BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5454
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WLN|A Chain A, Solution Structure Of The Fha Domain Of Mouse Afadin 6
Length = 120
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Query: 25 PKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETF 84
PK +RL +VTEVG+++ S+QLFGP IQP HC + + +G+VTVTP S +AET+
Sbjct: 28 PKLYRLQLSVTEVGTEKF----DDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETY 83
Query: 85 VNGQRIFETTILQ 97
V+GQRI ETT+LQ
Sbjct: 84 VDGQRISETTMLQ 96
>pdb|4EGX|A Chain A, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|B Chain B, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|C Chain C, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|D Chain D, Crystal Structure Of Kif1a Cc1-Fha Tandem
Length = 184
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 34 VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVI-----AHTEGIVTVTPCSREAETFVNGQ 88
+T VG + + Q + L G I+ HCV +E +VT+ PC A+T+VNG+
Sbjct: 92 ITRVGREDGE---RRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEG-ADTYVNGK 147
Query: 89 RIFETTILQ 97
++ E +IL+
Sbjct: 148 KVTEPSILR 156
>pdb|4EJQ|A Chain A, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|B Chain B, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|C Chain C, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|D Chain D, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|E Chain E, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|F Chain F, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|G Chain G, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|H Chain H, Crystal Structure Of Kif1a C-Cc1-Fha
Length = 154
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 34 VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVI-----AHTEGIVTVTPCSREAETFVNGQ 88
+T VG + + Q + L G I+ HCV +E +VT+ PC A+T+VNG+
Sbjct: 62 ITRVGREDGE---RRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCE-GADTYVNGK 117
Query: 89 RIFETTILQ 97
++ E +IL+
Sbjct: 118 KVTEPSILR 126
>pdb|3FM8|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|B Chain B, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|A Chain A, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|B Chain B, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 124
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 48 SQSLQLFGPNIQPRHCVIAHT-EGIVTVTPCSREAETFVNGQRI 90
SQ +QL G I P HC+I T EG V +TP + TFVNG +
Sbjct: 57 SQDIQLCGMGILPEHCIIDITSEGQVMLTP-QKNTRTFVNGSSV 99
>pdb|2G1L|A Chain A, Crystal Structure Of The Fha Domain Of Human Kinesin
Family Member C
Length = 104
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 39 SDRASPYGQ-SQSLQLFGPNIQPRHCVIAHT-----EGIVTVTPCSREAETFVNGQRIFE 92
D + GQ ++L G I+ +HC+ E +VT+ PC AET+VNG+ + E
Sbjct: 24 KDGVTRVGQVDMDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEG-AETYVNGKLVTE 82
Query: 93 TTILQ 97
+L+
Sbjct: 83 PLVLK 87
>pdb|3FZY|A Chain A, Crystal Structure Of Pre-Cleavage Form Of Cysteine
Protease Domain From Vibrio Cholerae Rtxa Toxin
pdb|3FZY|B Chain B, Crystal Structure Of Pre-Cleavage Form Of Cysteine
Protease Domain From Vibrio Cholerae Rtxa Toxin
Length = 234
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 62 HCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQVVVAASA-VAEKQQQSDNLKEIDN 120
H ++ G +TVTP + ET +GQ I + VV A+A +A K +S + ++D+
Sbjct: 32 HNQNVNSWGPITVTPTTDGGETRFDGQIIVQMENDPVVAKAAANLAGKHAESSVVVQLDS 91
Query: 121 DTTILMI 127
D ++
Sbjct: 92 DGNYRVV 98
>pdb|3EEB|A Chain A, Structure Of The V. Cholerae Rtx Cysteine Protease Domain
pdb|3EEB|B Chain B, Structure Of The V. Cholerae Rtx Cysteine Protease Domain
pdb|3GCD|A Chain A, Structure Of The V. Cholerae Rtx Cysteine Protease Domain
In Complex With An Aza-Leucine Peptide Inhibitor
pdb|3GCD|B Chain B, Structure Of The V. Cholerae Rtx Cysteine Protease Domain
In Complex With An Aza-Leucine Peptide Inhibitor
pdb|3GCD|C Chain C, Structure Of The V. Cholerae Rtx Cysteine Protease Domain
In Complex With An Aza-Leucine Peptide Inhibitor
pdb|3GCD|D Chain D, Structure Of The V. Cholerae Rtx Cysteine Protease Domain
In Complex With An Aza-Leucine Peptide Inhibitor
Length = 209
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 67 HTEGIVTVTPCSREAETFVNGQRIFETTILQVVVAASA-VAEKQQQSDNLKEIDNDTTIL 125
++ G +TVTP + ET +GQ I + VV A+A +A K +S + ++D+D
Sbjct: 12 NSWGPITVTPTTDGGETRFDGQIIVQMENDPVVAKAAANLAGKHAESSVVVQLDSDGNYR 71
Query: 126 MI 127
++
Sbjct: 72 VV 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,187,291
Number of Sequences: 62578
Number of extensions: 110742
Number of successful extensions: 148
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 8
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)