RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5453
         (138 letters)



>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 26.6 bits (58), Expect = 1.00
 Identities = 7/43 (16%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 65  DPDVSPDEQEEKARL---ISQVLELQNTLDDLSQRVDSVKEEN 104
            PD++P++ +        I ++  + N + +  + ++ ++EE 
Sbjct: 14  RPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEG 56


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 24.5 bits (53), Expect = 2.9
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 68  VSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
           +   E  EKA  +  + +    +  +      +  E   LR   + L   +E L  
Sbjct: 32  IPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87


>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
           {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 269

 Score = 24.6 bits (53), Expect = 4.3
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 69  SPDEQEEKARL--ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL 121
           SP        L  I+   +L   L  L +  + V  + +    E+  + + +  L
Sbjct: 203 SPYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGAL 257


>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 65

 Score = 23.0 bits (50), Expect = 5.9
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 89  TLDDLSQRVDSVKEENLRLRSENQVLGQ 116
           T  +    +D +K E L  R+     G 
Sbjct: 12  TPAEREAELDDLKTELLNARAVQAAGGA 39


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 69  SPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVF 128
            P        +I+    L   ++++ Q VD   E+ +R   E +   ++ + L  A+   
Sbjct: 588 VPTAMGRLETIITNREALHTVVNNVRQVVDREVEQLMRNLVEGRN-FKFRDGLGEANHAM 646

Query: 129 Q 129
            
Sbjct: 647 S 647


>d2hqva1 e.62.1.2 (A:11-186) Hypothetical protein AGR_C_4470p
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 176

 Score = 24.0 bits (52), Expect = 7.4
 Identities = 6/28 (21%), Positives = 8/28 (28%)

Query: 84  LELQNTLDDLSQRVDSVKEENLRLRSEN 111
           +  Q   DD   R  +   E      E 
Sbjct: 6   IAAQKNDDDRQARALAALAEKPDGIVEA 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.303    0.122    0.315 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,206
Number of extensions: 16505
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 17
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 48 (22.7 bits)