Query psy5453
Match_columns 138
No_of_seqs 94 out of 96
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 17:56:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3650|consensus 100.0 2.3E-32 4.9E-37 205.2 11.2 114 8-138 4-120 (120)
2 PF10224 DUF2205: Predicted co 100.0 3.2E-32 7E-37 193.5 8.2 80 57-138 1-80 (80)
3 PF09457 RBD-FIP: FIP domain ; 94.4 0.12 2.6E-06 34.0 4.9 33 91-123 3-35 (48)
4 PF06156 DUF972: Protein of un 93.6 0.61 1.3E-05 34.7 7.9 47 77-123 11-57 (107)
5 PF06005 DUF904: Protein of un 92.2 1.2 2.6E-05 31.1 7.3 48 75-122 5-52 (72)
6 PF08172 CASP_C: CASP C termin 91.8 0.53 1.2E-05 39.4 6.1 45 72-116 84-128 (248)
7 PRK13169 DNA replication intia 91.5 1.1 2.5E-05 33.6 7.0 45 77-121 11-55 (110)
8 PF06005 DUF904: Protein of un 87.4 3.4 7.4E-05 28.8 6.5 39 78-116 15-53 (72)
9 PF05377 FlaC_arch: Flagella a 86.3 4 8.7E-05 27.7 6.1 41 83-123 2-42 (55)
10 PF06156 DUF972: Protein of un 86.2 5 0.00011 29.9 7.2 46 76-121 3-48 (107)
11 PF00170 bZIP_1: bZIP transcri 86.2 3.7 8.1E-05 26.9 5.9 37 78-114 23-59 (64)
12 PF04977 DivIC: Septum formati 85.6 5.9 0.00013 25.9 6.6 44 76-119 19-62 (80)
13 PF04977 DivIC: Septum formati 84.9 6.3 0.00014 25.7 6.5 44 80-123 16-62 (80)
14 KOG3119|consensus 82.5 26 0.00056 29.4 10.7 108 15-123 130-250 (269)
15 PF05010 TACC: Transforming ac 82.5 7.3 0.00016 32.1 7.3 50 73-122 75-124 (207)
16 PF11932 DUF3450: Protein of u 81.4 11 0.00023 30.7 7.8 49 73-121 34-82 (251)
17 PRK00888 ftsB cell division pr 81.1 7.3 0.00016 28.5 6.2 41 77-121 30-70 (105)
18 TIGR02449 conserved hypothetic 80.8 5.3 0.00012 27.8 5.1 46 78-123 11-56 (65)
19 PRK13169 DNA replication intia 80.4 7.5 0.00016 29.3 6.2 46 76-121 3-48 (110)
20 PF00170 bZIP_1: bZIP transcri 80.0 14 0.0003 24.1 7.2 32 90-121 28-59 (64)
21 KOG4343|consensus 79.3 5.3 0.00011 38.1 6.1 57 78-134 285-348 (655)
22 PF01166 TSC22: TSC-22/dip/bun 79.1 4.6 0.0001 27.9 4.3 28 90-117 16-43 (59)
23 COG3883 Uncharacterized protei 79.0 12 0.00025 32.3 7.6 49 73-121 44-92 (265)
24 KOG4643|consensus 78.7 8.5 0.00018 39.1 7.5 52 73-124 508-559 (1195)
25 PF08653 DASH_Dam1: DASH compl 78.3 11 0.00024 25.6 5.9 47 78-124 2-48 (58)
26 PRK00888 ftsB cell division pr 78.2 6.3 0.00014 28.9 5.1 35 89-123 28-62 (105)
27 COG3074 Uncharacterized protei 77.9 15 0.00032 26.6 6.7 44 78-121 8-51 (79)
28 PF12711 Kinesin-relat_1: Kine 76.8 12 0.00025 27.4 6.1 47 72-119 22-68 (86)
29 PRK10884 SH3 domain-containing 76.1 18 0.00038 29.6 7.6 25 95-119 132-156 (206)
30 COG2919 Septum formation initi 73.5 15 0.00033 27.1 6.2 46 72-121 48-93 (117)
31 smart00338 BRLZ basic region l 72.7 24 0.00051 23.1 6.7 35 81-115 26-60 (65)
32 PHA00489 scaffolding protein 72.6 13 0.00028 28.1 5.5 56 71-135 20-75 (101)
33 TIGR02894 DNA_bind_RsfA transc 72.2 23 0.0005 28.6 7.2 45 78-122 101-145 (161)
34 PF07716 bZIP_2: Basic region 71.8 10 0.00022 24.3 4.2 27 95-121 25-51 (54)
35 smart00338 BRLZ basic region l 71.4 18 0.00038 23.6 5.5 35 88-122 26-60 (65)
36 PF14197 Cep57_CLD_2: Centroso 71.2 29 0.00063 23.9 6.7 34 78-111 2-35 (69)
37 PF04999 FtsL: Cell division p 71.1 13 0.00029 25.8 5.1 40 88-127 35-74 (97)
38 PF01517 HDV_ag: Hepatitis del 70.2 24 0.00052 29.2 7.0 51 71-121 8-58 (194)
39 PF04000 Sas10_Utp3: Sas10/Utp 69.8 15 0.00032 24.3 4.9 45 78-122 4-55 (85)
40 PF11559 ADIP: Afadin- and alp 68.0 46 0.00099 24.9 7.7 53 71-123 49-101 (151)
41 PF02183 HALZ: Homeobox associ 68.0 19 0.00041 23.1 4.9 30 92-121 9-38 (45)
42 PF09304 Cortex-I_coil: Cortex 67.4 17 0.00037 27.7 5.2 52 74-125 2-53 (107)
43 PF13094 CENP-Q: CENP-Q, a CEN 67.0 35 0.00076 25.9 7.0 45 77-121 23-67 (160)
44 TIGR03752 conj_TIGR03752 integ 66.6 11 0.00023 34.9 4.8 30 79-108 64-93 (472)
45 TIGR02209 ftsL_broad cell divi 66.5 33 0.00071 23.0 6.1 38 85-122 28-67 (85)
46 PRK10884 SH3 domain-containing 65.9 36 0.00077 27.8 7.3 31 86-116 137-167 (206)
47 PF13863 DUF4200: Domain of un 65.3 47 0.001 23.7 7.6 52 74-129 74-125 (126)
48 PF13815 Dzip-like_N: Iguana/D 64.8 35 0.00076 25.0 6.4 34 86-119 78-111 (118)
49 smart00150 SPEC Spectrin repea 64.5 29 0.00064 22.1 5.4 48 72-119 29-76 (101)
50 PF13870 DUF4201: Domain of un 64.4 40 0.00087 25.9 7.0 46 74-119 91-136 (177)
51 PF07888 CALCOCO1: Calcium bin 63.7 29 0.00062 32.8 7.0 50 72-121 390-450 (546)
52 PHA02557 22 prohead core prote 62.8 20 0.00043 31.2 5.5 39 88-126 141-179 (271)
53 PRK10803 tol-pal system protei 62.5 33 0.00072 28.5 6.6 43 81-123 61-103 (263)
54 PRK13729 conjugal transfer pil 61.8 28 0.0006 32.4 6.5 45 77-121 79-123 (475)
55 PF10226 DUF2216: Uncharacteri 61.2 37 0.0008 28.3 6.6 31 88-118 48-78 (195)
56 PRK14011 prefoldin subunit alp 60.9 62 0.0014 25.2 7.5 51 70-123 84-134 (144)
57 PF04102 SlyX: SlyX; InterPro 60.9 49 0.0011 22.4 6.2 48 77-124 7-54 (69)
58 PF02183 HALZ: Homeobox associ 60.8 41 0.0009 21.5 5.8 40 79-118 3-42 (45)
59 PF05400 FliT: Flagellar prote 60.4 44 0.00095 21.7 6.8 48 70-117 36-84 (84)
60 KOG0447|consensus 60.2 27 0.00058 34.4 6.3 44 72-118 224-267 (980)
61 PF02262 Cbl_N: CBL proto-onco 59.1 15 0.00033 28.8 3.8 18 108-125 63-80 (130)
62 PRK15422 septal ring assembly 59.0 36 0.00078 24.7 5.4 33 78-110 8-40 (79)
63 PF09738 DUF2051: Double stran 57.7 56 0.0012 28.4 7.3 47 75-121 106-152 (302)
64 PF12732 YtxH: YtxH-like prote 57.4 56 0.0012 21.9 7.7 41 70-110 22-63 (74)
65 PF10883 DUF2681: Protein of u 57.1 18 0.00038 26.4 3.6 27 92-118 20-46 (87)
66 COG3074 Uncharacterized protei 56.7 74 0.0016 23.1 7.4 37 86-122 37-73 (79)
67 PRK15422 septal ring assembly 56.5 75 0.0016 23.1 7.0 42 80-121 24-72 (79)
68 PF15070 GOLGA2L5: Putative go 56.2 39 0.00086 31.9 6.6 46 74-119 414-459 (617)
69 PF07412 Geminin: Geminin; In 55.3 50 0.0011 27.5 6.4 25 92-116 129-153 (200)
70 PRK13922 rod shape-determining 54.7 69 0.0015 26.1 7.1 16 100-115 74-89 (276)
71 PF10205 KLRAQ: Predicted coil 54.1 84 0.0018 23.7 6.9 51 84-134 29-79 (102)
72 PF10211 Ax_dynein_light: Axon 54.0 69 0.0015 25.6 6.9 38 76-113 122-159 (189)
73 KOG3119|consensus 53.9 55 0.0012 27.5 6.5 30 79-108 220-249 (269)
74 PF07716 bZIP_2: Basic region 53.7 56 0.0012 20.8 5.8 26 90-115 27-52 (54)
75 TIGR02449 conserved hypothetic 52.1 78 0.0017 22.0 7.3 34 90-123 2-35 (65)
76 PF09789 DUF2353: Uncharacteri 51.2 72 0.0016 28.1 7.1 48 74-121 126-208 (319)
77 KOG4196|consensus 50.5 1.2E+02 0.0026 24.1 7.5 46 74-119 74-119 (135)
78 TIGR02894 DNA_bind_RsfA transc 49.8 1.1E+02 0.0024 24.7 7.4 46 74-119 104-149 (161)
79 PF10186 Atg14: UV radiation r 49.7 1.2E+02 0.0025 24.1 7.6 41 78-118 60-100 (302)
80 PF12644 DUF3782: Protein of u 49.5 59 0.0013 21.0 4.9 33 80-121 7-39 (64)
81 TIGR02209 ftsL_broad cell divi 49.4 53 0.0011 22.0 4.8 40 85-124 21-60 (85)
82 PF07568 HisKA_2: Histidine ki 49.0 52 0.0011 22.3 4.8 39 85-123 28-70 (76)
83 PF10211 Ax_dynein_light: Axon 48.8 85 0.0019 25.0 6.6 22 79-100 132-153 (189)
84 PF07106 TBPIP: Tat binding pr 47.9 1.2E+02 0.0025 23.2 7.0 47 81-127 93-141 (169)
85 KOG2685|consensus 46.7 95 0.0021 28.7 7.3 46 74-119 344-389 (421)
86 KOG4005|consensus 46.5 90 0.002 27.4 6.8 28 96-123 98-125 (292)
87 PRK09413 IS2 repressor TnpA; R 46.4 40 0.00087 24.5 4.1 26 93-118 76-101 (121)
88 KOG0999|consensus 45.7 66 0.0014 31.4 6.4 40 77-116 103-142 (772)
89 PF07106 TBPIP: Tat binding pr 45.5 1.2E+02 0.0027 23.0 6.8 52 72-123 70-123 (169)
90 PF10146 zf-C4H2: Zinc finger- 45.3 75 0.0016 26.5 6.0 38 84-121 4-41 (230)
91 PF05837 CENP-H: Centromere pr 44.8 1.2E+02 0.0026 22.0 6.6 42 82-123 4-45 (106)
92 PF15619 Lebercilin: Ciliary p 44.7 85 0.0018 25.4 6.1 40 80-119 11-54 (194)
93 PF05565 Sipho_Gp157: Siphovir 44.1 1.5E+02 0.0032 22.9 7.2 48 79-126 45-92 (162)
94 KOG4005|consensus 43.9 1.4E+02 0.003 26.2 7.6 35 85-119 94-135 (292)
95 TIGR00219 mreC rod shape-deter 43.8 89 0.0019 26.3 6.3 10 107-116 96-105 (283)
96 PF11382 DUF3186: Protein of u 43.3 70 0.0015 27.2 5.7 38 85-122 36-73 (308)
97 PF09730 BicD: Microtubule-ass 42.8 94 0.002 30.3 7.0 45 77-121 30-74 (717)
98 PF07888 CALCOCO1: Calcium bin 42.5 1.3E+02 0.0029 28.5 7.7 51 73-123 149-199 (546)
99 PF05667 DUF812: Protein of un 42.5 1.9E+02 0.0041 27.4 8.8 45 75-119 322-366 (594)
100 COG4467 Regulator of replicati 42.5 1.6E+02 0.0034 22.8 7.0 40 81-120 15-54 (114)
101 COG4026 Uncharacterized protei 42.3 1.2E+02 0.0026 26.5 7.0 33 84-116 152-184 (290)
102 cd07429 Cby_like Chibby, a nuc 41.3 55 0.0012 24.8 4.3 24 99-122 76-99 (108)
103 PRK03992 proteasome-activating 41.1 1.1E+02 0.0024 26.4 6.7 38 78-115 12-49 (389)
104 COG2919 Septum formation initi 41.0 76 0.0016 23.4 4.9 31 92-122 54-84 (117)
105 PF11932 DUF3450: Protein of u 40.5 2E+02 0.0043 23.3 7.8 44 79-122 33-76 (251)
106 KOG1785|consensus 39.8 21 0.00046 33.4 2.2 30 97-126 89-118 (563)
107 PF04156 IncA: IncA protein; 39.7 1.7E+02 0.0037 22.3 7.5 49 75-123 82-134 (191)
108 PRK10803 tol-pal system protei 39.6 1.4E+02 0.0031 24.7 6.9 47 77-123 43-89 (263)
109 PF10186 Atg14: UV radiation r 39.5 1.7E+02 0.0036 23.2 7.0 41 74-114 63-103 (302)
110 PF11830 DUF3350: Domain of un 39.5 47 0.001 22.8 3.3 28 88-115 29-56 (56)
111 KOG1854|consensus 39.3 59 0.0013 31.5 5.1 46 83-128 246-291 (657)
112 PF00435 Spectrin: Spectrin re 39.1 1E+02 0.0022 19.6 7.2 51 71-121 31-85 (105)
113 TIGR03752 conj_TIGR03752 integ 38.9 1.3E+02 0.0028 28.1 7.0 29 87-115 58-86 (472)
114 PF09602 PhaP_Bmeg: Polyhydrox 38.7 2.1E+02 0.0047 23.2 7.7 51 72-122 39-91 (165)
115 PF10018 Med4: Vitamin-D-recep 38.5 1.9E+02 0.004 22.8 7.1 41 79-120 7-47 (188)
116 PF14662 CCDC155: Coiled-coil 38.1 1.8E+02 0.0039 24.2 7.1 48 74-121 81-128 (193)
117 TIGR00219 mreC rod shape-deter 37.9 91 0.002 26.3 5.5 15 99-113 95-109 (283)
118 COG1730 GIM5 Predicted prefold 37.9 1.4E+02 0.003 23.5 6.1 33 76-108 103-135 (145)
119 PF01486 K-box: K-box region; 37.7 49 0.0011 23.3 3.3 28 95-122 12-39 (100)
120 PF13118 DUF3972: Protein of u 37.6 93 0.002 24.3 5.1 32 88-119 70-102 (126)
121 PF08172 CASP_C: CASP C termin 37.3 1E+02 0.0022 25.9 5.7 48 73-120 92-139 (248)
122 PF14645 Chibby: Chibby family 37.1 66 0.0014 24.2 4.1 21 96-116 79-99 (116)
123 PF05600 DUF773: Protein of un 37.1 84 0.0018 28.9 5.5 17 107-123 479-495 (507)
124 smart00806 AIP3 Actin interact 36.9 1.3E+02 0.0029 27.7 6.7 47 74-120 217-275 (426)
125 PRK13922 rod shape-determining 36.4 53 0.0011 26.8 3.8 37 76-116 71-107 (276)
126 smart00340 HALZ homeobox assoc 36.3 71 0.0015 21.0 3.6 25 99-123 9-33 (44)
127 PF13747 DUF4164: Domain of un 36.3 1.6E+02 0.0035 21.0 7.0 47 77-123 35-81 (89)
128 PF15254 CCDC14: Coiled-coil d 35.8 1E+02 0.0022 30.8 6.1 40 79-118 439-478 (861)
129 PF03528 Rabaptin: Rabaptin; 35.8 1.9E+02 0.004 21.9 6.3 42 77-118 59-106 (106)
130 KOG4460|consensus 35.6 1.4E+02 0.0031 29.1 6.9 44 76-119 583-626 (741)
131 PF06810 Phage_GP20: Phage min 35.6 2.1E+02 0.0046 22.2 7.5 40 73-112 26-68 (155)
132 PRK11637 AmiB activator; Provi 35.5 2.3E+02 0.0051 24.7 7.8 34 89-122 220-253 (428)
133 PF00261 Tropomyosin: Tropomyo 35.4 2.2E+02 0.0048 23.0 7.2 45 77-121 172-216 (237)
134 PF11418 Scaffolding_pro: Phi2 34.8 2E+02 0.0043 21.7 6.8 43 71-116 19-61 (97)
135 PF05010 TACC: Transforming ac 34.5 2.6E+02 0.0057 23.0 7.8 49 76-124 156-204 (207)
136 PF10458 Val_tRNA-synt_C: Valy 34.2 1.4E+02 0.003 19.7 7.9 48 74-121 4-65 (66)
137 COG4026 Uncharacterized protei 34.1 2.2E+02 0.0048 24.9 7.3 34 75-108 150-183 (290)
138 PF01166 TSC22: TSC-22/dip/bun 34.0 53 0.0011 22.8 2.9 29 81-109 14-42 (59)
139 PF05812 Herpes_BLRF2: Herpesv 33.8 68 0.0015 24.8 3.8 25 97-121 5-29 (118)
140 KOG4797|consensus 33.8 1.7E+02 0.0037 22.9 5.9 32 87-118 66-97 (123)
141 PF05130 FlgN: FlgN protein; 33.3 1.6E+02 0.0035 20.3 6.9 22 73-94 43-64 (143)
142 PF04111 APG6: Autophagy prote 33.2 3.1E+02 0.0067 23.6 8.0 32 77-108 60-91 (314)
143 PF04943 Pox_F11: Poxvirus F11 32.7 1.5E+02 0.0034 26.8 6.4 56 70-125 286-343 (366)
144 PF14197 Cep57_CLD_2: Centroso 32.5 1.7E+02 0.0036 20.1 6.3 27 93-119 38-64 (69)
145 PF09728 Taxilin: Myosin-like 32.2 78 0.0017 27.2 4.3 39 84-122 110-148 (309)
146 PF09726 Macoilin: Transmembra 32.2 1.9E+02 0.0042 27.8 7.3 52 73-124 417-482 (697)
147 PF05700 BCAS2: Breast carcino 32.1 2.4E+02 0.0052 22.8 6.9 32 84-115 178-209 (221)
148 PF10359 Fmp27_WPPW: RNA pol I 32.1 2.2E+02 0.0048 25.7 7.3 48 76-123 172-228 (475)
149 PF02370 M: M protein repeat; 31.9 60 0.0013 18.3 2.4 16 99-114 5-20 (21)
150 COG3883 Uncharacterized protei 31.7 2.2E+02 0.0047 24.7 6.8 40 79-118 43-82 (265)
151 PF06632 XRCC4: DNA double-str 31.3 1.9E+02 0.0042 25.5 6.7 31 92-122 141-171 (342)
152 KOG0161|consensus 30.9 2E+02 0.0044 31.3 7.7 51 74-124 1456-1506(1930)
153 PF06103 DUF948: Bacterial pro 30.6 1.8E+02 0.0039 19.9 6.8 36 84-119 22-57 (90)
154 PF10046 BLOC1_2: Biogenesis o 30.6 2E+02 0.0044 20.5 7.0 42 80-121 51-92 (99)
155 PF03915 AIP3: Actin interacti 30.5 3.2E+02 0.0069 25.0 8.0 45 77-121 216-272 (424)
156 PF03993 DUF349: Domain of Unk 30.5 74 0.0016 20.6 3.1 20 72-91 32-51 (77)
157 PF05266 DUF724: Protein of un 30.4 2.9E+02 0.0063 22.3 7.6 43 79-121 136-178 (190)
158 TIGR01242 26Sp45 26S proteasom 30.3 1.7E+02 0.0036 24.7 5.9 36 75-110 7-42 (364)
159 PF07412 Geminin: Geminin; In 30.0 1.7E+02 0.0036 24.5 5.7 51 73-123 113-170 (200)
160 PF04136 Sec34: Sec34-like fam 29.9 2.6E+02 0.0057 21.6 7.2 45 79-123 26-70 (157)
161 PHA03155 hypothetical protein; 29.8 76 0.0016 24.5 3.4 23 97-119 10-32 (115)
162 PF13093 FTA4: Kinetochore com 29.8 1.5E+02 0.0032 24.4 5.3 63 39-107 113-175 (213)
163 PF15619 Lebercilin: Ciliary p 29.8 3E+02 0.0065 22.2 7.2 51 72-122 66-118 (194)
164 PF09798 LCD1: DNA damage chec 29.8 2.9E+02 0.0062 26.8 7.9 46 75-123 16-61 (654)
165 PF10212 TTKRSYEDQ: Predicted 29.7 2.6E+02 0.0056 26.5 7.5 51 71-121 299-353 (518)
166 TIGR01554 major_cap_HK97 phage 29.5 3.3E+02 0.0072 23.1 7.6 6 105-110 44-49 (378)
167 PF10168 Nup88: Nuclear pore c 29.1 2.5E+02 0.0055 27.1 7.5 47 75-121 559-605 (717)
168 KOG1962|consensus 28.8 2.2E+02 0.0047 24.0 6.3 47 73-119 157-210 (216)
169 PF12795 MscS_porin: Mechanose 28.5 3E+02 0.0065 22.1 6.9 48 74-121 157-204 (240)
170 PF00038 Filament: Intermediat 28.4 3.3E+02 0.0071 22.2 7.8 48 73-120 67-114 (312)
171 KOG2991|consensus 28.4 1.3E+02 0.0027 26.9 5.0 41 81-121 271-311 (330)
172 PF08285 DPM3: Dolichol-phosph 28.3 87 0.0019 22.7 3.4 22 71-92 65-86 (91)
173 smart00787 Spc7 Spc7 kinetocho 28.2 2.1E+02 0.0045 24.8 6.3 47 77-123 147-193 (312)
174 PF07558 Shugoshin_N: Shugoshi 28.1 59 0.0013 20.7 2.2 28 91-118 17-44 (46)
175 PF06632 XRCC4: DNA double-str 27.9 3.2E+02 0.0069 24.2 7.4 35 88-122 130-164 (342)
176 PF05529 Bap31: B-cell recepto 27.5 1.8E+02 0.0039 22.5 5.3 30 92-121 158-187 (192)
177 KOG0995|consensus 27.5 2.1E+02 0.0046 27.5 6.6 49 71-119 263-325 (581)
178 COG4467 Regulator of replicati 27.5 2.3E+02 0.005 21.9 5.7 46 76-121 3-48 (114)
179 PTZ00454 26S protease regulato 27.4 3.6E+02 0.0078 23.8 7.7 47 79-125 20-66 (398)
180 PRK15202 type III secretion ch 27.4 33 0.00071 26.6 1.1 16 14-29 14-29 (117)
181 PF07544 Med9: RNA polymerase 27.4 91 0.002 21.8 3.3 40 83-122 40-79 (83)
182 PF12999 PRKCSH-like: Glucosid 27.4 1.6E+02 0.0034 24.0 5.1 47 72-118 123-169 (176)
183 PF14775 NYD-SP28_assoc: Sperm 27.3 1.6E+02 0.0035 19.7 4.3 27 92-119 31-57 (60)
184 COG5124 Protein predicted to b 27.3 1.5E+02 0.0031 25.1 4.9 33 89-121 76-108 (209)
185 PF10174 Cast: RIM-binding pro 27.2 2.7E+02 0.0059 27.4 7.4 45 74-118 121-165 (775)
186 KOG3863|consensus 27.2 2.4E+02 0.0051 27.3 6.9 62 72-133 523-588 (604)
187 PLN02943 aminoacyl-tRNA ligase 27.0 3E+02 0.0065 27.2 7.7 53 71-123 886-949 (958)
188 PF12325 TMF_TATA_bd: TATA ele 26.7 2.8E+02 0.0062 21.0 6.8 39 79-117 28-66 (120)
189 PF07200 Mod_r: Modifier of ru 26.7 2.7E+02 0.0057 20.6 7.2 46 78-123 45-90 (150)
190 PF12004 DUF3498: Domain of un 26.7 21 0.00047 33.1 0.0 45 77-121 372-417 (495)
191 KOG0239|consensus 26.6 2.9E+02 0.0063 26.6 7.4 45 79-123 239-283 (670)
192 PHA03162 hypothetical protein; 26.3 93 0.002 24.7 3.5 23 97-119 15-37 (135)
193 PF09311 Rab5-bind: Rabaptin-l 26.3 45 0.00097 26.2 1.7 33 84-116 11-43 (181)
194 PTZ00454 26S protease regulato 26.2 2.7E+02 0.0058 24.6 6.7 41 76-116 24-64 (398)
195 PRK14163 heat shock protein Gr 26.1 3.9E+02 0.0084 22.3 7.4 32 77-108 43-74 (214)
196 KOG4196|consensus 25.9 2.4E+02 0.0051 22.4 5.6 37 85-121 78-114 (135)
197 PF04111 APG6: Autophagy prote 25.8 4.3E+02 0.0093 22.7 7.7 40 77-116 46-85 (314)
198 KOG4398|consensus 25.8 2.6E+02 0.0056 25.2 6.5 47 73-119 18-64 (359)
199 PF12352 V-SNARE_C: Snare regi 25.7 1.9E+02 0.0041 18.5 5.6 40 77-116 1-40 (66)
200 PF04728 LPP: Lipoprotein leuc 25.6 2.2E+02 0.0048 19.3 7.4 46 77-122 6-51 (56)
201 PF11853 DUF3373: Protein of u 25.2 49 0.0011 30.9 2.0 28 75-102 32-59 (489)
202 PF10481 CENP-F_N: Cenp-F N-te 25.2 1.5E+02 0.0033 26.3 4.9 41 83-123 41-81 (307)
203 COG1186 PrfB Protein chain rel 25.0 4.2E+02 0.0091 22.7 7.4 102 12-121 94-196 (239)
204 KOG0995|consensus 25.0 3.5E+02 0.0076 26.1 7.5 35 89-123 253-287 (581)
205 PF01763 Herpes_UL6: Herpesvir 25.0 4.8E+02 0.01 24.9 8.4 77 40-121 326-403 (557)
206 PRK13182 racA polar chromosome 25.0 3.6E+02 0.0078 21.5 8.1 49 72-120 90-143 (175)
207 PF15294 Leu_zip: Leucine zipp 24.8 3.6E+02 0.0077 23.5 7.0 47 77-123 128-174 (278)
208 PF14584 DUF4446: Protein of u 24.6 1.8E+02 0.0039 22.7 4.8 35 85-119 43-77 (151)
209 PTZ00419 valyl-tRNA synthetase 24.3 3.9E+02 0.0084 26.4 7.9 53 71-123 926-989 (995)
210 PF14988 DUF4515: Domain of un 24.2 3E+02 0.0064 22.4 6.2 38 79-116 161-198 (206)
211 COG3879 Uncharacterized protei 24.0 3.6E+02 0.0079 23.2 6.9 31 78-108 54-84 (247)
212 KOG2483|consensus 24.0 2.8E+02 0.006 23.4 6.1 42 77-121 97-138 (232)
213 PF08654 DASH_Dad2: DASH compl 23.9 3E+02 0.0066 20.3 7.5 47 75-121 8-54 (103)
214 PF15188 CCDC-167: Coiled-coil 23.9 1.7E+02 0.0036 21.3 4.2 35 71-112 33-67 (85)
215 PF09304 Cortex-I_coil: Cortex 23.8 3.3E+02 0.0072 20.7 6.2 12 81-92 16-27 (107)
216 PF14257 DUF4349: Domain of un 23.8 2.1E+02 0.0045 23.2 5.2 27 92-118 166-192 (262)
217 KOG4841|consensus 23.7 1E+02 0.0023 23.1 3.1 22 70-91 68-89 (95)
218 TIGR03687 pupylate_cterm ubiqu 23.4 1.5E+02 0.0033 18.4 3.3 27 87-118 2-28 (33)
219 KOG2662|consensus 22.8 1.8E+02 0.004 26.8 5.1 40 80-119 219-259 (414)
220 PF07407 Seadorna_VP6: Seadorn 22.8 1.1E+02 0.0024 28.1 3.6 34 94-127 31-67 (420)
221 PF06785 UPF0242: Uncharacteri 22.7 3.5E+02 0.0075 24.9 6.7 16 105-120 137-152 (401)
222 KOG3335|consensus 22.6 1.9E+02 0.0041 24.0 4.7 39 75-113 100-139 (181)
223 KOG2689|consensus 22.5 3.6E+02 0.0079 23.9 6.7 46 38-83 50-96 (290)
224 PF14662 CCDC155: Coiled-coil 22.2 3.6E+02 0.0077 22.5 6.3 44 75-118 96-139 (193)
225 PRK05771 V-type ATP synthase s 22.0 2.6E+02 0.0056 25.9 6.0 33 89-121 94-126 (646)
226 PF03148 Tektin: Tektin family 22.0 4.7E+02 0.01 22.9 7.4 45 75-119 318-362 (384)
227 COG1842 PspA Phage shock prote 21.9 4.6E+02 0.01 21.7 7.6 53 72-124 90-142 (225)
228 PF09763 Sec3_C: Exocyst compl 21.9 2.5E+02 0.0054 26.2 5.9 44 77-120 40-83 (701)
229 PF14131 DUF4298: Domain of un 21.7 3E+02 0.0065 19.5 5.3 34 76-109 5-38 (90)
230 PF04871 Uso1_p115_C: Uso1 / p 21.7 3.7E+02 0.008 20.5 7.4 34 89-122 56-90 (136)
231 PF08941 USP8_interact: USP8 i 21.5 31 0.00067 28.4 0.0 42 81-129 11-52 (179)
232 PF08961 DUF1875: Domain of un 21.2 32 0.00069 29.6 0.0 34 81-114 129-162 (243)
233 KOG4797|consensus 21.1 2.8E+02 0.006 21.7 5.1 43 80-122 66-110 (123)
234 PF13600 DUF4140: N-terminal d 20.9 2.7E+02 0.0059 19.3 4.7 33 73-105 69-101 (104)
235 PF13815 Dzip-like_N: Iguana/D 20.8 3.4E+02 0.0074 19.8 6.8 41 76-116 75-115 (118)
236 COG1340 Uncharacterized archae 20.7 4.2E+02 0.0091 23.3 6.7 51 79-129 53-103 (294)
237 PRK02119 hypothetical protein; 20.7 3E+02 0.0064 19.0 7.0 45 77-121 12-56 (73)
238 PF01486 K-box: K-box region; 20.6 2.1E+02 0.0045 20.1 4.1 26 93-118 73-98 (100)
239 COG3880 Modulator of heat shoc 20.3 2.3E+02 0.005 23.4 4.7 36 76-111 131-171 (176)
240 PF11598 COMP: Cartilage oligo 20.3 2.6E+02 0.0056 18.1 5.5 30 78-107 5-34 (45)
241 PF14244 UBN2_3: gag-polypepti 20.2 2.1E+02 0.0045 21.1 4.2 39 85-123 90-130 (152)
242 PHA02682 ORF080 virion core pr 20.0 5.8E+02 0.013 22.1 8.2 84 47-130 180-264 (280)
No 1
>KOG3650|consensus
Probab=99.98 E-value=2.3e-32 Score=205.25 Aligned_cols=114 Identities=65% Similarity=0.783 Sum_probs=97.6
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCCCCCCCCccCCccccccccccCCCCCCCC--CCCCC-CCCcchHHHHHHHHHHHH
Q psy5453 8 SEDINNIPLADDDPQAIISDEVESSQNSEGPIRADHSLDSISSSFTNSSSSPGR--NSLDP-DVSPDEQEEKARLISQVL 84 (138)
Q Consensus 8 ~~~~~~i~~~~d~p~v~i~~~~~~~~~~~~~~~~~rs~ds~~s~f~~~a~SP~~--~s~d~-e~~~~~~eeKe~Li~eil 84 (138)
..+.++||++|+|++|.|.-.+ .|..|| |+++..|-. +..+. |......|+|.+||.|++
T Consensus 4 k~e~ddipl~d~d~~v~I~~sg--------r~~~gr---------tprs~~P~~~~~~l~a~e~~~d~~EEKaRlItQVL 66 (120)
T KOG3650|consen 4 KEEEDDIPLTDIDLAVDIDHSG--------RILYGR---------TPRSLLPKMMNADLDAVEAENDVEEEKARLITQVL 66 (120)
T ss_pred ccccccCcccCCCccccccccc--------cccCCC---------CccccCcccccccccccccccChHHHHHHHHHHHH
Confidence 4577899999999999997443 666677 666666722 33443 444566699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccccCCCCCCCC
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKSGKK 138 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqst~~~~kk~ 138 (138)
+||+||++|.+||+.||+|+.||++|||+|++||+|||++|+|||+|+++.|||
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQst~ps~~kk 120 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTDPSSKKK 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhcCCCccccC
Confidence 999999999999999999999999999999999999999999999999999987
No 2
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=99.97 E-value=3.2e-32 Score=193.48 Aligned_cols=80 Identities=64% Similarity=0.807 Sum_probs=78.0
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccccCCCCCC
Q psy5453 57 SSPGRNSLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKSG 136 (138)
Q Consensus 57 ~SP~~~s~d~e~~~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqst~~~~k 136 (138)
|||++++.|.+ ..+.++|++||+||++||++|++||+||++||+||+||++||+|||+||+|||++|+||+++++++|
T Consensus 1 msp~~~~~d~e--~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~s~~~~~~ 78 (80)
T PF10224_consen 1 MSPRRNSEDIE--KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQSTSPKSK 78 (80)
T ss_pred CCCCCchHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccc
Confidence 89999999998 8999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q psy5453 137 KK 138 (138)
Q Consensus 137 k~ 138 (138)
+|
T Consensus 79 ~~ 80 (80)
T PF10224_consen 79 KK 80 (80)
T ss_pred CC
Confidence 76
No 3
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=94.44 E-value=0.12 Score=34.01 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 91 DDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 91 ~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+.|..-+...++++.+.+..-+-|++||++|..
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~ 35 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLV 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777789999999953
No 4
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.57 E-value=0.61 Score=34.70 Aligned_cols=47 Identities=34% Similarity=0.481 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
..|-+++..|.+.|..|-..|.++-+||..|+-||+-|.+-+..+-.
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888889999999999999999999988866
No 5
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.22 E-value=1.2 Score=31.12 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.=++|-..|..+=+++..|-.+|++.|+++..|..+|.-|.....-|-
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 335677777777788888888888888887777777777766665553
No 6
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=91.77 E-value=0.53 Score=39.38 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
=..+|++.-+...+|.+-|..+.+.+...+.|.++|+++|--|=+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999965544
No 7
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=91.48 E-value=1.1 Score=33.64 Aligned_cols=45 Identities=31% Similarity=0.364 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
..|-+++..|...|..|-..|.++-+||..|+-||+-|..-++.+
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788899999999999999999999999999999999999987
No 8
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.44 E-value=3.4 Score=28.82 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
.++..|..||.-+..|-.+..+.++++..|+.||+-|++
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456666777777777777766666666666666666653
No 9
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=86.28 E-value=4 Score=27.69 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+.+|.+-|..+..-|..||.|++.|+.+.+-+.+=|..||+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999986
No 10
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.22 E-value=5 Score=29.85 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
|..|...+..|.+.|..|...|.++|.....|-.||..|+.=-.+|
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999998766665
No 11
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.15 E-value=3.7 Score=26.89 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L 114 (138)
+=...+..|++.+..|....+..+.++..|..++.-|
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555444444444444444444444443
No 12
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=85.60 E-value=5.9 Score=25.89 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
...+-+++..|+..+..+-.+.+..+.+.++|++.-.++.++..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455666666666666666666666666666556666666655
No 13
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.90 E-value=6.3 Score=25.74 Aligned_cols=44 Identities=27% Similarity=0.495 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH---HHHHHHHhh
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL---GQYIENLMS 123 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L---q~YI~NLMs 123 (138)
+.++..++..+..|-.+++..+.++++|+.+=+.| .+||+-+-+
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455666666666666666666666666666666 456655543
No 14
>KOG3119|consensus
Probab=82.51 E-value=26 Score=29.43 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=61.9
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCccCCcccc-ccccccCCCCCCCCCCC-----CCCCCcchHHHHHHHHHHHHHHHH
Q psy5453 15 PLADDDPQAIISDEVESSQNSEGPIRADHSLDS-ISSSFTNSSSSPGRNSL-----DPDVSPDEQEEKARLISQVLELQN 88 (138)
Q Consensus 15 ~~~~d~p~v~i~~~~~~~~~~~~~~~~~rs~ds-~~s~f~~~a~SP~~~s~-----d~e~~~~~~eeKe~Li~eil~LQ~ 88 (138)
|++-|..++.+.-. ..+.+..++...+++... -...|+...+.|..... -......+.+.+++.-+.-.+++.
T Consensus 130 P~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~K~~~~~~~~~~~~~~y~err~rNN~A~~k 208 (269)
T KOG3119|consen 130 PVPPDTLQPLVGYE-PDPSDLAASSSPSPSSPDPSKPKSSGAKLKPQSTARKKSKLSSPVEKKDPEYKERRRRNNEAVRK 208 (269)
T ss_pred CCChhhccccccCC-CCccccccccCCCCCCCCCCCCCCcccccCCccchhhhccCCCchhcCCHHHHHHHHhhhHHHHH
Confidence 56666667666666 445555555555554332 23345554555522111 112234566666665555544444
Q ss_pred H-------HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 89 T-------LDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 89 s-------L~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+ .+.++.||.....|++.|+.+.+.|++=+..|-.
T Consensus 209 SR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 209 SRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3567788888888888888888777777777644
No 15
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.48 E-value=7.3 Score=32.07 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
..+|+.+..+.-.+..++.+|+.|.+.+|+....++.+=+.|..+|..++
T Consensus 75 ~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~ 124 (207)
T PF05010_consen 75 LKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYE 124 (207)
T ss_pred HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999998777777666554
No 16
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.37 E-value=11 Score=30.66 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.....+..+++..+++.=..|..++..++.+.+.|+..|+.|+.||.++
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q 82 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQ 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777888888888899999999999999999999998876
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.14 E-value=7.3 Score=28.55 Aligned_cols=41 Identities=29% Similarity=0.214 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.++.+++.+++..+..|-.+....+.|.+.|++.- +||+.+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~----dyiEe~ 70 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ----EAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH----HHHHHH
Confidence 33444444444444444444444444444444321 477766
No 18
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=80.80 E-value=5.3 Score=27.75 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+||.....|+..=..|-.++...+.|...|..-|+.=..=|+-|++
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555543
No 19
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.39 E-value=7.5 Score=29.28 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
|..|...+..|...|..|...+.+.|.....|-.||..|+-==.+|
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999998655555
No 20
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.98 E-value=14 Score=24.13 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+..|-.+|.....++..|..++..|..=+..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555544444444443
No 21
>KOG4343|consensus
Probab=79.26 E-value=5.3 Score=38.10 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=46.0
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccccCCCC
Q psy5453 78 RLISQVLEL-------QNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPK 134 (138)
Q Consensus 78 ~Li~eil~L-------Q~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqst~~~ 134 (138)
++|+--... .+-+..|-.|+.++-.||+.|+.||-.|.+-|.-|.+-..+..-++++
T Consensus 285 RmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~ 348 (655)
T KOG4343|consen 285 RMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPK 348 (655)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCc
Confidence 677544333 355788889999999999999999999999999998877776666654
No 22
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.07 E-value=4.6 Score=27.94 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
.+-|-++|.+..+.+..|+.||.+|.+-
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677888888888999999988764
No 23
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.02 E-value=12 Score=32.28 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
..++..+..++..|+..+..+.+++++++++++++..|=+-|+.=|.-|
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456668888899999999999999999999999988888888777655
No 24
>KOG4643|consensus
Probab=78.66 E-value=8.5 Score=39.06 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
...+.+|..|.+.++-++..+-++.+...++.-.|+.||.-|..-|.+||.+
T Consensus 508 ~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t 559 (1195)
T KOG4643|consen 508 HALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999874
No 25
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=78.32 E-value=11 Score=25.64 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
.|+.+..+|-+++..|-.++...+.-|+.|..=|+-...|+-.|+-+
T Consensus 2 ~l~~~f~eL~D~~~~L~~n~~~L~~ihesL~~FNESFasfLYGl~mn 48 (58)
T PF08653_consen 2 FLEPQFAELSDSMETLDKNMEQLNQIHESLSDFNESFASFLYGLNMN 48 (58)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999654
No 26
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.19 E-value=6.3 Score=28.90 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.+..+-+++.+.+.++++|+.+|+.|..=|..|=.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35567778888888888888888888888887743
No 27
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.88 E-value=15 Score=26.65 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+|-..|+..=+|+..|-=.|++.|+.+..|.+|-+-+|.-+++|
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 34444444445555555556666666555555555555555554
No 28
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=76.82 E-value=12 Score=27.36 Aligned_cols=47 Identities=26% Similarity=0.368 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
..+++.+|.++|+.||+.++. =-+|-..-.||-.|..||+-|+.|-.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568899999999998874 45788888999999999999999873
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.10 E-value=18 Score=29.62 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 95 QRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
+.+.++++++.+|+.+.+.++.=++
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 30
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=73.53 E-value=15 Score=27.11 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+...-..+..++..++..+..|..+....+.+..+|+.+ .+||+-.
T Consensus 48 ~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg----~~~i~e~ 93 (117)
T COG2919 48 GAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG----RDYIEER 93 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHH
Confidence 344455677788888889999999999999999999888 6777654
No 31
>smart00338 BRLZ basic region leucin zipper.
Probab=72.71 E-value=24 Score=23.05 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
..+..|+..+..|.......+.++..|..||..|-
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554443
No 32
>PHA00489 scaffolding protein
Probab=72.61 E-value=13 Score=28.08 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccccCCCCC
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKS 135 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqst~~~~ 135 (138)
...++|..++++ ||.+.--....-.++-+-++||..||.-|+ .++|.+|+.-++..
T Consensus 20 l~~sErTeaLqq---lr~~ygSf~sEy~elT~a~eKl~aek~DLi------vsNskLFrqlg~tk 75 (101)
T PHA00489 20 LTESERTEALQQ---LRESYGSFHSEYEELTEALEKLTAEKEDLI------VSNSKLFRQLGPTK 75 (101)
T ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHHHHHcCCcc
Confidence 566677777665 566677777888999999999999999876 47788887666544
No 33
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=72.23 E-value=23 Score=28.62 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.+..+-..|+..+..|-++++..+.|+.+|.++...+++=-..|+
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777777777778888777777665555553
No 34
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=71.78 E-value=10 Score=24.28 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 95 QRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.++.....+...|+.+|..|+.-|..|
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555444
No 35
>smart00338 BRLZ basic region leucin zipper.
Probab=71.37 E-value=18 Score=23.64 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.-+..|-.+|.....++..|..+...|..-|..|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666655555553
No 36
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.18 E-value=29 Score=23.93 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSEN 111 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sEN 111 (138)
+|-.++..||.-|+-+..++.....++..|..|+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER 35 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRER 35 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777666665555555554
No 37
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=71.09 E-value=13 Score=25.78 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccc
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSV 127 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~v 127 (138)
..-..+...+...+.++++|..||+.|.-=+..|.+.+.|
T Consensus 35 ~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rI 74 (97)
T PF04999_consen 35 HQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRI 74 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3455677788999999999999999999888888765544
No 38
>PF01517 HDV_ag: Hepatitis delta virus delta antigen; InterPro: IPR002506 The Hepatitis delta virus (HDV) encodes a single protein, the hepatitis delta antigen (HDAg). The central region of this protein has been shown to bind RNA []. Several interactions are also mediated by a coiled-coil region at the N terminus of the protein [].; GO: 0003723 RNA binding, 0042025 host cell nucleus; PDB: 1A92_D 1BY0_A.
Probab=70.20 E-value=24 Score=29.21 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
..+--|+.++.++...+.-+..|-..+...++.+.||+.+|-.|+...+=|
T Consensus 8 k~r~gre~~le~wv~~rk~~eeler~lrk~~k~ikkled~npwlgni~gii 58 (194)
T PF01517_consen 8 KNRGGREEILEQWVSGRKKAEELERDLRKAKKKIKKLEDDNPWLGNIKGII 58 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhee
Confidence 445558899999999999999999999999999999999999998876654
No 39
>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []. It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].
Probab=69.77 E-value=15 Score=24.35 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHH-----HHhhhhHhHHHHHHHHh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDS--VKEENL-----RLRSENQVLGQYIENLM 122 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~--VKeE~~-----KL~sENq~Lq~YI~NLM 122 (138)
.|.+.+..+++.|..|.+++.. ..+... -++-.|+.|-.|+.|+.
T Consensus 4 ~l~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~ 55 (85)
T PF04000_consen 4 ELSESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLL 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHH
Confidence 4677788888999888888863 222222 56678999999999984
No 40
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.04 E-value=46 Score=24.86 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.+.+.++.|...+..++..+..|-..+...+..++.++.+...++.-...|-.
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888999999999999999999999999999988888877776643
No 41
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.97 E-value=19 Score=23.06 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.|-..-+.++.+++.|..||+-|+.=|..|
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555444443
No 42
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=67.36 E-value=17 Score=27.69 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcc
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSAS 125 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS 125 (138)
++|++|...-.++|+.|..|-.-++..|..++.|..++.-|..-..+|++.-
T Consensus 2 ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~ 53 (107)
T PF09304_consen 2 EEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQN 53 (107)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 5667777777778888888888888888888888777777777777776643
No 43
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=67.03 E-value=35 Score=25.86 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.|++....|...|.....-++..++|..+.+...+--..||..|
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~L 67 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQEL 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777778888888888888888888888888888777777777
No 44
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.63 E-value=11 Score=34.95 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
|+-+.++++.-|+.|...=+.+++||++|+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333333333333
No 45
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=66.47 E-value=33 Score=23.00 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHh
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLG--QYIENLM 122 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq--~YI~NLM 122 (138)
.++..+..+-.+++..+.|+++|+.|=..|. +||+.+-
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~A 67 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4444444455555555555555555544443 4555553
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.93 E-value=36 Score=27.83 Aligned_cols=31 Identities=6% Similarity=-0.026 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 86 LQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 86 LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
|+.....|-+.+...+.+++.|+.+|+.++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555553
No 47
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.32 E-value=47 Score=23.69 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccc
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQ 129 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfq 129 (138)
..+.....+|..|+..|..|-.++....+...++. .-..|+.++...|.-|+
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~----~Y~~fL~~v~~~~~ef~ 125 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK----KYEEFLEKVVPKSPEFQ 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcccccCcC
Confidence 34445566677777777776666666666655543 34455555555554454
No 48
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=64.77 E-value=35 Score=25.00 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 86 LQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 86 LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
|...+..|-.++.....++++|+..++-+.+=|.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555444444333
No 49
>smart00150 SPEC Spectrin repeats.
Probab=64.48 E-value=29 Score=22.15 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
+.+.=+.++++-..++..+...-.+|+.|.....+|...+..-..+|.
T Consensus 29 d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~ 76 (101)
T smart00150 29 DLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIE 76 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 445556688899999999999999999999999998775443333333
No 50
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=64.37 E-value=40 Score=25.88 Aligned_cols=46 Identities=30% Similarity=0.352 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.+-..+..++...+..+..+-..+..|+.+++++...|.-|+.=-|
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445677888888899999999999999999999999988764333
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.70 E-value=29 Score=32.76 Aligned_cols=50 Identities=30% Similarity=0.437 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQN-----------TLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~-----------sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+.++++|..++...++ -|..|=.-+.-++.|-++|..||+-|-+||.-|
T Consensus 390 er~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~L 450 (546)
T PF07888_consen 390 ERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERL 450 (546)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666655543333 333566666678889999999999999999998
No 52
>PHA02557 22 prohead core protein; Provisional
Probab=62.84 E-value=20 Score=31.20 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhccc
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASS 126 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~ 126 (138)
+.+..|-.++++.+.+..-|..+|.-|+.||+++.+..-
T Consensus 141 dvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i 179 (271)
T PHA02557 141 DVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVI 179 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888999999999999999999999999977543
No 53
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.55 E-value=33 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+++..||..+..|=..|++..-+.+++....+-|-.=|+++.+
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333333333333334455443
No 54
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.84 E-value=28 Score=32.36 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
++|.+++..|+..++.|.......++..++|++||+-|+.=++-+
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777777777778888888999999999998888543
No 55
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.15 E-value=37 Score=28.32 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
..|+..++.|..+|+.|.||..||+-|.+..
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778899999999999999999887654
No 56
>PRK14011 prefoldin subunit alpha; Provisional
Probab=60.90 E-value=62 Score=25.16 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 70 PDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
..-.++.+.+-+.+..|+.+++.|..++++...+.+.|..+ |+..+.-++.
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~---L~~k~~~~~~ 134 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE---LEKRAQAIEQ 134 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 56678889999999999999999999999999999999866 7777777754
No 57
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.89 E-value=49 Score=22.36 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
++|...+--+.++++.|-.-|-.+..+.++|+..-+.|.+=|..+...
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 346667777889999999999999999999999999999999998743
No 58
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.84 E-value=41 Score=21.50 Aligned_cols=40 Identities=35% Similarity=0.415 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
|-++--.|+...+.|...-+.++.|+++|.+|=.-|..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566678899999999999999999999999988887665
No 59
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=60.41 E-value=44 Score=21.66 Aligned_cols=48 Identities=35% Similarity=0.524 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 70 PDEQEEKARLISQVLELQNTLDDLS-QRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~~L~-~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
....++...++++|+.+...+..++ .|-++++.+.-++....+..+.|
T Consensus 36 ~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~~~~~aY 84 (84)
T PF05400_consen 36 PPEQEELRELLRRILELDQEIRALLQARRDELKQELRQLRKGRKANNAY 84 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777788999999888777665 46788999999999998888888
No 60
>KOG0447|consensus
Probab=60.18 E-value=27 Score=34.36 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
.+-.+..+..+|..||.-|. +---..+.|.++|+.||+.|.+|+
T Consensus 224 ~~K~~vs~~e~i~~LQeE~l---~tQ~kYQreLErlEKENkeLr~ll 267 (980)
T KOG0447|consen 224 QQKRKVSDKEKIDQLQEELL---HTQLKYQRILERLEKENKELRKLV 267 (980)
T ss_pred HHhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33344456677777776543 344567889999999999999886
No 61
>PF02262 Cbl_N: CBL proto-oncogene N-terminal domain 1; InterPro: IPR003153 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the N-terminal four-helical bundle domain.; GO: 0004871 signal transducer activity, 0007166 cell surface receptor linked signaling pathway, 0005634 nucleus; PDB: 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B 1B47_C 3BUO_D ....
Probab=59.09 E-value=15 Score=28.77 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.6
Q ss_pred hhhhHhHHHHHHHHhhcc
Q psy5453 108 RSENQVLGQYIENLMSAS 125 (138)
Q Consensus 108 ~sENq~Lq~YI~NLMssS 125 (138)
=++|+||+=||.|||+.+
T Consensus 63 l~~~~yl~i~l~NL~~K~ 80 (130)
T PF02262_consen 63 LGENDYLRIFLANLEAKC 80 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHH
Confidence 479999999999998754
No 62
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=58.99 E-value=36 Score=24.73 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSE 110 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sE 110 (138)
+|-..|...=+|...|=-.|++.|+.+..|..|
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555666666655544443
No 63
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=57.68 E-value=56 Score=28.40 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+|..|+-||..|++.|..|-.-+-..+.++.+.-.+=+.+..|+.-|
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777777777776666666666655555555555555544
No 64
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=57.37 E-value=56 Score=21.91 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q psy5453 70 PDEQEEKARLISQVLELQNTLDDLSQRVDS-VKEENLRLRSE 110 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~-VKeE~~KL~sE 110 (138)
..+.+.|++|-..+..+.+.+.++...+.+ +++..+.+..+
T Consensus 22 ~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 63 (74)
T PF12732_consen 22 KSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADE 63 (74)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999887 77776664433
No 65
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=57.12 E-value=18 Score=26.43 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
-++=|+...+++++||..||+.|+.=+
T Consensus 20 y~~~k~~ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 20 YLWWKVKKAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888999999999887644
No 66
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.67 E-value=74 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 86 LQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 86 LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
|++-...+-.-.++...|+++|++|-..-|+-|..|.
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455566666666666666777777764
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=56.47 E-value=75 Score=23.10 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHhHHHHHHHH
Q psy5453 80 ISQVLELQNTLDDLSQRVDS-------VKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~-------VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.-+|.+|...=..|.+.++. ...++.+|+.|-..-|+-|..|
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555 3344444444444445555555
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=56.17 E-value=39 Score=31.94 Aligned_cols=46 Identities=28% Similarity=0.552 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.+-++|...-+.+-.-.-+|..||+...-.|-+|..|+.+.++||-
T Consensus 414 ~amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ 459 (617)
T PF15070_consen 414 EAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYIT 459 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhc
Confidence 3445555555555555556667777777777788889999999995
No 69
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=55.27 E-value=50 Score=27.48 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
.|..+|+...+|+.+|+.||.-|..
T Consensus 129 ~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 129 KLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888875554
No 70
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=54.69 E-value=69 Score=26.07 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhhHhHH
Q psy5453 100 VKEENLRLRSENQVLG 115 (138)
Q Consensus 100 VKeE~~KL~sENq~Lq 115 (138)
+++||++|++||..|.
T Consensus 74 l~~en~~L~~e~~~l~ 89 (276)
T PRK13922 74 LREENEELKKELLELE 89 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 71
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=54.06 E-value=84 Score=23.67 Aligned_cols=51 Identities=27% Similarity=0.280 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccccCCCC
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPK 134 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqst~~~ 134 (138)
..|++.|..-=+.+.....|++-|.=.|+-|..=|..|+---.+-.+.+.+
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~~~k 79 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQKSKK 79 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 567777777777777788888888888888888888887654444333333
No 72
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.98 E-value=69 Score=25.56 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQV 113 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~ 113 (138)
+..|..++..|......|-.++.+++..++.++..++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777666665555543
No 73
>KOG3119|consensus
Probab=53.86 E-value=55 Score=27.52 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
+.+++..|-.....|-.+|+..+.|..+|+
T Consensus 220 ~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555556655555555554
No 74
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=53.71 E-value=56 Score=20.78 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
...|-.+|...+.+|..|..++..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555556666666666666554
No 75
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.11 E-value=78 Score=21.98 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
|..|-.||+..=..|.+|+.||..|.+-+..+.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666655543
No 76
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.15 E-value=72 Score=28.14 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=36.5
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHhhhhHhHHHHH
Q psy5453 74 EEKARLI-------SQVLELQNTLDDLSQRVDSVKEE----------------------------NLRLRSENQVLGQYI 118 (138)
Q Consensus 74 eeKe~Li-------~eil~LQ~sL~~L~~RVd~VKeE----------------------------~~KL~sENq~Lq~YI 118 (138)
.+|+.|| +++..||..|+++++-.+++..| .|.|=.||+||++=|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL 205 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence 5666666 45577888888888888777765 456778999999988
Q ss_pred HHH
Q psy5453 119 ENL 121 (138)
Q Consensus 119 ~NL 121 (138)
.++
T Consensus 206 ~q~ 208 (319)
T PF09789_consen 206 KQL 208 (319)
T ss_pred HHH
Confidence 877
No 77
>KOG4196|consensus
Probab=50.45 E-value=1.2e+02 Score=24.10 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.+|.+|.++-..|++.|+.|-..+..++.|.+-+++-=+-|+.++-
T Consensus 74 ~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 74 QQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566666666666666666666666666666655555555544
No 78
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.77 E-value=1.1e+02 Score=24.73 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.+.++|..+...||.-+..|-..+..+++++..++.+=+.|-.+|+
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555554
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.71 E-value=1.2e+02 Score=24.07 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
.+..++..++.-+..|-.+++.++++.++++..-.-++.++
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333333
No 80
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=49.47 E-value=59 Score=20.96 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+++..+++.|..+..+ -.+...+.|..||+.|
T Consensus 7 ~~~i~a~~e~l~~~~~~---------lt~e~~~~l~~~~~al 39 (64)
T PF12644_consen 7 EDEIMATKEELEELEER---------LTKEDKKRLEEYIDAL 39 (64)
T ss_pred HHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHH
Confidence 34666666666665444 2344566677777766
No 81
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=49.37 E-value=53 Score=21.97 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
..+.....+...+...+.+.++++.||.-|+.=|..|-+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 4456677888888888899999999999988888877653
No 82
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=49.02 E-value=52 Score=22.29 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH----hHHHHHHHHhh
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQ----VLGQYIENLMS 123 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq----~Lq~YI~NLMs 123 (138)
+.+..|.++.+||..+-.-|+.|-.... -|.+||+.|..
T Consensus 28 e~~~~L~~~~~RI~aia~vh~~L~~~~~~~~v~l~~yl~~L~~ 70 (76)
T PF07568_consen 28 EAREALEDAQNRIQAIALVHEQLYQSEDLSEVDLREYLEELCE 70 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeecHHHHHHHHHH
Confidence 4578899999999999999999987765 37777777754
No 83
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.76 E-value=85 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSV 100 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~V 100 (138)
|-.+...|+..+..|-.+.+.+
T Consensus 132 L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 132 LEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.88 E-value=1.2e+02 Score=23.17 Aligned_cols=47 Identities=30% Similarity=0.341 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhHhHHHHHHHHhhcccc
Q psy5453 81 SQVLELQNTLDDLSQRV--DSVKEENLRLRSENQVLGQYIENLMSASSV 127 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RV--d~VKeE~~KL~sENq~Lq~YI~NLMssS~v 127 (138)
.++..|+..|..|.... ++.+.....|+.|++.|..=+..|-++...
T Consensus 93 ~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 93 KEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33344444444444433 455667777778888888777777764443
No 85
>KOG2685|consensus
Probab=46.71 E-value=95 Score=28.66 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.++-+|+.++..|++++..|-+++++.+.....|..----|+.=|.
T Consensus 344 ~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 344 QAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999888777776443
No 86
>KOG4005|consensus
Probab=46.48 E-value=90 Score=27.38 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 96 RVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 96 RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.|.+.-+|+++|..||+-|+.-=.+||.
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~ 125 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLA 125 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555554444443
No 87
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=46.40 E-value=40 Score=24.50 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 93 LSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 93 L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
+-.++.+.+.++.+|+-||.+|.+=+
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777654
No 88
>KOG0999|consensus
Probab=45.70 E-value=66 Score=31.36 Aligned_cols=40 Identities=35% Similarity=0.512 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
+.+..+|+.||.-|.-+-+-+..|++|++.|.+.|+-|..
T Consensus 103 ~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e 142 (772)
T KOG0999|consen 103 EYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKE 142 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3478999999999999999999999999999998876654
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.48 E-value=1.2e+02 Score=23.03 Aligned_cols=52 Identities=37% Similarity=0.440 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHhHHHHHHHHhh
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSE--NQVLGQYIENLMS 123 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sE--Nq~Lq~YI~NLMs 123 (138)
+.++=..|-.++..|++.|..|-..+..++.|...|.+. |.-|...|.+|-.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~ 123 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEE 123 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 344555677778888888888888888888888888775 6778888888744
No 90
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.31 E-value=75 Score=26.47 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+++.-+..|--....+..+.+.+++|..+|++|-.-+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~ 41 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEM 41 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666777777788888888886543
No 91
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=44.82 E-value=1.2e+02 Score=22.04 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 82 QVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 82 eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.+..++.....+..++..|+.++..+...|+-|-.=|-.|.+
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~ 45 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAE 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888887777766654
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=44.66 E-value=85 Score=25.39 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh----HHHHHH
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQV----LGQYIE 119 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~----Lq~YI~ 119 (138)
..+|..|++.|.+|=.++++++.|+.=|+.=+.- |+.|.+
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~ 54 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYED 54 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888887777777665544 666644
No 93
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=44.12 E-value=1.5e+02 Score=22.93 Aligned_cols=48 Identities=13% Similarity=0.333 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhccc
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASS 126 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~ 126 (138)
+.+-|+.++....++-.++...++-...+++-.+.|.+|+-+.|....
T Consensus 45 ~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~g 92 (162)
T PF05565_consen 45 IAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAAG 92 (162)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445567777778888888888888888899999999999999998643
No 94
>KOG4005|consensus
Probab=43.92 E-value=1.4e+02 Score=26.25 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhhhHhHHHHHH
Q psy5453 85 ELQNTLDDLSQRVDSVKEENL-------RLRSENQVLGQYIE 119 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~-------KL~sENq~Lq~YI~ 119 (138)
++-+.+.+|.++-+..+.||+ .|-.+|+-|.+|++
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555555555555555554 55567778889988
No 95
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=43.81 E-value=89 Score=26.35 Aligned_cols=10 Identities=40% Similarity=0.518 Sum_probs=5.2
Q ss_pred HhhhhHhHHH
Q psy5453 107 LRSENQVLGQ 116 (138)
Q Consensus 107 L~sENq~Lq~ 116 (138)
|+.||+-|.+
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 96
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=43.29 E-value=70 Score=27.24 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.|.+.+..|-.+.++.+.+.+.++.++....+||..+-
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888888888888888888888773
No 97
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.84 E-value=94 Score=30.28 Aligned_cols=45 Identities=42% Similarity=0.523 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.|..+|.+||.-|..+-.-+..++.|++.|.+.|.-|.+=...|
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~ 74 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDL 74 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999999999988888776665
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.54 E-value=1.3e+02 Score=28.49 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
..+++.|++....|+..+..|=.+|+.++.+....+.++..|+.=...+..
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777887777777777777777777766666666666665555554433
No 99
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=42.54 E-value=1.9e+02 Score=27.41 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
++++-.+++.+||..|+.|..+++++..+.+.|..+-+.+-.=+.
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777776665554443333
No 100
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=42.52 E-value=1.6e+02 Score=22.81 Aligned_cols=40 Identities=35% Similarity=0.377 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
.++..|-..|-+|-+.+.+.=+||--|.=||+-|.+-+++
T Consensus 15 ~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 15 EQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3344444444444444444455556666666666655555
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.28 E-value=1.2e+02 Score=26.50 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
-+|.+-|..|-..++++++....|+.||-.|.+
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555444433
No 102
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=41.28 E-value=55 Score=24.77 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 99 SVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 99 ~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.+|+.+..|+.||-+|+-=|+=|+
T Consensus 76 rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888877777663
No 103
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=41.10 E-value=1.1e+02 Score=26.44 Aligned_cols=38 Identities=32% Similarity=0.367 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
.+.+++..|+..+..|-...+..+.+.++|++++..|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566667777777777777777777777777777665
No 104
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=40.96 E-value=76 Score=23.42 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.+...+...+.++++|..+|..|-.=|.+|=
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566888999999999999999888874
No 105
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.55 E-value=2e+02 Score=23.32 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
..+.....|...+.+-........+...|..|-+.|+.|+..|-
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666666666666666666666666553
No 106
>KOG1785|consensus
Probab=39.78 E-value=21 Score=33.36 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHhhccc
Q psy5453 97 VDSVKEENLRLRSENQVLGQYIENLMSASS 126 (138)
Q Consensus 97 Vd~VKeE~~KL~sENq~Lq~YI~NLMssS~ 126 (138)
|....+...++-.+|+||.=||+|||..+.
T Consensus 89 i~s~~~d~~~~~~~ndy~~ifl~nlm~K~k 118 (563)
T KOG1785|consen 89 ILSKNEDIMQLLPENDYLKIFLENLMKKCK 118 (563)
T ss_pred HHHhhhhhhccCccccHHHHHHHHHHHHHH
Confidence 444556667777799999999999998653
No 107
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.67 E-value=1.7e+02 Score=22.29 Aligned_cols=49 Identities=33% Similarity=0.405 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH----HHHHHHhh
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLG----QYIENLMS 123 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq----~YI~NLMs 123 (138)
+-.++.++...|+.-|+.+.+++.++..+..+++....-++ .+-..+.+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDS 134 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445666667777777777777777777776666555544 55444443
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.60 E-value=1.4e+02 Score=24.73 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
++|.+.+..-...+..|.++++..+.|..+|+..++.++.=|+.|-.
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555555555566788899999999999999999888887777643
No 109
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.50 E-value=1.7e+02 Score=23.18 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L 114 (138)
.+.+++..++..|+..+..+-.+|+..++..++++..++..
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555554443
No 110
>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.
Probab=39.49 E-value=47 Score=22.79 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
..|+.||.+.=.++=-....+.||+-||
T Consensus 29 eelR~LWrkAI~QqIlL~RMEKEN~kLq 56 (56)
T PF11830_consen 29 EELRELWRKAIHQQILLLRMEKENQKLQ 56 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3455566665555555566667777654
No 111
>KOG1854|consensus
Probab=39.33 E-value=59 Score=31.49 Aligned_cols=46 Identities=33% Similarity=0.443 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhccccc
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVF 128 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vf 128 (138)
|..-++++..|.+.+++|+.+.-...+|+.++++|=++.-.+-.-|
T Consensus 246 I~~t~~ta~kLs~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~F 291 (657)
T KOG1854|consen 246 ITATKDTAHKLSNQLDNVKREVSSSNSEAEVVGKYSELVEKARHQF 291 (657)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999987764444333
No 112
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=39.15 E-value=1e+02 Score=19.58 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HhHHHHHHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSEN----QVLGQYIENL 121 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sEN----q~Lq~YI~NL 121 (138)
.+.+.=+.++++...++..+...-.+|+.+.+...+|.+.+ ..++..+.+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l 85 (105)
T PF00435_consen 31 SDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEEL 85 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 45566677888999999999999999999999999996653 4455555544
No 113
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.94 E-value=1.3e+02 Score=28.14 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 87 QNTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 87 Q~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
+|||+.|+.++.+++.+..+|.++|+-|.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~ 86 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALK 86 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333
No 114
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=38.71 E-value=2.1e+02 Score=23.22 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-hhhhHhHHHHHHHHh
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEE-NLRL-RSENQVLGQYIENLM 122 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE-~~KL-~sENq~Lq~YI~NLM 122 (138)
...+++.|.+.+-+|+..+..+..++...-++ ...| ..--..|++||+++.
T Consensus 39 lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t 91 (165)
T PF09602_consen 39 LKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWT 91 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888887777 5556 234456788888774
No 115
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.48 E-value=1.9e+02 Score=22.75 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
|+.-=..|..+|..| .+-........+|+.|..-|-.-|..
T Consensus 7 L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~ 47 (188)
T PF10018_consen 7 LIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRD 47 (188)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444432 23333344444444444444443333
No 116
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=38.14 E-value=1.8e+02 Score=24.23 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+++..|..+...|-.-=..|+.+|...++|+.||..|=.-|+.=+..|
T Consensus 81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 81 EENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 344455555555555555566666666666666666666555555555
No 117
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.94 E-value=91 Score=26.31 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhhHh
Q psy5453 99 SVKEENLRLRSENQV 113 (138)
Q Consensus 99 ~VKeE~~KL~sENq~ 113 (138)
+++.||++|++--.+
T Consensus 95 ~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 95 NLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHhcC
Confidence 366777777665544
No 118
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=37.86 E-value=1.4e+02 Score=23.51 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
+++|-+-+..|++.|..|.+|+..+..+..++.
T Consensus 103 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 103 IEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666655554443
No 119
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.73 E-value=49 Score=23.33 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 95 QRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
...+..+.|..+|+.+|+-|+..+..||
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~ 39 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLM 39 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456677888888888888888887776
No 120
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=37.64 E-value=93 Score=24.26 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhHhHHHHHH
Q psy5453 88 NTLDDLSQRVDSVKEE-NLRLRSENQVLGQYIE 119 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE-~~KL~sENq~Lq~YI~ 119 (138)
.+|..|-.+|-..|.| ..-|++||+||.+=+-
T Consensus 70 ~til~LheKvl~aKdETI~~lk~EN~fLKeAl~ 102 (126)
T PF13118_consen 70 GTILNLHEKVLDAKDETIEALKNENRFLKEALY 102 (126)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666 5667888888876443
No 121
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.29 E-value=1e+02 Score=25.87 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
+..-.+|.+|...+++++..|-+.|+.+|.+|.||=.-=+|||.|=++
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 345567899999999999999999999999999999999999999865
No 122
>PF14645 Chibby: Chibby family
Probab=37.12 E-value=66 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhhHhHHH
Q psy5453 96 RVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 96 RVd~VKeE~~KL~sENq~Lq~ 116 (138)
+....++||.-|+=++++|-+
T Consensus 79 ~n~~L~EENN~Lklk~elLlD 99 (116)
T PF14645_consen 79 ENQQLEEENNLLKLKIELLLD 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 123
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=37.05 E-value=84 Score=28.92 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=8.5
Q ss_pred HhhhhHhHHHHHHHHhh
Q psy5453 107 LRSENQVLGQYIENLMS 123 (138)
Q Consensus 107 L~sENq~Lq~YI~NLMs 123 (138)
|...=+.||+.|+.-.|
T Consensus 479 l~~~Tr~Lq~~iE~~IS 495 (507)
T PF05600_consen 479 LVERTRELQKQIEADIS 495 (507)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555443
No 124
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=36.90 E-value=1.3e+02 Score=27.73 Aligned_cols=47 Identities=26% Similarity=0.478 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLS------------QRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~------------~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
.+=+.|+..+-.|||...+|= ..++.|.++...++.+=+-|++||..
T Consensus 217 ~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~ 275 (426)
T smart00806 217 EDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDI 275 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344679999999999998873 45788999999999999999999975
No 125
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=36.37 E-value=53 Score=26.75 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
..+|.+|...|+..+..|-.+... .+.|+.||+.|.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~----~~~l~~en~~L~~ 107 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQE----LEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 334444444444444433333221 1244455555544
No 126
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.31 E-value=71 Score=21.00 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 99 SVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 99 ~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
-.|.=|+.|..||+-||.=+..|=+
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999999998854
No 127
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.27 E-value=1.6e+02 Score=21.03 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
..+..++..|+..-.-|-++.+.....+.+|+.-|.-+..=+...|.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888999999999999999999988887777775
No 128
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.78 E-value=1e+02 Score=30.84 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
|..|.++...+++.|-.+.++.-+.++.++.||+-|..-|
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888899999999999999999998877664
No 129
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=35.76 E-value=1.9e+02 Score=21.88 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 77 ARLISQVLELQNT------LDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 77 e~Li~eil~LQ~s------L~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
+...+++..||.. ++.|=.....++++.++|++=+.-+..+|
T Consensus 59 e~~~Rev~~L~~~L~~~~~~e~LE~~M~kaqe~~e~Lrs~v~p~e~eI 106 (106)
T PF03528_consen 59 ESEEREVAKLQRRLREGQELENLEKSMKKAQEDEEKLRSVVMPMEQEI 106 (106)
T ss_dssp ---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHHhHHHHHHHhcccccccC
Confidence 3334445455443 35566778888999999998888887776
No 130
>KOG4460|consensus
Probab=35.64 E-value=1.4e+02 Score=29.10 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
|+++.+++..||...+.=.+|+...++|..+++..-.+|-+-|+
T Consensus 583 ~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~e 626 (741)
T KOG4460|consen 583 KEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYE 626 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999999999999999888888877664
No 131
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.61 E-value=2.1e+02 Score=22.22 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQ---RVDSVKEENLRLRSENQ 112 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~---RVd~VKeE~~KL~sENq 112 (138)
.+++..|-.|+...+.+|..|-. -+++++.+.+.|+.+|.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 56888899999999999999887 68889999999998887
No 132
>PRK11637 AmiB activator; Provisional
Probab=35.50 E-value=2.3e+02 Score=24.66 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.+..|-....+.+.+..+|+++-+-|+..|..+-
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555677777788888888888764
No 133
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=35.39 E-value=2.2e+02 Score=23.02 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.+-.+|..|...|...-.|.+.....+.+|+.++.-|..=|...
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778999999999999999999999999999988887766543
No 134
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=34.76 E-value=2e+02 Score=21.66 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
...++|..++++ ||.+.-.....-.+|-+-++||..||.-|+-
T Consensus 19 l~~sErTeaLqq---lr~~~~sf~sEy~dlT~~~eKl~aek~DL~v 61 (97)
T PF11418_consen 19 LTESERTEALQQ---LRESYTSFHSEYEDLTEALEKLTAEKEDLIV 61 (97)
T ss_dssp S-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 566777777765 5667777778888999999999999998874
No 135
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=34.47 E-value=2.6e+02 Score=23.03 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
|...-.++..||..|.-.=-+|....+..++...||+-|-.-.+.|++.
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788999999999999999999999999999999999998763
No 136
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=34.23 E-value=1.4e+02 Score=19.73 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRV--------------DSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RV--------------d~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.++++|-+++..++..+..+-.++ +.-++....+..+=+.|+.+|.+|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888999988888888877664 455666666677777778888765
No 137
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.09 E-value=2.2e+02 Score=24.95 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
+|++|+++.-+||.-+..+-.|+.....|+-.|+
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333
No 138
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=33.99 E-value=53 Score=22.76 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRS 109 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~s 109 (138)
.++-.|++++..|-.|+...+.||.-|++
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777788888777765
No 139
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=33.82 E-value=68 Score=24.76 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 97 VDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 97 Vd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+++.-.|..||+-||+.|..-|..=
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5666777788888888888777653
No 140
>KOG4797|consensus
Probab=33.76 E-value=1.7e+02 Score=22.86 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 87 QNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 87 Q~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
++-.+.|-..|.+..+.+..|+.||..|...+
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444455555555555666777776666544
No 141
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=33.29 E-value=1.6e+02 Score=20.26 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLS 94 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~ 94 (138)
..+++.++.++..+......++
T Consensus 43 ~~~k~~l~~~l~~le~~r~~~~ 64 (143)
T PF05130_consen 43 VEEKQELLEELRELEKQRQQLL 64 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556655555554444433
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.15 E-value=3.1e+02 Score=23.55 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
++|++++..|+..-..|...+..++.+..+|+
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666555555555655555555554
No 143
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=32.74 E-value=1.5e+02 Score=26.79 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHhHHHHHHHHhhcc
Q psy5453 70 PDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRS--ENQVLGQYIENLMSAS 125 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~s--ENq~Lq~YI~NLMssS 125 (138)
...+.-++.+-+++.+|+..+..||+.+..+-.+.++|=- .++++-.||=.+.+-+
T Consensus 286 ~~~~~l~~~m~~Dv~el~~~i~elwde~~~l~~~l~slLd~g~~e~i~~yIl~~i~~~ 343 (366)
T PF04943_consen 286 IRPNSLKARMEKDVNELLKSIPELWDEIKNLASELNSLLDDGQNEYIDRYILHKISRS 343 (366)
T ss_pred CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhc
Confidence 3466667777788899999999999999999999999876 9999999998876533
No 144
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.47 E-value=1.7e+02 Score=20.14 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 93 LSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 93 L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
...++...-.++.+|+.||++|++=+.
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665443
No 145
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=32.18 E-value=78 Score=27.17 Aligned_cols=39 Identities=31% Similarity=0.559 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
--+|.+|.++-.++++....+.++..||..|..=+..|.
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~ 148 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLI 148 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999987655554
No 146
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.17 E-value=1.9e+02 Score=27.83 Aligned_cols=52 Identities=33% Similarity=0.402 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQR--------------VDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~R--------------Vd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
..+..+|-.+++.|+.-|+..-+. =...|.|...|+.||+-||.=|.+|+.+
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a 482 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA 482 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888877776654332 2356777999999999999999999764
No 147
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.10 E-value=2.4e+02 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
..|...-..++.++-++...|.+|+.|-.-|+
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555556666655554443
No 148
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=32.05 E-value=2.2e+02 Score=25.67 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 76 KARLISQVLELQNTLDDL---------SQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L---------~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.++|.+++..++..|..+ -.+++...++...|+.-=++|+.||+.|-.
T Consensus 172 l~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 172 LDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666653 556666777788888888889999998843
No 149
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=31.87 E-value=60 Score=18.30 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhHhH
Q psy5453 99 SVKEENLRLRSENQVL 114 (138)
Q Consensus 99 ~VKeE~~KL~sENq~L 114 (138)
.+..++.||+.|.+.|
T Consensus 5 ~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 5 QLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 5677888999888876
No 150
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.67 E-value=2.2e+02 Score=24.69 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
+.++...+|.-|+.|-+.|+++....+.++.+|.-++.=|
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ei 82 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEI 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 151
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=31.35 E-value=1.9e+02 Score=25.49 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.|-.++..++.++++|+++..-|+.=++-++
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v 171 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFV 171 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666666666666555555444
No 152
>KOG0161|consensus
Probab=30.95 E-value=2e+02 Score=31.27 Aligned_cols=51 Identities=27% Similarity=0.330 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
.+.+.-+++...+-..+.-|.++++++++..+.|+.+|+-|+.=|.+|+.+
T Consensus 1456 ~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~ 1506 (1930)
T KOG0161|consen 1456 AELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQ 1506 (1930)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777888888888888999999999999888888763
No 153
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.61 E-value=1.8e+02 Score=19.86 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
+.|+.+|+.+-..++.++++.+.+..|-.-+-...+
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n 57 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTN 57 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333333
No 154
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.60 E-value=2e+02 Score=20.49 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.+.......|...++.|+.+.....+|+.==..|-.|+.-|
T Consensus 51 ~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 51 LEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777777777777777777777665
No 155
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=30.55 E-value=3.2e+02 Score=24.96 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLS------------QRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~------------~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.|+..+-.||+...+|= ..++.|..++..+..+=+-|+.||..+
T Consensus 216 d~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777888888877763 346778888888888888888888765
No 156
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=30.46 E-value=74 Score=20.63 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLD 91 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~ 91 (138)
-.+.|++||.++..|-.+.+
T Consensus 32 n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 32 NLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 34567778877777776665
No 157
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.39 E-value=2.9e+02 Score=22.27 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
|-+.+..||.....+-..-++-..|..+|+++-+.|.+=|.|.
T Consensus 136 Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 136 LEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555566666666666666666655
No 158
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=30.27 E-value=1.7e+02 Score=24.73 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSE 110 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sE 110 (138)
..+.|..+.+++|..+..+...+...+++.+++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555555566655555555555555555554443
No 159
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=29.99 E-value=1.7e+02 Score=24.48 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=36.5
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---hHHHHHHHHhh
Q psy5453 73 QEEKARLI----SQVLELQNTLDDLSQRVDSVKEENLRLRSENQ---VLGQYIENLMS 123 (138)
Q Consensus 73 ~eeKe~Li----~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq---~Lq~YI~NLMs 123 (138)
+++|..-+ ++-..|...+..+=..|...|+|+..|..-.+ ||..-|+-||.
T Consensus 113 AE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 113 AEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555544 44456777777888888889999999887776 67777777775
No 160
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=29.88 E-value=2.6e+02 Score=21.59 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
....+..|++....+..++....+.|++|-.|..-|.+..+.+.+
T Consensus 26 ~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~ 70 (157)
T PF04136_consen 26 ILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISE 70 (157)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777778888888999999999988877766643
No 161
>PHA03155 hypothetical protein; Provisional
Probab=29.82 E-value=76 Score=24.55 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 97 VDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 97 Vd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
|++...|..||+-||+.|.+-+.
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888887664
No 162
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=29.79 E-value=1.5e+02 Score=24.37 Aligned_cols=63 Identities=24% Similarity=0.404 Sum_probs=43.0
Q ss_pred CccCCccccccccccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 39 IRADHSLDSISSSFTNSSSSPGRNSLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRL 107 (138)
Q Consensus 39 ~~~~rs~ds~~s~f~~~a~SP~~~s~d~e~~~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL 107 (138)
......+++||.++..- ...+.......+..=++|..+..+|-..+..+.+|++..+.-..+|
T Consensus 113 ls~~~~I~~LP~~w~~~------~~~~~~~~~e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lL 175 (213)
T PF13093_consen 113 LSNPENIEELPESWPRQ------QEQDEDASPEEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLL 175 (213)
T ss_pred cccHhHHHHCCchhhhc------ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44467788888844321 1233333345555557788888888888888888888888877777
No 163
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.78 E-value=3e+02 Score=22.23 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH--HHh
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE--NLM 122 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~--NLM 122 (138)
..++=..|-.+....|+...++-.++-....+..++..+++-|++++. ||.
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~ 118 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLA 118 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 344555567777888999999999999999999999999999999887 554
No 164
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=29.77 E-value=2.9e+02 Score=26.81 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
|+.++.....+|+.+- -+.++..|.+..||+-|.+||.-=...+.+
T Consensus 16 E~~~l~~~~~~lk~~~---~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 16 ERQALKSSVEELKESH---EEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444444333 457888999999999999999877666644
No 165
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=29.66 E-value=2.6e+02 Score=26.50 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHhHHHHHHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDS----VKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~----VKeE~~KL~sENq~Lq~YI~NL 121 (138)
...+.|+.|.+||...++-+..|-+.=+. ++=+.-||+.||+.+.+-..++
T Consensus 299 sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekev 353 (518)
T PF10212_consen 299 SSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEV 353 (518)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999988888765433 5566678999999987776665
No 166
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.46 E-value=3.3e+02 Score=23.13 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.1
Q ss_pred HHHhhh
Q psy5453 105 LRLRSE 110 (138)
Q Consensus 105 ~KL~sE 110 (138)
++++.+
T Consensus 44 ~~~~~~ 49 (378)
T TIGR01554 44 EKLKEE 49 (378)
T ss_pred HHHHHH
Confidence 333333
No 167
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.13 E-value=2.5e+02 Score=27.09 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.|++|.+++..|+...+.-..++..++++.++|+..-+.|.+=|+..
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788888888777888888888888877766666555443
No 168
>KOG1962|consensus
Probab=28.76 E-value=2.2e+02 Score=23.98 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHhHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVK-------EENLRLRSENQVLGQYIE 119 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VK-------eE~~KL~sENq~Lq~YI~ 119 (138)
.+..+.|..+....+..|..+-..+++++ .|.+.|..||+-||.=|+
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44455566666666666666555555555 455666667777776554
No 169
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=28.51 E-value=3e+02 Score=22.13 Aligned_cols=48 Identities=25% Similarity=0.214 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+...|-.++..|+..|...-.|.+=.+...+=+...-+.|+.|+..|
T Consensus 157 ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~L 204 (240)
T PF12795_consen 157 AELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQAL 204 (240)
T ss_pred HHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777776666666677777776665
No 170
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.40 E-value=3.3e+02 Score=22.21 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
..++.+|.-++..|+.-+..+-.|.+.....+..++.+..-|..=+++
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 345666666677777777777677666666666666666655544443
No 171
>KOG2991|consensus
Probab=28.37 E-value=1.3e+02 Score=26.87 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.++--+|.|+.-|-+++.+-+.+...|+.+|+.+.+-|+.=
T Consensus 271 edVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 271 EDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455677777778888888999999999999999888764
No 172
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=28.26 E-value=87 Score=22.71 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDD 92 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~ 92 (138)
++.++.++|.+||.+-+..|+.
T Consensus 65 DcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 65 DCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998864
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.19 E-value=2.1e+02 Score=24.76 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+.|.+....||.....|...+..+.....+|......|..=+.+|.+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
No 174
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=28.10 E-value=59 Score=20.74 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 91 DDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 91 ~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
..+..||.+...++.+|.+||--|...+
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3466688888888888888888777654
No 175
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=27.94 E-value=3.2e+02 Score=24.17 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
+-|+-+++.+...+.++..|..+|+-|+.=+..|.
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~ 164 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLL 164 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666655554443
No 176
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.52 E-value=1.8e+02 Score=22.50 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+-..|++.|+|.++.+.|-+.|++=++||
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544
No 177
>KOG0995|consensus
Probab=27.50 E-value=2.1e+02 Score=27.48 Aligned_cols=49 Identities=31% Similarity=0.414 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLS--------------QRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~--------------~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
..++.+++|...+.-+|+.+-.|. ..++++.+|+++|+.+|.-|+.-|+
T Consensus 263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655555544333 3344444555555555555554444
No 178
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=27.48 E-value=2.3e+02 Score=21.92 Aligned_cols=46 Identities=28% Similarity=0.264 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
|-+|.-++..|-++|-.|...+...|.....|-.||-.|+-=-.+|
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 5567888899999999999999999999999999999999777776
No 179
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.43 E-value=3.6e+02 Score=23.84 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcc
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSAS 125 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS 125 (138)
+..+...|+..++.|-.++...+.+..+++.|-+.|..=|..|.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVP 66 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44444455555666666666666666666666666666666665433
No 180
>PRK15202 type III secretion chaperone protein SigE; Provisional
Probab=27.42 E-value=33 Score=26.61 Aligned_cols=16 Identities=31% Similarity=0.760 Sum_probs=11.6
Q ss_pred CCCCCCCCCccccCCC
Q psy5453 14 IPLADDDPQAIISDEV 29 (138)
Q Consensus 14 i~~~~d~p~v~i~~~~ 29 (138)
|++|+|+|.++|.++-
T Consensus 14 ld~~~depaliidddi 29 (117)
T PRK15202 14 LDAPEDEPALIIDDDI 29 (117)
T ss_pred CCCCCCCceEEecCCe
Confidence 6777788887777653
No 181
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.41 E-value=91 Score=21.76 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
++.+=..|.++-.=+++...+...|+.+++..++.+..+-
T Consensus 40 ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 40 ARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444666788889999999988887777776653
No 182
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=27.39 E-value=1.6e+02 Score=24.02 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
..+.++.+.++....+..+...-.-+.+.+...+.++.+-.-|++=|
T Consensus 123 ~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 123 GKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445455555444444444444444444444444433
No 183
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=27.32 E-value=1.6e+02 Score=19.71 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
-|.+|. +.-.|+++|+.+|.-|+.-+.
T Consensus 31 vL~~R~-~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 31 VLLDRA-ALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344443 345567888888887765443
No 184
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=27.25 E-value=1.5e+02 Score=25.07 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+++-+-.+....+++|+.+++.-..+.+||++=
T Consensus 76 ~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~e 108 (209)
T COG5124 76 TLQKLYDSSELLKKKIQEVKQDIATYKEEIDKE 108 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444455555555555555555555555554
No 185
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=27.24 E-value=2.7e+02 Score=27.38 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
.+++++..++..|+.+|..+=.|++.+|.+.++...+=+-|+.-+
T Consensus 121 ~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 121 AERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999888888777755
No 186
>KOG3863|consensus
Probab=27.19 E-value=2.4e+02 Score=27.25 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh---HhHHHHHHHHhhcccccccCCC
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSV-KEENLRLRSEN---QVLGQYIENLMSASSVFQSTSP 133 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~V-KeE~~KL~sEN---q~Lq~YI~NLMssS~vfqst~~ 133 (138)
=+-+|++|+++-.++-.+|..|.+.+-+. ++++..|..++ .+-.+|+--..+..+||-...+
T Consensus 523 l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~~lrd~eg~~~sp~~yalq~a~dGsi~l~pr~ 588 (604)
T KOG3863|consen 523 LQKEKEQLLRERDELDSTLGVMKQQLSELYQEVFQQLRDEEGNPYSPSQYALQQAADGSIKLAPRE 588 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHhhccCceeecchh
Confidence 35678999999999999999999998775 67778888777 8999999999999988865443
No 187
>PLN02943 aminoacyl-tRNA ligase
Probab=27.02 E-value=3e+02 Score=27.23 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRV-----------DSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RV-----------d~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+-..++++|.+++..||..+..+-.|+ +.|++|.+||+.-.+.|..+.+.|..
T Consensus 886 D~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~ 949 (958)
T PLN02943 886 DISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAF 949 (958)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999888776 45788888998888888888777754
No 188
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.71 E-value=2.8e+02 Score=20.95 Aligned_cols=39 Identities=31% Similarity=0.414 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
+--|+..||+.|..|...=+...+|.-+|..+|+-+..+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~ 66 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRAL 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666666655444
No 189
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=26.70 E-value=2.7e+02 Score=20.59 Aligned_cols=46 Identities=33% Similarity=0.345 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.|-+..+.++..|..+-.+|...-.++..|+.+-+.+..-...+++
T Consensus 45 ~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 45 ELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445556777888888888888888888888888888887777754
No 190
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=26.66 E-value=21 Score=33.07 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLR-SENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~-sENq~Lq~YI~NL 121 (138)
++.-+||..||+.|+..-.|.+++..+..-=+ .-|+.|++|=.-|
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RL 417 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARL 417 (495)
T ss_dssp ----------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34557999999999999999999877664333 4478888885444
No 191
>KOG0239|consensus
Probab=26.58 E-value=2.9e+02 Score=26.56 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.-+++..||+-|..|-.+...++.++.++..+++-.-.+++.+.+
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQS 283 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334478888888888888888888888888888888888877643
No 192
>PHA03162 hypothetical protein; Provisional
Probab=26.27 E-value=93 Score=24.68 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 97 VDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 97 Vd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
|++...|..||+-||+-|..-|.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777877777663
No 193
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=26.25 E-value=45 Score=26.21 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
..++.-|..|...-..++.+...|.+||..|..
T Consensus 11 ~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~ 43 (181)
T PF09311_consen 11 RALQQHLQSLEAERQKLRAQVRRLCQENDWLRG 43 (181)
T ss_dssp HHHHHHHHHHHHCCHHHHT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888888888899988865
No 194
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=26.24 E-value=2.7e+02 Score=24.63 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
..+|.+++..|+.....|.......+.+..+++.|.+-|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456777777777777777777777777777777776654
No 195
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.11 E-value=3.9e+02 Score=22.31 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
+.|..++..|+.-+..|.++....+.|.++++
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~r 74 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYR 74 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666665555555555443
No 196
>KOG4196|consensus
Probab=25.94 E-value=2.4e+02 Score=22.44 Aligned_cols=37 Identities=41% Similarity=0.516 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+|+..=..|++.|+..++|+..+..|=.++..--+-|
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555555555555555544444333333
No 197
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.82 E-value=4.3e+02 Score=22.69 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
+.+.+++..|+.--..|...+.++..|++.|.+|=.-|+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555544444444444433
No 198
>KOG4398|consensus
Probab=25.79 E-value=2.6e+02 Score=25.22 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.|+++.-++-.+--.+-++-|..|....++.-+||..-|.-|++.++
T Consensus 18 nee~~~~~~~~~k~~e~~qkl~sr~~~~~ekke~i~r~n~k~~d~v~ 64 (359)
T KOG4398|consen 18 NEEMEKNSEGLLKTKEKNQKLYSRAQRHQEKKEKIQRHNRKLGDLVE 64 (359)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH
Confidence 44554444444444455666788888888888999888887776554
No 199
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=25.72 E-value=1.9e+02 Score=18.53 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
+.|.++-..|+.+...+-+=.+--..-...|...++.|+.
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~ 40 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKR 40 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777776655555555556666666666654
No 200
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.57 E-value=2.2e+02 Score=19.33 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
++|=.++..|..-.+.|.+-|..++.+....+.|=.---+=|+|.-
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4566777777777777777777777777777666555555556554
No 201
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.23 E-value=49 Score=30.85 Aligned_cols=28 Identities=39% Similarity=0.516 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKE 102 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKe 102 (138)
+=|+|-+|+.+||+.+.+|-.||++|+.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5667777888888888777777777655
No 202
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.17 E-value=1.5e+02 Score=26.33 Aligned_cols=41 Identities=34% Similarity=0.382 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+-.|..+|+---.+|++.|.+.--|+.||+.|-+--+||-.
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 34566667767778999999999999999999998888843
No 203
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=25.01 E-value=4.2e+02 Score=22.67 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCccCCccccccccccCCCCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q psy5453 12 NNIPLADDDPQAIISDEVESSQNSEGPIRADHSLDSISSSFTNSSSSP-GRNSLDPDVSPDEQEEKARLISQVLELQNTL 90 (138)
Q Consensus 12 ~~i~~~~d~p~v~i~~~~~~~~~~~~~~~~~rs~ds~~s~f~~~a~SP-~~~s~d~e~~~~~~eeKe~Li~eil~LQ~sL 90 (138)
+-.|..+|+.+|.|++++..-+-.-.+.+.|+-+ |-..|. +-+.........++.+|.++......+..-=
T Consensus 94 ~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhV--------NKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a~~~l~ 165 (239)
T COG1186 94 EVFPELDISIEIEIPDDDLRIDTYRASGAGGQHV--------NKTDSAVRLTHLPTGIVVLCQNERSQHLNKALARKMLK 165 (239)
T ss_pred eecCCCCcccceecCccceEEEEEEcCCCCCCcc--------ccccccEEEEEcCCCCEecCHHHHHHHHHHHHHHHHHH
Confidence 3467778889999988875444311122222211 111122 1122223445788999988886655443222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 91 DDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 91 ~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
--|...-.+-+.+..+-..-.+-+-..|.-.
T Consensus 166 ~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qi 196 (239)
T COG1186 166 GKLYILAQEKRSQEKNRERALKKLIGWGNQI 196 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 2233333333333333333334444444443
No 204
>KOG0995|consensus
Probab=25.00 E-value=3.5e+02 Score=26.09 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.+...-+|++..++.-..|+..=.-+|.|+.+|.+
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~ 287 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKS 287 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444456777777777777776667777766644
No 205
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=24.99 E-value=4.8e+02 Score=24.87 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=45.0
Q ss_pred ccCCccccccccccCCCCCCCCCCCCCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 40 RADHSLDSISSSFTNSSSSPGRNSLDPDVSPDEQEEKARLISQV-LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 40 ~~~rs~ds~~s~f~~~a~SP~~~s~d~e~~~~~~eeKe~Li~ei-l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
..++.+|+-+-.|... |.+.....+ ...+.-|+...++| +=|-+....++.-|+..|++++-+.+..+-+..=+
T Consensus 326 D~~~l~~~~~pg~g~~---~~~~~~~~~--~~~~~~r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L 400 (557)
T PF01763_consen 326 DQNRLFDTRQPGFGGA---PGGAGSGGE--PVQQAFRDSVSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESEL 400 (557)
T ss_pred cccccCCCCCCCCCCC---CCCCCCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377777777777655 322221122 34566677777776 44566677777777777777666666665554444
Q ss_pred HHH
Q psy5453 119 ENL 121 (138)
Q Consensus 119 ~NL 121 (138)
..+
T Consensus 401 ~r~ 403 (557)
T PF01763_consen 401 SRY 403 (557)
T ss_pred HHH
Confidence 333
No 206
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.97 E-value=3.6e+02 Score=21.53 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhHhHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVK-----EENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VK-----eE~~KL~sENq~Lq~YI~N 120 (138)
=.+.++.|.+++.+|+..|..+-+.|..++ .|.+.+...=+-|-+-|.-
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999988775 4555555555555555555
No 207
>PF15294 Leu_zip: Leucine zipper
Probab=24.79 E-value=3.6e+02 Score=23.52 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+.|.++|..||.-..-|-+|+..+...+-..-.|+.-|+.=|..|-.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888888888888888888877777777777777643
No 208
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.59 E-value=1.8e+02 Score=22.72 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.|-+.|..++..+++++++.++++.+-+.|..=..
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888888776665443
No 209
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=24.33 E-value=3.9e+02 Score=26.39 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRV-----------DSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RV-----------d~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+-..++++|.+++..||..+..+-.|+ +.|++|.+||..-..-|..+.+.|..
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~ 989 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEE 989 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998888887 56788888888777777776666543
No 210
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=24.22 E-value=3e+02 Score=22.43 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
+.++=..|+..|.-|+.+...++....+|+..|+.|+.
T Consensus 161 i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 161 IKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888999999999999999998888853
No 211
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.01 E-value=3.6e+02 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
.|.++...+|..+..|.++|.......+..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666655555555554
No 212
>KOG2483|consensus
Probab=23.99 E-value=2.8e+02 Score=23.42 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
-.|++.++.-..+|.. ..-+.....++|+.||..|+.=+.+|
T Consensus 97 lsiL~kA~~~i~~l~~---~~~~~~~~~e~l~~e~~~l~~rl~ql 138 (232)
T KOG2483|consen 97 LSILDKALEHIQSLER---KSATQQQDIEDLSRENRKLKARLEQL 138 (232)
T ss_pred hHhhhhHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555554554443 55567778889999999999999886
No 213
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.87 E-value=3e+02 Score=20.31 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+|.+=+.....|++.-.+|...++...+.++.|....+....-++|-
T Consensus 8 eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW 54 (103)
T PF08654_consen 8 EKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANW 54 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhH
Confidence 44444566678888889999999999999999999999888877775
No 214
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.87 E-value=1.7e+02 Score=21.33 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQ 112 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq 112 (138)
...+.|+.|-++ +..|..++....++..+|+.||+
T Consensus 33 Ls~e~R~~lE~E-------~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 33 LSPEARRSLEKE-------LNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred CChHHHHHHHHH-------HHHHHHHhhccHHHHHHHHHhhh
Confidence 444566666544 44567778888888999999997
No 215
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.81 E-value=3.3e+02 Score=20.74 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy5453 81 SQVLELQNTLDD 92 (138)
Q Consensus 81 ~eil~LQ~sL~~ 92 (138)
.+...|+.+|.+
T Consensus 16 n~La~Le~slE~ 27 (107)
T PF09304_consen 16 NRLASLERSLED 27 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 216
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.80 E-value=2.1e+02 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
.+=+++..|+.+.+.++.+.++|.+=+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888888876665433
No 217
>KOG4841|consensus
Probab=23.72 E-value=1e+02 Score=23.08 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q psy5453 70 PDEQEEKARLISQVLELQNTLD 91 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~ 91 (138)
.++.|++-+|++||++-|+.|.
T Consensus 68 nDc~eA~veL~~~IkEAr~~L~ 89 (95)
T KOG4841|consen 68 NDCEEAAVELQSQIKEARADLA 89 (95)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999875
No 218
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=23.44 E-value=1.5e+02 Score=18.40 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 87 QNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 87 Q~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
.+.+++|+..|+.|=++|.. +|.+.|+
T Consensus 2 ~~~~D~lLDeId~vLe~NAe-----~FV~~fV 28 (33)
T TIGR03687 2 TEGVDDLLDEIDGVLESNAE-----EFVRGFV 28 (33)
T ss_pred cchHHHHHHHHHHHHHHhHH-----HHHHHHH
Confidence 35688999999999887653 4555555
No 219
>KOG2662|consensus
Probab=22.78 E-value=1.8e+02 Score=26.79 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH-HHHH
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLG-QYIE 119 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq-~YI~ 119 (138)
++++..+...|-.|..||..||.|.+.|=-+.+-|. .|+-
T Consensus 219 L~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT 259 (414)
T KOG2662|consen 219 LERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLT 259 (414)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 456677788888889999999999999988877664 4543
No 220
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.78 E-value=1.1e+02 Score=28.08 Aligned_cols=34 Identities=32% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHH---hhcccc
Q psy5453 94 SQRVDSVKEENLRLRSENQVLGQYIENL---MSASSV 127 (138)
Q Consensus 94 ~~RVd~VKeE~~KL~sENq~Lq~YI~NL---MssS~v 127 (138)
+...-..|+||.+|++||.-|..=+.-| |-.|.|
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V 67 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHV 67 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
No 221
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.67 E-value=3.5e+02 Score=24.90 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=6.3
Q ss_pred HHHhhhhHhHHHHHHH
Q psy5453 105 LRLRSENQVLGQYIEN 120 (138)
Q Consensus 105 ~KL~sENq~Lq~YI~N 120 (138)
-+++.||+-||.=++.
T Consensus 137 ~~~~EEn~~lqlqL~~ 152 (401)
T PF06785_consen 137 RHLREENQCLQLQLDA 152 (401)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3334444444433333
No 222
>KOG3335|consensus
Probab=22.55 E-value=1.9e+02 Score=23.99 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHh
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRL-RSENQV 113 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL-~sENq~ 113 (138)
-.+.=++++++|+.-+..|-+.|++.+..+..| +..|+.
T Consensus 100 kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 100 KEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 345557888999999999999999999999999 444444
No 223
>KOG2689|consensus
Probab=22.49 E-value=3.6e+02 Score=23.86 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=28.6
Q ss_pred CCccCCccccccccccCCCCCCCCCCCCC-CCCcchHHHHHHHHHHH
Q psy5453 38 PIRADHSLDSISSSFTNSSSSPGRNSLDP-DVSPDEQEEKARLISQV 83 (138)
Q Consensus 38 ~~~~~rs~ds~~s~f~~~a~SP~~~s~d~-e~~~~~~eeKe~Li~ei 83 (138)
+.+-++-+.-+|.+|..+..++.+.+... +......+++.+.++.+
T Consensus 50 ~~p~~~~~~~~~~~~~sg~~~~s~~se~~e~ik~ls~eE~~~~~~~i 96 (290)
T KOG2689|consen 50 STPLAADLGRLPTSFESGKLSDSGYSESEEEIKLLSEEEKKAQTKRI 96 (290)
T ss_pred cccchhhhhcccchhcCCCcCCchhhhhhhhccccChHHHHHHHHHH
Confidence 44445555569999999999997744432 33355566665555433
No 224
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.25 E-value=3.6e+02 Score=22.49 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
+...|..+|-.||+-.--|..-.+.++.-...|-.+|..||--|
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 45568899999999999999999999999999988999998766
No 225
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.99 E-value=2.6e+02 Score=25.88 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+..+.++|.+..++..+|++|-+-|++++..|
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555544
No 226
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.99 E-value=4.7e+02 Score=22.89 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
....|+.|+..|++++..|-.++.+.+.....|..-=--|+.=|.
T Consensus 318 ~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 318 PQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999888876666655443
No 227
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.93 E-value=4.6e+02 Score=21.72 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
-.+++..|-.++..++..+..+-.-++.++....+|+..=.-|..+..-|++.
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888899999999999999999988888877777777777553
No 228
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=21.92 E-value=2.5e+02 Score=26.23 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
+..+.++-.+...|...-..+..|+++.+.+++.|+.||--..|
T Consensus 40 d~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N 83 (701)
T PF09763_consen 40 DEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSAN 83 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 34556666666666666666677777777777777666544433
No 229
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=21.73 E-value=3e+02 Score=19.46 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRS 109 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~s 109 (138)
=+++..++..+...|...+.+..+......+|..
T Consensus 5 me~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~ 38 (90)
T PF14131_consen 5 MEKIYNEWCELLEELEEALEKWQEAQPDYRKLRD 38 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999988888864
No 230
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=21.72 E-value=3.7e+02 Score=20.47 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-HhHHHHHHHHh
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSEN-QVLGQYIENLM 122 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sEN-q~Lq~YI~NLM 122 (138)
.+..+...+..++..+.+|+.|. +-++.=++.||
T Consensus 56 ~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL 90 (136)
T PF04871_consen 56 ELEELASEVKELEAEKEKLKEEARKEAQSELDDLL 90 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 34455555566666666666554 44555555554
No 231
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=21.49 E-value=31 Score=28.41 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccc
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQ 129 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfq 129 (138)
.++.+||+++.+.-.++.+.| .|=+.|+.||..|=+++.+.+
T Consensus 11 ~~i~ELk~~~aeq~~ql~eqk-------REl~lLk~yirAlR~sNP~~r 52 (179)
T PF08941_consen 11 TKIAELKKEQAEQQQQLSEQK-------RELELLKEYIRALRSSNPVMR 52 (179)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCcC
Confidence 345566666665555555555 455788999998855554443
No 232
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=21.19 E-value=32 Score=29.57 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L 114 (138)
-.|..|..-++.|+..-+..++|+.+|..||.-|
T Consensus 129 T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 129 TKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666667777777777777777777
No 233
>KOG4797|consensus
Probab=21.05 E-value=2.8e+02 Score=21.71 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHhHHHHHHHHh
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRS--ENQVLGQYIENLM 122 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~s--ENq~Lq~YI~NLM 122 (138)
..|+.-|+.++.+|.+|....+.||-=|+. -|+.|.++=-+|-
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhcc
Confidence 367788889999999999999988877764 5777877665553
No 234
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.92 E-value=2.7e+02 Score=19.27 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENL 105 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~ 105 (138)
.++-.+|-+++..|++.+..+-+++..++....
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666555555443
No 235
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.80 E-value=3.4e+02 Score=19.76 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
++.|..++..|++.+..+...++.++....++..+.+.|+.
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777666653
No 236
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.69 E-value=4.2e+02 Score=23.33 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccc
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQ 129 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfq 129 (138)
|..++.+|..--+.+.++|.++|++-+.+-..=+-|-+=+.+|....+-|.
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~ 103 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334445555566667777777777766666555556666777777777663
No 237
>PRK02119 hypothetical protein; Provisional
Probab=20.66 E-value=3e+02 Score=18.98 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
..|.-.+--..++++.|-.-|-+++.+.+.|+.+-+.|.+=+..+
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446667777788999999999999999999999988887777664
No 238
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.57 E-value=2.1e+02 Score=20.08 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 93 LSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 93 L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
|.+.+...+..-..|..+|..|++=|
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666777777776543
No 239
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=20.33 E-value=2.3e+02 Score=23.40 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhh
Q psy5453 76 KARLISQVLELQNTLDDLSQRVD-----SVKEENLRLRSEN 111 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd-----~VKeE~~KL~sEN 111 (138)
+..+.++|..|++.|+.|+.|=| .||.+...|+..|
T Consensus 131 ~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 131 KINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34467899999999999988754 4666777776654
No 240
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=20.27 E-value=2.6e+02 Score=18.14 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRL 107 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL 107 (138)
.|+.++.+|-..|..|.+-+..+.+|.--|
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~L 34 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFL 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777766666666655443
No 241
>PF14244 UBN2_3: gag-polypeptide of LTR copia-type
Probab=20.20 E-value=2.1e+02 Score=21.13 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=30.5
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 85 ELQNTLDDL--SQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 85 ~LQ~sL~~L--~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.|+.....- ..|+-.++.+...+++....+.+|++.|-+
T Consensus 90 ~L~~~f~~~~~~~r~~~L~~~l~~~kq~~~sv~ey~~~lk~ 130 (152)
T PF14244_consen 90 ALKERFSQKSNASRVFQLRNELHSLKQGDKSVTEYFNKLKS 130 (152)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 444444333 368889999999999999999999999865
No 242
>PHA02682 ORF080 virion core protein; Provisional
Probab=20.02 E-value=5.8e+02 Score=22.11 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=50.5
Q ss_pred cccccccCCCCCCCCCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcc
Q psy5453 47 SISSSFTNSSSSPGRNSLDP-DVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSAS 125 (138)
Q Consensus 47 s~~s~f~~~a~SP~~~s~d~-e~~~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS 125 (138)
|-|-+-|.-+.||--.+--+ .....+...|.-+.+|....-++.++|...-...-.+.++-++--+---+-+..|+..+
T Consensus 180 scpti~tapaaspvle~ripdkv~~~d~~~k~~ikkeladiadsvrdl~aeS~~LtrDIE~AKstTq~AIdDLRrLl~~~ 259 (280)
T PHA02682 180 SCPTIETAPAASPVLEPRIPDKIIDADNDDKDLIKKELADIADSVRDLNAESLSLTRDIENAKSTTQAAIDDLRRLLTGG 259 (280)
T ss_pred cCcccccCcccCccccccCchhhhhcccchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555555566662211111 11224466777788888888899999888888888887777765544333334445556
Q ss_pred ccccc
Q psy5453 126 SVFQS 130 (138)
Q Consensus 126 ~vfqs 130 (138)
.|-.+
T Consensus 260 ~v~~~ 264 (280)
T PHA02682 260 GVARR 264 (280)
T ss_pred Ccccc
Confidence 55544
Done!