RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5452
(89 letters)
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 93.0 bits (230), Expect = 4e-25
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
+ PV+VHCSAG GRTGT ID + ++R ++ D + ++ +R QR MVQT
Sbjct: 230 SIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQT 289
Query: 63 KEQYILVHQAVKELFLEQL 81
+ QY ++ AV+ ++E L
Sbjct: 290 EAQYRSIYMAVQH-YIETL 307
>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
shp-1 [TaxId: 9606]}
Length = 284
Score = 87.6 bits (216), Expect = 3e-23
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
P++VH SAG GRTGTI ID + + L+ D + ++ +R QR MVQT
Sbjct: 200 SLPHAGPIIVHSSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQT 259
Query: 63 KEQYILVHQAVKELFLEQLR 82
+ QY ++ A+ + F+E +
Sbjct: 260 EAQYKFIYVAIAQ-FIETTK 278
>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor
type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 308
Score = 83.3 bits (205), Expect = 1e-21
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 1 VIQASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMV 60
+ + P++ HCSAG GR+GT+ ID V GL+ + DF + LVR MR QR MV
Sbjct: 226 MRHIHRSGPIITHCSAGIGRSGTLICIDVVLGLISQ---DLDFDISDLVRCMRLQRHGMV 282
Query: 61 QTKEQYILVHQAVKELFLEQLRM 83
QT++QYI +Q + L +L+
Sbjct: 283 QTEDQYIFCYQVILY-VLTRLQA 304
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 288
Score = 81.8 bits (201), Expect = 6e-21
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
++VHCSAG GRTGT ID + ++ + + ++ V +R QR MVQT QY+
Sbjct: 221 AIVVHCSAGVGRTGTFVVIDAMLDMMHS---ERKVDVYGFVSRIRAQRCQMVQTDMQYVF 277
Query: 69 VHQAVKELFL 78
++QA+ E +L
Sbjct: 278 IYQALLEHYL 287
>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
mu [TaxId: 9606]}
Length = 278
Score = 78.3 bits (192), Expect = 7e-20
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
P++VHCSAG GRTG ID + + ++ VRE+R +R+ MVQT
Sbjct: 206 SPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAER---EGVVDIYNCVRELRSRRVNMVQT 262
Query: 63 KEQYILVHQAVKELFL 78
+EQY+ +H A+ E L
Sbjct: 263 EEQYVFIHDAILEACL 278
>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 249
Score = 77.5 bits (190), Expect = 1e-19
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
Q + P+ VHCSAG GRTG + V +R +F V+ +R QR AMVQT
Sbjct: 175 QFGQDGPITVHCSAGVGRTGVFITLSIVLERMRY---EGVVDMFQTVKTLRTQRPAMVQT 231
Query: 63 KEQYILVHQAVKE 75
++QY L ++A E
Sbjct: 232 EDQYQLCYRAALE 244
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 77.5 bits (190), Expect = 2e-19
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 2 IQASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRI-AMV 60
+ L ++H AG GRT + + N S+ +V +MR QR MV
Sbjct: 206 VADDSKLRPVIHSRAGVGRTAQLIGAMCMN-----DSRNSQLSVEDMVSQMRVQRNGIMV 260
Query: 61 QTKEQYILVHQAVKEL 76
Q EQ ++ + +
Sbjct: 261 QKDEQLDVLIKLAEGQ 276
>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
sapiens), 1B [TaxId: 9606]}
Length = 297
Score = 76.4 bits (187), Expect = 6e-19
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQT 62
+ E PV+VHCSAG GR+GT C D L+ K + ++ EMRK R+ ++QT
Sbjct: 203 LSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQT 262
Query: 63 KEQYILVHQAVKE 75
+Q + AV E
Sbjct: 263 ADQLRFSYLAVIE 275
>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 245
Score = 75.2 bits (184), Expect = 7e-19
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
P+ VHCSAG GRTGT CA+ V ++A +F V+ +R QR MVQT EQY
Sbjct: 178 PITVHCSAGAGRTGTFCALSTVLERVKA---EGILDVFQTVKSLRLQRPHMVQTLEQYEF 234
Query: 69 VHQAVKELFLE 79
++ V+E +++
Sbjct: 235 CYKVVQE-YID 244
>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus),
ptp-sl/br7 [TaxId: 10090]}
Length = 297
Score = 75.3 bits (184), Expect = 1e-18
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
PV+VHCSAG GRTG A L+ ++V ++R R MVQT EQY
Sbjct: 224 PVVVHCSAGIGRTGCFIATSIGCQQLKE---EGVVDALSIVCQLRVDRGGMVQTSEQYEF 280
Query: 69 VHQAVKELFLEQL 81
VH A+ F +L
Sbjct: 281 VHHALCL-FESRL 292
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 243
Score = 74.3 bits (182), Expect = 1e-18
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 5 SETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRI-AMVQTK 63
S+ ++HC G GRTGT+ A + K N +L + + R R M++
Sbjct: 176 SDKHLPMIHCLGGVGRTGTMAAALVL-------KDNPHSNLEQVRADFRDSRNNRMLEDA 228
Query: 64 EQYILVHQAVKELFL 78
Q++ + +L +
Sbjct: 229 SQFVQLKAMQAQLLM 243
>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 317
Score = 73.7 bits (180), Expect = 6e-18
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 2 IQASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQ 61
+ P++VHCSAG GRTG ID + ++ K ++ V MR QR MVQ
Sbjct: 204 CNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKH---EKTVDIYGHVTCMRSQRNYMVQ 260
Query: 62 TKEQYILVHQAVKE 75
T++QY+ +H+A+ E
Sbjct: 261 TEDQYVFIHEALLE 274
>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
T-cell [TaxId: 9606]}
Length = 273
Score = 71.4 bits (174), Expect = 3e-17
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
P ++HCSAG GR+GT +D L+ G D ++ ++ MRK R+ ++QT +Q
Sbjct: 207 PAVIHCSAGIGRSGTFSLVDTCLVLMEKGD---DINIKQVLLNMRKYRMGLIQTPDQLRF 263
Query: 69 VHQAVKE 75
+ A+ E
Sbjct: 264 SYMAIIE 270
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 57.8 bits (139), Expect = 1e-12
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
L+H G GR+ + A LL +R++R +QT +QY
Sbjct: 111 KTLIHSYGGLGRSCLVAACL----LLYLSDTISPEQAIDSLRDLRGSG--AIQTIKQYNY 164
Query: 69 VHQAVKEL 76
+H+ +L
Sbjct: 165 LHEFRDKL 172
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten
(Pten tumor suppressor), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 174
Score = 53.1 bits (127), Expect = 7e-11
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYIL 68
+HC AG GRTG + LL GK K E+R + V Q
Sbjct: 106 VAAIHCKAGKGRTGVMICAY----LLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRY 161
Query: 69 VH 70
V+
Sbjct: 162 VY 163
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 182
Score = 52.7 bits (126), Expect = 1e-10
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQ-YI 67
+ VH AG GRTGT+ A + + + + +R R V +Q ++
Sbjct: 111 AIAVHSKAGLGRTGTLIACYIMK--------HYRMTAAETIAWVRICRPGSVIGPQQQFL 162
Query: 68 LVHQAVKELFLEQLR 82
++ Q L + R
Sbjct: 163 VMKQTNLWLEGDYFR 177
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human
(Homo sapiens), pr-1 [TaxId: 9606]}
Length = 152
Score = 45.8 bits (108), Expect = 3e-08
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 15/83 (18%)
Query: 1 VIQASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMV 60
+ + VHC AG GR + A+ + V+ +R++R
Sbjct: 83 KFREEPGCCIAVHCVAGLGRAPVLVALAL---------IEGGMKYEDAVQFIRQKRRGAF 133
Query: 61 QTKEQYILVHQAVKELFLEQLRM 83
+ +Q + + + + ++R+
Sbjct: 134 NS-KQLLYLEK-----YRPKMRL 150
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate
phosphohydrolase (phytase) PhyA {Selenomonas ruminantium
[TaxId: 971]}
Length = 313
Score = 39.3 bits (91), Expect = 1e-05
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 17/104 (16%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAIDYVWG---------LLRAGKLNKDFSLFTLVREMR 53
+ + HC AG GRT + + L R ++ + ++
Sbjct: 208 TLPQDAWLHFHCEAGVGRTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFYYGEFPIKTKD 267
Query: 54 KQRIAMVQTKEQY---ILVHQAVKELFLEQLRM-----IDSHPL 89
K +E+ ++ V+E + + + SHP
Sbjct: 268 KDSWKTKYYREKIVMIEQFYRYVQENRADGYQTPWSVWLKSHPA 311
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 32.9 bits (74), Expect = 0.002
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 3 QASETLPVLVHCSAGCGRTGTICAI 27
+ PVL HC AG RTG + A+
Sbjct: 146 LLAAGRPVLTHCFAGKDRTGFVVAL 170
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 194
Score = 32.0 bits (72), Expect = 0.005
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 16/66 (24%)
Query: 9 PVLVHCSAGCGRTGTIC--------------AIDYVWGLLRAGKLNKDF--SLFTLVREM 52
+ VHC+ G RTG + A+ G D+ LF ++
Sbjct: 117 LIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDI 176
Query: 53 RKQRIA 58
+
Sbjct: 177 EEAPPP 182
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 151
Score = 29.4 bits (65), Expect = 0.030
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 1 VIQASETLPVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMV 60
V+ + PVL+HC G RTG + L + K ++ E ++ A
Sbjct: 86 VLLDEKNHPVLIHCKRGKHRTGCLVGC-----LRKLQKWCLT----SIFDEYQRFAAAKA 136
Query: 61 QTKEQYIL 68
+ +Q +
Sbjct: 137 RVSDQRFM 144
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 28.5 bits (62), Expect = 0.093
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSL---FT--LVREMRKQRIAMVQTK 63
P LV AG G+T I + + L+R FT REM+++ + K
Sbjct: 16 PCLVLAGAGSGKTRVI--TNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK 73
Query: 64 EQYILVHQAVKELFLEQLRMIDSH 87
E L+ L L+ ++ +
Sbjct: 74 EARGLMISTFHTLGLDIIKREYAA 97
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.2 bits (62), Expect = 0.11
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 9 PVLVHCSAGCGRTGTICA 26
VLVHC G R+ T+
Sbjct: 112 RVLVHCREGYSRSPTLVI 129
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 387
Score = 25.7 bits (56), Expect = 0.75
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 5 SETLPVLVHCSAGCGRTGTICAI 27
S V+VH S G RT + ++
Sbjct: 210 SGKTSVVVHSSDGWDRTAQLTSL 232
>d1h12a_ a.102.1.2 (A:) Endo-1,4-beta-xylanase {Pseudoalteromonas
haloplanktis [TaxId: 228]}
Length = 404
Score = 25.8 bits (56), Expect = 0.81
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 27 IDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQ 61
+ + LL A + F + +
Sbjct: 147 EYFAFALLNASARWGNSGEFNYYNDAITMLNTIKN 181
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1
[TaxId: 9606]}
Length = 145
Score = 23.9 bits (51), Expect = 2.5
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSLFTLVREMRKQR 56
VLVH AG R+ TIC Y+ ++ L ++++R
Sbjct: 83 RVLVHSQAGISRSATICLA-YLM-------QSRRVRLDEAFDFVKQRR 122
>d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c
{Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 240
Score = 23.4 bits (50), Expect = 5.1
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 8/67 (11%)
Query: 16 AGCGRTGTIC--------AIDYVWGLLRAGKLNKDFSLFTLVREMRKQRIAMVQTKEQYI 67
G GTIC WG + + + V ++ +
Sbjct: 70 GGISDWGTICGALYGAAATFSLFWGRKEVHPMVNELFRWYEVTKLPIFNPGDAAQGVKGD 129
Query: 68 LVHQAVK 74
L A
Sbjct: 130 LPMSASD 136
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 23.0 bits (48), Expect = 7.9
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 9 PVLVHCSAGCGRTGTICAIDYVWGLLRAGKLNKDFSL---FT--LVREMRKQRIA 58
P+L+ AG G+T + + L+ + L FT REMR +R+
Sbjct: 26 PLLIMAGAGSGKTRVL--THRIAYLMAEKHVAPWNILAITFTNKAAREMR-ERVQ 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.139 0.415
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,679
Number of extensions: 12414
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 36
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.6 bits)