VW
Sbjct: 353 ALCGLVGIITAYAFVW 368
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 24.7 bits (54), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 39 LNKDFSLFTLVREMRKQRIAMVQTKEQYILVHQAVKELFLEQLRMID 85
LN LV+E R+ R + Q +E+Y Q V EL +L I
Sbjct: 260 LNNQLE--QLVQEYREARRTLSQVQEKYNQASQGVSEL-TRELNEIS 303
>gnl|CDD|233392 TIGR01391, dnaG, DNA primase, catalytic core. Members of this
family are DNA primase, a ubiquitous bacteria protein.
Most members of this family contain nearly two hundred
additional residues C-terminal to the region represented
here, but conservation between species is poor and the
C-terminal region was not included in the seed
alignment. This protein contains a CHC2 zinc finger
(pfam01807) and a Toprim domain (pfam01751) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 415
Score = 24.5 bits (54), Expect = 8.8
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 13 HCSAGCGRTGTICA-------IDYVWGLLR-AGKLNKDFSLFTLVREMRKQRIAMVQTKE 64
HC GCG G I +V + A + D + K+ ++
Sbjct: 57 HC-FGCGAGGDAIKFLMEIEGISFVEAVEELAKRAGIDLPF--EKDQQEKKEQK--SKRK 111
Query: 65 QYILVHQAVKELFLEQLR 82
+ + + + F QL+
Sbjct: 112 KLYELLELAAKFFKNQLK 129
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 24.6 bits (54), Expect = 8.9
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 66 YILVHQAVKELFLEQLR 82
Y+LVH+++K+ F+E L+
Sbjct: 254 YVLVHRSIKDKFIEALK 270
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.415
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,489,021
Number of extensions: 360818
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 47
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)