Query psy5453
Match_columns 138
No_of_seqs 94 out of 96
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 17:56:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vmx_A Voltage-gated hydrogen 93.2 0.33 1.1E-05 31.4 6.2 39 81-119 4-42 (48)
2 3tso_C RAB11 family-interactin 93.1 0.28 9.5E-06 34.3 6.2 50 74-137 14-68 (75)
3 3s9g_A Protein hexim1; cyclin 92.4 0.44 1.5E-05 35.1 6.7 43 74-116 30-86 (104)
4 1ci6_A Transcription factor AT 91.8 0.84 2.9E-05 29.8 7.0 44 76-119 18-61 (63)
5 1gd2_E Transcription factor PA 91.7 0.29 1E-05 33.2 4.8 37 88-124 29-65 (70)
6 3mq7_A Bone marrow stromal ant 89.6 1.5 5E-05 33.0 7.4 46 76-121 66-111 (121)
7 1a92_A Delta antigen; leucine 88.3 2.5 8.6E-05 27.4 6.9 45 76-120 2-46 (50)
8 2ieq_A S glycoprotein, spike g 84.9 0.7 2.4E-05 34.2 3.2 32 92-123 73-104 (109)
9 3hnw_A Uncharacterized protein 84.3 5.7 0.00019 29.5 8.0 45 77-121 85-129 (138)
10 2gzd_C RAB11 family-interactin 84.1 0.61 2.1E-05 34.5 2.5 50 73-136 45-99 (107)
11 3hrn_A Transient receptor pote 82.4 9.2 0.00032 25.9 8.0 52 72-123 4-55 (64)
12 2hv8_D RAB11 family-interactin 81.3 1.8 6.3E-05 29.1 3.9 15 108-122 36-50 (64)
13 2oqq_A Transcription factor HY 80.2 5 0.00017 25.2 5.4 36 78-120 7-42 (42)
14 2d7c_C RAB11 family-interactin 80.1 2.4 8.3E-05 26.4 3.9 13 110-122 16-28 (42)
15 2xdj_A Uncharacterized protein 79.9 9.6 0.00033 26.3 7.3 39 83-121 15-53 (83)
16 3w03_C DNA repair protein XRCC 76.3 4.8 0.00016 31.7 5.5 33 85-117 142-174 (184)
17 3te3_A Polycystic kidney disea 75.8 6.1 0.00021 24.3 4.7 30 72-101 5-34 (39)
18 1uii_A Geminin; human, DNA rep 75.0 15 0.0005 25.9 7.2 38 84-121 39-79 (83)
19 4e17_B Catenin alpha-1; four h 74.4 4.6 0.00016 25.1 3.9 24 73-96 11-34 (40)
20 2jee_A YIIU; FTSZ, septum, coi 72.7 20 0.00068 25.0 7.3 37 77-113 9-45 (81)
21 3q4f_C DNA repair protein XRCC 72.1 6.9 0.00024 31.2 5.5 30 87-116 153-182 (186)
22 1t2k_D Cyclic-AMP-dependent tr 71.4 16 0.00056 23.0 7.0 37 81-117 22-58 (61)
23 2v66_B Nuclear distribution pr 70.7 27 0.00093 25.4 8.0 45 77-121 13-61 (111)
24 4gif_A Polycystic kidney disea 69.7 15 0.00051 23.2 5.6 37 72-108 5-41 (45)
25 1jnm_A Proto-oncogene C-JUN; B 68.8 11 0.00038 23.9 5.1 34 82-115 23-56 (62)
26 2zxx_A Geminin; coiled-coil, c 67.7 25 0.00086 24.4 7.0 47 72-121 21-67 (79)
27 3s9g_A Protein hexim1; cyclin 66.8 26 0.0009 25.6 7.2 39 78-116 55-93 (104)
28 2fxo_A Myosin heavy chain, car 66.7 32 0.0011 24.6 7.9 48 74-121 69-116 (129)
29 2dgc_A Protein (GCN4); basic d 64.9 13 0.00043 24.2 4.8 30 88-117 30-59 (63)
30 3gp4_A Transcriptional regulat 64.7 22 0.00074 25.7 6.5 29 76-104 90-118 (142)
31 1dh3_A Transcription factor CR 64.2 11 0.00037 23.9 4.3 27 89-115 23-49 (55)
32 1gu4_A CAAT/enhancer binding p 63.8 9.9 0.00034 26.0 4.2 37 85-121 26-62 (78)
33 1hjb_A Ccaat/enhancer binding 63.7 9.6 0.00033 26.6 4.2 16 103-118 58-73 (87)
34 3htk_A Structural maintenance 62.8 24 0.00082 21.7 6.1 41 74-114 19-59 (60)
35 1dip_A Delta-sleep-inducing pe 62.3 10 0.00035 26.5 4.1 26 92-117 19-44 (78)
36 3o0z_A RHO-associated protein 61.8 44 0.0015 26.0 8.1 38 84-121 93-130 (168)
37 3he5_B Synzip2; heterodimeric 61.5 16 0.00054 23.5 4.6 28 94-121 9-36 (52)
38 2wvr_A Geminin; DNA replicatio 61.3 33 0.0011 27.7 7.5 29 92-120 119-147 (209)
39 1nkp_B MAX protein, MYC proto- 60.8 11 0.00039 24.8 4.1 27 95-121 54-80 (83)
40 2p4w_A Transcriptional regulat 60.5 25 0.00087 26.7 6.5 39 85-123 126-164 (202)
41 1wlq_A Geminin; coiled-coil; 2 60.3 36 0.0012 23.9 6.7 46 72-120 25-70 (83)
42 1go4_E MAD1 (mitotic arrest de 60.2 18 0.00063 25.9 5.3 34 88-121 12-45 (100)
43 3hnw_A Uncharacterized protein 60.0 49 0.0017 24.3 8.0 44 78-121 79-122 (138)
44 1no4_A Late, head morphogenesi 59.6 29 0.00098 24.8 6.1 51 71-130 19-69 (97)
45 2v71_A Nuclear distribution pr 59.0 49 0.0017 26.0 8.0 25 97-121 90-114 (189)
46 3okq_A BUD site selection prot 58.8 42 0.0014 25.5 7.3 46 76-121 23-80 (141)
47 2spc_A Spectrin; cytoskeleton; 58.4 35 0.0012 22.2 7.2 45 77-121 39-83 (107)
48 1gd2_E Transcription factor PA 56.9 41 0.0014 22.5 6.4 41 76-116 24-64 (70)
49 1svf_A Protein (fusion glycopr 55.9 42 0.0014 22.3 6.5 44 79-122 12-55 (64)
50 2fyz_A Fusion protein, fusion 55.8 39 0.0013 22.4 6.0 43 80-122 16-58 (63)
51 1nkp_B MAX protein, MYC proto- 55.7 17 0.00057 24.0 4.2 42 73-114 39-80 (83)
52 1x79_B RAB GTPase binding effe 55.4 14 0.00047 27.1 4.0 33 86-118 75-108 (112)
53 2dgc_A Protein (GCN4); basic d 54.1 20 0.00068 23.2 4.2 29 94-122 29-57 (63)
54 3q8t_A Beclin-1; autophagy, AT 53.8 52 0.0018 22.8 7.4 44 75-118 19-63 (96)
55 3rrk_A V-type ATPase 116 kDa s 52.4 35 0.0012 27.2 6.3 38 85-122 96-136 (357)
56 2xdj_A Uncharacterized protein 52.1 47 0.0016 22.7 6.1 46 79-124 25-70 (83)
57 2yy0_A C-MYC-binding protein; 51.0 35 0.0012 21.6 4.9 22 78-99 23-44 (53)
58 3oja_A Leucine-rich immune mol 50.3 61 0.0021 26.6 7.6 28 95-122 435-462 (487)
59 3oja_B Anopheles plasmodium-re 50.1 66 0.0023 26.9 7.9 22 98-119 512-533 (597)
60 1go4_E MAD1 (mitotic arrest de 49.4 22 0.00076 25.5 4.2 27 95-121 12-38 (100)
61 4e18_B Catenin alpha-1; four h 49.1 21 0.00072 23.7 3.8 25 72-96 29-53 (59)
62 3m9b_A Proteasome-associated A 48.5 19 0.00066 29.6 4.2 39 85-123 58-96 (251)
63 3oja_B Anopheles plasmodium-re 48.4 56 0.0019 27.3 7.2 31 90-120 525-555 (597)
64 2oqq_A Transcription factor HY 46.3 52 0.0018 20.5 5.5 26 90-115 5-30 (42)
65 1am9_A Srebp-1A, protein (ster 46.2 51 0.0017 21.9 5.5 30 91-120 46-75 (82)
66 1s35_A Beta-I spectrin, spectr 45.3 81 0.0028 22.5 7.3 50 72-121 138-187 (214)
67 1nlw_A MAD protein, MAX dimeri 45.2 35 0.0012 22.9 4.5 39 78-119 40-78 (80)
68 1nkp_A C-MYC, MYC proto-oncoge 44.7 53 0.0018 22.2 5.5 43 76-121 43-85 (88)
69 1deq_A Fibrinogen (alpha chain 44.4 41 0.0014 29.4 5.8 45 72-123 51-95 (390)
70 1jnm_A Proto-oncogene C-JUN; B 44.0 47 0.0016 20.9 4.8 27 96-122 23-49 (62)
71 2yy0_A C-MYC-binding protein; 43.4 34 0.0012 21.6 4.0 28 82-109 20-47 (53)
72 2wt7_A Proto-oncogene protein 43.1 62 0.0021 20.5 7.0 33 83-115 25-57 (63)
73 2p90_A Hypothetical protein CG 43.0 13 0.00046 30.5 2.5 41 81-121 222-262 (319)
74 3efg_A Protein SLYX homolog; x 42.6 65 0.0022 21.6 5.6 47 77-123 17-63 (78)
75 1ci6_A Transcription factor AT 41.7 67 0.0023 20.5 6.2 19 96-114 31-49 (63)
76 1l8d_A DNA double-strand break 40.8 55 0.0019 22.0 5.1 37 86-122 69-105 (112)
77 2wuj_A Septum site-determining 40.7 30 0.001 21.9 3.4 26 90-115 29-54 (57)
78 3bux_B E3 ubiquitin-protein li 40.4 42 0.0014 28.8 5.2 18 108-125 87-104 (329)
79 3e35_A Uncharacterized protein 40.3 25 0.00086 29.3 3.8 49 73-121 214-268 (325)
80 1wp7_A Fusion protein; fusion 39.9 24 0.00084 25.1 3.2 43 83-125 8-50 (89)
81 1hjb_A Ccaat/enhancer binding 39.0 94 0.0032 21.5 6.6 28 93-120 41-68 (87)
82 3a7o_A Autophagy protein 16; c 38.7 81 0.0028 21.8 5.6 41 81-121 32-72 (75)
83 3mtu_E Head morphogenesis prot 38.5 96 0.0033 21.4 7.5 48 71-121 23-74 (77)
84 1gu4_A CAAT/enhancer binding p 38.4 60 0.002 22.0 4.9 29 93-121 41-69 (78)
85 1joc_A EEA1, early endosomal a 38.2 1.1E+02 0.0036 21.8 7.4 38 84-121 21-58 (125)
86 3oa7_A Head morphogenesis prot 37.7 1.6E+02 0.0054 23.7 7.9 49 71-122 23-71 (206)
87 3n7n_E Monopolin complex subun 37.3 7.1 0.00024 28.2 0.0 36 78-113 40-75 (95)
88 1ez3_A Syntaxin-1A; three heli 37.2 92 0.0032 21.0 5.8 31 77-107 8-38 (127)
89 3tso_C RAB11 family-interactin 36.9 85 0.0029 21.6 5.4 19 81-99 35-53 (75)
90 3m9b_A Proteasome-associated A 36.0 64 0.0022 26.5 5.5 39 78-116 58-96 (251)
91 2w6b_A RHO guanine nucleotide 35.6 59 0.002 21.4 4.3 25 93-117 8-32 (56)
92 1t2k_D Cyclic-AMP-dependent tr 35.3 82 0.0028 19.7 5.6 27 92-118 26-52 (61)
93 2wt7_A Proto-oncogene protein 34.9 86 0.0029 19.8 5.6 25 97-121 25-49 (63)
94 1nkp_A C-MYC, MYC proto-oncoge 34.9 78 0.0027 21.4 5.0 44 72-115 43-86 (88)
95 2dfs_A Myosin-5A; myosin-V, in 34.8 1.2E+02 0.0041 29.0 7.8 25 90-114 986-1010(1080)
96 3viq_B Mating-type switching p 34.4 1.1E+02 0.0038 21.3 5.8 43 76-121 3-47 (85)
97 2wt7_B Transcription factor MA 34.3 91 0.0031 21.8 5.4 38 80-117 47-84 (90)
98 2wg5_A General control protein 34.3 49 0.0017 23.1 4.1 27 83-109 9-35 (109)
99 1joc_A EEA1, early endosomal a 34.1 70 0.0024 22.7 4.9 31 75-105 5-35 (125)
100 2wam_A RV2714, conserved hypot 33.6 37 0.0013 28.7 3.8 40 82-121 263-302 (351)
101 1t6f_A Geminin; coiled-coil, c 33.4 46 0.0016 20.3 3.2 21 96-116 15-35 (37)
102 2wt7_B Transcription factor MA 33.3 1.2E+02 0.0042 21.1 6.7 34 77-110 51-84 (90)
103 3i00_A HIP-I, huntingtin-inter 33.2 1.3E+02 0.0046 21.7 6.3 28 96-123 55-82 (120)
104 1jcd_A Major outer membrane li 33.1 95 0.0032 19.7 4.9 28 83-110 6-33 (52)
105 2q6q_A Spindle POLE BODY compo 33.1 1.2E+02 0.0041 20.9 7.2 38 82-122 21-58 (74)
106 1a93_B MAX protein, coiled coi 32.8 76 0.0026 18.9 4.1 26 95-120 7-32 (34)
107 3ghg_A Fibrinogen alpha chain; 32.7 96 0.0033 28.3 6.5 46 70-122 46-91 (562)
108 2fxo_A Myosin heavy chain, car 32.7 1.3E+02 0.0045 21.3 8.0 47 75-121 77-123 (129)
109 3cve_A Homer protein homolog 1 32.6 1.1E+02 0.0039 20.6 5.7 27 84-110 17-43 (72)
110 2dfs_A Myosin-5A; myosin-V, in 32.3 1.2E+02 0.0042 28.8 7.5 21 102-122 1023-1043(1080)
111 3a2a_A Voltage-gated hydrogen 32.1 1.1E+02 0.0038 20.2 5.4 38 81-118 11-48 (58)
112 2jee_A YIIU; FTSZ, septum, coi 32.0 1.3E+02 0.0043 20.8 8.2 36 82-117 28-63 (81)
113 3cvf_A Homer-3, homer protein 32.0 1.2E+02 0.0042 20.7 5.7 26 85-110 24-49 (79)
114 1lwu_C Fibrinogen gamma chain; 31.9 1.7E+02 0.0057 24.4 7.5 45 79-123 10-54 (323)
115 3h3m_A Flagellar protein FLIT; 31.7 1.1E+02 0.0037 22.2 5.6 48 70-117 71-119 (126)
116 4ati_A MITF, microphthalmia-as 31.1 39 0.0013 24.1 3.1 46 76-121 65-110 (118)
117 3bny_A Aristolochene synthase; 31.0 55 0.0019 25.3 4.2 23 111-133 288-313 (320)
118 1vf6_A PALS-1, PALS1-associate 30.6 45 0.0015 23.5 3.2 21 79-99 39-59 (83)
119 1jy2_O Fibrinogen beta chain; 30.1 60 0.0021 21.3 3.6 30 71-100 25-54 (56)
120 3mud_A DNA repair protein XRCC 29.9 1.6E+02 0.0055 23.0 6.6 39 81-122 135-173 (175)
121 4ehp_B Catenin alpha-1; adhere 29.5 57 0.002 23.8 3.8 30 67-96 50-79 (111)
122 2v71_A Nuclear distribution pr 29.2 2E+02 0.007 22.4 8.1 42 76-117 44-85 (189)
123 3ol1_A Vimentin; structural ge 29.1 1.5E+02 0.0052 20.9 7.8 48 74-121 34-81 (119)
124 3op0_A Signal transduction pro 29.1 68 0.0023 27.4 4.7 24 108-131 67-94 (323)
125 3kb9_A EPI-isozizaene synthase 28.9 79 0.0027 25.7 5.0 20 110-129 332-354 (382)
126 2jn6_A Protein CGL2762, transp 28.8 9.3 0.00032 24.9 -0.5 21 95-115 66-86 (97)
127 3a7p_A Autophagy protein 16; c 28.6 2E+02 0.0067 22.0 8.0 15 46-60 38-52 (152)
128 3a7m_A Flagellar protein FLIT; 28.5 1.6E+02 0.0056 21.0 6.7 49 69-117 57-106 (122)
129 3mq7_A Bone marrow stromal ant 28.3 1.2E+02 0.0041 22.6 5.4 25 83-107 55-83 (121)
130 3he5_A Synzip1; heterodimeric 27.5 68 0.0023 20.3 3.4 16 96-111 11-26 (49)
131 1ez3_A Syntaxin-1A; three heli 27.4 1.3E+02 0.0045 20.2 5.3 22 93-114 10-31 (127)
132 4h22_A Leucine-rich repeat fli 27.1 1.8E+02 0.0061 21.0 7.9 47 74-120 23-69 (103)
133 4e61_A Protein BIM1; EB1-like 26.3 1.7E+02 0.0058 21.1 5.8 33 79-111 9-41 (106)
134 3gpv_A Transcriptional regulat 25.9 1.8E+02 0.0062 20.7 6.3 34 88-121 95-128 (148)
135 4emc_A Monopolin complex subun 25.8 1.9E+02 0.0066 22.9 6.5 36 77-112 23-58 (190)
136 2zvf_A Alanyl-tRNA synthetase; 25.8 39 0.0013 24.2 2.4 26 92-117 29-54 (171)
137 2oa5_A Hypothetical protein BQ 24.8 39 0.0013 24.8 2.1 24 97-120 10-33 (110)
138 3lay_A Zinc resistance-associa 24.6 2E+02 0.0069 21.9 6.3 37 79-115 90-133 (175)
139 1ykh_B RNA polymerase II holoe 24.6 58 0.002 23.7 3.1 25 99-123 103-127 (132)
140 2y1n_A E3 ubiquitin-protein li 24.5 64 0.0022 27.7 3.8 17 107-123 62-78 (389)
141 3nkz_A Flagellar protein FLIT; 24.4 1.5E+02 0.005 21.3 5.2 48 70-117 61-109 (123)
142 3uul_A Utrophin; spectrin repe 24.0 1.5E+02 0.005 19.0 7.6 51 71-121 33-90 (118)
143 1cun_A Protein (alpha spectrin 23.7 1.9E+02 0.0066 20.3 6.2 48 72-119 137-184 (213)
144 3bbp_D GRIP and coiled-coil do 23.7 64 0.0022 22.1 2.9 48 76-123 17-64 (71)
145 2qlz_A Transcription factor PF 23.5 1.3E+02 0.0046 23.3 5.2 34 89-122 117-150 (232)
146 3fb2_A Spectrin alpha chain, b 23.5 94 0.0032 22.6 4.1 45 75-119 153-197 (218)
147 1hlo_A Protein (transcription 23.4 1.3E+02 0.0045 19.5 4.4 16 96-111 65-80 (80)
148 1yke_B RNA polymerase II holoe 23.3 56 0.0019 24.5 2.9 33 91-123 95-127 (151)
149 3s4r_A Vimentin; alpha-helix, 23.2 1.5E+02 0.0051 20.2 4.9 29 84-112 12-40 (93)
150 4etp_A Kinesin-like protein KA 23.0 3.3E+02 0.011 22.8 8.0 51 72-122 8-58 (403)
151 3hh0_A Transcriptional regulat 23.0 2.1E+02 0.0072 20.4 6.5 13 111-123 121-133 (146)
152 3oja_A Leucine-rich immune mol 22.9 3.1E+02 0.011 22.4 7.7 32 88-119 435-466 (487)
153 2w6a_A ARF GTPase-activating p 22.9 1.8E+02 0.006 19.5 7.0 45 80-124 12-56 (63)
154 1d7m_A Cortexillin I; coiled-c 22.7 1.5E+02 0.0051 21.4 4.8 21 72-92 16-36 (101)
155 3uun_A Dystrophin; triple heli 22.6 1.6E+02 0.0053 18.8 7.7 52 71-122 33-91 (119)
156 1nlw_A MAD protein, MAX dimeri 22.6 1.7E+02 0.006 19.3 5.1 36 75-110 41-76 (80)
157 1ik9_A DNA repair protein XRCC 21.9 2.7E+02 0.0092 21.7 6.7 25 83-107 134-158 (213)
158 1di1_A Aristolochene synthase; 21.9 1.5E+02 0.005 22.4 5.0 19 111-129 275-296 (300)
159 2w83_C C-JUN-amino-terminal ki 21.9 2E+02 0.0069 19.8 7.7 45 77-121 12-63 (77)
160 1aq5_A Matrilin-1, CMP, cartil 21.8 1.6E+02 0.0054 18.6 4.8 24 77-100 19-42 (47)
161 2j5u_A MREC protein; bacterial 21.5 52 0.0018 26.0 2.5 29 77-109 29-57 (255)
162 1p9i_A Cortexillin I/GCN4 hybr 21.3 99 0.0034 17.9 3.0 20 104-123 8-27 (31)
163 1ps1_A Pentalenene synthase; a 21.2 2E+02 0.0067 22.2 5.7 24 111-134 287-314 (337)
164 1gmj_A ATPase inhibitor; coile 20.9 2.2E+02 0.0075 19.8 7.0 39 81-122 40-78 (84)
165 1m1j_C Fibrinogen gamma chain; 20.6 2.8E+02 0.0095 23.8 7.0 52 72-123 81-133 (409)
166 2p22_A Suppressor protein STP2 20.1 3E+02 0.01 21.1 6.5 43 76-118 51-93 (174)
No 1
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=93.17 E-value=0.33 Score=31.39 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
+++-.|.....-|+.||.+.+.-|.++++|++-|+..+.
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 456678888888999999999999999999999887653
No 2
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=93.13 E-value=0.28 Score=34.27 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH----hh-cccccccCCCCCCC
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL----MS-ASSVFQSTSPKSGK 137 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL----Ms-sS~vfqst~~~~kk 137 (138)
-.|++||+.++.+|..|..--.|| +-|++||+|| |- +.+++|.+...+||
T Consensus 14 ltreELi~l~lk~~~~l~~k~~~v--------------~eLEdYID~LLvRVME~~P~iLq~p~~~~kk 68 (75)
T 3tso_C 14 LTYEEVLQELVKHKELLRRKDTHI--------------RELEDYIDNLLVRVMEETPSILRVPYEPSRK 68 (75)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHCGGGGBSSCCC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCcHHhhCCCccccc
Confidence 347789988888887766433333 3489999999 43 78889876654443
No 3
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=92.37 E-value=0.44 Score=35.07 Aligned_cols=43 Identities=37% Similarity=0.438 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 74 EEKARLISQVLELQNTLDDL--------------SQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L--------------~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
..|.+||++-+.|-.-+..| -.||.+...|.++|+.||+.|-+
T Consensus 30 mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 30 MSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 35778888887776666554 34888899999999999998864
No 4
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=91.85 E-value=0.84 Score=29.78 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
|.+=..++..|+.-+..|-.+..+.+.++..|+.|+.+|.+.|-
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556678889999999999999999999999999999988764
No 5
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.67 E-value=0.29 Score=33.17 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
.-+..|=.+|.....++..|..||++|..+|..|..-
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677788888999999999999999998753
No 6
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.63 E-value=1.5 Score=33.04 Aligned_cols=46 Identities=35% Similarity=0.422 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+..-.+++.+||+-+..|-+.+...-.|.+.|+.+|++|+--|..-
T Consensus 66 kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 66 KAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 3444677999999999999999999999999999999999877543
No 7
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=88.33 E-value=2.5 Score=27.45 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
|++++.+....+.-+..|=.....+|+.+.||+-||-.|+.-+|=
T Consensus 2 ree~LeqWv~~Rkk~eeler~lrk~kk~iKklEdeNPWLGNIkGI 46 (50)
T 1a92_A 2 REDILEQWVSGRKKLEELERDLRKLKKKIKKLEEDNPWLGNIKGI 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhhhhh
Confidence 678899999999999999999999999999999999999876653
No 8
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=84.94 E-value=0.7 Score=34.21 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.|..|+|.+....+.|..=-.-||+||+||=.
T Consensus 73 ni~~elD~LEa~A~~l~~~~~elq~~idn~n~ 104 (109)
T 2ieq_A 73 NLSSELKQLEAKTASLFQTTVELQGLIDQINS 104 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999855
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.33 E-value=5.7 Score=29.47 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+++.+++..|..-|-.+--+.++++.+.++|+.+|..|+.=|..|
T Consensus 85 ~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 85 ENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777788888888888888888888888888777
No 10
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=84.07 E-value=0.61 Score=34.46 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH----hh-cccccccCCCCCC
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL----MS-ASSVFQSTSPKSG 136 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL----Ms-sS~vfqst~~~~k 136 (138)
.-.|++||+.++.++..| .+-+.+=+-|++||++| |. +.+++|.+....|
T Consensus 45 ~lTrdELI~lllk~e~~l--------------~~kd~~IrELEDYID~LLvRVME~tP~ILqvpy~~~~ 99 (107)
T 2gzd_C 45 SLTYEEVLQELVKHKELL--------------RRKDTHIRELEDYIDNLLVRVMEETPSILRVPYEPSR 99 (107)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHHHHHHHCGGGGBSSCCC--
T ss_pred ccCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhCchhhhCCCcccc
Confidence 345667777666555333 23333345699999999 54 7788886554433
No 11
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=82.39 E-value=9.2 Score=25.85 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+.++=..|.++++.|+.+|.++..+||.|-....-++..-..=.+-|+-||.
T Consensus 4 S~EEF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m~kll~ 55 (64)
T 3hrn_A 4 SYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLD 55 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 5677788999999999999999999999987776666655555555666654
No 12
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=81.26 E-value=1.8 Score=29.09 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=12.0
Q ss_pred hhhhHhHHHHHHHHh
Q psy5453 108 RSENQVLGQYIENLM 122 (138)
Q Consensus 108 ~sENq~Lq~YI~NLM 122 (138)
+..|+-|++||++|.
T Consensus 36 ee~n~~Le~YID~LL 50 (64)
T 2hv8_D 36 EEINFRLQDYIDRII 50 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 335689999999994
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=80.25 E-value=5 Score=25.20 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
.|-.++++|+.....|=+||. -|.+||++|.+-+-|
T Consensus 7 eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLS-------TLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHhcC
Confidence 355566666665555555554 577888888886643
No 14
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=80.12 E-value=2.4 Score=26.40 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=11.3
Q ss_pred hhHhHHHHHHHHh
Q psy5453 110 ENQVLGQYIENLM 122 (138)
Q Consensus 110 ENq~Lq~YI~NLM 122 (138)
.|+-|++||++|.
T Consensus 16 ~n~~Le~YID~LL 28 (42)
T 2d7c_C 16 INFRLQDYIDRII 28 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5799999999994
No 15
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=79.92 E-value=9.6 Score=26.27 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
....+.++..|.++++..+.|...|+..++.++-=|+.|
T Consensus 15 ~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 15 SNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334455667777777777777777777777776666655
No 16
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=76.25 E-value=4.8 Score=31.73 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
..|+-|+-+++++.+.++++.+|..||+-|+.=
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888753
No 17
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=75.77 E-value=6.1 Score=24.33 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVK 101 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VK 101 (138)
+.++=..|.++++.|+.+|.++..+||.|-
T Consensus 5 s~eeF~~L~rRVlqlE~~l~gI~S~idav~ 34 (39)
T 3te3_A 5 SGEEFYMLTRRVLQLETVLEGVVSQIDAVG 34 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778899999999999999999999873
No 18
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=75.04 E-value=15 Score=25.88 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=29.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 84 LELQNTLD---DLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 84 l~LQ~sL~---~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
++|.++|. .|-.+|+..++|+..|+++|+.|..-++-.
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 477789999999999999999998877643
No 19
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=74.35 E-value=4.6 Score=25.12 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQR 96 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~R 96 (138)
.+.|++++.+...+++.|++|+..
T Consensus 11 ~~rkerIv~eCnavrqALQdLlse 34 (40)
T 4e17_B 11 DDRRERIVAECNAVRQALQDLLSE 34 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999864
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.73 E-value=20 Score=24.99 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQV 113 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~ 113 (138)
++|-..|..+=++...|=-+|++.|+++..|..+|+-
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666666554443333
No 21
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=72.05 E-value=6.9 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 87 QNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 87 Q~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
++-+.-.+.+|.+.+.+|.+|..||+-|+.
T Consensus 153 rELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 153 RELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677999999999999999999974
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.37 E-value=16 Score=22.99 Aligned_cols=37 Identities=30% Similarity=0.269 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
..+..|+.....|...-...+.+...|..|+..|.+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666544
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.68 E-value=27 Score=25.40 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDL----SQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L----~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
++|..++-.++.-+... ..-+-..+.|..+|...|+.|+.||..|
T Consensus 13 ~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 13 QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 3456677888889999999999999887
No 24
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=69.69 E-value=15 Score=23.21 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLR 108 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~ 108 (138)
+.++=..|.++++.|+.+|.++..+||.|-....-++
T Consensus 5 s~eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~E 41 (45)
T 4gif_A 5 SGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLE 41 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788999999999999999999999976554443
No 25
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=68.78 E-value=11 Score=23.93 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 82 QVLELQNTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 82 eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
.+..|++....|...-...+.+...|..|+..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 26
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=67.73 E-value=25 Score=24.38 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
=++.|..-+.+++.=-. .|-.+|+.-++|+.+|+.||+.|..-.+..
T Consensus 21 lAE~RR~AL~eaL~EN~---~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 21 VAEQRRKALYEALKENE---KLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444333 355688899999999999999887665544
No 27
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.77 E-value=26 Score=25.58 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
+|....+..-..+..|-..|+..+.||..|..||++-.+
T Consensus 55 rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 55 RLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455555566668999999999999999999999997653
No 28
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.73 E-value=32 Score=24.57 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+..++|+..-..|..-|.+|..|++...+.+..|.++-+-|++=|..|
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777778888888888887777777777777776666655
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.94 E-value=13 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
+-+..|-.+|...+.++..|.++...|.+-
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777776666543
No 30
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=64.69 E-value=22 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEEN 104 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~ 104 (138)
+++|.+++..||..+..|-.+++..++..
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 31
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=64.21 E-value=11 Score=23.88 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
-+..|-.+|.....||..|..++..|+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666554
No 32
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=63.80 E-value=9.9 Score=25.98 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+-+-+=+.=-.|..+.+...+.|+.||..|..-|..|
T Consensus 26 AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444455555555555555555444
No 33
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.71 E-value=9.6 Score=26.58 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=6.4
Q ss_pred HHHHHhhhhHhHHHHH
Q psy5453 103 ENLRLRSENQVLGQYI 118 (138)
Q Consensus 103 E~~KL~sENq~Lq~YI 118 (138)
+.+.|+.|..+|..++
T Consensus 58 ~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 58 KVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444443
No 34
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=62.78 E-value=24 Score=21.71 Aligned_cols=41 Identities=10% Similarity=0.388 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L 114 (138)
+....+..+...++..|..+..-+..++++..++++..+|+
T Consensus 19 ~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 19 EKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556667778888888888888888888887776654
No 35
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=62.25 E-value=10 Score=26.53 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
-|-++|.+..+.+.+|+.||.+|...
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777788999999988764
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=61.83 E-value=44 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+||.-+..|-..++.+|.-..++..+|+-|++-|..|
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666777888999999999887
No 37
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=61.50 E-value=16 Score=23.51 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 94 SQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 94 ~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
-.+|-..|+++.+|+..-|-|...|.||
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianl 36 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANL 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHH
Confidence 3467778888999999999999999888
No 38
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=61.33 E-value=33 Score=27.72 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
.|-.+|+..++|...|+.||+-|+..++-
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667888888888888888888765443
No 39
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.77 E-value=11 Score=24.84 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 95 QRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.++...+.+.+.|+.+|+.|..=|..|
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445667777777777777666544
No 40
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=60.47 E-value=25 Score=26.69 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.|...|..|..++..+++....+..--..++.||.+||.
T Consensus 126 ~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~ 164 (202)
T 2p4w_A 126 ELAEFLHELNERIREIIEEKRELEEARILIETYIENTMR 164 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 677788888888888888888899999999999999986
No 41
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=60.30 E-value=36 Score=23.91 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
=++.|..-+.+++.=-. .|-.+|+..++|...|+.||+.|+.-.+-
T Consensus 25 lAE~Rr~AL~eaL~EN~---~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 25 VAEQRRKALYEALKENE---KLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444444433222 35668888899999999999998865543
No 42
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.17 E-value=18 Score=25.95 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.+..|-.+|++.+.|+++|+.++..|-.-+++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788899999999999999999999888884
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.97 E-value=49 Score=24.34 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.|.+++..+..-+.+|-..+-..+...+.++.+++-|+.=|+-|
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555555555555444443
No 44
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=59.59 E-value=29 Score=24.83 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhccccccc
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQS 130 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqs 130 (138)
..+.+|.++++|... ..-..+......-.-++||..||.-| ..++|.+|..
T Consensus 19 l~~serte~lqqlr~---~y~s~~se~~dlt~s~ekl~ae~~dl------ivsnsklfrq 69 (97)
T 1no4_A 19 LAQSERTEALQQLRV---NYGSFVSEYNDLTKSHEKLAAEKDDL------IVSNSKLFRQ 69 (97)
T ss_dssp SCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHhccCCe------eeecHHHHHH
Confidence 677888888876543 33344555666777889999998755 3566666643
No 45
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=59.03 E-value=49 Score=25.97 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 97 VDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 97 Vd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+...+.+...|...|+.|+.||..|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566667777777777665
No 46
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=58.84 E-value=42 Score=25.54 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLS------------QRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~------------~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
=+.|+..+-.||+...+|- ..++.|.++...+..+=+-|++||...
T Consensus 23 sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~e 80 (141)
T 3okq_A 23 SDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTE 80 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3568899999999998874 346788999999999999999999764
No 47
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=58.39 E-value=35 Score=22.22 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.|+++-..++..+.+.-.||..|...-++|-.++.|-.+-|..-
T Consensus 39 ~~Llkkh~~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r 83 (107)
T 2spc_A 39 EALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEK 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 468999999999999999999999999999999998877766543
No 48
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.94 E-value=41 Score=22.46 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
|++=.+++.+|...+..|-.....+..|+..|..++..|+.
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666566666666666666666554
No 49
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=55.93 E-value=42 Score=22.30 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.-+.|+.|.++|..=-.=|.+|+.....|--==+-||+||++-+
T Consensus 12 Na~~I~~LK~Si~~TNeAV~el~~g~~~lavAv~~lQd~IN~~i 55 (64)
T 1svf_A 12 NAAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINSVV 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888888999998854
No 50
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=55.82 E-value=39 Score=22.37 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
-+.|+.|.+++..=-.=|.+|+.....|--==+-||+||++-+
T Consensus 16 A~~I~~LK~Si~~TNeAV~el~~g~~~lavAv~~iQd~IN~~i 58 (63)
T 2fyz_A 16 ARAIAAMKNSIQATNRAVFEVKEGTQRLAIAVQAIQDHINTIM 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667888899988888889999888888888888999998754
No 51
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=55.66 E-value=17 Score=24.03 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q psy5453 73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L 114 (138)
...=..-+.-|..||.....|-..++..+.++..|+..-.-|
T Consensus 39 ~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 39 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344467778899999999999999999999998776544
No 52
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.42 E-value=14 Score=27.10 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHH-HHH
Q psy5453 86 LQNTLDDLSQRVDSVKEENLRLRSENQVLG-QYI 118 (138)
Q Consensus 86 LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq-~YI 118 (138)
.|..|.-|..-=+.|..+..+|..||++|+ .|.
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 344455555555677777899999999997 664
No 53
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.09 E-value=20 Score=23.25 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 94 SQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 94 ~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
..++.+...+.+.|+++|..|..-|+.|-
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888887763
No 54
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=53.81 E-value=52 Score=22.77 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHhHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLR-SENQVLGQYI 118 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~-sENq~Lq~YI 118 (138)
+..+|++++..|...=..|-.-+..++.+..+|. .|.+|..+|=
T Consensus 19 eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn 63 (96)
T 3q8t_A 19 EEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455666776766666667777777777777774 4566666663
No 55
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=52.42 E-value=35 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH---HHHHh
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQY---IENLM 122 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y---I~NLM 122 (138)
.++..+..+.++|.+..+...+|+++.+-|+.+ |+.|.
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 444557777778888888888888888888888 77764
No 56
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.06 E-value=47 Score=22.72 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
|..++..||.-+..|=..|++..-+.++|....+-+..=|++.++.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555555555555555555555555444443334555544
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.96 E-value=35 Score=21.57 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDS 99 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~ 99 (138)
+|.++..+||.-...|..++++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333333
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.32 E-value=61 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 95 QRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.-.+..+++.++|+.||+-|..-|+++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3444557777777777777777777764
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.06 E-value=66 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhHhHHHHHH
Q psy5453 98 DSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 98 d~VKeE~~KL~sENq~Lq~YI~ 119 (138)
..+++.+.+++.+++.+++.++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhh
Confidence 3344444444444444444443
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.43 E-value=22 Score=25.51 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 95 QRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
..+..++++.+.|+.||.-|.+-|+.|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777766
No 61
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=49.05 E-value=21 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQR 96 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~R 96 (138)
-.+.|++++.+...+++.|++|+..
T Consensus 29 r~~rke~Iv~eCnavrqALQdLlsE 53 (59)
T 4e18_B 29 RDDRRERIVAECNAVRQALQDLLSE 53 (59)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999864
No 62
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=48.47 E-value=19 Score=29.61 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.|+..+..|..|....+++...++.|...|+.=|+-|.+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444444444444444444444433
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.38 E-value=56 Score=27.30 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
++.+-+.+++-+++.+++++|..-|..+++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3334444444444555555555555554443
No 64
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.27 E-value=52 Score=20.54 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
|.+|=.|+.+...-+..|++---+||
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665655
No 65
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=46.16 E-value=51 Score=21.88 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 91 DDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 91 ~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
..-++-|...+.++..|+.||.-|+.-|..
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445666666666677777777666654
No 66
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=45.32 E-value=81 Score=22.49 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+...=+.|+++-..++..|.+.-.+|..+...-.+|-..+.+-...|...
T Consensus 138 ~~~~v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~~ 187 (214)
T 1s35_A 138 SLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEK 187 (214)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 45666789999999999999999999999999999999988887777654
No 67
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.20 E-value=35 Score=22.86 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.+++.+.+ -+..|-.+......|.+.|+.+|+.|+.-+.
T Consensus 40 ~iL~kA~~---yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 40 SLLTKAKL---HIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35554443 2333444566677778888888888887665
No 68
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.69 E-value=53 Score=22.21 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
|..+++.+.+ -+..|-.+......+.+.|+.+|+.|..=|..|
T Consensus 43 K~~iL~~A~~---YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 43 KVVILKKATA---YILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555443 233344455555566667777777777776655
No 69
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.44 E-value=41 Score=29.44 Aligned_cols=45 Identities=9% Similarity=0.201 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
+...|..|.++- +.+-.||++++.+.+.+.+-+..-..|+.++|.
T Consensus 51 GCrLqg~Ldk~e-------r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~ 95 (390)
T 1deq_A 51 GCRMKGLIDEVD-------QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVE 95 (390)
T ss_pred cchHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555555444 567778888888888888888888888888865
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.03 E-value=47 Score=20.93 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 96 RVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 96 RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
++.+...+.+.|+++|.-|..-|..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555543
No 71
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.43 E-value=34 Score=21.61 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5453 82 QVLELQNTLDDLSQRVDSVKEENLRLRS 109 (138)
Q Consensus 82 eil~LQ~sL~~L~~RVd~VKeE~~KL~s 109 (138)
++-.|+.-+..|-.|+...+++|+.|++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554
No 72
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.11 E-value=62 Score=20.52 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
+..|++-...|-..-...+.+...|..|...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 73
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=42.96 E-value=13 Score=30.51 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.++..|.=.+..|-.+.++++++.+++..+|+-+.+||..|
T Consensus 222 ~~l~gl~id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~L 262 (319)
T 2p90_A 222 ADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGAL 262 (319)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444578899999999999999999999999999887
No 74
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.56 E-value=65 Score=21.64 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
++|.-++--+.++++.|-.=|-.++.+.++|+..-+.|.+-+..+-.
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44666677778899999999999999999999999999998888764
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.72 E-value=67 Score=20.51 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhhhHhH
Q psy5453 96 RVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 96 RVd~VKeE~~KL~sENq~L 114 (138)
++.+++.+|..|+.+-..|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 76
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.76 E-value=55 Score=22.04 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 86 LQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 86 LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.+..+..+-.++..++.+...|+.+-+.|...|..++
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666666666666665443
No 77
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=40.74 E-value=30 Score=21.86 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
|+.+..-++....|+..|+.+++-|+
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554443
No 78
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=40.36 E-value=42 Score=28.76 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.6
Q ss_pred hhhhHhHHHHHHHHhhcc
Q psy5453 108 RSENQVLGQYIENLMSAS 125 (138)
Q Consensus 108 ~sENq~Lq~YI~NLMssS 125 (138)
=++|+||+-||+|||+.+
T Consensus 87 L~~~ey~~i~i~nL~~Kc 104 (329)
T 3bux_B 87 LGENEYFRVFMENLMKKT 104 (329)
T ss_dssp HHHCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 379999999999999754
No 79
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=40.30 E-value=25 Score=29.30 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-hHhHHHHHHHH
Q psy5453 73 QEEKARLIS---QVLELQNT--LDDLSQRVDSVKEENLRLRSE-NQVLGQYIENL 121 (138)
Q Consensus 73 ~eeKe~Li~---eil~LQ~s--L~~L~~RVd~VKeE~~KL~sE-Nq~Lq~YI~NL 121 (138)
..+=..|++ ++..|.=. +..|-.+.++++.+.+++-.+ |.-+++||..|
T Consensus 214 P~AA~alL~~L~~~~gl~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~L 268 (325)
T 3e35_A 214 PDAALTVLEAITAATGLVLPGIAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGL 268 (325)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 334444554 34444434 889999999999999999999 99999999998
No 80
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=39.89 E-value=24 Score=25.12 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcc
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSAS 125 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS 125 (138)
|+.|.+++..=-.=|.+|+.....|---=+-+|+||+|-.+.+
T Consensus 8 IlrLKeSI~~TNeAV~EVt~glsqlaVAIqaIQD~IN~~l~~~ 50 (89)
T 1wp7_A 8 INKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYGGSGGSGG 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 4555566665555566666666555555556666666654433
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.97 E-value=94 Score=21.45 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 93 LSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 93 L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
+..|+.....||..|+.+-+.|..=+..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444433
No 82
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=38.69 E-value=81 Score=21.78 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+|-.|++.+..=..-++....|.-.|-=||-+||+-..+|
T Consensus 32 ~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 32 QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 45566666666656666677777777788899998877665
No 83
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=38.46 E-value=96 Score=21.41 Aligned_cols=48 Identities=29% Similarity=0.404 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 71 DEQEEKARLISQV----LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 71 ~~~eeKe~Li~ei----l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
..+.+|.++++|. -..+.++++|=.++...|+++..+..+ |.+-...|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~EL 74 (77)
T 3mtu_E 23 LAQSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLEL 74 (77)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHh
Confidence 6677888888876 456778888888777777777776655 54444444
No 84
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=38.43 E-value=60 Score=22.00 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 93 LSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 93 L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+-.||.....||..|+.+-+.|..=+.-|
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777766666666655544
No 85
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.22 E-value=1.1e+02 Score=21.80 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
-.||..+..|..+++.+..-...|-.+|+.||.+....
T Consensus 21 ~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~~~ 58 (125)
T 1joc_A 21 EKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQA 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 33444444444444444434444556778887665544
No 86
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=37.65 E-value=1.6e+02 Score=23.75 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
..+.+|.++++| |+..+...+..-.....-|++|.+||--|..=+++|-
T Consensus 23 ~~~~~~~~~~~~---~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 23 LAQSERTEALQQ---LRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp CCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 667777777765 4556666777777788888889999988888888873
No 87
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=37.31 E-value=7.1 Score=28.23 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQV 113 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~ 113 (138)
.+.+|.+.||..+..|..-+...+.|+++|+.=++.
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKt 75 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKN 75 (95)
T ss_dssp ------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999999875543
No 88
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=37.24 E-value=92 Score=21.04 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRL 107 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL 107 (138)
+....++..+|..|..|-..|+.++..|..+
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAI 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777776666653
No 89
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=36.95 E-value=85 Score=21.64 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDS 99 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~ 99 (138)
.++.+|++=++.|+-||=+
T Consensus 35 ~~v~eLEdYID~LLvRVME 53 (75)
T 3tso_C 35 THIRELEDYIDNLLVRVME 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999854
No 90
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.03 E-value=64 Score=26.51 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453 78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~ 116 (138)
.|.+++..|+.-..-|..-..+.+.|..+|+.|++-|++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466666666666666666666666666666666666653
No 91
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=35.59 E-value=59 Score=21.38 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 93 LSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 93 L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
|++-|.+.|.+...|++||+-|.+-
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~ 32 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKS 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554443
No 92
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.30 E-value=82 Score=19.65 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
.|-.+|+....++..|.++-..|+.=+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 93
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.94 E-value=86 Score=19.82 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 97 VDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 97 Vd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.+...+++.|+.+|.-|..-|..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555554444444
No 94
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.86 E-value=78 Score=21.36 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq 115 (138)
-...=..-+.-|..||.....+...++..+.++..|..+-+.|+
T Consensus 43 K~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555788999999999999999999999999998877664
No 95
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=34.78 E-value=1.2e+02 Score=28.97 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhH
Q psy5453 90 LDDLSQRVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 90 L~~L~~RVd~VKeE~~KL~sENq~L 114 (138)
+..|-.++++.++++.++..|++-|
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333333
No 96
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.43 E-value=1.1e+02 Score=21.32 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRS--ENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~s--ENq~Lq~YI~NL 121 (138)
++.|..++..|+.....|-..+...+.+. .+ -++.++.||.-|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L---~~~~~~~~~~~hI~~L 47 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL---KNRDAKQTVQKHIDLL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHH
Confidence 45666777777776666655554443321 11 145566666554
No 97
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=34.33 E-value=91 Score=21.84 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
+.++..|......|+..++.++.|+..+..|=..+.+=
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777776665555443
No 98
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.32 E-value=49 Score=23.14 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRS 109 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~s 109 (138)
.+.|+..+..|-.++...++|.++|++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777777777777777777766654
No 99
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.12 E-value=70 Score=22.74 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENL 105 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~ 105 (138)
||.+|++..+..+..+..|-.++.+.+...+
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4445555555555544444444444444443
No 100
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=33.56 E-value=37 Score=28.66 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 82 QVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 82 eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
++..|.=.+..|-.+.++++++.++|.++|.-+++||..|
T Consensus 263 ~llgl~ip~~~L~e~Ae~ie~~i~el~~~~~e~~~~V~~L 302 (351)
T 2wam_A 263 KTGSLQLPLAVLAEAAAEVQAKIDEQVQASAEVAQVVAAL 302 (351)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3334444568899999999999999999999999999887
No 101
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=33.43 E-value=46 Score=20.27 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhhHhHHH
Q psy5453 96 RVDSVKEENLRLRSENQVLGQ 116 (138)
Q Consensus 96 RVd~VKeE~~KL~sENq~Lq~ 116 (138)
-|+.-.+|..+|++||.-|++
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHh
Confidence 345556778888888888764
No 102
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.30 E-value=1.2e+02 Score=21.14 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSE 110 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sE 110 (138)
..|-.+...|+..+..|-.....++.|.+.+++.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 103
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.17 E-value=1.3e+02 Score=21.71 Aligned_cols=28 Identities=7% Similarity=0.112 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 96 RVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 96 RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
-.++.+....+...||++|..=.+.|..
T Consensus 55 eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 55 DLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556678888888877744
No 104
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.07 E-value=95 Score=19.73 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRLRSE 110 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL~sE 110 (138)
+..|-..++.|..+|+.++.+...|+++
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655554
No 105
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=33.05 E-value=1.2e+02 Score=20.87 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 82 QVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 82 eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
+..-|=.+|++ +....-+-+.||+.+++.+|.-|..|-
T Consensus 21 rLnvlvgslR~---KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 21 ELKKIAETLRS---KLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33333444443 566667788999999999999999884
No 106
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.84 E-value=76 Score=18.92 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 95 QRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
.+..+-+.+.+.|+..|-.|.+=|.-
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 35556667777777777777766643
No 107
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.74 E-value=96 Score=28.34 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 70 PDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
..+...|..|.++-+. |.+||.++|.+.+.+.+.+.--.+|+.++|
T Consensus 46 PSGCrLQglLdkqErD-------ltkrINELKnqLEdlsKnsKdseqy~k~~~ 91 (562)
T 3ghg_A 46 PSGCRMKGLIDEVNQD-------FTNRINKLKNSLFEYQKNNKDSHSLTTNIM 91 (562)
T ss_dssp ECHHHHHHHHHHHHHH-------HHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhhHHhhcCc-------HHHHHHHHHHHHHHHHhhchhHHHHHHHHH
No 108
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=32.67 E-value=1.3e+02 Score=21.28 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.|..|-.++..|+.-|...-.+......+..||+.+..-|..=|+.+
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666554
No 109
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.61 E-value=1.1e+02 Score=20.56 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSE 110 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sE 110 (138)
..|...+..|=++++.-+.+-+.++.|
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 110
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.32 E-value=1.2e+02 Score=28.83 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=11.5
Q ss_pred HHHHHHhhhhHhHHHHHHHHh
Q psy5453 102 EENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 102 eE~~KL~sENq~Lq~YI~NLM 122 (138)
+....|++||+.|.+=++.|.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666555553
No 111
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.12 E-value=1.1e+02 Score=20.19 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
+++..|.+-=.-|..+|...+.-|-+.++|++-|-..+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555688999999999999999999886543
No 112
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.03 E-value=1.3e+02 Score=20.85 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 82 QVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 82 eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
++.+|+.--..|.+.+.+.+...+.|..||+-|++=
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555555555444455555555543
No 113
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.02 E-value=1.2e+02 Score=20.72 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5453 85 ELQNTLDDLSQRVDSVKEENLRLRSE 110 (138)
Q Consensus 85 ~LQ~sL~~L~~RVd~VKeE~~KL~sE 110 (138)
.|...+..|=++++.-+.+-+.++.|
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 114
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.91 E-value=1.7e+02 Score=24.43 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
|+.++..|+..|...-.+|...+...+.+++.=+.|++-|..|+.
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443444444444443
No 115
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=31.71 E-value=1.1e+02 Score=22.21 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHhHHHH
Q psy5453 70 PDEQEEKARLISQVLELQNTLDDLSQ-RVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~~L~~-RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
...+..|-.||++|++--..++.|++ |.++.............+..-|
T Consensus 71 ~~~r~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li~~~~rq~~l~~aY 119 (126)
T 3h3m_A 71 EAARGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKRQQSLLATY 119 (126)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH
Confidence 46788888999999998888887764 6666666666555555555444
No 116
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=31.10 E-value=39 Score=24.13 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
|..++..+.+-=..|+.-..+..+...+..+|+.+|+.|..-|.-|
T Consensus 65 Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 65 KGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333344444455555566777888888888877766
No 117
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=31.01 E-value=55 Score=25.26 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=15.5
Q ss_pred hHhHHHHHHHH---hhcccccccCCC
Q psy5453 111 NQVLGQYIENL---MSASSVFQSTSP 133 (138)
Q Consensus 111 Nq~Lq~YI~NL---MssS~vfqst~~ 133 (138)
+.-|+.||+.| |+..-.++.+++
T Consensus 288 ~~~l~~yv~~l~~~~~G~~~Ws~~t~ 313 (320)
T 3bny_A 288 TPGLAAYVEGLEYQMSGNELWSQTTL 313 (320)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHHhhhhHHHhccCC
Confidence 67899999888 555555544443
No 118
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=30.63 E-value=45 Score=23.48 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5453 79 LISQVLELQNTLDDLSQRVDS 99 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~ 99 (138)
|..||+.||.++..|-+.|--
T Consensus 39 LF~qILtlQqSikqLk~Qvn~ 59 (83)
T 1vf6_A 39 LFNQILTLQQSIKQLKGQLNH 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 557889999998888776643
No 119
>1jy2_O Fibrinogen beta chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_O
Probab=30.08 E-value=60 Score=21.34 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSV 100 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~V 100 (138)
.+.+-|+.|++|-...+-++..|-++|+.+
T Consensus 25 TGCeLq~tLlKQEr~Vk~si~~Lk~~v~~~ 54 (56)
T 1jy2_O 25 TGCKLQDTLVRQERPIRKSIEDLRNTVDSV 54 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHhhcchhhhHHHHHHHHHHh
Confidence 578999999999999999999999999864
No 120
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=29.85 E-value=1.6e+02 Score=22.95 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
+.+..||.+++.|=..+..-|+++..+..+ |.+++..|.
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~e---LDqTl~eL~ 173 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQM---LDQTLLELN 173 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 344567777777777777777777777655 666666653
No 121
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=29.50 E-value=57 Score=23.79 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=25.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 67 DVSPDEQEEKARLISQVLELQNTLDDLSQR 96 (138)
Q Consensus 67 e~~~~~~eeKe~Li~eil~LQ~sL~~L~~R 96 (138)
+.+--..+.|++++.+...+++.|++|+..
T Consensus 50 DS~~Tr~e~RerIv~eCnavRqaLQdLlse 79 (111)
T 4ehp_B 50 DSSCTRDDRRERIVAECNAVRQALQDLLSE 79 (111)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567789999999999999999999875
No 122
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.23 E-value=2e+02 Score=22.40 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
-.+|-+++..+...+..|-.++...+.|++.++...+.++..
T Consensus 44 E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 44 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666665555444443
No 123
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.09 E-value=1.5e+02 Score=20.87 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
.+|.+|.-++..+|..++++-.|-++-...+..++++-..|.+-+++.
T Consensus 34 ~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 34 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH
Confidence 467778888888888888888777766555666666656666666554
No 124
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=29.08 E-value=68 Score=27.40 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=18.2
Q ss_pred hhhhHhHHHHHHHHhhc----ccccccC
Q psy5453 108 RSENQVLGQYIENLMSA----SSVFQST 131 (138)
Q Consensus 108 ~sENq~Lq~YI~NLMss----S~vfqst 131 (138)
-++|+||+=||.|||+. .++|-..
T Consensus 67 ~~~~~yl~i~l~nl~~K~kq~~~Lf~~~ 94 (323)
T 3op0_A 67 GGSGDFLLIYLANLEAKSRQVAALLPPR 94 (323)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred CccccHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34799999999999985 4566433
No 125
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=28.88 E-value=79 Score=25.74 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=13.8
Q ss_pred hhHhHHHHHHHH---hhcccccc
Q psy5453 110 ENQVLGQYIENL---MSASSVFQ 129 (138)
Q Consensus 110 ENq~Lq~YI~NL---MssS~vfq 129 (138)
-+.-|+.||++| |+..-.++
T Consensus 332 ~~~~v~~yv~~l~~~~~Gn~~Ws 354 (382)
T 3kb9_A 332 LSGAVRANVGNMRNWFSSVYWFH 354 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhc
Confidence 378899999988 55444443
No 126
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.79 E-value=9.3 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhHhHH
Q psy5453 95 QRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 95 ~RVd~VKeE~~KL~sENq~Lq 115 (138)
.++...+.|+..|+.||.+|.
T Consensus 66 ~ei~~L~~e~~~L~~e~~~Lk 86 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRHPA 86 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777764
No 127
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.62 E-value=2e+02 Score=22.03 Aligned_cols=15 Identities=0% Similarity=0.011 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCC
Q psy5453 46 DSISSSFTNSSSSPG 60 (138)
Q Consensus 46 ds~~s~f~~~a~SP~ 60 (138)
|.+-+-|..=...|.
T Consensus 38 d~~E~~~~~l~~e~~ 52 (152)
T 3a7p_A 38 NDKEAHLNELFQDNS 52 (152)
T ss_dssp ---------------
T ss_pred hhHHHHHHHHHHhhc
Confidence 445555555455553
No 128
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=28.47 E-value=1.6e+02 Score=21.00 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHhHHHH
Q psy5453 69 SPDEQEEKARLISQVLELQNTLDDLSQ-RVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 69 ~~~~~eeKe~Li~eil~LQ~sL~~L~~-RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
+...++.+-.||++|++--..+..|++ |.++..........+-....-|
T Consensus 57 ~~~~~~~~~~lL~~IL~nDaeIr~Ll~~rl~~L~~li~~~~rq~~l~~aY 106 (122)
T 3a7m_A 57 TRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTRQKSLNNAY 106 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356788899999999999888887764 7888888887777777777767
No 129
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.34 E-value=1.2e+02 Score=22.63 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy5453 83 VLELQNTLDDLSQR----VDSVKEENLRL 107 (138)
Q Consensus 83 il~LQ~sL~~L~~R----Vd~VKeE~~KL 107 (138)
+..|+.+|.....+ |.+.+.|+..|
T Consensus 55 V~tL~~SL~~ekaq~q~~vqeLqgEI~~L 83 (121)
T 3mq7_A 55 VMALMASLDAEKAQGQKKVEELEGEITTL 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777776655 44444444443
No 130
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.51 E-value=68 Score=20.28 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhhh
Q psy5453 96 RVDSVKEENLRLRSEN 111 (138)
Q Consensus 96 RVd~VKeE~~KL~sEN 111 (138)
.|-....|++-|+..|
T Consensus 11 evaslenenetlkkkn 26 (49)
T 3he5_A 11 EVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHhc
Confidence 3444444444444444
No 131
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.44 E-value=1.3e+02 Score=20.22 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHhH
Q psy5453 93 LSQRVDSVKEENLRLRSENQVL 114 (138)
Q Consensus 93 L~~RVd~VKeE~~KL~sENq~L 114 (138)
.++.|++++.+..+|+..-+-|
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l 31 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEV 31 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333
No 132
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.09 E-value=1.8e+02 Score=21.01 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
.+|..|.=||..|.+.|..+-.-.-.++.|+.-..++-+.+..=+.-
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~ 69 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSI 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888877776666666655555554444443333
No 133
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.31 E-value=1.7e+02 Score=21.12 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5453 79 LISQVLELQNTLDDLSQRVDSVKEENLRLRSEN 111 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sEN 111 (138)
|.++....+..+..|...+.+.+..++-|+.|-
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555543
No 134
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.92 E-value=1.8e+02 Score=20.71 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.+..|-.+...+.++...|+.--+.|..+|..+
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777777777777777655
No 135
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.85 E-value=1.9e+02 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQ 112 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq 112 (138)
+.|..|...|.+.|+..-++|..++++...|++.-.
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 446677777777888888888888777666665543
No 136
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.85 E-value=39 Score=24.18 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHH
Q psy5453 92 DLSQRVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 92 ~L~~RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
.|..||+..++|+..|+.+.+-|+.-
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666665543
No 137
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=24.78 E-value=39 Score=24.84 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453 97 VDSVKEENLRLRSENQVLGQYIEN 120 (138)
Q Consensus 97 Vd~VKeE~~KL~sENq~Lq~YI~N 120 (138)
+++.-.+..||+-||+.|..-|.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677778888888888877654
No 138
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.64 E-value=2e+02 Score=21.87 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHhHH
Q psy5453 79 LISQVLELQNTLDDLS-------QRVDSVKEENLRLRSENQVLG 115 (138)
Q Consensus 79 Li~eil~LQ~sL~~L~-------~RVd~VKeE~~KL~sENq~Lq 115 (138)
|.+++.+.+..|++|+ .+|.++-+|..+|+.+=....
T Consensus 90 Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777776 467777777776666544433
No 139
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.60 E-value=58 Score=23.66 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 99 SVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 99 ~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
++.+|..+.-.|.+.|-.-|+++..
T Consensus 103 ~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 103 EVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555555543
No 140
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=24.52 E-value=64 Score=27.67 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=15.0
Q ss_pred HhhhhHhHHHHHHHHhh
Q psy5453 107 LRSENQVLGQYIENLMS 123 (138)
Q Consensus 107 L~sENq~Lq~YI~NLMs 123 (138)
.-++|+||+-||.|||+
T Consensus 62 ~~~~~~~~~~~~~~~~~ 78 (389)
T 2y1n_A 62 TLGENEYFRVFMENLMK 78 (389)
T ss_dssp HHHHCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 34899999999999995
No 141
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=24.44 E-value=1.5e+02 Score=21.28 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHhHHHH
Q psy5453 70 PDEQEEKARLISQVLELQNTLDDLSQ-RVDSVKEENLRLRSENQVLGQY 117 (138)
Q Consensus 70 ~~~~eeKe~Li~eil~LQ~sL~~L~~-RVd~VKeE~~KL~sENq~Lq~Y 117 (138)
...++.+-.||++|++--..++.|++ |.++.............+...|
T Consensus 61 ~~~~~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~li~~~~rq~~l~~aY 109 (123)
T 3nkz_A 61 LMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNNTY 109 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45677777888888887777776654 6676666666666666655555
No 142
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.00 E-value=1.5e+02 Score=18.99 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HhHHHHHHHH
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSEN-------QVLGQYIENL 121 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sEN-------q~Lq~YI~NL 121 (138)
.+...=+.++++.+.|+..|..--.+|+.|.+...+|-..+ ..++.-+.+|
T Consensus 33 ~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l 90 (118)
T 3uul_A 33 DDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLL 90 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 34555667888999999999999999999999999986543 2466666665
No 143
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.73 E-value=1.9e+02 Score=20.27 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
+...=+.|+++-..++..|..--.+|..+.....+|-..+.+-...|.
T Consensus 137 ~~~~v~~ll~~h~~~~~el~~~~~~i~~l~~~~~~L~~~~~~~~~~I~ 184 (213)
T 1cun_A 137 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENIT 184 (213)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 444556789999999999999999999999999999887766444443
No 144
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=23.70 E-value=64 Score=22.11 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
++.|.++...++.+++.|..=..+-..-+.+|...|++|.+=|.-|=+
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 445777777777777777777777777788888888888888877644
No 145
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.51 E-value=1.3e+02 Score=23.34 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 89 TLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 89 sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.|..+..++.++++....|..=-+-++.|+.++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~ 150 (232)
T 2qlz_A 117 TLKEMITDFIKANKELEKVLEAFKTIESYRSSLM 150 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666666666
No 146
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=23.51 E-value=94 Score=22.55 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
.=+.|+++-..++..|...-.||..+....++|-..+.+-..-|.
T Consensus 153 ~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~~~h~~~~~I~ 197 (218)
T 3fb2_A 153 SVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDIS 197 (218)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 335689999999999999999999999999999988776444443
No 147
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.43 E-value=1.3e+02 Score=19.49 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhh
Q psy5453 96 RVDSVKEENLRLRSEN 111 (138)
Q Consensus 96 RVd~VKeE~~KL~sEN 111 (138)
++...+++.+.|+.+|
T Consensus 65 ~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 65 KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3444444455555444
No 148
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.30 E-value=56 Score=24.46 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 91 DDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 91 ~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
..|-..-.++.+|..+.-.|.+.|..-|+++..
T Consensus 95 ~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 95 DMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555666777777777754
No 149
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.19 E-value=1.5e+02 Score=20.25 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy5453 84 LELQNTLDDLSQRVDSVKEENLRLRSENQ 112 (138)
Q Consensus 84 l~LQ~sL~~L~~RVd~VKeE~~KL~sENq 112 (138)
+.|-+-|-.-++||.....+|..|+.+=+
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444433
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.04 E-value=3.3e+02 Score=22.76 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
-.++-+.|.++..+|+..+..+-.++.++++...+.+..-+-|---|..|-
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555566666777777777766666666555555555555544444443
No 151
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.99 E-value=2.1e+02 Score=20.42 Aligned_cols=13 Identities=0% Similarity=0.342 Sum_probs=7.9
Q ss_pred hHhHHHHHHHHhh
Q psy5453 111 NQVLGQYIENLMS 123 (138)
Q Consensus 111 Nq~Lq~YI~NLMs 123 (138)
...++.-|.++|.
T Consensus 121 ~~~~~~Li~~~~~ 133 (146)
T 3hh0_A 121 VALFSSFLQTFIW 133 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3446666766664
No 152
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.94 E-value=3.1e+02 Score=22.38 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453 88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIE 119 (138)
Q Consensus 88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~ 119 (138)
......-.+++..++|+++++.+.+-+..=|.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 44555666777888888888888777665554
No 153
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.88 E-value=1.8e+02 Score=19.48 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453 80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA 124 (138)
Q Consensus 80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss 124 (138)
+++-+++...|-+-=.||...=+.+..|..|=+.||.-|..|++-
T Consensus 12 ~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 566777777777777788888888888888888888888888763
No 154
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.66 E-value=1.5e+02 Score=21.40 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy5453 72 EQEEKARLISQVLELQNTLDD 92 (138)
Q Consensus 72 ~~eeKe~Li~eil~LQ~sL~~ 92 (138)
+.-.|+.|++|-.+|..+|..
T Consensus 16 EK~S~eeL~kQk~eL~~~l~~ 36 (101)
T 1d7m_A 16 EKVSREQLIKQKDQLNSLLAS 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHH
Confidence 345788889888888887773
No 155
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.65 E-value=1.6e+02 Score=18.77 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------hHHHHHHHHh
Q psy5453 71 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQ-------VLGQYIENLM 122 (138)
Q Consensus 71 ~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq-------~Lq~YI~NLM 122 (138)
.+.+.=+.++++.+.|+..|..--.+|+.|.....+|-..+. .++.-+..|.
T Consensus 33 ~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~ 91 (119)
T 3uun_A 33 NDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLN 91 (119)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 345556678888999999999999999999999988865432 4666666653
No 156
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.58 E-value=1.7e+02 Score=19.33 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5453 75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSE 110 (138)
Q Consensus 75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sE 110 (138)
.=.+-+.-|..||+.-..|...++..+.+++.|...
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446778888888888888888888888888654
No 157
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.94 E-value=2.7e+02 Score=21.68 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 83 VLELQNTLDDLSQRVDSVKEENLRL 107 (138)
Q Consensus 83 il~LQ~sL~~L~~RVd~VKeE~~KL 107 (138)
+..||..+..|..+++..+.+..+|
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l 158 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDV 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 158
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=21.85 E-value=1.5e+02 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=13.1
Q ss_pred hHhHHHHHHHH---hhcccccc
Q psy5453 111 NQVLGQYIENL---MSASSVFQ 129 (138)
Q Consensus 111 Nq~Lq~YI~NL---MssS~vfq 129 (138)
+.-|+.||+.| |+..-.++
T Consensus 275 ~~~l~~yv~~l~~~~~Gn~~Ws 296 (300)
T 1di1_A 275 SEAAKAYMKGLEYQMSGNEQWS 296 (300)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHh
Confidence 67899999988 44444443
No 159
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.85 E-value=2e+02 Score=19.83 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453 77 ARLISQVLELQ---NTL----DDLSQRVDSVKEENLRLRSENQVLGQYIENL 121 (138)
Q Consensus 77 e~Li~eil~LQ---~sL----~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL 121 (138)
+.||+|-.+|- +.| ++|+.|||+.-.|.+-|+.|+.-+++-..-|
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45665544443 333 5789999999999999999999888876654
No 160
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=21.77 E-value=1.6e+02 Score=18.56 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSV 100 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~V 100 (138)
......+..|...|.++..|++.+
T Consensus 19 ~~v~~~l~~Lt~kL~~vt~rle~l 42 (47)
T 1aq5_A 19 TKVEELINTLQQKLEAVAKRIEAL 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666655
No 161
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.50 E-value=52 Score=26.00 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5453 77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRS 109 (138)
Q Consensus 77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~s 109 (138)
++|.+|...|+..+. +.++.+.|+++|+.
T Consensus 29 ~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 29 QHLKERLEELAQLES----EVADLKKENKDLKE 57 (255)
T ss_dssp TTHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 345555544443332 33444444444443
No 162
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.32 E-value=99 Score=17.93 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=14.8
Q ss_pred HHHHhhhhHhHHHHHHHHhh
Q psy5453 104 NLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 104 ~~KL~sENq~Lq~YI~NLMs 123 (138)
...|+.||+.|..-++.|++
T Consensus 8 lasleaenkqlkakveella 27 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888877765
No 163
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=21.22 E-value=2e+02 Score=22.24 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=16.2
Q ss_pred hHhHHHH-HHHH---hhcccccccCCCC
Q psy5453 111 NQVLGQY-IENL---MSASSVFQSTSPK 134 (138)
Q Consensus 111 Nq~Lq~Y-I~NL---MssS~vfqst~~~ 134 (138)
+.-|..| |+.| |+..-.++.++++
T Consensus 287 ~~~v~~y~v~~l~~~~~G~~~W~~~s~R 314 (337)
T 1ps1_A 287 REALERYRTDAVRTVIRGSYDWHRSSGR 314 (337)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTCC-
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 7788899 7766 7766666555543
No 164
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.90 E-value=2.2e+02 Score=19.82 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453 81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122 (138)
Q Consensus 81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM 122 (138)
.++..|+..| .+.++.-+++.+.|+.+=.-++..|.+|-
T Consensus 40 EqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 40 EQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455444 45677777777888777777888888773
No 165
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.63 E-value=2.8e+02 Score=23.84 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=35.8
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453 72 EQEEKA-RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123 (138)
Q Consensus 72 ~~eeKe-~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs 123 (138)
.+..+- +|+.++..|+..+...-..|..++.....+.+.=+.|++-|..|+.
T Consensus 81 ~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 81 QLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334343 5777787887777766667777776666666666777777888876
No 166
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.05 E-value=3e+02 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Q psy5453 76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYI 118 (138)
Q Consensus 76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI 118 (138)
++.|.+....|+.-...|-.....+...++.|+.+..-+++|+
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666665
Done!