BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5454
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1
Length = 1829
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 15 YNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTV 74
Y + PK +RL +VTEVG+++ S+QLFGP IQP HC + + +G+VTV
Sbjct: 406 YEDGSDSRDKPKLYRLQLSVTEVGTEKFD----DNSIQLFGPGIQPHHCDLTNMDGVVTV 461
Query: 75 TPCSREAETFVNGQRIFETTILQ 97
TP S +AET+V+GQRI ETT+LQ
Sbjct: 462 TPRSMDAETYVDGQRISETTMLQ 484
>sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=3
Length = 1824
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%)
Query: 14 NYNGSEITSGS---PKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEG 70
NY+ E S S PK +RL +VTEVG+++ S+QLFGP IQP HC + + +G
Sbjct: 402 NYHTYEDGSDSRDKPKLYRLQLSVTEVGTEKLD----DNSIQLFGPGIQPHHCDLTNMDG 457
Query: 71 IVTVTPCSREAETFVNGQRIFETTILQ 97
+VTVTP S +AET+V GQRI ETT+LQ
Sbjct: 458 VVTVTPRSMDAETYVEGQRISETTMLQ 484
>sp|Q9QZQ1|AFAD_MOUSE Afadin OS=Mus musculus GN=Mllt4 PE=1 SV=3
Length = 1820
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 15 YNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTV 74
Y + PK +RL +VTEVG+++ S+QLFGP IQP HC + + +G+VTV
Sbjct: 406 YEDGSDSRDKPKLYRLQLSVTEVGTEKFD----DNSIQLFGPGIQPHHCDLTNMDGVVTV 461
Query: 75 TPCSREAETFVNGQRIFETTILQ 97
TP S +AET+V+GQRI ETT+LQ
Sbjct: 462 TPRSMDAETYVDGQRISETTMLQ 484
>sp|Q7PHR1|KIF1A_ANOGA Kinesin-like protein unc-104 OS=Anopheles gambiae GN=unc-104 PE=3
SV=3
Length = 1644
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 QSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQ 97
Q +QL G +I HCV + +G+VT+ P ++A +VNG+++ E +LQ
Sbjct: 508 QDIQLSGSHILKEHCVFENKDGVVTLVP-HKDALVYVNGRKVIEPEVLQ 555
>sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapiens GN=KIF13A PE=1 SV=2
Length = 1805
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 35 TEVGSDRASPYGQSQSLQLFGPNIQPRHCVIA-HTEGIVTVTPCSREAETFVNGQRIFET 93
T VG+D SQ +QLFG IQP+HC I ++G VT+TP A + VNG + T
Sbjct: 470 TRVGAD------TSQDIQLFGIGIQPQHCEIDIASDGDVTLTP-KENARSCVNGTLVCST 522
Query: 94 TIL 96
T L
Sbjct: 523 TQL 525
>sp|Q17BU3|KIF1A_AEDAE Kinesin-like protein unc-104 OS=Aedes aegypti GN=unc-104 PE=3 SV=1
Length = 1644
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 QSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQ 97
Q +QL G +I HCV + +G+VT+ P ++A ++NG+++ E +LQ
Sbjct: 510 QDIQLSGSHILKEHCVFENKDGVVTLVP-HKDALVYLNGRKLVEPEVLQ 557
>sp|Q15058|KIF14_HUMAN Kinesin-like protein KIF14 OS=Homo sapiens GN=KIF14 PE=1 SV=1
Length = 1648
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 48 SQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQ 97
S +QL G I HC I + G V++ P EA+T+VNG+ I E T+L+
Sbjct: 835 SHDIQLSGVLIADDHCTIKNFGGTVSIIPVG-EAKTYVNGKHILEITVLR 883
>sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculus GN=Kif13a PE=1 SV=1
Length = 1749
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 35 TEVGSDRASPYGQSQSLQLFGPNIQPRHCVIA-HTEGIVTVTPCSREAETFVNGQRIFET 93
T VG+D SQ +QLFG IQP HC I +G +T+TP A + VNG + T
Sbjct: 470 TRVGAD------TSQDIQLFGIGIQPEHCEIDIAADGDITLTP-KENARSCVNGTLVCNT 522
Query: 94 TIL 96
T L
Sbjct: 523 TQL 525
>sp|P33173|KIF1A_MOUSE Kinesin-like protein KIF1A OS=Mus musculus GN=Kif1a PE=1 SV=2
Length = 1695
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 34 VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT-----EGIVTVTPCSREAETFVNGQ 88
VT VG + A + Q + L G I+ HC+ E +VT+ PC A+T+VNG+
Sbjct: 515 VTRVGREDAE---RRQDIVLSGHFIKEEHCIFRSDSRGGGEAVVTLEPCE-GADTYVNGK 570
Query: 89 RIFETTILQ 97
++ E +IL+
Sbjct: 571 KVTEPSILR 579
>sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A OS=Homo sapiens GN=KIF1A PE=1 SV=2
Length = 1690
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 34 VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVI-----AHTEGIVTVTPCSREAETFVNGQ 88
+T VG + + Q + L G I+ HCV +E +VT+ PC A+T+VNG+
Sbjct: 515 ITRVGREDGE---RRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCE-GADTYVNGK 570
Query: 89 RIFETTILQ 97
++ E +IL+
Sbjct: 571 KVTEPSILR 579
>sp|Q60575|KIF1B_MOUSE Kinesin-like protein KIF1B OS=Mus musculus GN=Kif1b PE=1 SV=2
Length = 1816
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 34 VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT-----EGIVTVTPCSREAETFVNGQ 88
+T VG A + Q + L G +I+ HC+ E IVT+ PC R +ET+VNG+
Sbjct: 555 ITRVGQADAE---RRQDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCER-SETYVNGK 610
Query: 89 RI 90
R+
Sbjct: 611 RV 612
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 48 SQSLQLFGPNIQPRHCVIAHT-EGIVTVTPCSREAETFVNGQRI 90
SQ +QL G I P HC+I T EG V +TP + TFVNG +
Sbjct: 478 SQDIQLCGMGILPEHCIIDITSEGQVMLTP-QKNTRTFVNGSSV 520
>sp|Q28WQ1|KIF1A_DROPS Kinesin-like protein unc-104 OS=Drosophila pseudoobscura
pseudoobscura GN=unc-104 PE=3 SV=1
Length = 1671
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 49 QSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQ 97
Q +QL G +I HC + VT+ P ++A FVNG+++ E +L+
Sbjct: 511 QDIQLSGSHILKEHCTFENRNSTVTLLP-HKDAIIFVNGRQLVEPEVLK 558
>sp|A1ZAJ2|KIF1A_DROME Kinesin-like protein unc-104 OS=Drosophila melanogaster GN=unc-104
PE=1 SV=1
Length = 1670
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 49 QSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQ 97
Q +QL G +I HC + VT+ P ++A +VNG+++ E +L+
Sbjct: 510 QDIQLSGSHILKEHCTFENKNSTVTLLP-HKDAIIYVNGRKLVEPEVLK 557
>sp|Q6PDH0|PHLB1_MOUSE Pleckstrin homology-like domain family B member 1 OS=Mus musculus
GN=Phldb1 PE=1 SV=1
Length = 1371
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 48 SQSLQLFGPNIQPRHCVIAHTEGIVTVTPC 77
++ + L GP + P HC I + G +T+ PC
Sbjct: 70 ARDISLQGPGLAPEHCYIENLRGTLTLYPC 99
>sp|Q86UU1|PHLB1_HUMAN Pleckstrin homology-like domain family B member 1 OS=Homo sapiens
GN=PHLDB1 PE=1 SV=1
Length = 1377
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 48 SQSLQLFGPNIQPRHCVIAHTEGIVTVTPC 77
++ + L GP + P HC I + G +T+ PC
Sbjct: 70 ARDISLQGPGLAPEHCYIENLRGTLTLYPC 99
>sp|O43896|KIF1C_HUMAN Kinesin-like protein KIF1C OS=Homo sapiens GN=KIF1C PE=1 SV=3
Length = 1103
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 51 LQLFGPNIQPRHCV---IAHTEG--IVTVTPCSREAETFVNGQRIFETTILQ 97
++L G I+ +HC+ I +G +VT+ PC AET+VNG+ + E +L+
Sbjct: 532 IKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCE-GAETYVNGKLVTEPLVLK 582
>sp|O35787|KIF1C_RAT Kinesin-like protein KIF1C OS=Rattus norvegicus GN=Kif1c PE=1 SV=1
Length = 1097
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 51 LQLFGPNIQPRHCV---IAHTEG--IVTVTPCSREAETFVNGQRIFETTILQ 97
++L G I+ +HC+ I +G +VT+ PC AET+VNG+ + E +L+
Sbjct: 529 IKLTGQFIREQHCLFRSIPQPDGEVMVTLEPCE-GAETYVNGKLVTEPLVLK 579
>sp|O35071|KIF1C_MOUSE Kinesin-like protein KIF1C OS=Mus musculus GN=Kif1c PE=1 SV=2
Length = 1100
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 51 LQLFGPNIQPRHCV---IAHTEG--IVTVTPCSREAETFVNGQRIFETTILQ 97
++L G I+ +HC+ I +G +VT+ PC AET+VNG+ + E +L+
Sbjct: 532 IKLTGQFIREQHCLFRSIPQPDGEVMVTLEPCE-GAETYVNGKLVTEPLVLK 582
>sp|Q9Y5Y9|SCNAA_HUMAN Sodium channel protein type 10 subunit alpha OS=Homo sapiens
GN=SCN10A PE=1 SV=2
Length = 1956
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 12 LKNYNGSEITS--GSPKRHRLHPNVTEVGSD-----RASPYGQSQ 49
L ++NGS +TS S +RHR+ P V+E ++ R+ PY Q +
Sbjct: 442 LHSHNGSPLTSKNASERRHRIKPRVSEGSTEDNKSPRSDPYNQRR 486
>sp|Q8R2U0|SEH1_MOUSE Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1
Length = 360
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 22 SGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVT 75
S +P R HP + VGSD +SP ++ +Q+F N R A E ++TVT
Sbjct: 169 SWNPSSSRAHPPMIAVGSDDSSPNSMAK-VQIFEYNENTRK--YAKAETLMTVT 219
>sp|Q1LBC2|Y5695_RALME UPF0173 metal-dependent hydrolase Rmet_5695 OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=Rmet_5695 PE=3 SV=1
Length = 291
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 37 VGSDRASPYGQSQSLQLFGPNIQPRHCVIA-HTEGIVTVTPCSREAETFVNGQRI 90
V SD P+G+S ++ FGPN V A H+ +V P + + E+ G+ +
Sbjct: 132 VTSDLVQPFGKSGTVMPFGPNGPKITAVHAEHSSELVWKNPATNKNESHYGGEPV 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,317,994
Number of Sequences: 539616
Number of extensions: 1583731
Number of successful extensions: 2581
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2565
Number of HSP's gapped (non-prelim): 28
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)