BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5453
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 64 LDPDVSPDEQEEKARLISQVLELQNTLDDLSQR 96
PD +P+ +EE R QV E L D +R
Sbjct: 37 WHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 26.6 bits (57), Expect = 5.1, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS-ASSVFQS 130
E+ K++ ++++ LQN +D ++S K+ L LRS+ I L S A S F++
Sbjct: 60 EEYAKSKALAELQGLQNNFEDYVNALNSWKKTPLSLRSKRS--QDRIRELFSQAESHFRN 117
Query: 131 TSP 133
+ P
Sbjct: 118 SMP 120
>pdb|3MQC|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|C Chain C, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|D Chain D, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
Length = 121
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114
EKA+ +V EL+ + L+ ++ E RLR ENQVL
Sbjct: 65 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104
>pdb|3MQ7|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|I Chain I, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|J Chain J, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|K Chain K, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|L Chain L, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
Length = 121
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114
EKA+ +V EL+ + L+ ++ E RLR ENQVL
Sbjct: 65 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104
>pdb|3MQB|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|E Chain E, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|F Chain F, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
Length = 121
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114
EKA+ +V EL+ + L+ ++ E RLR ENQVL
Sbjct: 65 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104
>pdb|3NWH|A Chain A, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|B Chain B, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|C Chain C, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|D Chain D, Crystal Structure Of Bst2TETHERIN
Length = 112
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114
EKA+ +V EL+ + L+ ++ E RLR ENQVL
Sbjct: 65 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.305 0.125 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,037,397
Number of Sequences: 62578
Number of extensions: 80348
Number of successful extensions: 196
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 20
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 46 (22.3 bits)