Query psy5454
Match_columns 129
No_of_seqs 107 out of 580
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:58:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4egx_A Kinesin-like protein KI 100.0 2.4E-30 8.1E-35 195.2 11.2 99 2-107 63-166 (184)
2 3fm8_A Kinesin-like protein KI 100.0 5.5E-29 1.9E-33 177.4 11.2 96 1-107 20-116 (124)
3 4ejq_A Kinesin-like protein KI 100.0 8.2E-29 2.8E-33 181.8 11.0 98 2-106 33-135 (154)
4 1wln_A Afadin; beta sandwich, 99.9 9.4E-24 3.2E-28 148.5 10.4 100 2-106 6-105 (120)
5 1r21_A Antigen KI-67; beta san 99.7 9.3E-18 3.2E-22 118.7 9.0 91 5-106 10-100 (128)
6 2xt9_B Putative signal transdu 99.7 2.1E-16 7.3E-21 109.9 11.9 89 6-107 10-98 (115)
7 3po8_A RV0020C protein, putati 99.7 1.4E-16 4.7E-21 108.2 9.6 75 26-107 16-90 (100)
8 3gqs_A Adenylate cyclase-like 99.7 4E-16 1.4E-20 107.0 11.5 77 26-107 17-95 (106)
9 2kb3_A Oxoglutarate dehydrogen 99.7 4.9E-16 1.7E-20 112.5 11.1 87 7-106 46-132 (143)
10 2jqj_A DNA damage response pro 99.7 4.4E-16 1.5E-20 113.1 10.2 88 5-106 16-113 (151)
11 1uht_A Expressed protein; FHA 99.7 2.6E-16 9E-21 109.7 8.7 93 6-107 9-104 (118)
12 2kfu_A RV1827 PThr 22; FHA dom 99.7 6.5E-16 2.2E-20 114.2 11.0 74 26-106 68-141 (162)
13 3va4_A Mediator of DNA damage 99.6 1.6E-15 5.6E-20 108.4 9.6 91 6-107 23-119 (132)
14 1lgp_A Cell cycle checkpoint p 99.6 1.5E-15 5.3E-20 105.4 9.1 80 26-112 17-101 (116)
15 4h87_A Kanadaptin; FHA domain 99.6 2E-15 6.8E-20 107.7 9.3 75 27-107 34-122 (130)
16 1mzk_A Kinase associated prote 99.6 4.9E-15 1.7E-19 106.2 11.0 91 5-107 5-112 (139)
17 3hx1_A SLR1951 protein; P74513 99.6 4.6E-15 1.6E-19 105.8 10.7 89 6-107 9-107 (131)
18 3oun_A Putative uncharacterize 99.6 3.1E-15 1.1E-19 110.2 9.5 75 26-107 78-152 (157)
19 1gxc_A CHK2, CDS1, serine/thre 99.6 7E-15 2.4E-19 106.6 9.9 74 27-107 42-131 (149)
20 2pie_A E3 ubiquitin-protein li 99.6 7.9E-15 2.7E-19 105.0 9.9 75 27-107 21-103 (138)
21 1dmz_A Protein (protein kinase 99.6 4.4E-15 1.5E-19 108.9 8.3 72 26-104 18-108 (158)
22 2ff4_A Probable regulatory pro 99.6 9.3E-15 3.2E-19 119.3 10.7 88 6-106 286-373 (388)
23 1qu5_A Protein kinase SPK1; FH 99.6 4.4E-15 1.5E-19 111.4 7.6 86 8-104 28-132 (182)
24 1g3g_A Protien kinase SPK1; FH 99.6 2E-14 6.7E-19 105.9 10.7 76 26-108 46-136 (164)
25 1g6g_A Protein kinase RAD53; b 99.5 1.5E-14 5.3E-19 102.1 8.4 69 34-109 37-109 (127)
26 2jpe_A Nuclear inhibitor of pr 99.5 2.2E-15 7.5E-20 108.1 4.0 89 8-107 35-128 (140)
27 2csw_A Ubiquitin ligase protei 99.5 4.8E-14 1.6E-18 101.8 10.8 75 27-107 29-111 (145)
28 3els_A PRE-mRNA leakage protei 99.5 9.3E-14 3.2E-18 102.1 8.4 85 26-110 48-148 (158)
29 3elv_A PRE-mRNA leakage protei 99.4 3.8E-13 1.3E-17 102.8 8.6 84 26-109 95-194 (205)
30 3huf_A DNA repair and telomere 99.2 8.2E-11 2.8E-15 95.0 9.2 78 26-106 14-104 (325)
31 4a0e_A YSCD, type III secretio 99.1 3.6E-10 1.2E-14 80.1 6.9 74 26-106 17-90 (123)
32 3kt9_A Aprataxin; FHA domain, 99.0 2.8E-09 9.5E-14 73.3 10.0 74 26-108 15-93 (102)
33 3uv0_A Mutator 2, isoform B; F 98.9 1.9E-09 6.5E-14 73.9 6.2 62 30-101 17-81 (102)
34 3i6u_A CDS1, serine/threonine- 98.9 2.3E-09 8E-14 87.0 7.2 78 25-109 20-113 (419)
35 2brf_A Bifunctional polynucleo 98.8 1.7E-08 5.7E-13 70.3 7.8 72 27-107 21-98 (110)
36 1wv3_A Similar to DNA segregat 98.7 1.2E-08 4E-13 79.0 5.1 71 26-106 85-161 (238)
37 1yj5_C 5' polynucleotide kinas 98.6 2.7E-07 9.2E-12 66.7 10.2 70 28-106 22-97 (143)
38 1ujx_A Polynucleotide kinase 3 98.5 6.6E-08 2.3E-12 68.1 3.1 68 31-107 34-105 (119)
39 2q5w_D Molybdopterin convertin 91.8 0.1 3.5E-06 32.4 2.5 25 82-106 48-72 (77)
40 2hj1_A Hypothetical protein; s 91.8 0.051 1.7E-06 36.4 1.0 27 80-106 58-84 (97)
41 3po0_A Small archaeal modifier 90.6 0.16 5.5E-06 32.4 2.6 27 80-106 58-84 (89)
42 2cu3_A Unknown function protei 90.3 0.16 5.5E-06 30.8 2.3 26 81-106 30-59 (64)
43 1fm0_D Molybdopterin convertin 89.4 0.22 7.7E-06 31.0 2.5 26 81-106 51-76 (81)
44 1rws_A Hypothetical protein PF 88.1 0.098 3.4E-06 33.0 0.1 27 80-106 46-72 (77)
45 1f0z_A THis protein; ubiquitin 88.1 0.16 5.5E-06 30.9 1.1 27 80-106 31-61 (66)
46 1vjk_A Molybdopterin convertin 88.1 0.21 7.3E-06 32.7 1.7 27 80-106 67-93 (98)
47 2k6p_A Uncharacterized protein 87.6 0.36 1.2E-05 31.0 2.6 27 81-107 26-52 (92)
48 1ryj_A Unknown; beta/alpha pro 87.5 0.34 1.2E-05 29.9 2.3 26 81-106 40-65 (70)
49 2kl0_A Putative thiamin biosyn 87.0 0.3 1E-05 30.7 1.9 27 80-106 30-60 (73)
50 2k5p_A THis protein, thiamine- 86.8 0.31 1.1E-05 31.0 1.9 27 80-106 34-64 (78)
51 3hvz_A Uncharacterized protein 85.9 0.41 1.4E-05 30.6 2.1 29 82-110 43-71 (78)
52 1tyg_B YJBS; alpha beta barrel 85.9 0.44 1.5E-05 31.0 2.3 27 80-106 52-82 (87)
53 3dwg_C 9.5 kDa culture filtrat 84.7 0.62 2.1E-05 29.9 2.6 26 81-106 59-88 (93)
54 1dm9_A Hypothetical 15.5 KD pr 83.2 0.81 2.8E-05 31.8 2.8 27 80-106 33-59 (133)
55 2l52_A Methanosarcina acetivor 81.9 0.56 1.9E-05 30.8 1.5 26 81-106 65-94 (99)
56 2g1e_A Hypothetical protein TA 81.1 0.82 2.8E-05 28.8 2.1 27 80-106 55-85 (90)
57 3rpf_C Molybdopterin convertin 80.5 0.93 3.2E-05 27.9 2.1 27 80-106 42-69 (74)
58 1v8c_A MOAD related protein; r 77.8 1.4 4.7E-05 31.9 2.6 27 80-106 52-82 (168)
59 2qjl_A URM1, ubiquitin-related 77.5 1.6 5.3E-05 28.5 2.6 26 81-106 65-94 (99)
60 2eki_A DRG 1, developmentally- 75.3 0.72 2.4E-05 30.7 0.4 28 83-110 63-90 (93)
61 2k9x_A Tburm1, uncharacterized 74.4 1 3.5E-05 30.5 1.1 26 81-106 68-97 (110)
62 2kmm_A Guanosine-3',5'-BIS(dip 72.4 2 6.9E-05 25.8 2.0 27 82-108 38-64 (73)
63 1wgk_A Riken cDNA 2900073H19 p 71.5 0.97 3.3E-05 30.7 0.4 26 81-106 74-103 (114)
64 2l32_A Small archaeal modifier 71.1 0.92 3.1E-05 28.5 0.2 26 80-106 36-61 (74)
65 1c05_A Ribosomal protein S4 de 71.0 3.1 0.00011 29.6 3.1 28 80-107 75-103 (159)
66 1p9k_A ORF, hypothetical prote 68.0 1 3.6E-05 28.1 -0.0 26 81-106 46-72 (79)
67 3mml_A Allophanate hydrolase s 67.7 7.2 0.00025 31.1 4.8 31 78-108 78-110 (318)
68 1ksk_A Ribosomal small subunit 66.1 3.4 0.00012 30.6 2.5 26 80-105 27-53 (234)
69 1vio_A Ribosomal small subunit 65.1 6.6 0.00022 29.3 3.9 26 80-105 26-52 (243)
70 2vqe_D 30S ribosomal protein S 63.4 4.8 0.00016 30.0 2.8 28 80-107 123-151 (209)
71 3dh3_A Ribosomal large subunit 60.7 4.8 0.00016 31.4 2.5 27 80-106 30-56 (290)
72 3bbn_D Ribosomal protein S4; s 58.6 6 0.0002 29.5 2.6 29 80-108 113-142 (201)
73 1v9f_A Ribosomal large subunit 51.1 4.4 0.00015 31.7 0.8 28 80-107 41-69 (325)
74 3oep_A Putative uncharacterize 49.6 32 0.0011 28.9 5.9 31 78-108 295-327 (494)
75 1wv3_A Similar to DNA segregat 48.6 22 0.00076 26.6 4.4 39 27-74 14-54 (238)
76 3u7z_A Putative metal binding 47.2 13 0.00043 24.8 2.5 26 81-106 69-97 (101)
77 3jxo_A TRKA-N domain protein; 41.2 11 0.00039 22.9 1.5 20 92-111 57-76 (86)
78 3plx_B Aspartate 1-decarboxyla 39.4 12 0.0004 25.2 1.4 55 62-120 19-83 (102)
79 4g65_A TRK system potassium up 39.3 15 0.00052 30.0 2.3 46 83-128 191-242 (461)
80 1vc3_B L-aspartate-alpha-decar 38.7 12 0.00042 24.8 1.4 47 71-120 33-84 (96)
81 1uhe_A Aspartate 1-decarboxyla 37.9 12 0.00042 24.9 1.2 68 57-128 12-92 (97)
82 3r8n_D 30S ribosomal protein S 35.8 3.8 0.00013 30.7 -1.7 28 80-107 119-147 (205)
83 3oug_A Aspartate 1-decarboxyla 35.7 25 0.00085 24.0 2.5 64 54-121 37-111 (114)
84 2cqj_A BRMS2, U3 small nucleol 34.9 6.3 0.00022 24.3 -0.5 28 80-107 32-62 (71)
85 2c45_A Aspartate 1-decarboxyla 30.0 25 0.00085 24.8 1.9 64 54-120 34-108 (139)
86 1dd1_A SMAD4; B-sheet sandwich 29.5 29 0.00098 27.0 2.3 41 63-104 103-153 (268)
87 1wwt_A Threonyl-tRNA synthetas 28.6 24 0.00081 21.8 1.4 30 81-110 47-76 (88)
88 1pqh_A Aspartate 1-decarboxyla 28.5 24 0.0008 25.0 1.5 62 56-120 53-125 (143)
89 3hp7_A Hemolysin, putative; st 28.1 22 0.00076 27.5 1.5 26 80-105 31-59 (291)
90 1ygs_A SMAD4; tumor suppressor 26.7 29 0.001 26.4 1.9 41 63-104 69-119 (234)
91 2ab1_A Hypothetical protein; H 26.1 21 0.0007 24.2 0.8 56 73-129 5-69 (122)
92 1l7l_A PA-I galactophilic lect 24.4 50 0.0017 22.5 2.5 19 86-106 12-30 (121)
93 2gm2_A Conserved hypothetical 24.2 53 0.0018 22.4 2.7 59 70-129 10-72 (132)
94 3va7_A KLLA0E08119P; carboxyla 23.0 79 0.0027 29.4 4.3 30 79-108 552-583 (1236)
95 3j20_K 30S ribosomal protein S 22.9 76 0.0026 22.0 3.3 20 70-91 15-34 (135)
96 1khx_A SMAD2; TGF-beta signali 22.7 2E+02 0.0069 21.5 5.9 41 63-104 96-144 (227)
97 1wxq_A GTP-binding protein; st 22.4 23 0.00078 28.4 0.6 25 85-109 373-397 (397)
98 3a0j_A Cold shock protein; OB- 21.8 56 0.0019 19.8 2.2 53 68-121 12-71 (73)
99 3u5c_Q RP61R, 40S ribosomal pr 20.8 88 0.003 21.9 3.3 19 71-91 19-37 (143)
100 2fvt_A Conserved hypothetical 20.7 44 0.0015 23.0 1.7 32 73-105 15-46 (135)
101 3ahu_A Protein HFQ; SM-like mo 20.3 50 0.0017 20.9 1.8 28 84-111 30-57 (78)
No 1
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=195.21 Aligned_cols=99 Identities=26% Similarity=0.343 Sum_probs=89.9
Q ss_pred CcCCceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc-----CCEEEEEe
Q psy5454 2 KSELIKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT-----EGIVTVTP 76 (129)
Q Consensus 2 ~~~~~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~-----~g~v~L~p 76 (129)
+.++..|||+|||+||+++ + +++|+|++|.|+|||.++ ...+||+|+|++|+++||.|.+. .+.|+|+|
T Consensus 63 ~~~~~~PhLvnLn~Dp~ls--~-~l~y~L~~g~t~VGr~~~---~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p 136 (184)
T 4egx_A 63 FSPKKTPHLVNLNEDPLMS--E-CLLYYIKDGITRVGREDG---ERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEP 136 (184)
T ss_dssp ECCSSSCEEEECCCCTTCS--S-CSEEECCSEEEEEECSSS---SSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEE
T ss_pred ecCCCCceEEeccCCcccC--c-eEEEEECCCcCcCCCCCc---CCCCeEEECccccccccEEEEEcCCCCceEEEEEee
Confidence 3567899999999999999 9 999999999999999864 24689999999999999999985 36799999
Q ss_pred CCCCCceEEcCEEcceeEEcCCCCEEEEecC
Q psy5454 77 CSREAETFVNGQRIFETTILQVVVAASAVAE 107 (129)
Q Consensus 77 ~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~~ 107 (129)
+ +++.|||||++|.+++.|+|||||.||..
T Consensus 137 ~-~~a~t~VNG~~I~~~~~L~~GDrI~lG~~ 166 (184)
T 4egx_A 137 C-EGADTYVNGKKVTEPSILRSGNRIIMGKS 166 (184)
T ss_dssp C-TTCCEEETTEECCSCEECCTTCEEEETTT
T ss_pred C-CCCeEEEcCEEccccEEcCCCCEEEECCC
Confidence 9 68999999999999999999999999873
No 2
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.96 E-value=5.5e-29 Score=177.43 Aligned_cols=96 Identities=30% Similarity=0.295 Sum_probs=83.3
Q ss_pred CCcCCceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEE-cCCEEEEEeCCC
Q psy5454 1 MKSELIKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAH-TEGIVTVTPCSR 79 (129)
Q Consensus 1 ~~~~~~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~-~~g~v~L~p~ss 79 (129)
+|++...|||+|||+||+++ + +++|+|+++ |+|||.+ ++||+|+|+.|+++||.|.+ .+|.++|+|++
T Consensus 20 i~~~~~~PhLvnLn~Dp~~s--~-~l~y~L~~~-t~IGR~~------~~DI~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~- 88 (124)
T 3fm8_A 20 IKVGDDKCFLVNLNADPALN--E-LLVYYLKEH-TLIGSAN------SQDIQLCGMGILPEHCIIDITSEGQVMLTPQK- 88 (124)
T ss_dssp -------CEEEETTCCTTSS--C-CCEEECCSE-EEEESST------TCSEECCSTTCCSSCEEEEECTTSCEEEEECT-
T ss_pred EeecCCccEEEEeCCCCccC--c-eEEEECCCC-eEECCCC------CCCEEECCCCeecceEEEEECCCCeEEEEECC-
Confidence 58899999999999999999 8 999999875 9999985 59999999999999999998 58999999995
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEecC
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVAE 107 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~~ 107 (129)
+++|||||++|.+++.|++||+|.||..
T Consensus 89 ~ngt~VNG~~V~~~~~L~~GD~I~lG~~ 116 (124)
T 3fm8_A 89 NTRTFVNGSSVSSPIQLHHGDRILWGNN 116 (124)
T ss_dssp TCCEEETTEECCSCEEECTTCEEEETTT
T ss_pred CCCEEECCEEcCCcEECCCCCEEEECCC
Confidence 7899999999999999999999999964
No 3
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.96 E-value=8.2e-29 Score=181.79 Aligned_cols=98 Identities=26% Similarity=0.335 Sum_probs=87.1
Q ss_pred CcCCceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcC-----CEEEEEe
Q psy5454 2 KSELIKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE-----GIVTVTP 76 (129)
Q Consensus 2 ~~~~~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~-----g~v~L~p 76 (129)
+++.+.|||+|||+||+++ + +++|+|+++.++|||.++ ...|||+|.++.|+++||.|.+.+ +.+++.+
T Consensus 33 ~~~~~~PhLvnLn~Dp~ls--~-~lvy~L~~g~t~IGR~~~---~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~ 106 (154)
T 4ejq_A 33 FSPKKTPHLVNLNEDPLMS--E-CLLYYIKDGITRVGREDG---ERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEP 106 (154)
T ss_dssp CCCSSSCEEEECCCCTTCS--S-EEEEECCSEEEEEECSSC---SSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEE
T ss_pred ecCCCCceEEEecCCcccC--c-eEEEEeCCCCEEEcCCCC---CCCCCEEECCCCcccccEEEEEecCCCceeEEEEec
Confidence 4567899999999999999 8 999999999999999864 236999999999999999999864 3456666
Q ss_pred CCCCCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 77 CSREAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 77 ~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
. +.++|||||++|.+++.|++||+|.||.
T Consensus 107 ~-S~ngt~VNG~~i~~~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 107 C-EGADTYVNGKKVTEPSILRSGNRIIMGK 135 (154)
T ss_dssp C-TTCCEEETTEECCSCEECCTTCEEEETT
T ss_pred C-CCCceEECCEEcCCceECCCCCEEEECC
Confidence 5 7899999999999999999999999986
No 4
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.90 E-value=9.4e-24 Score=148.48 Aligned_cols=100 Identities=43% Similarity=0.607 Sum_probs=89.7
Q ss_pred CcCCceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCC
Q psy5454 2 KSELIKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREA 81 (129)
Q Consensus 2 ~~~~~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~ 81 (129)
+.+...|||+++++||.++..+ ...|.|.++.++|||.. +..+||+|.++.|+++||.|...++.|+|+|+++.+
T Consensus 6 ~~~~~~p~Lv~l~~d~~~s~~~-~~~~~L~~~~~~IGr~r----~~~~di~l~~~~vSr~Ha~i~~~~~~~~l~dl~S~n 80 (120)
T 1wln_A 6 SGPEKLPYLVELSPDGSDSRDK-PKLYRLQLSVTEVGTEK----FDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 80 (120)
T ss_dssp CCGGGCCEEEEECSSSCCCSSC-CCEEECCSEEEECSSSC----CSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred cCCCCcCEEEEeCCChhhccCc-cEEEEECCCCEEECCCC----CCCCcEEECCCCCchhheEEEEcCCEEEEEECCCCC
Confidence 4677899999999999985213 58999999999999852 136999999999999999999999999999999899
Q ss_pred ceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 82 ETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 82 ~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
+|||||++|.+++.|++||+|.||.
T Consensus 81 gt~vNg~~i~~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 81 ETYVDGQRISETTMLQSGMRLQFGT 105 (120)
T ss_dssp CEEETSCBCSSCEEECTTCEEEETT
T ss_pred CEEECCEEcCCCEECCCCCEEEECC
Confidence 9999999999989999999999997
No 5
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.73 E-value=9.3e-18 Score=118.69 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=81.5
Q ss_pred CceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceE
Q psy5454 5 LIKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETF 84 (129)
Q Consensus 5 ~~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~ 84 (129)
...|+|+.+..++... ..|.|..+..+|||.+ .+||+|.++.|+++||.|...++.|+|+|++|.++||
T Consensus 10 ~~~~~L~v~~~~~~~g-----~~~~l~~~~~~IGR~~------~~di~l~d~~VSr~Ha~i~~~~~~~~l~Dl~S~nGt~ 78 (128)
T 1r21_A 10 WPTRRLVTIKRSGVDG-----PHFPLSLSTCLFGRGI------ECDIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQ 78 (128)
T ss_dssp CCCEEEEEEEETTEEE-----EEEECCSSEEEEESST------TSSEECCCTTSCTTCEEEEECSSCEEECCCCSSSCCE
T ss_pred CCceEEEEEeCCCCCc-----eEEEECCCCEEECCCC------CCCEEECCCCCChhHEEEEEECCEEEEEECCCCCCEE
Confidence 3468999998665443 6789988999999985 5999999999999999999999999999999899999
Q ss_pred EcCEEcceeEEcCCCCEEEEec
Q psy5454 85 VNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 85 VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
|||++|.+++.|++||.|.||.
T Consensus 79 vNg~~i~~~~~L~~Gd~i~iG~ 100 (128)
T 1r21_A 79 VNGSVIDEPVRLKHGDVITIID 100 (128)
T ss_dssp ETTEECSSCEECCTTEEEECSS
T ss_pred ECCEECCCcEEcCCCCEEEECC
Confidence 9999999889999999999986
No 6
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.70 E-value=2.1e-16 Score=109.89 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=76.9
Q ss_pred ceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceEE
Q psy5454 6 IKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFV 85 (129)
Q Consensus 6 ~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~V 85 (129)
..++|..+... .. + ..|.|..+..+|||.+ .+||+|.++.|+++||.|...++.|+|+|++|.++|||
T Consensus 10 ~~~~L~v~~g~--~~--g--~~~~l~~~~~~IGR~~------~~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~v 77 (115)
T 2xt9_B 10 GSALLVVKRGP--NA--G--SRFLLDQPTTSAGRHP------DSDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYV 77 (115)
T ss_dssp SCEEEEEEEST--TT--T--CEEEECSSEEEEESST------TSSEECCSTTSCSSCEEEEEETTEEEEEECSCSSCEEE
T ss_pred CcEEEEEEeCC--CC--C--eEEEECCCCEEECCCC------CCCEEeCCcccChhheEEEEECCEEEEEECCCCCCeEE
Confidence 44667777643 23 3 5688988899999985 59999999999999999999999999999988999999
Q ss_pred cCEEcceeEEcCCCCEEEEecC
Q psy5454 86 NGQRIFETTILQVVVAASAVAE 107 (129)
Q Consensus 86 NG~~I~~~~~L~~GDrI~~~~~ 107 (129)
||++|. +..|++||+|.||..
T Consensus 78 ng~~i~-~~~L~~gd~i~iG~~ 98 (115)
T 2xt9_B 78 NREPVD-SAVLANGDEVQIGKF 98 (115)
T ss_dssp TTEECS-EEEECTTCEEEETTE
T ss_pred CCEEcc-eEECCCCCEEEECCE
Confidence 999997 689999999999873
No 7
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.69 E-value=1.4e-16 Score=108.18 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=69.7
Q ss_pred EEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEe
Q psy5454 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQVVVAASAV 105 (129)
Q Consensus 26 ~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~ 105 (129)
..|.|.++..+|||.+ .|||+|.++.|++.||.|...++.++|+|++|.++|||||+++. +..|++||+|.+|
T Consensus 16 ~~~~l~~~~~~IGR~~------~~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~-~~~L~~gd~i~iG 88 (100)
T 3po8_A 16 RTYQLREGSNIIGRGQ------DAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQ-EWQLADGDVIRLG 88 (100)
T ss_dssp CEEECCSEEEEEESST------TCSEECCCTTSCSSCEEEEECSSCEEEEECSCSSCCEETTEECS-EEECCTTCEEEET
T ss_pred cEEEECCCCEEEeCCC------CCCEECCCCCcChhhCEEEEeCCEEEEEECCCCCCEEECCEECc-eEECCCCCEEEEC
Confidence 5788998899999985 69999999999999999999999999999988999999999996 6899999999998
Q ss_pred cC
Q psy5454 106 AE 107 (129)
Q Consensus 106 ~~ 107 (129)
..
T Consensus 89 ~~ 90 (100)
T 3po8_A 89 HS 90 (100)
T ss_dssp TE
T ss_pred CE
Confidence 74
No 8
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.68 E-value=4e-16 Score=107.01 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=69.3
Q ss_pred EEEEcCCCc-eEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc-CCEEEEEeCCCCCceEEcCEEcceeEEcCCCCEEE
Q psy5454 26 KRHRLHPNV-TEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT-EGIVTVTPCSREAETFVNGQRIFETTILQVVVAAS 103 (129)
Q Consensus 26 ~~~~L~~~~-t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~-~g~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~ 103 (129)
..|.|..+. .+|||.+ ..|||+|.++.||++||.|... ++.|+|+|++|.++|||||++|.+++.|++||+|.
T Consensus 17 ~~~~l~~~~~~~iGR~~-----~~~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~i~~~~~L~~Gd~i~ 91 (106)
T 3gqs_A 17 AEFHLDSGKTYIVGSDP-----QVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIEHQSTLSANQVVA 91 (106)
T ss_dssp CEEEECTTCEEEEESCT-----TTCSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEECSSEEECCTTCCEE
T ss_pred EEEEECCCCEEEEeECC-----CcCCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEECCCCeECCCCCEEE
Confidence 578888876 5999984 2589999999999999999998 78999999999999999999999888999999999
Q ss_pred EecC
Q psy5454 104 AVAE 107 (129)
Q Consensus 104 ~~~~ 107 (129)
+|..
T Consensus 92 ~G~~ 95 (106)
T 3gqs_A 92 LGTT 95 (106)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 9863
No 9
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.67 E-value=4.9e-16 Score=112.50 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=75.0
Q ss_pred eeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceEEc
Q psy5454 7 KSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVN 86 (129)
Q Consensus 7 ~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~VN 86 (129)
.++|+.+.. |. . + ..|.|..+..+|||.+ .|||+|.++.|+++||.|...++.|+|+|++|.++||||
T Consensus 46 ~~~L~v~~G-~~-~--g--~~~~L~~~~~~IGR~~------~~di~l~d~~VSr~Ha~I~~~~~~~~l~DlgS~NGT~VN 113 (143)
T 2kb3_A 46 SALLVVKRG-PN-A--G--ARFLLDQPTTTAGRHP------ESDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYVN 113 (143)
T ss_dssp CEEEEEEES-TT-T--T--CEEEECSSEEEESSCT------TCSBCCCCSSCCSSSEEEEEETTEEEEEESCCSSCCEET
T ss_pred cEEEEEEeC-CC-C--C--eEEEeCCCCeeccCCC------CCCEEeCCCCcChhhEEEEEECCEEEEEECCCcCCeEEC
Confidence 345666553 32 2 3 5688888999999985 599999999999999999999999999999999999999
Q ss_pred CEEcceeEEcCCCCEEEEec
Q psy5454 87 GQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 87 G~~I~~~~~L~~GDrI~~~~ 106 (129)
|++|. +..|++||+|.||.
T Consensus 114 g~~i~-~~~L~~GD~I~iG~ 132 (143)
T 2kb3_A 114 REPRN-AQVMQTGDEIQIGK 132 (143)
T ss_dssp TEECS-EEECCTTEEEEETT
T ss_pred CEEcc-eEECCCCCEEEECC
Confidence 99997 68999999999986
No 10
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.66 E-value=4.4e-16 Score=113.14 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=75.6
Q ss_pred CceeEEEEecCCCCCCCCCCcEEEEcC-CCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEE--------cCCEEEEE
Q psy5454 5 LIKSSLLLKNYNGSEITSGSPKRHRLH-PNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAH--------TEGIVTVT 75 (129)
Q Consensus 5 ~~~PhLvnln~dp~ls~~~~~~~~~L~-~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~--------~~g~v~L~ 75 (129)
...++|+.++.+ . + ..|.|. .+..+|||.+ .|||+|.++.||+.||.|.. .++.|+|+
T Consensus 16 ~~~~~L~~~~~~---~--g--~~~~l~~~~~~~IGR~~------~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~ 82 (151)
T 2jqj_A 16 TCLGHLVNLIPG---K--E--QKVEITNRNVTTIGRSR------SCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVI 82 (151)
T ss_dssp CEEEEEEEEETT---E--E--EEEEEECCSCEEEESST------TSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEEEecCC---C--c--eEEEEcCCCeEEeCCCC------CCCEEECCCCCccccCEEEEecccCCcCcCCEEEEE
Confidence 456779988854 2 3 456666 4889999985 59999999999999999999 67899999
Q ss_pred eCCCCCceEEcCEEcce-eEEcCCCCEEEEec
Q psy5454 76 PCSREAETFVNGQRIFE-TTILQVVVAASAVA 106 (129)
Q Consensus 76 p~ss~~~t~VNG~~I~~-~~~L~~GDrI~~~~ 106 (129)
|+ |.++|||||++|.. ++.|++||.|.||.
T Consensus 83 Dl-S~NGT~VNg~~i~~~~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 83 DK-SRNGTFINGNRLVKKDYILKNGDRIVFGK 113 (151)
T ss_dssp EC-CSSCEEETTEECCSSCEEECSSEEEEETT
T ss_pred EC-CCCCeEECCEEcCCCceECCCCCEEEECC
Confidence 99 89999999999986 69999999999986
No 11
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.66 E-value=2.6e-16 Score=109.67 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=76.5
Q ss_pred ceeEEEEecCCCCCCCCCCcEEEEcCCC-ceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceE
Q psy5454 6 IKSSLLLKNYNGSEITSGSPKRHRLHPN-VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETF 84 (129)
Q Consensus 6 ~~PhLvnln~dp~ls~~~~~~~~~L~~~-~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~ 84 (129)
..|+|...-.++... + ..|.|..+ ..+|||.+ ..+||+|.++.|+++||.|...++.|+|+|++|.++||
T Consensus 9 ~~p~l~L~v~~g~~~--g--~~~~l~~~~~~~iGR~~-----~~~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGT~ 79 (118)
T 1uht_A 9 VTPSLRLVFVKGPRE--G--DALDYKPGSTIRVGRIV-----RGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTL 79 (118)
T ss_dssp CSCEEEEEESSSTTT--T--CBCCBCTTCCEEEESSS-----TTCSEECCSSSSCTTCEEEEECSSSEEEECCCCSSCCE
T ss_pred CCCeEEEEEEeCCCC--C--cEEEECCCCEEEEcCCC-----CCCCEEeCCCCCchHHeEEEEECCEEEEEECCCCCCeE
Confidence 345555544444444 4 46778764 68999983 26899999999999999999999999999998899999
Q ss_pred EcCEEcce--eEEcCCCCEEEEecC
Q psy5454 85 VNGQRIFE--TTILQVVVAASAVAE 107 (129)
Q Consensus 85 VNG~~I~~--~~~L~~GDrI~~~~~ 107 (129)
|||++|.. ++.|++||+|.||..
T Consensus 80 vng~~l~~~~~~~L~~gd~i~lG~~ 104 (118)
T 1uht_A 80 LNSNALDPETSVNLGDGDVIKLGEY 104 (118)
T ss_dssp ESSSBCCTTCEEECCTTEEEEETTT
T ss_pred ECCEECCCCCeEEcCCCCEEEECCe
Confidence 99999973 789999999999874
No 12
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.66 E-value=6.5e-16 Score=114.16 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=69.4
Q ss_pred EEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEe
Q psy5454 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQVVVAASAV 105 (129)
Q Consensus 26 ~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~ 105 (129)
..|.|..+..+|||.+ .|||+|.++.||++||.|.+.++.|+|+|++|.++|||||++|. +..|++||+|.||
T Consensus 68 ~~~~L~~~~~~IGR~~------~~di~l~d~~VSr~HA~I~~~~~~~~l~DlgS~NGT~VNg~~i~-~~~L~~GD~I~iG 140 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHP------DSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVD-SAVLANGDEVQIG 140 (162)
T ss_dssp CEEETTSSEEEEESCS------SSSEESTTTSSSSCSEEEEEETTEEEEECCCCSSCEEETTBCCS-EEECCSSCEEEET
T ss_pred eEEEECCCCEEECCCC------CCCEEECCCCcChhhEEEEEECCEEEEEECCCCCCeEECCEEcc-eEECCCCCEEEEC
Confidence 5789999999999985 59999999999999999999999999999999999999999997 6899999999998
Q ss_pred c
Q psy5454 106 A 106 (129)
Q Consensus 106 ~ 106 (129)
.
T Consensus 141 ~ 141 (162)
T 2kfu_A 141 K 141 (162)
T ss_dssp T
T ss_pred C
Confidence 6
No 13
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.63 E-value=1.6e-15 Score=108.42 Aligned_cols=91 Identities=16% Similarity=0.020 Sum_probs=76.7
Q ss_pred ceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc--CCEEEEEeCCCCCce
Q psy5454 6 IKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT--EGIVTVTPCSREAET 83 (129)
Q Consensus 6 ~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~--~g~v~L~p~ss~~~t 83 (129)
...+|..+... ... + ..|.|..+.++|||.+ .|||+|.++.||++||.|... ++.++|+|++|.++|
T Consensus 23 p~g~L~v~~g~-~~~--g--~~~~L~~~~~~IGR~~------~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT 91 (132)
T 3va4_A 23 PIGQLRLFSGT-HGP--E--RDFPLYLGKNVVGRSP------DCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGT 91 (132)
T ss_dssp CSEEEEECCBT-TBS--C--EEEEECSEEEEEESST------TSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCE
T ss_pred CcEEEEEEeCC-CCC--c--eEEEECCCCEEEccCC------CCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCe
Confidence 34567777532 234 4 7899999999999985 599999999999999999986 689999999999999
Q ss_pred EEcCEEc----ceeEEcCCCCEEEEecC
Q psy5454 84 FVNGQRI----FETTILQVVVAASAVAE 107 (129)
Q Consensus 84 ~VNG~~I----~~~~~L~~GDrI~~~~~ 107 (129)
||||++| .++..|++||+|.||..
T Consensus 92 ~vNg~~i~l~~~~~~~L~~GD~I~lG~~ 119 (132)
T 3va4_A 92 QIVKPPRVLPPGVSHRLRDQELILFADF 119 (132)
T ss_dssp EETTTTEEECTTCCEECCTTCEEEETTE
T ss_pred EECCEEcccCCCCEEECCCCCEEEECCE
Confidence 9999985 26789999999999864
No 14
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.63 E-value=1.5e-15 Score=105.35 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=70.0
Q ss_pred EEEEcCCCceEEcCCCCCCCCCcccEEEcCC-CCCCCcEEEEEc--CCEEEEEeCCCCCceEEcCEEcce--eEEcCCCC
Q psy5454 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGP-NIQPRHCVIAHT--EGIVTVTPCSREAETFVNGQRIFE--TTILQVVV 100 (129)
Q Consensus 26 ~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~-~I~~~Hc~I~~~--~g~v~L~p~ss~~~t~VNG~~I~~--~~~L~~GD 100 (129)
..|.|..+..+|||.+ .+||+|.+. .||++||.|... ++.++|+| +|.++|||||++|.. ++.|++||
T Consensus 17 ~~~~l~~~~~~iGR~~------~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D-~S~NGt~vng~~l~~~~~~~L~~GD 89 (116)
T 1lgp_A 17 PHVLLRKREWTIGRRR------GCDLSFPSNKLVSGDHCRIVVDEKSGQVTLED-TSTSGTVINKLKVVKKQTCPLQTGD 89 (116)
T ss_dssp CCEEECSSEEEEESST------TSSEECTTCTTSCTTCEEEEECTTTCCEEEEE-CSSSCCCCCCCCCCCSSCCCCCTTC
T ss_pred cEEEECCCCEEECCCC------CCCEEeCCCCCCChhHeEEEEECCCCeEEEEE-CCcCCcEECCEEcCCCCcEECCCCC
Confidence 4577888899999985 599999865 999999999996 78999999 789999999999983 78999999
Q ss_pred EEEEecCchhhh
Q psy5454 101 AASAVAEKQQQS 112 (129)
Q Consensus 101 rI~~~~~~~~~~ 112 (129)
.|.||..+.+.+
T Consensus 90 ~i~~G~~~~~~~ 101 (116)
T 1lgp_A 90 VIYLVYRKNEPE 101 (116)
T ss_dssp EEEEECCSSCGG
T ss_pred EEEEeccCCCCC
Confidence 999999765444
No 15
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=107.67 Aligned_cols=75 Identities=17% Similarity=0.109 Sum_probs=63.2
Q ss_pred EEEcCCC-ceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEE-----------cCCEEEEEeCCCCCceEEcCEEcc--e
Q psy5454 27 RHRLHPN-VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAH-----------TEGIVTVTPCSREAETFVNGQRIF--E 92 (129)
Q Consensus 27 ~~~L~~~-~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~-----------~~g~v~L~p~ss~~~t~VNG~~I~--~ 92 (129)
.+.|... ..+|||.+ .|||+|..+.||++||.|.+ .++.++|+|++|.+||||||++|. .
T Consensus 34 ~~~L~~~~~~~IGR~~------~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~~~~ 107 (130)
T 4h87_A 34 TRSLKGTSYCLFGRLS------GCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRT 107 (130)
T ss_dssp EEECTTCSEEEEESST------TSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECCTTC
T ss_pred eEEeCCCceEEEcCCc------CCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECCCCc
Confidence 4667644 46999985 69999999999999999964 356899999999999999999996 5
Q ss_pred eEEcCCCCEEEEecC
Q psy5454 93 TTILQVVVAASAVAE 107 (129)
Q Consensus 93 ~~~L~~GDrI~~~~~ 107 (129)
++.|++||.|.||..
T Consensus 108 ~~~L~~GD~I~~G~s 122 (130)
T 4h87_A 108 YCRVHVGHVVRFGGS 122 (130)
T ss_dssp CEECCTTCEEEETTC
T ss_pred eeECCCCCEEEECCc
Confidence 689999999999863
No 16
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.61 E-value=4.9e-15 Score=106.24 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=76.4
Q ss_pred CceeEEEEecCCCCCCCCCCcEEEEcCCC-----ceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcC--CEEEEEeC
Q psy5454 5 LIKSSLLLKNYNGSEITSGSPKRHRLHPN-----VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE--GIVTVTPC 77 (129)
Q Consensus 5 ~~~PhLvnln~dp~ls~~~~~~~~~L~~~-----~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~--g~v~L~p~ 77 (129)
...++|..++. | .. + ..|.|..+ ..+|||.+ .+||+|.++.||++||.|...+ +.|+|+|+
T Consensus 5 ~~~~~L~v~~G-~-~~--g--~~~~l~~~~~~~~~~~IGR~~------~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl 72 (139)
T 1mzk_A 5 SSWLFLEVIAG-P-AI--G--LQHAVNSTSSSKLPVKLGRVS------PSDLALKDSEVSGKHAQITWNSTKFKWELVDM 72 (139)
T ss_dssp SEEEEEEECSS-T-TC--S--CEEEECTTCSTTCSEEEESSS------SCSEECCCTTSSSEEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEEEeC-C-CC--C--eEEEecCCCCccceEEeeCCC------CCCEEeCCCCCChHHcEEEEECCCCEEEEEEC
Confidence 34567777763 3 23 3 57888876 68999985 5899999999999999999975 48999999
Q ss_pred CCCCceEEcCEEcce----------eEEcCCCCEEEEecC
Q psy5454 78 SREAETFVNGQRIFE----------TTILQVVVAASAVAE 107 (129)
Q Consensus 78 ss~~~t~VNG~~I~~----------~~~L~~GDrI~~~~~ 107 (129)
+|.++|||||++|.. ++.|++||.|.||..
T Consensus 73 gS~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~ 112 (139)
T 1mzk_A 73 GSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTT 112 (139)
T ss_dssp TCSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSSS
T ss_pred CCCCCEEECCEECcCcccccccCCceEECCCCCEEEECCE
Confidence 999999999999984 799999999999874
No 17
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.61 E-value=4.6e-15 Score=105.75 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=72.8
Q ss_pred ceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc---CC--EEEEEeC---
Q psy5454 6 IKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT---EG--IVTVTPC--- 77 (129)
Q Consensus 6 ~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~---~g--~v~L~p~--- 77 (129)
...+|+.+... .. ...|.|..+..+|||.+ .|||+|.++.||+.||.|... +| .|+|+|+
T Consensus 9 ~~~~~lvv~~~--~~----~~~~~l~~~~~~IGR~~------~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~ 76 (131)
T 3hx1_A 9 LQEHILIILDD--AG----RREVLLTETFYTIGRSP------RADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDED 76 (131)
T ss_dssp CCEEEEEEEET--TE----EEEEEECSSEEEEESST------TSSEECCCSSSCTTCEEEEEC------CCEEEEESCTT
T ss_pred CcceEEEEECC--CC----cEEEEECCCCEEECCCC------CCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCC
Confidence 34556666532 12 36788998999999985 599999999999999999986 33 4999999
Q ss_pred --CCCCceEEcCEEcceeEEcCCCCEEEEecC
Q psy5454 78 --SREAETFVNGQRIFETTILQVVVAASAVAE 107 (129)
Q Consensus 78 --ss~~~t~VNG~~I~~~~~L~~GDrI~~~~~ 107 (129)
+|.++|||||++|.+ ..|++||.|.||..
T Consensus 77 ~~~S~NGT~vNg~~i~~-~~L~~GD~I~iG~~ 107 (131)
T 3hx1_A 77 GQSSVNGLMINGKKVQE-HIIQTGDEIVMGPQ 107 (131)
T ss_dssp SCCCSSCEEETTEEESE-EECCTTCEEECSTT
T ss_pred CCCCCCceEECCEEeEe-EECCCCCEEEECCE
Confidence 688999999999976 89999999999863
No 18
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.61 E-value=3.1e-15 Score=110.17 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=69.4
Q ss_pred EEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEe
Q psy5454 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQVVVAASAV 105 (129)
Q Consensus 26 ~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~ 105 (129)
..|.|..+..+|||.+ .|||+|.++.||++||.|...++.|+|+|++|.++|||||++|. ++.|++||+|.||
T Consensus 78 ~~~~L~~~~~~IGR~~------~~dI~L~d~~VSr~HA~I~~~~~~~~l~DlgStNGT~VNG~~i~-~~~L~~GD~I~lG 150 (157)
T 3oun_A 78 RTYQLREGSNIIGRGQ------DAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQ-EWQLADGDVIRLG 150 (157)
T ss_dssp CEEECCSEEEEEESST------TCSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEECS-EEECCTTCEEEET
T ss_pred eEEEECCCcEEEEeCC------CCCEEeCCCCcChhHEEEEEECCEEEEEECCCCCCeEECCEECc-eEECCCCCEEEEC
Confidence 5788998899999985 69999999999999999999999999999988999999999996 6899999999998
Q ss_pred cC
Q psy5454 106 AE 107 (129)
Q Consensus 106 ~~ 107 (129)
..
T Consensus 151 ~~ 152 (157)
T 3oun_A 151 HS 152 (157)
T ss_dssp TE
T ss_pred CE
Confidence 64
No 19
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.59 E-value=7e-15 Score=106.62 Aligned_cols=74 Identities=18% Similarity=0.099 Sum_probs=66.5
Q ss_pred EEEcCCCceEEcCCCCCCCCCcccEEEcCCC---------CCCCcEEEEEcCC-----EEEEEeCCCCCceEEcCEEcc-
Q psy5454 27 RHRLHPNVTEVGSDRASPYGQSQSLQLFGPN---------IQPRHCVIAHTEG-----IVTVTPCSREAETFVNGQRIF- 91 (129)
Q Consensus 27 ~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~---------I~~~Hc~I~~~~g-----~v~L~p~ss~~~t~VNG~~I~- 91 (129)
.+.|..+..+|||.+ .|||+|.++. ||++||.|...++ .|+|+|+ |.+||||||++|.
T Consensus 42 ~i~L~~~~~~IGR~~------~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~-StNGT~VNg~~i~~ 114 (149)
T 1gxc_A 42 NLECVNDNYWFGRDK------SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDH-SGNGTFVNTELVGK 114 (149)
T ss_dssp CEEECSSEEEEESST------TCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEEC-CSSCEEETTEECCT
T ss_pred eEEECCCCEEecCCC------CCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEEC-CCCCeEECCEECCC
Confidence 367788899999985 6999999985 9999999999766 9999998 7899999999998
Q ss_pred -eeEEcCCCCEEEEecC
Q psy5454 92 -ETTILQVVVAASAVAE 107 (129)
Q Consensus 92 -~~~~L~~GDrI~~~~~ 107 (129)
+++.|++||+|.||..
T Consensus 115 ~~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 115 GKRRPLNNNSEIALSLS 131 (149)
T ss_dssp TCEEECCTTEEEEESST
T ss_pred CCeEECCCCCEEEECCC
Confidence 6899999999999985
No 20
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.59 E-value=7.9e-15 Score=105.03 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=66.7
Q ss_pred EEEcC-CCceEEcCCCCCCCCCcccEEEcCCC----CCCCcEEEEE-cCCEEEEEeCCCCCceEEcCEEcce--eEEcCC
Q psy5454 27 RHRLH-PNVTEVGSDRASPYGQSQSLQLFGPN----IQPRHCVIAH-TEGIVTVTPCSREAETFVNGQRIFE--TTILQV 98 (129)
Q Consensus 27 ~~~L~-~~~t~IGr~~~~~~~~~~dI~L~g~~----I~~~Hc~I~~-~~g~v~L~p~ss~~~t~VNG~~I~~--~~~L~~ 98 (129)
.|.|. ....+|||.+ .+||+|.++. ||+.||.|.. .++.|+|+|++|.++|||||++|.. ++.|++
T Consensus 21 ~~~l~~~~~~~IGR~~------~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~ 94 (138)
T 2pie_A 21 WLLLEDGCEVTVGRGF------GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQ 94 (138)
T ss_dssp BEEECTTCCEEEESSS------SSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCT
T ss_pred EEEecCCCeEEECCCC------CCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECCEEcCCCCcEECCC
Confidence 35565 5678999985 6999999998 9999999999 6889999999889999999999975 799999
Q ss_pred CCEEEEecC
Q psy5454 99 VVAASAVAE 107 (129)
Q Consensus 99 GDrI~~~~~ 107 (129)
||.|.||..
T Consensus 95 GD~I~lG~~ 103 (138)
T 2pie_A 95 GDYIQLGVP 103 (138)
T ss_dssp TCEEEESCC
T ss_pred CCEEEECCC
Confidence 999999983
No 21
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.58 E-value=4.4e-15 Score=108.86 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=65.2
Q ss_pred EEEEcCCCc--eEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcC---------------CEEEEEeCCCCCceEEcCE
Q psy5454 26 KRHRLHPNV--TEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE---------------GIVTVTPCSREAETFVNGQ 88 (129)
Q Consensus 26 ~~~~L~~~~--t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~---------------g~v~L~p~ss~~~t~VNG~ 88 (129)
..++|..+. .+|||.+ .|||+|.++.||++||.|.... +.|+|+|+ |.++|||||+
T Consensus 18 ~~i~L~~~~~~~~IGR~~------~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNGT~VNg~ 90 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSE------DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNN 90 (158)
T ss_dssp CCEEETTSCSCEEEESST------TSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTCCEETTE
T ss_pred eEEEEcCCCceEEECCCC------CCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCCeEECCE
Confidence 567788777 9999985 5999999999999999999865 88999999 8899999999
Q ss_pred Ecce--eEEcCCCCEEEE
Q psy5454 89 RIFE--TTILQVVVAASA 104 (129)
Q Consensus 89 ~I~~--~~~L~~GDrI~~ 104 (129)
+|.. ++.|++||+|.|
T Consensus 91 ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 91 RMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp ECCSSEEEECCSSCCEES
T ss_pred EcCCCceEEcCCCCEEEE
Confidence 9985 789999999999
No 22
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.58 E-value=9.3e-15 Score=119.32 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=77.3
Q ss_pred ceeEEEEecCCCCCCCCCCcEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceEE
Q psy5454 6 IKSSLLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFV 85 (129)
Q Consensus 6 ~~PhLvnln~dp~ls~~~~~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~V 85 (129)
..|+++.++. .. | ..|.|..+..+|||.+ +|||+|.++.||+.||.|...++.++|+|++|.|+|||
T Consensus 286 ~~~~~~l~~~---~~--g--~~~~l~~~~~~iGR~~------~~di~l~~~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~v 352 (388)
T 2ff4_A 286 QQAVAYLHDI---AS--G--RGYPLQAAATRIGRLH------DNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHV 352 (388)
T ss_dssp SBCCCEEEET---TT--C--CEEECCSSEEEEESST------TSSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEE
T ss_pred CCCeEEEEEC---CC--C--cEEEECCCCEEEecCC------CCeEEECCCccChhHeEEEEECCEEEEEECCCCCCeEE
Confidence 3566666552 23 4 6788999999999985 59999999999999999999999999999999999999
Q ss_pred cCEEcceeEEcCCCCEEEEec
Q psy5454 86 NGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 86 NG~~I~~~~~L~~GDrI~~~~ 106 (129)
||++|.+++.|++||.|.||.
T Consensus 353 ng~~i~~~~~L~~gd~i~~G~ 373 (388)
T 2ff4_A 353 QHERIRSAVTLNDGDHIRICD 373 (388)
T ss_dssp TTEECSSEEEECTTCEEEETT
T ss_pred CCEECCCceECCCCCEEEECC
Confidence 999998889999999999986
No 23
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.57 E-value=4.4e-15 Score=111.45 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=71.2
Q ss_pred eEEEEecCCCCCCCCCCcEEEEcCCCc--eEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcC---------------C
Q psy5454 8 SSLLLKNYNGSEITSGSPKRHRLHPNV--TEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE---------------G 70 (129)
Q Consensus 8 PhLvnln~dp~ls~~~~~~~~~L~~~~--t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~---------------g 70 (129)
.||.....+.... + ..|.|..+. .+|||.+ .|||+|.++.||+.||.|.... +
T Consensus 28 ~~l~L~~~~~~~~--~--~~i~L~~~~~~~~IGR~~------~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~ 97 (182)
T 1qu5_A 28 RFLTLKPLPDSII--Q--ESLEIQQGVNPFFIGRSE------DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLD 97 (182)
T ss_dssp CCEEECCCTTSSS--C--SCCCBTTCCSSEEESSST------TSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCC
T ss_pred cEEEEEeCCCCCc--c--eEEEEcCCCceEEECCCC------CCCEEECCCCcChHHeEEEEecCccccccccccccccc
Confidence 3444443334333 2 567788777 9999985 6999999999999999999876 8
Q ss_pred EEEEEeCCCCCceEEcCEEcce--eEEcCCCCEEEE
Q psy5454 71 IVTVTPCSREAETFVNGQRIFE--TTILQVVVAASA 104 (129)
Q Consensus 71 ~v~L~p~ss~~~t~VNG~~I~~--~~~L~~GDrI~~ 104 (129)
.|+|+|+ |.+||||||++|.. ++.|++||+|.|
T Consensus 98 ~~~l~Dl-StNGT~VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 98 DIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp EEEECCC-SSSCCEETTEECCSSEEEECCTTBCCEE
T ss_pred eEEEEEC-CcCCeEECCEEcCCCcceEcCCCCEEEE
Confidence 9999999 78999999999975 789999999999
No 24
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.57 E-value=2e-14 Score=105.92 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=67.3
Q ss_pred EEEEcCCC-----------ceEEcCCCCCCCCCcccEEEcCC-CCCCCcEEEEE-cCCEEEEEeCCCCCceEEcCEEcce
Q psy5454 26 KRHRLHPN-----------VTEVGSDRASPYGQSQSLQLFGP-NIQPRHCVIAH-TEGIVTVTPCSREAETFVNGQRIFE 92 (129)
Q Consensus 26 ~~~~L~~~-----------~t~IGr~~~~~~~~~~dI~L~g~-~I~~~Hc~I~~-~~g~v~L~p~ss~~~t~VNG~~I~~ 92 (129)
..|.|..+ ..+|||.+ .|||+|.++ .||++||.|.. .+|.|+|+|+ |.++|||||++|..
T Consensus 46 ~~~~l~~~~v~~~~~~~~~~~~IGR~~------~~di~l~d~~~vSr~Ha~I~~~~~g~~~l~Dl-S~NGT~vNg~~i~~ 118 (164)
T 1g3g_A 46 RDLSADISQVLKEKRSIKKVWTFGRNP------ACDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQKVEK 118 (164)
T ss_dssp EEECCCHHHHHHCSSSCCEEEEEESSS------SSSEECCCCTTTTSSCEEEEECSTTCEEEEEC-CSSCEEETTEEECT
T ss_pred eEEEeccccccccccccCCcEEECCCC------CCCEEeCCcCCcChhHEEEEECCCCCEEEEEC-CCCCeEECCEEcCC
Confidence 67777654 78999985 599999998 69999999999 5899999999 89999999999974
Q ss_pred --eEEcCCCCEEEEecCc
Q psy5454 93 --TTILQVVVAASAVAEK 108 (129)
Q Consensus 93 --~~~L~~GDrI~~~~~~ 108 (129)
++.|++||.|.||...
T Consensus 119 ~~~~~L~~GD~I~iG~~~ 136 (164)
T 1g3g_A 119 NSNQLLSQGDEITVGVGV 136 (164)
T ss_dssp TEEEECCTTCEEEESCSS
T ss_pred CCceEcCCCCEEEECCCC
Confidence 6999999999999864
No 25
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.55 E-value=1.5e-14 Score=102.12 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=62.9
Q ss_pred ceEEcCCCCCCCCCcccEEEcCC-CCCCCcEEEEE-cCCEEEEEeCCCCCceEEcCEEcce--eEEcCCCCEEEEecCch
Q psy5454 34 VTEVGSDRASPYGQSQSLQLFGP-NIQPRHCVIAH-TEGIVTVTPCSREAETFVNGQRIFE--TTILQVVVAASAVAEKQ 109 (129)
Q Consensus 34 ~t~IGr~~~~~~~~~~dI~L~g~-~I~~~Hc~I~~-~~g~v~L~p~ss~~~t~VNG~~I~~--~~~L~~GDrI~~~~~~~ 109 (129)
..+|||.+ .+||+|.++ .||+.||.|.. .++.|+|+|+ |.++|||||++|.. ++.|++||.|.+|....
T Consensus 37 ~~~IGR~~------~~di~l~~~~~vSr~Ha~i~~~~~g~~~l~Dl-S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~~~ 109 (127)
T 1g6g_A 37 VWTFGRNP------ACDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVGVE 109 (127)
T ss_dssp EEEEESST------TSSEECCSCTTSCSSCEEEEECTTSCEEEEEC-CSSCCEETTEECCTTCCEECCTTCEEEECTTSG
T ss_pred CEEECCCC------CCCEEeCCCCCCChhHeEEEECCCCcEEEEEC-CcCCeEECCEEcCCCCeEEcCCCCEEEECCCcc
Confidence 78999985 599999998 69999999999 5899999999 89999999999974 79999999999998764
No 26
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.55 E-value=2.2e-15 Score=108.11 Aligned_cols=89 Identities=10% Similarity=0.030 Sum_probs=74.4
Q ss_pred eEEEEecCCCCCCCCCCcEEEEcCCCc-eEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcC--CEEEEEeCCCCCceE
Q psy5454 8 SSLLLKNYNGSEITSGSPKRHRLHPNV-TEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE--GIVTVTPCSREAETF 84 (129)
Q Consensus 8 PhLvnln~dp~ls~~~~~~~~~L~~~~-t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~--g~v~L~p~ss~~~t~ 84 (129)
.+|..+.. +. . + ..|.|..+. .+|||.+ ..|||+|.++.||++||.|...+ +.|+|+|++|.++||
T Consensus 35 ~~L~v~~g-~~-~--g--~~~~l~~~~~~~IGR~~-----~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~ 103 (140)
T 2jpe_A 35 LHLDVVKG-DK-L--I--EKLIIDEKKYYLFGRNP-----DLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTF 103 (140)
T ss_dssp CBEEEESS-SS-E--E--EEECCSSCSBCCBSSCT-----TTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEE
T ss_pred EEEEEEcC-CC-c--c--eEEEeCCCCeEEecCCC-----ccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeE
Confidence 34666653 22 2 2 578888764 8999985 23899999999999999999986 899999998999999
Q ss_pred EcCEEcc--eeEEcCCCCEEEEecC
Q psy5454 85 VNGQRIF--ETTILQVVVAASAVAE 107 (129)
Q Consensus 85 VNG~~I~--~~~~L~~GDrI~~~~~ 107 (129)
|||++|. +++.|++||.|.||..
T Consensus 104 vNg~~l~~~~~~~L~~gd~i~~G~~ 128 (140)
T 2jpe_A 104 LGHIRLEPHKPQQIPIDSTVSFGAS 128 (140)
T ss_dssp SSSCEECSSSCCEECTTCCBBCSSC
T ss_pred ECCEECCCCccEECCCCCEEEECCc
Confidence 9999998 6899999999999874
No 27
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.54 E-value=4.8e-14 Score=101.80 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=66.2
Q ss_pred EEEc-CCCceEEcCCCCCCCCCcccEEEcCCC----CCCCcEEEEE-cCCEEEEEeCCCCCceEEcCEEcce--eEEcCC
Q psy5454 27 RHRL-HPNVTEVGSDRASPYGQSQSLQLFGPN----IQPRHCVIAH-TEGIVTVTPCSREAETFVNGQRIFE--TTILQV 98 (129)
Q Consensus 27 ~~~L-~~~~t~IGr~~~~~~~~~~dI~L~g~~----I~~~Hc~I~~-~~g~v~L~p~ss~~~t~VNG~~I~~--~~~L~~ 98 (129)
.|.| .....+|||.+ .+||+|.++. |+++||.|.. .++.|+|+|++|.++|||||++|.. ++.|++
T Consensus 29 ~~~l~~~~~~~IGR~~------~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg~~i~~~~~~~L~~ 102 (145)
T 2csw_A 29 WLLLEDGCEVTVGRGF------GVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQ 102 (145)
T ss_dssp BEECCTTCCEEEESST------TSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEESSCBCCBTCCEECCS
T ss_pred eEEeCCCCcEEECCCC------CCCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEECCEECCCCccEECCC
Confidence 3555 45568999985 6999999998 9999999999 5889999999899999999999975 799999
Q ss_pred CCEEEEecC
Q psy5454 99 VVAASAVAE 107 (129)
Q Consensus 99 GDrI~~~~~ 107 (129)
||.|.||..
T Consensus 103 GD~I~iG~~ 111 (145)
T 2csw_A 103 GDYIQLGVP 111 (145)
T ss_dssp SCCEEESCC
T ss_pred CCEEEECCC
Confidence 999999984
No 28
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.48 E-value=9.3e-14 Score=102.09 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=68.2
Q ss_pred EEEEcCCC-ceEEcCCCCC---------CCCCcccEEEcCCCCCCCcEEEEEcCCE----EEEEeCCCCCceEEcCEEcc
Q psy5454 26 KRHRLHPN-VTEVGSDRAS---------PYGQSQSLQLFGPNIQPRHCVIAHTEGI----VTVTPCSREAETFVNGQRIF 91 (129)
Q Consensus 26 ~~~~L~~~-~t~IGr~~~~---------~~~~~~dI~L~g~~I~~~Hc~I~~~~g~----v~L~p~ss~~~t~VNG~~I~ 91 (129)
..|.|... ..+|||.+.. +....|||+|..+.||++||.|...++. ++|+|++|.+||||||++|.
T Consensus 48 ~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~ri~ 127 (158)
T 3els_A 48 KRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIP 127 (158)
T ss_dssp EEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEECC
T ss_pred eEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEEcC
Confidence 35667655 4699998420 0112599999999999999999987554 99999999999999999997
Q ss_pred e--eEEcCCCCEEEEecCchh
Q psy5454 92 E--TTILQVVVAASAVAEKQQ 110 (129)
Q Consensus 92 ~--~~~L~~GDrI~~~~~~~~ 110 (129)
. ++.|++||+|.||.....
T Consensus 128 ~~~~~~L~~GD~I~~G~s~~~ 148 (158)
T 3els_A 128 GARYIELRSGDVLTLSEFEED 148 (158)
T ss_dssp TTCCEECCTTEEEESSSCGGG
T ss_pred CCceEEcCCCCEEEECCCCCC
Confidence 4 689999999999986543
No 29
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.43 E-value=3.8e-13 Score=102.78 Aligned_cols=84 Identities=18% Similarity=0.113 Sum_probs=66.8
Q ss_pred EEEEcCC-CceEEcCCCCCC---------CCCcccEEEcCCCCCCCcEEEEEcC--C--EEEEEeCCCCCceEEcCEEcc
Q psy5454 26 KRHRLHP-NVTEVGSDRASP---------YGQSQSLQLFGPNIQPRHCVIAHTE--G--IVTVTPCSREAETFVNGQRIF 91 (129)
Q Consensus 26 ~~~~L~~-~~t~IGr~~~~~---------~~~~~dI~L~g~~I~~~Hc~I~~~~--g--~v~L~p~ss~~~t~VNG~~I~ 91 (129)
-.|.|.. ...+|||.+..+ ....|||+|..+.||++||.|.... + .++|.|++|.+||||||++|.
T Consensus 95 ~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~rI~ 174 (205)
T 3elv_A 95 KRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIP 174 (205)
T ss_dssp EEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEECC
T ss_pred eEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEECC
Confidence 3577754 567999985200 0135999999999999999998753 2 599999999999999999997
Q ss_pred e--eEEcCCCCEEEEecCch
Q psy5454 92 E--TTILQVVVAASAVAEKQ 109 (129)
Q Consensus 92 ~--~~~L~~GDrI~~~~~~~ 109 (129)
. ++.|++||.|.||..-.
T Consensus 175 ~~~~~~L~~GD~I~fG~s~r 194 (205)
T 3elv_A 175 GARYIELRSGDVLTLSEFEE 194 (205)
T ss_dssp BTSCEECCTTCEEESSSSGG
T ss_pred CCceeECCCCCEEEECCCCC
Confidence 4 47999999999998543
No 30
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.18 E-value=8.2e-11 Score=94.97 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=63.5
Q ss_pred EEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc-----------CCEEEEEeCCCCCceEEcCEEcce-e
Q psy5454 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT-----------EGIVTVTPCSREAETFVNGQRIFE-T 93 (129)
Q Consensus 26 ~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~-----------~g~v~L~p~ss~~~t~VNG~~I~~-~ 93 (129)
..|.|.++..+|||.... ..++|.+.++.||++||.|... ...++|+|++|.+||||||++|.. +
T Consensus 14 kr~~L~pg~YlIGR~~~~---~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~~~ 90 (325)
T 3huf_A 14 KSRILFPGTYIVGRNVSD---DSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQNG 90 (325)
T ss_dssp CCEEECSEEEEEESSCCC---BTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCTTC
T ss_pred eEEEecCCeEEECCCCCc---cCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCCce
Confidence 467788888999999631 1245799999999999999875 237999999999999999999983 3
Q ss_pred EEc-CCCCEEEEec
Q psy5454 94 TIL-QVVVAASAVA 106 (129)
Q Consensus 94 ~~L-~~GDrI~~~~ 106 (129)
..| .+||+|.+|+
T Consensus 91 ~~L~~dgd~I~fG~ 104 (325)
T 3huf_A 91 DSYKEKDLKIQLGK 104 (325)
T ss_dssp EEECSSEEEEEETT
T ss_pred eeecCCCCEEEecC
Confidence 344 5899999987
No 31
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.05 E-value=3.6e-10 Score=80.08 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=65.5
Q ss_pred EEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcCCEEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEe
Q psy5454 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQVVVAASAV 105 (129)
Q Consensus 26 ~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~g~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~ 105 (129)
....|..+..+||+.+ ..|||+|.+++|+++||.+...++.|+|+. +.+++|+||+++.+...|+.|+.+.+|
T Consensus 17 ~~l~L~~~~~~IGs~~-----~~~DLvL~D~~Vs~~H~~L~~~~~g~~L~~--s~ngt~vdG~~v~~~~~L~~g~~l~lG 89 (123)
T 4a0e_A 17 VEVELPHGRCVFGSDP-----LQSDIVLSDSEIAPVHLVLMVDEEGIRLTD--SAEPLLQEGLPVPLGTLLRAGSCLEVG 89 (123)
T ss_dssp CEEEECSEEEEEESCT-----TTCSEECCCTTSCSSCEEEEEETTEEEEEE--ESSCCEETTEECCTTCBCCTTSCEEET
T ss_pred cEEEcCCCcEEECCCC-----CCCCEEEeCCCccceeEEEEECCCeEEEEe--ccCCEEECCEEcccccccCCCCEEEEc
Confidence 5677888899999984 259999999999999999999999999983 578999999999877799999999876
Q ss_pred c
Q psy5454 106 A 106 (129)
Q Consensus 106 ~ 106 (129)
.
T Consensus 90 ~ 90 (123)
T 4a0e_A 90 F 90 (123)
T ss_dssp T
T ss_pred c
Confidence 5
No 32
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.02 E-value=2.8e-09 Score=73.26 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=61.5
Q ss_pred EEEEcCCCce-EEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc--CCEEEEEeCCCCCceEEcCEEcc--eeEEcCCCC
Q psy5454 26 KRHRLHPNVT-EVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT--EGIVTVTPCSREAETFVNGQRIF--ETTILQVVV 100 (129)
Q Consensus 26 ~~~~L~~~~t-~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~--~g~v~L~p~ss~~~t~VNG~~I~--~~~~L~~GD 100 (129)
-.+.|..+++ +|||++ ...+.+-.+|++||.+... .|.|++.+++ .++++|||+++. +...|++||
T Consensus 15 ~~I~L~~g~~v~iGR~p--------~t~I~DkrcSR~h~~L~~~~~~g~v~vk~lg-~Np~~vng~~l~k~~~~~L~~GD 85 (102)
T 3kt9_A 15 QRIRLPHLEAVVIGRGP--------ETKITDKKCSRQQVQLKAECNKGYVKVKQVG-VNPTSIDSVVIGKDQEVKLQPGQ 85 (102)
T ss_dssp CEEECCBTCEEEECSST--------TTCCCCTTSCSSCEEEEEETTTTEEEEEECS-SSCCEETTEECCBTCEEEECTTC
T ss_pred CcEEcCCCCcEEeccCC--------ccccccCcccCcceEEEEecCCCEEEEEECc-CCCCeECCEEcCCCCeEEeCCCC
Confidence 4577888887 479985 2345789999999999886 5799999995 789999999997 668999999
Q ss_pred EEEEecCc
Q psy5454 101 AASAVAEK 108 (129)
Q Consensus 101 rI~~~~~~ 108 (129)
+|.+...+
T Consensus 86 ~l~Ll~~~ 93 (102)
T 3kt9_A 86 VLHMVNEL 93 (102)
T ss_dssp CEEEETTE
T ss_pred EEEEccCC
Confidence 99987653
No 33
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.93 E-value=1.9e-09 Score=73.89 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=51.7
Q ss_pred cCCCc-eEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc-CCEEEEEeCCCCCc-eEEcCEEcceeEEcCCCCE
Q psy5454 30 LHPNV-TEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT-EGIVTVTPCSREAE-TFVNGQRIFETTILQVVVA 101 (129)
Q Consensus 30 L~~~~-t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~-~g~v~L~p~ss~~~-t~VNG~~I~~~~~L~~GDr 101 (129)
|.+++ ..|||.+ .++++|.++.|++.||.|... .|.+.+. |.+| |||||+++ +++.|..||.
T Consensus 17 l~~~~~~rIGR~~------~~~l~LddpsVs~~HAti~~~~~G~~~l~---S~nGtVFVNGqrv-~~~~I~~gDt 81 (102)
T 3uv0_A 17 LKADTIYRIGRQK------GLEISIADESMELAHATACILRRGVVRLA---ALVGKIFVNDQEE-TVVDIGMENA 81 (102)
T ss_dssp CCTTCCEEEESST------TSTEECCCTTSCTTCEEEEEEETTEEEEE---ESSSCEEETTEEE-SEEEECGGGC
T ss_pred eecCcEEEEcCCC------CCcEEECCcccccceEEEEecCCceEEEE---eccCcEEECCEEe-eeEEccCCcc
Confidence 44444 5999986 589999999999999999885 5666665 4566 79999999 8999999999
No 34
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.90 E-value=2.3e-09 Score=86.99 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=65.5
Q ss_pred cEEEEcCCCceEEcCCCCCCCCCcccEEEcCCCC---------CCCcEEEEEcC---C--EEEEEeCCCCCceEEcCEEc
Q psy5454 25 PKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNI---------QPRHCVIAHTE---G--IVTVTPCSREAETFVNGQRI 90 (129)
Q Consensus 25 ~~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I---------~~~Hc~I~~~~---g--~v~L~p~ss~~~t~VNG~~I 90 (129)
...+.|..+..+|||.. +|||++.++.| |++||.|.... + .++|++. |.++|||||+.+
T Consensus 20 ~~~~~l~~~~~~iGR~~------~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~-S~nGt~vn~~~~ 92 (419)
T 3i6u_A 20 FANLECVNDNYWFGRDK------SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDH-SGNGTFVNTELV 92 (419)
T ss_dssp SCCEEECSSEEEEESST------TSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEEC-CSSCEEETTEEC
T ss_pred CCceEecCCCEEecCCC------ccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEEC-CcCCceECcccc
Confidence 34577888999999985 69999999976 99999997642 2 4999996 789999999999
Q ss_pred c--eeEEcCCCCEEEEecCch
Q psy5454 91 F--ETTILQVVVAASAVAEKQ 109 (129)
Q Consensus 91 ~--~~~~L~~GDrI~~~~~~~ 109 (129)
. .+..|.+||.+.+|+.+.
T Consensus 93 ~~~~~~~l~~~d~i~~~~~~~ 113 (419)
T 3i6u_A 93 GKGKRRPLNNNSEIALSLSRN 113 (419)
T ss_dssp CTTCEEECCTTEEEEESSTTC
T ss_pred cCCCcccCCCCCEeeeecccc
Confidence 6 667899999999998764
No 35
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.81 E-value=1.7e-08 Score=70.26 Aligned_cols=72 Identities=13% Similarity=-0.017 Sum_probs=59.2
Q ss_pred EEEc--CCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEE--cCCEEEEEeCCCCCceEEcCEEcc--eeEEcCCCC
Q psy5454 27 RHRL--HPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAH--TEGIVTVTPCSREAETFVNGQRIF--ETTILQVVV 100 (129)
Q Consensus 27 ~~~L--~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~--~~g~v~L~p~ss~~~t~VNG~~I~--~~~~L~~GD 100 (129)
.+.| ..+.++|||.+ ...+.+..+|++||.+.. .++.+++.+++ .+++++||+++. +...|++||
T Consensus 21 ~I~Lp~~~g~~viGR~p--------~t~I~DkrcSR~hv~L~ad~~~~~v~vk~lG-~Np~~vng~~l~k~~~~~L~~GD 91 (110)
T 2brf_A 21 PIFLPSDGQALVLGRGP--------LTQVTDRKCSRTQVELVADPETRTVAVKQLG-VNPSTTGTQELKPGLEGSLGVGD 91 (110)
T ss_dssp CEECCSTTCCEEECSBT--------TTTBCCTTSCSSCEEEEEETTTTEEEEEECS-SSCCEEC-CBCCTTCEEEEETTC
T ss_pred cEEeccCCCCEEEcCCC--------CcccccccceeeeEEEEEecCCCEEEEEEcc-cCCcEECCEEcCCCCEEEecCCC
Confidence 3556 36899999985 344688899999999986 36899999995 679999999997 778999999
Q ss_pred EEEEecC
Q psy5454 101 AASAVAE 107 (129)
Q Consensus 101 rI~~~~~ 107 (129)
+|.+...
T Consensus 92 ~leLl~g 98 (110)
T 2brf_A 92 TLYLVNG 98 (110)
T ss_dssp EEEEETT
T ss_pred EEEEccC
Confidence 9998765
No 36
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.71 E-value=1.2e-08 Score=79.03 Aligned_cols=71 Identities=7% Similarity=-0.024 Sum_probs=57.4
Q ss_pred EEEEcCCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc--C--CEEEEEeCCCCCc-eEEcCEEcceeEEcC-CC
Q psy5454 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT--E--GIVTVTPCSREAE-TFVNGQRIFETTILQ-VV 99 (129)
Q Consensus 26 ~~~~L~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~--~--g~v~L~p~ss~~~-t~VNG~~I~~~~~L~-~G 99 (129)
.+|.+.....+|||.+ .+||+|.++ .|+.+... + +.|+|++++|+++ +||||++|.+++.|+ .|
T Consensus 85 ~~y~~~~~~itIG~~~------~~dI~l~~~----~~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~~~~L~~~G 154 (238)
T 1wv3_A 85 FAYPSIQDTMTIGPNA------YDDMVIQSL----MNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQLTNKAYIG 154 (238)
T ss_dssp EECCSSCSEEEEESST------TSSEECTTC----SSCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCSSEEEEETT
T ss_pred EEEecCCceEEEeCCC------CCeEEeCCC----eeEEEEecccCcCCcEEEEEccCCCCCEEECCEEeccceeccCCc
Confidence 3455555588999975 699999988 26777776 3 5899999987677 599999999999999 99
Q ss_pred CEEEEec
Q psy5454 100 VAASAVA 106 (129)
Q Consensus 100 DrI~~~~ 106 (129)
|.|.++.
T Consensus 155 D~I~ig~ 161 (238)
T 1wv3_A 155 DHIYVEG 161 (238)
T ss_dssp CEEEETT
T ss_pred CEEEECC
Confidence 9998754
No 37
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.64 E-value=2.7e-07 Score=66.73 Aligned_cols=70 Identities=11% Similarity=-0.008 Sum_probs=58.9
Q ss_pred EEc--CCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc--CCEEEEEeCCCCCceEEcCEEcc--eeEEcCCCCE
Q psy5454 28 HRL--HPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT--EGIVTVTPCSREAETFVNGQRIF--ETTILQVVVA 101 (129)
Q Consensus 28 ~~L--~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~--~g~v~L~p~ss~~~t~VNG~~I~--~~~~L~~GDr 101 (129)
+.| ..+.++|||.+ ...+.+..+|++||.+... .+.+++.+++ .++++|||.++. ....|+|||+
T Consensus 22 I~Lp~~~g~vvIGRgP--------et~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG-~NP~~vng~~L~k~~~~~L~~GD~ 92 (143)
T 1yj5_C 22 IFLPSDGQALVLGRGP--------LTQVTDRKCSRNQVELIADPESRTVAVKQLG-VNPSTVGVHELKPGLSGSLSLGDV 92 (143)
T ss_dssp EECCTTTCEEEECSBT--------TTTBCCSSSCSSCEEEEEETTTTEEEEEECS-SSCCEETTEECCTTCEEEECTTCE
T ss_pred EEeccCCCCEEEcCCC--------ccccccccccceeEEEEEecCCCeEEEEEcc-cCCcEECCEEecCCCEEEecCCCE
Confidence 556 36899999984 4457888999999999864 6899999995 679999999997 7789999999
Q ss_pred EEEec
Q psy5454 102 ASAVA 106 (129)
Q Consensus 102 I~~~~ 106 (129)
|.+..
T Consensus 93 LeLl~ 97 (143)
T 1yj5_C 93 LYLVN 97 (143)
T ss_dssp EESSS
T ss_pred EEEec
Confidence 98644
No 38
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.48 E-value=6.6e-08 Score=68.07 Aligned_cols=68 Identities=12% Similarity=0.002 Sum_probs=57.6
Q ss_pred CCCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEc--CCEEEEEeCCCCCceEEcCEEcc--eeEEcCCCCEEEEec
Q psy5454 31 HPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT--EGIVTVTPCSREAETFVNGQRIF--ETTILQVVVAASAVA 106 (129)
Q Consensus 31 ~~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~--~g~v~L~p~ss~~~t~VNG~~I~--~~~~L~~GDrI~~~~ 106 (129)
..+.++|||.+ ...+.+..+|++||.+..+ .+.+++.+++ .++++|||+++. ....|+|||+|.+..
T Consensus 34 ~~g~~viGRgp--------~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG-~NP~~vng~~l~k~~~~~L~~GD~l~Ll~ 104 (119)
T 1ujx_A 34 DGQALVLGRGP--------LTQVTDRKCSRNQVELIADPESRTVAVKQLG-VNPSTVGVQELKPGLSGSLSLGDVLYLVN 104 (119)
T ss_dssp TSCCEEESBBT--------TTTBCCTTSCTTSEEEEEETTTTEEEEEECS-SSCCBSSSSBCCTTCEEEEETTCCCBCBT
T ss_pred CCCCEEEcCCC--------CcccccccccceeEEEEEecCCCEEEEEEcc-cCCcEECCEEecCCCEEEecCCCEEEEec
Confidence 36889999984 4457889999999999864 6899999995 579999999997 778999999998765
Q ss_pred C
Q psy5454 107 E 107 (129)
Q Consensus 107 ~ 107 (129)
.
T Consensus 105 g 105 (119)
T 1ujx_A 105 G 105 (119)
T ss_dssp T
T ss_pred C
Confidence 4
No 39
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=91.82 E-value=0.1 Score=32.35 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=22.3
Q ss_pred ceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 82 ETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 82 ~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
.+.|||+.+...+.|++||+|.+-.
T Consensus 48 ~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCEECCCCCCcCCCCEEEEEC
Confidence 7999999998778999999998854
No 40
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=91.76 E-value=0.051 Score=36.41 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=24.0
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
...+.|||+.+...+.|++||||.|-+
T Consensus 58 ~~~V~Vng~~v~~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 58 TNKIGIFSRPIKLTDVLKEGDRIEIYR 84 (97)
T ss_dssp TSEEEEEECSCCTTCBCCTTCEEEECC
T ss_pred ccEEEEcCEECCCCccCCCCCEEEEEe
Confidence 467999999999888999999999865
No 41
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=90.63 E-value=0.16 Score=32.40 Aligned_cols=27 Identities=7% Similarity=-0.052 Sum_probs=23.5
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
...++|||+.+...+.|++||.|.|-.
T Consensus 58 ~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 58 HINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp TSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred cEEEEECCEECCCCcccCCCCEEEEEC
Confidence 368999999999778999999998854
No 42
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=90.30 E-value=0.16 Score=30.75 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=21.7
Q ss_pred CceEEcCEEccee----EEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIFET----TILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~~~----~~L~~GDrI~~~~ 106 (129)
..+.|||+.+... +.|++||+|.|..
T Consensus 30 v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 30 VAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 4689999999744 8999999998864
No 43
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=89.43 E-value=0.22 Score=30.98 Aligned_cols=26 Identities=12% Similarity=-0.176 Sum_probs=22.6
Q ss_pred CceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
..+.|||+.+...+.|++||.|.|-.
T Consensus 51 ~~v~vN~~~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 51 LLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp CEEEETTEECCTTCBCCTTCEEEEEC
T ss_pred EEEEECCEECCCCCCCCCCCEEEEeC
Confidence 46999999998778999999998854
No 44
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=88.15 E-value=0.098 Score=32.97 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
...+.|||+.+...+.|++||+|.|-.
T Consensus 46 ~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 46 SAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp SSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred CEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 457999999999889999999997643
No 45
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=88.10 E-value=0.16 Score=30.89 Aligned_cols=27 Identities=19% Similarity=-0.015 Sum_probs=22.3
Q ss_pred CCceEEcCEEcce----eEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFE----TTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~----~~~L~~GDrI~~~~ 106 (129)
.-.+.|||+.+.. .+.|++||+|.|-.
T Consensus 31 ~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 31 GAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp SEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred CEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 3469999999975 58999999998754
No 46
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.07 E-value=0.21 Score=32.67 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=23.1
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
...++|||+.+...+.|++||+|.|-.
T Consensus 67 ~v~v~VNg~~v~~~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 67 DVNIAVNGRYVSWDEELKDGDVVGVFP 93 (98)
T ss_dssp SBEEEETTBCCCTTCBCCTTCEEEEES
T ss_pred cEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 356999999998778999999998854
No 47
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=87.61 E-value=0.36 Score=31.00 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=22.6
Q ss_pred CceEEcCEEcceeEEcCCCCEEEEecC
Q psy5454 81 AETFVNGQRIFETTILQVVVAASAVAE 107 (129)
Q Consensus 81 ~~t~VNG~~I~~~~~L~~GDrI~~~~~ 107 (129)
+.++|||+.+.....|+.||.|.+.-.
T Consensus 26 G~V~VNg~~~~~~~~v~~gd~I~v~~~ 52 (92)
T 2k6p_A 26 GAVWLNGSCAKASKEVKAGDTISLHYL 52 (92)
T ss_dssp TCCEETTEECCTTCBCCTTCEEEECCS
T ss_pred CcEEECCEEcCCCCCcCCCCEEEEEeC
Confidence 579999999876678999999988543
No 48
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=87.48 E-value=0.34 Score=29.86 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=22.2
Q ss_pred CceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
.-+.|||+.+.....|++||+|.+-.
T Consensus 40 v~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 40 VVVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEEEETTEECCTTSBCCTTCEEEEEE
T ss_pred EEEEECCEECCCcccCCCCCEEEEEe
Confidence 45889999998777999999998854
No 49
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=86.98 E-value=0.3 Score=30.68 Aligned_cols=27 Identities=7% Similarity=-0.090 Sum_probs=22.5
Q ss_pred CCceEEcCEEcce----eEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFE----TTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~----~~~L~~GDrI~~~~ 106 (129)
.-.+.|||+-|.. .+.|+.||+|.|.+
T Consensus 30 ~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 30 HFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp SCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred cEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 4569999999984 47999999999854
No 50
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=86.84 E-value=0.31 Score=31.01 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=22.8
Q ss_pred CCceEEcCEEcce----eEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFE----TTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~----~~~L~~GDrI~~~~ 106 (129)
...+.|||+-|.. .+.|+.||+|.|.+
T Consensus 34 ~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 34 YVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp TCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred cEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 4569999999985 48999999999865
No 51
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=85.94 E-value=0.41 Score=30.58 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=23.7
Q ss_pred ceEEcCEEcceeEEcCCCCEEEEecCchh
Q psy5454 82 ETFVNGQRIFETTILQVVVAASAVAEKQQ 110 (129)
Q Consensus 82 ~t~VNG~~I~~~~~L~~GDrI~~~~~~~~ 110 (129)
+..|||+.+.-.+.|++||.|.|.+.+.-
T Consensus 43 ~AkVNG~~v~L~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 43 GAKVDGRIVPIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp EEEETTEEECTTCBCCTTCBEEEEECC--
T ss_pred EEEECCEEcCCCcccCCCCEEEEEccCcc
Confidence 46889999987789999999999886653
No 52
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=85.94 E-value=0.44 Score=31.05 Aligned_cols=27 Identities=15% Similarity=-0.205 Sum_probs=22.4
Q ss_pred CCceEEcCEEcce----eEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFE----TTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~----~~~L~~GDrI~~~~ 106 (129)
...+.|||+.|.. .+.|++||+|.|..
T Consensus 52 ~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 52 IVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp CCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 4569999999974 57899999998864
No 53
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=84.72 E-value=0.62 Score=29.86 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=22.0
Q ss_pred CceEEcCEEcc----eeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIF----ETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~----~~~~L~~GDrI~~~~ 106 (129)
..++|||+.+. ..+.|++||.|.|-.
T Consensus 59 ~~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 59 VNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 57999999997 368999999998754
No 54
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=83.20 E-value=0.81 Score=31.83 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.6
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
.+.+.|||+.+.....+..||.|.|..
T Consensus 33 ~G~V~VNG~~vk~s~~V~~GD~I~I~~ 59 (133)
T 1dm9_A 33 GGKVHYNGQRSKPSKIVELNATLTLRQ 59 (133)
T ss_dssp TTCEEETTEECCTTCBCCTTCEEEEEE
T ss_pred CCcEEECCEEcCCCCEeCCCCEEEEEe
Confidence 468999999987667899999998754
No 55
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=81.86 E-value=0.56 Score=30.77 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.6
Q ss_pred CceEEcCEEc----ceeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRI----FETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I----~~~~~L~~GDrI~~~~ 106 (129)
..++|||+.+ ...+.|++||.|.|..
T Consensus 65 ~~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 65 INILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp CEEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred cEEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 3799999988 3567999999998854
No 56
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=81.13 E-value=0.82 Score=28.80 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=22.4
Q ss_pred CCceEEcCEEcc----eeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIF----ETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~----~~~~L~~GDrI~~~~ 106 (129)
...+.|||+.+. ..+.|++||.|.|-.
T Consensus 55 ~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 55 NVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp TCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred ceEEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 457999999986 468999999998854
No 57
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=80.52 E-value=0.93 Score=27.94 Aligned_cols=27 Identities=19% Similarity=-0.043 Sum_probs=22.0
Q ss_pred CCceEEcCEEcc-eeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIF-ETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~-~~~~L~~GDrI~~~~ 106 (129)
...+.|||+.|. ..+.|++||.|.+-.
T Consensus 42 ~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 42 VCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp TCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred ccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 468999999954 568999999998854
No 58
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=77.77 E-value=1.4 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCceEEcCEEcce----eEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFE----TTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~----~~~L~~GDrI~~~~ 106 (129)
...++|||+.+.. .+.|++||.|.|-.
T Consensus 52 ~v~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 52 RVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp TCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred cEEEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 4579999999986 78999999998743
No 59
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=77.54 E-value=1.6 Score=28.47 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=21.0
Q ss_pred CceEEcCEEcc----eeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIF----ETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~----~~~~L~~GDrI~~~~ 106 (129)
..++|||+.+. ..+.|++||.|.|-.
T Consensus 65 ~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 65 IITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred eEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 46999999874 457999999998743
No 60
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=75.32 E-value=0.72 Score=30.67 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=23.3
Q ss_pred eEEcCEEcceeEEcCCCCEEEEecCchh
Q psy5454 83 TFVNGQRIFETTILQVVVAASAVAEKQQ 110 (129)
Q Consensus 83 t~VNG~~I~~~~~L~~GDrI~~~~~~~~ 110 (129)
+.+||++|.....|++||.|.|.+.+..
T Consensus 63 aK~~~qrVgldh~L~d~DVV~Iv~~~~~ 90 (93)
T 2eki_A 63 VKHNPQKVGKDHTLEDEDVIQIVKKSGP 90 (93)
T ss_dssp SSSSSEEECSSCCCCSSEEECEEECCSC
T ss_pred ccCCCEECCCCcEecCCCEEEEEeCCCC
Confidence 4459999998899999999999876544
No 61
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=74.39 E-value=1 Score=30.46 Aligned_cols=26 Identities=12% Similarity=-0.046 Sum_probs=21.3
Q ss_pred CceEEcCEEcc----eeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIF----ETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~----~~~~L~~GDrI~~~~ 106 (129)
--++|||+.+. ..+.|++||.|.|-+
T Consensus 68 IlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 68 ILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred eEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 45999999884 558999999998843
No 62
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=72.41 E-value=2 Score=25.81 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=22.6
Q ss_pred ceEEcCEEcceeEEcCCCCEEEEecCc
Q psy5454 82 ETFVNGQRIFETTILQVVVAASAVAEK 108 (129)
Q Consensus 82 ~t~VNG~~I~~~~~L~~GDrI~~~~~~ 108 (129)
.+.|||+.+.-.+.|..||.|.+.+..
T Consensus 38 aa~vNg~lvdl~~~L~~~~~Veivt~~ 64 (73)
T 2kmm_A 38 GAKVNHKLVPLSYVLNSGDQVEVLSSK 64 (73)
T ss_dssp EEEETTEECCTTCBCCSSSBEEEEECC
T ss_pred EEEECCEEeCCCcCcCCCCEEEEEECC
Confidence 457899999877899999999987644
No 63
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=71.53 E-value=0.97 Score=30.72 Aligned_cols=26 Identities=12% Similarity=-0.098 Sum_probs=21.2
Q ss_pred CceEEcCEEcc----eeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIF----ETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~----~~~~L~~GDrI~~~~ 106 (129)
--++|||+.+. ..+.|++||.|.|..
T Consensus 74 i~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 74 ILVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp EEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred eEEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 56999999764 458999999998843
No 64
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=71.08 E-value=0.92 Score=28.46 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=20.0
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
..-+.|||+.+.....+. ||+|.+..
T Consensus 36 ~VvV~vNG~~v~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 36 EVTVLVDGRPVPEDQSVE-VDRVKVLR 61 (74)
T ss_dssp CCCEECCCCCCCTTSSSC-CCCEEECS
T ss_pred eEEEEECCEECCHHHCCC-CCEEEEEE
Confidence 347999999998655564 99998843
No 65
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=70.98 E-value=3.1 Score=29.60 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=22.8
Q ss_pred CCceEEcCEEcc-eeEEcCCCCEEEEecC
Q psy5454 80 EAETFVNGQRIF-ETTILQVVVAASAVAE 107 (129)
Q Consensus 80 ~~~t~VNG~~I~-~~~~L~~GDrI~~~~~ 107 (129)
.+.+.|||+.+. ....+..||.|.+..+
T Consensus 75 ~G~V~VNG~~v~~ps~~V~~gD~I~V~~~ 103 (159)
T 1c05_A 75 HGHILVDGSRVNIPSYRVKPGQTIAVREK 103 (159)
T ss_dssp TTCEEETTEECCCSSCBCCTTCEEEECGG
T ss_pred CCCEEECCEEeCcCCcEeCCCCEEEEeCc
Confidence 367999999995 5578999999998543
No 66
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=68.05 E-value=1 Score=28.10 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=20.7
Q ss_pred CceEEcCEEcc-eeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIF-ETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~-~~~~L~~GDrI~~~~ 106 (129)
+.++|||+.+. ....+..||.|.+.-
T Consensus 46 G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 46 GQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp HHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred CEEEECCEEecCCCCCCCCCCEEEECC
Confidence 58999999985 446789999887753
No 67
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=67.71 E-value=7.2 Score=31.11 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=26.1
Q ss_pred CCCCceEEcCEEcc--eeEEcCCCCEEEEecCc
Q psy5454 78 SREAETFVNGQRIF--ETTILQVVVAASAVAEK 108 (129)
Q Consensus 78 ss~~~t~VNG~~I~--~~~~L~~GDrI~~~~~~ 108 (129)
+......|||+++. .+..++.||++.|+..+
T Consensus 78 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~ 110 (318)
T 3mml_A 78 GADTDPAVNGIPFGTNSIHHVHDGQVISLGAPH 110 (318)
T ss_dssp ESCCCCEETTEECCTTSCEEECTTCEEECCCCS
T ss_pred CCCCcceECCEEcCCCeEEEECCCCEEEeCCCC
Confidence 34678899999997 77999999999998654
No 68
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=66.14 E-value=3.4 Score=30.63 Aligned_cols=26 Identities=12% Similarity=-0.032 Sum_probs=21.9
Q ss_pred CCceEEcCEEcc-eeEEcCCCCEEEEe
Q psy5454 80 EAETFVNGQRIF-ETTILQVVVAASAV 105 (129)
Q Consensus 80 ~~~t~VNG~~I~-~~~~L~~GDrI~~~ 105 (129)
.+.++|||+++. ....++.||.|.+.
T Consensus 27 ~G~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 27 GNRVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp TTCEEETTEECCCTTCEECTTCCEEET
T ss_pred cCeEEECCEEeCCCCCCCCCCCEEEEe
Confidence 467999999997 56789999999885
No 69
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=65.13 E-value=6.6 Score=29.32 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=21.5
Q ss_pred CCceEEcCEEcc-eeEEcCCCCEEEEe
Q psy5454 80 EAETFVNGQRIF-ETTILQVVVAASAV 105 (129)
Q Consensus 80 ~~~t~VNG~~I~-~~~~L~~GDrI~~~ 105 (129)
.+.++|||+++. ....+..||.|.+.
T Consensus 26 ~G~V~VNG~~v~~~~~~v~~gD~I~v~ 52 (243)
T 1vio_A 26 QSAVKINGEIVKSGSVQISQEDEIYFE 52 (243)
T ss_dssp TTCEEETTEECCCTTCEECTTSCEEET
T ss_pred cCcEEECCEEeCCCCCCcCCCCEEEEe
Confidence 467999999995 55789999988874
No 70
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=63.41 E-value=4.8 Score=29.99 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=22.9
Q ss_pred CCceEEcCEEcc-eeEEcCCCCEEEEecC
Q psy5454 80 EAETFVNGQRIF-ETTILQVVVAASAVAE 107 (129)
Q Consensus 80 ~~~t~VNG~~I~-~~~~L~~GDrI~~~~~ 107 (129)
.+.+.|||+.+. ....+..||.|.+.-+
T Consensus 123 ~G~V~VNG~~v~~ps~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 123 HGHITVNGRRVDLPSYRVRPGDEIAVAEK 151 (209)
T ss_dssp TTCEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred CCCEEECCEEeCcCCcCcCCCCEEEEcCc
Confidence 367999999996 5578999999998543
No 71
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=60.71 E-value=4.8 Score=31.36 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.5
Q ss_pred CCceEEcCEEcceeEEcCCCCEEEEec
Q psy5454 80 EAETFVNGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 80 ~~~t~VNG~~I~~~~~L~~GDrI~~~~ 106 (129)
.+.++|||+.+.....+..||.|.+--
T Consensus 30 ~G~V~VNG~~v~~~~~V~~gD~I~v~~ 56 (290)
T 3dh3_A 30 QGNVFLNGKRATIGDQVKPGDVVKVNG 56 (290)
T ss_dssp TTCEEETTEECCTTCEECTTCCEEETT
T ss_pred CCCEEECCEEccCCcCcCCCCEEEecc
Confidence 468999999997667899999998854
No 72
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=58.60 E-value=6 Score=29.48 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=23.1
Q ss_pred CCceEEcCEEcc-eeEEcCCCCEEEEecCc
Q psy5454 80 EAETFVNGQRIF-ETTILQVVVAASAVAEK 108 (129)
Q Consensus 80 ~~~t~VNG~~I~-~~~~L~~GDrI~~~~~~ 108 (129)
.+.+.|||+.+. ....+..||.|.+.-+.
T Consensus 113 ~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~ 142 (201)
T 3bbn_D 113 HRHILVNGRIVDIPSYRCKPQDTIMARDEQ 142 (201)
T ss_dssp TTCEEETTEECCCTTCBCCTTEEEEECSST
T ss_pred CCcEEeCCEEEeecceecCCCCEEEEcccc
Confidence 368999999996 45689999999986433
No 73
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=51.15 E-value=4.4 Score=31.70 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCceEEcCEEc-ceeEEcCCCCEEEEecC
Q psy5454 80 EAETFVNGQRI-FETTILQVVVAASAVAE 107 (129)
Q Consensus 80 ~~~t~VNG~~I-~~~~~L~~GDrI~~~~~ 107 (129)
.+.++|||+++ .....++.||.|.+..+
T Consensus 41 ~G~V~VNG~~v~~~~~~v~~gD~I~v~~~ 69 (325)
T 1v9f_A 41 DQRVLVNGKVCDKPKEKVLGGEQVAINAE 69 (325)
T ss_dssp -----------------------------
T ss_pred CCCEEECCEEccCCCCEeCCCCEEEEecc
Confidence 45799999984 45678999999988644
No 74
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=49.56 E-value=32 Score=28.91 Aligned_cols=31 Identities=6% Similarity=-0.017 Sum_probs=25.9
Q ss_pred CCCCceEEcCEEcc--eeEEcCCCCEEEEecCc
Q psy5454 78 SREAETFVNGQRIF--ETTILQVVVAASAVAEK 108 (129)
Q Consensus 78 ss~~~t~VNG~~I~--~~~~L~~GDrI~~~~~~ 108 (129)
+......|||+++. .+..++.||++.|+..+
T Consensus 295 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~ 327 (494)
T 3oep_A 295 GYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRG 327 (494)
T ss_dssp ESSEEEEETTEEECSSEEEEECTTCEEEEEECS
T ss_pred CCCCcceECCEEccCCeEEEECCCCEEEeCCCC
Confidence 34678889999996 78899999999998754
No 75
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=48.60 E-value=22 Score=26.61 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=29.4
Q ss_pred EEEcC-CCceEEcCCCCCCCCCcccEEEcCCCCCCCcEEEEEcC-CEEEE
Q psy5454 27 RHRLH-PNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE-GIVTV 74 (129)
Q Consensus 27 ~~~L~-~~~t~IGr~~~~~~~~~~dI~L~g~~I~~~Hc~I~~~~-g~v~L 74 (129)
.+.|. ....+||+.. +++|.|+.+ ..|..|...+ +.|.+
T Consensus 14 ~~~L~~~~~~tiG~~~------~~~itl~~~---~~~i~l~~~~~~~~~v 54 (238)
T 1wv3_A 14 MLNLRDGKTYTISEDE------RADITLKSL---GEVIHLEQNNQGTWQA 54 (238)
T ss_dssp EEECCTTCCEEEESCT------TSSEECTTC---CCCEEEEECTTSCEEE
T ss_pred EEecCCCcEEEECCCc------cceEEecCC---CccEEEEEccCCeEEE
Confidence 34455 4567999874 799999877 7888888876 77776
No 76
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=47.17 E-value=13 Score=24.79 Aligned_cols=26 Identities=12% Similarity=-0.093 Sum_probs=20.6
Q ss_pred CceEEcCEEcc---eeEEcCCCCEEEEec
Q psy5454 81 AETFVNGQRIF---ETTILQVVVAASAVA 106 (129)
Q Consensus 81 ~~t~VNG~~I~---~~~~L~~GDrI~~~~ 106 (129)
....+||+++. ....|++||.|.+..
T Consensus 69 W~~~vng~~~~~Ga~~~~v~dGD~i~~~~ 97 (101)
T 3u7z_A 69 WCITKGGEQVNTSADQTPVSDGDAFELTL 97 (101)
T ss_dssp EEEEETTEECCSCGGGCBCCTTCEEEEEE
T ss_pred EEEEECCEEhhhchhheEecCCCEEEEEE
Confidence 35578999987 557899999998753
No 77
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=41.22 E-value=11 Score=22.91 Aligned_cols=20 Identities=5% Similarity=-0.070 Sum_probs=14.9
Q ss_pred eeEEcCCCCEEEEecCchhh
Q psy5454 92 ETTILQVVVAASAVAEKQQQ 111 (129)
Q Consensus 92 ~~~~L~~GDrI~~~~~~~~~ 111 (129)
..+.|+.||+|.+....++-
T Consensus 57 ~~~~l~~GD~l~v~g~~~~~ 76 (86)
T 3jxo_A 57 GDTEILSGDKLYVIVSAEAK 76 (86)
T ss_dssp TTCBCCTTCEEEEEEETTTH
T ss_pred CCCEECCCCEEEEEECHHHH
Confidence 34789999999887665543
No 78
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=39.40 E-value=12 Score=25.18 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=36.6
Q ss_pred cEEEEEc-CC----EEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEec-----CchhhhccccccCC
Q psy5454 62 HCVIAHT-EG----IVTVTPCSREAETFVNGQRIFETTILQVVVAASAVA-----EKQQQSDNLKEIDN 120 (129)
Q Consensus 62 Hc~I~~~-~g----~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~-----~~~~~~~~~~~~~~ 120 (129)
...|.+- +| .+.|.-.+ .+-+.+||... ..-+.||+|.+.+ +.+.+...|+++.-
T Consensus 19 ~V~I~NvnNG~Rf~TYvI~GeG-SG~I~lNGAAA---rl~~~GD~vII~aY~~~~~~e~~~~~P~vv~v 83 (102)
T 3plx_B 19 KVQVVNVNNGARFETYTIATQE-EGVVCLNGAAA---RLAEVGDKVIIMSYADFNEEEAKTFKPKVVFV 83 (102)
T ss_dssp EEEEEETTTCCEEEEECEEESS-TTCEEEEGGGG---GGCCTTCEEEEEEEEEEEHHHHHHCCCEEEEE
T ss_pred EEEEEECCCCcEEEEEEEEcCC-CCEEEeCcHHH---hccCCCCEEEEEEcccCCHHHHhcCCCEEEEE
Confidence 3455553 33 45555443 45799999875 4678999999866 55666778887543
No 79
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=39.31 E-value=15 Score=30.03 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=31.1
Q ss_pred eEEcCEEcc--eeEEcCCCCEEEEecCchhhhccccccCCC----ccEEeec
Q psy5454 83 TFVNGQRIF--ETTILQVVVAASAVAEKQQQSDNLKEIDND----TTILMIG 128 (129)
Q Consensus 83 t~VNG~~I~--~~~~L~~GDrI~~~~~~~~~~~~~~~~~~~----~~~~~~~ 128 (129)
++-+|+.+- ..+.|+.||.|.+.+.+++....++.+-.. .+|..+|
T Consensus 191 I~R~g~~iiP~g~t~i~~gD~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~G 242 (461)
T 4g65_A 191 IFRQGRPIRPQGTTIIEADDEVFFVAASNHIRSVMSELQRLEKPYRRIMIVG 242 (461)
T ss_dssp EEETTEEECCCTTCBCCTTCEEEEEEETTTHHHHHHHTTGGGSCCCEEEEEC
T ss_pred EEECCeeccCCCCceecCCCEEEEEeccchHHHHHHhhccccccccEEEEEc
Confidence 445565553 557899999999988887777666555432 3566665
No 80
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=38.73 E-value=12 Score=24.79 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=31.6
Q ss_pred EEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEec-----CchhhhccccccCC
Q psy5454 71 IVTVTPCSREAETFVNGQRIFETTILQVVVAASAVA-----EKQQQSDNLKEIDN 120 (129)
Q Consensus 71 ~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~-----~~~~~~~~~~~~~~ 120 (129)
.+.|.-.--.+-+.+||... ..-+.||+|.+.+ +.+.+...|++++-
T Consensus 33 TYvI~GerGSG~I~lNGAAA---rl~~~GD~vII~aY~~~~~~e~~~~~P~vV~v 84 (96)
T 1vc3_B 33 TYALPGERGSGVIGINGAAA---HLVKPGDLVILVAYGVFDEEEARNLKPTVVLV 84 (96)
T ss_dssp EECEEECTTTTCEEEEGGGG---GTCCTTCEEEEEEEEEECHHHHTTCCCEEEEE
T ss_pred EEEEEccCCCCeEEEchHHH---ccCCCCCEEEEEECccCCHHHHhcCCCEEEEE
Confidence 34444331135789999865 4568899999866 66667778887643
No 81
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=37.91 E-value=12 Score=24.87 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCCC-CcEEEEEc-CC----EEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEec-----CchhhhccccccC--CCcc
Q psy5454 57 NIQP-RHCVIAHT-EG----IVTVTPCSREAETFVNGQRIFETTILQVVVAASAVA-----EKQQQSDNLKEID--NDTT 123 (129)
Q Consensus 57 ~I~~-~Hc~I~~~-~g----~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~-----~~~~~~~~~~~~~--~~~~ 123 (129)
+|.+ +-..|.+- +| .+.|.-.- .+-+.+||... ..-+.||+|.|.+ +.+.+...|+++. .+.+
T Consensus 12 ~il~~E~V~IvNvnNG~RfeTYvI~Ger-SG~I~lNGAAA---rl~~~GD~vII~aY~~~~~~e~~~~~P~vV~vd~~N~ 87 (97)
T 1uhe_A 12 KLREGMKVEIVDVNNGERFSTYVILGKK-RGEICVNGAAA---RKVAIGDVVIILAYASMNEDEINAHKPSIVLVDEKNE 87 (97)
T ss_dssp TCCTTCEEEEEETTTCCEEEEECEEECS-TTCEEEEGGGG---GGCCTTCEEEEEEEEEECHHHHHHCCCEEEEECTTSC
T ss_pred CCCCCCEEEEEECCCCceEEEEEEeecc-CCeEEEchHHH---ccCCCCCEEEEEECccCCHHHHhcCCCEEEEECCCCC
Confidence 3444 33455553 33 45555442 56799999865 4568899999866 6666777888764 4455
Q ss_pred EEeec
Q psy5454 124 ILMIG 128 (129)
Q Consensus 124 ~~~~~ 128 (129)
|.-.|
T Consensus 88 i~~~~ 92 (97)
T 1uhe_A 88 ILEKG 92 (97)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 55443
No 82
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=35.84 E-value=3.8 Score=30.70 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=22.6
Q ss_pred CCceEEcCEEcc-eeEEcCCCCEEEEecC
Q psy5454 80 EAETFVNGQRIF-ETTILQVVVAASAVAE 107 (129)
Q Consensus 80 ~~~t~VNG~~I~-~~~~L~~GDrI~~~~~ 107 (129)
.+.+.|||+.+. ....+..||.|.+.-.
T Consensus 119 ~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 119 HKAIMVNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp TTCCBSSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred CCCEEECCEEEccCCcCcCCCCEEEecCc
Confidence 468999999996 4579999999987543
No 83
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=35.67 E-value=25 Score=24.01 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=39.1
Q ss_pred cCCCCCC-CcEEEEEc-CC----EEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEec-----CchhhhccccccCCC
Q psy5454 54 FGPNIQP-RHCVIAHT-EG----IVTVTPCSREAETFVNGQRIFETTILQVVVAASAVA-----EKQQQSDNLKEIDND 121 (129)
Q Consensus 54 ~g~~I~~-~Hc~I~~~-~g----~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~-----~~~~~~~~~~~~~~~ 121 (129)
...+|.+ +...|.+- +| .+.|.-.--.+-+.+||... ..-+.||+|.|.+ +.+.+. .|++++-|
T Consensus 37 ~aA~i~~~E~V~I~NvnNG~Rf~TYvI~GerGSg~I~lNGAAA---r~~~~GD~vII~ay~~~~~~e~~~-~P~vV~vd 111 (114)
T 3oug_A 37 KQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIALNGPAA---RRCEIGDQLFIISYTQVDPTRENI-KPKLVDLK 111 (114)
T ss_dssp HHTTCCTTBEEEEEETTTCCEEEEEEEEECTTSCCEEEEGGGG---GGCCTTCEEEEEEEEEECTTSCCC-CCEEEECC
T ss_pred HHcCCCcCCEEEEEECCCCceEEEEEEEccCCCCEEEeCCHHH---hccCCCCEEEEEECCcCCHHHHhc-CCEEEEeC
Confidence 3457776 44566664 33 45555431235699999875 4568899999875 444444 67765544
No 84
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.85 E-value=6.3 Score=24.26 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=19.4
Q ss_pred CCceEEcCEEccee-EEcCC--CCEEEEecC
Q psy5454 80 EAETFVNGQRIFET-TILQV--VVAASAVAE 107 (129)
Q Consensus 80 ~~~t~VNG~~I~~~-~~L~~--GDrI~~~~~ 107 (129)
.+.++|||+.+..+ ..+.. +|.|.+.-.
T Consensus 32 ~G~V~Vng~~v~kps~~V~~~~~d~I~~~~~ 62 (71)
T 2cqj_A 32 QGHVRVGPDVVTDPAFLVTRSMEDFVTWVDS 62 (71)
T ss_dssp TTCEEETTBCCCCTTCEEEHHHHTTEEESCC
T ss_pred CCcEEECCEEECCCCCCCCCCCCcEEEEECC
Confidence 36799999999744 34444 788876543
No 85
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=30.03 E-value=25 Score=24.80 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=41.1
Q ss_pred cCCCCCC-CcEEEEEc-CC----EEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEec-----CchhhhccccccCC
Q psy5454 54 FGPNIQP-RHCVIAHT-EG----IVTVTPCSREAETFVNGQRIFETTILQVVVAASAVA-----EKQQQSDNLKEIDN 120 (129)
Q Consensus 54 ~g~~I~~-~Hc~I~~~-~g----~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~-----~~~~~~~~~~~~~~ 120 (129)
...+|.+ +...|.+- +| .+.|.-.--.+-+.+||... ..-+.||+|.|.+ +.+.+...|++++-
T Consensus 34 daAgIl~~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNGAAA---rl~~~GD~vII~aYa~~~~~E~~~~~P~vV~v 108 (139)
T 2c45_A 34 DAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAAA---HLVHPGDLVILIAYATMDDARARTYQPRIVFV 108 (139)
T ss_dssp HHTTCCSSCCEEEEETTTCCEEEECEEEECTTTTCEEEESSTT---TTSCTTCEEEEEECCEEEHHHHHSCCCEEEEC
T ss_pred HHcCCCCCCEEEEEECCCCceEEEEEEEccCCCCEEEEchHHH---ccCCCCCEEEEEECCcCCHHHhccCCCeEEEE
Confidence 3356666 45666664 33 44454331235799999875 4567899999876 55666677877643
No 86
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=29.50 E-value=29 Score=26.99 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=27.7
Q ss_pred EEEEEc-CCEEEEEeCCCCCceEEcCEEcc---------eeEEcCCCCEEEE
Q psy5454 63 CVIAHT-EGIVTVTPCSREAETFVNGQRIF---------ETTILQVVVAASA 104 (129)
Q Consensus 63 c~I~~~-~g~v~L~p~ss~~~t~VNG~~I~---------~~~~L~~GDrI~~ 104 (129)
..|..+ +|.|+++-+ ++..+||+.--.. .-.++.+|--+.+
T Consensus 103 V~L~~~~~G~Vwl~nl-S~~~IFVqS~~ln~~~g~~p~~tV~KI~pg~~lKV 153 (268)
T 1dd1_A 103 VQLECKGEGDVWVRCL-SDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKV 153 (268)
T ss_dssp EEEEEETTTEEEEEEC-SSSCEEEECHHHHHHHTCCTTCCEEEECTTCEEEE
T ss_pred eEEEEecCCcEEEEec-CCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEE
Confidence 456666 499999999 6899999764332 2245666665554
No 87
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=28.57 E-value=24 Score=21.84 Aligned_cols=30 Identities=10% Similarity=-0.136 Sum_probs=24.2
Q ss_pred CceEEcCEEcceeEEcCCCCEEEEecCchh
Q psy5454 81 AETFVNGQRIFETTILQVVVAASAVAEKQQ 110 (129)
Q Consensus 81 ~~t~VNG~~I~~~~~L~~GDrI~~~~~~~~ 110 (129)
-...|||+.+.-.+.|..++.|.+.+.+.+
T Consensus 47 vaakvNg~l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 47 VIAKVNNVVWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp CCEEESSSEECSSSCCCSSEEEEECSSCCS
T ss_pred EEEEECCEEECCCcCcCCCCEEEEEeCCCH
Confidence 355799998887789999999999886644
No 88
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=28.53 E-value=24 Score=25.04 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=40.1
Q ss_pred CCCCC-CcEEEEEc-CC----EEEEEeCCCCCceEEcCEEcceeEEcCCCCEEEEec-----CchhhhccccccCC
Q psy5454 56 PNIQP-RHCVIAHT-EG----IVTVTPCSREAETFVNGQRIFETTILQVVVAASAVA-----EKQQQSDNLKEIDN 120 (129)
Q Consensus 56 ~~I~~-~Hc~I~~~-~g----~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~~-----~~~~~~~~~~~~~~ 120 (129)
.+|.+ +-..|.+- +| .+.|.-.--.+-+.+||... ..-+.||+|.|.+ +.+.+...|++++-
T Consensus 53 AgIl~~EkV~IvNvnNG~RfeTYvI~GerGSG~I~lNGAAA---rl~~~GD~VII~sYa~~~~~E~~~~~P~VV~v 125 (143)
T 1pqh_A 53 AGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAA---HCASVGDIVIIASFVTMPDEEARTWRPNVAYF 125 (143)
T ss_dssp HTCCTTCEEEEEETTTCCEEEEEEEEECTTCCCEECCGGGG---GTCCTTCEEEEEEEEEEEHHHHTTCCCEEEEE
T ss_pred cCCCCCCEEEEEECCCCceEEEEEEEccCCCceEEechHHH---ccCCCCCEEEEEECccCCHHHhccCCCeEEEE
Confidence 47777 45666664 33 45554431235789999865 4568899999866 55666677777643
No 89
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=28.07 E-value=22 Score=27.51 Aligned_cols=26 Identities=4% Similarity=-0.268 Sum_probs=20.3
Q ss_pred CCceEEcC-E-Ecce-eEEcCCCCEEEEe
Q psy5454 80 EAETFVNG-Q-RIFE-TTILQVVVAASAV 105 (129)
Q Consensus 80 ~~~t~VNG-~-~I~~-~~~L~~GDrI~~~ 105 (129)
.+.++||| + .+.+ ...+..||.|.+.
T Consensus 31 ~G~V~Vng~~~~v~kp~~~V~~~d~I~v~ 59 (291)
T 3hp7_A 31 AGLVVNVINGERYDKPGEKIDDGTELKLK 59 (291)
T ss_dssp TTCEEETTTCCBCCCTTCEEETTCCEEET
T ss_pred CCeEEECCeEEEEccCCCCCCCCCEEEEc
Confidence 35799999 8 6763 4688999999884
No 90
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=26.75 E-value=29 Score=26.36 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=27.8
Q ss_pred EEEEEcC-CEEEEEeCCCCCceEEcCEEcc---------eeEEcCCCCEEEE
Q psy5454 63 CVIAHTE-GIVTVTPCSREAETFVNGQRIF---------ETTILQVVVAASA 104 (129)
Q Consensus 63 c~I~~~~-g~v~L~p~ss~~~t~VNG~~I~---------~~~~L~~GDrI~~ 104 (129)
..|..++ |.|+++-+ ++..+||+.--.. .-.++.+|--+.+
T Consensus 69 V~L~~~~~G~Vw~~n~-S~~~IFVqS~~ln~~~~~~p~~~V~Ki~pg~~lKv 119 (234)
T 1ygs_A 69 VQLECKGEGDVWVRCL-SDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKV 119 (234)
T ss_dssp EEEEEETTTEEEEEEC-SSSCEEEECHHHHHTTTCCTTCCCEEECTTCEEEE
T ss_pred eEEEEecCCcEEEEec-CCCCEEEcCCCccccccCCCCCcEEEeCCCCeEEE
Confidence 4566664 99999999 6899999764332 2245666665554
No 91
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=26.10 E-value=21 Score=24.22 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred EEEeCCCCCceEEcCEEcce-eEEcCCCCEEEEe-----cCch---hhhccccccCCCccEEeecC
Q psy5454 73 TVTPCSREAETFVNGQRIFE-TTILQVVVAASAV-----AEKQ---QQSDNLKEIDNDTTILMIGT 129 (129)
Q Consensus 73 ~L~p~ss~~~t~VNG~~I~~-~~~L~~GDrI~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~ 129 (129)
+|.-+ +.+++.|||+.... +..+.++-...+. ..+. ..++....+++..-|+.+||
T Consensus 5 ~I~~y-~~g~~~ing~~~~~~siiv~p~~~~~w~w~~~g~~~~~~l~~~~l~~ll~~~~evliiGt 69 (122)
T 2ab1_A 5 EIASL-SWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGR 69 (122)
T ss_dssp CEEEE-ETTEEEETTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHHHHHTTCCSEEEEEE
T ss_pred EEEEE-cCCEEEECCEEEeCCCEEEECCccccCcccccCcCChhHCCHHHHHHHhhCCCCEEEECC
Confidence 45555 35688888888877 6665554443433 2111 11233344566677777775
No 92
>1l7l_A PA-I galactophilic lectin; agglutinin, single wavelength anomalous scattering phasing, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa} SCOP: b.18.1.16 PDB: 1oko_A* 1uoj_A 2vxj_A* 2wyf_A* 3zyh_A* 3zyb_A* 3zyf_A*
Probab=24.39 E-value=50 Score=22.52 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=14.7
Q ss_pred cCEEcceeEEcCCCCEEEEec
Q psy5454 86 NGQRIFETTILQVVVAASAVA 106 (129)
Q Consensus 86 NG~~I~~~~~L~~GDrI~~~~ 106 (129)
||++ ....|+.||.|.|.|
T Consensus 12 ~Gq~--Tglilk~GDvIsIvA 30 (121)
T 1l7l_A 12 AGQV--TSIIYNPGDVITIVA 30 (121)
T ss_dssp TCEE--EEEEECTTCCEEEEE
T ss_pred CCCe--eeEEecCCCEEEEee
Confidence 4554 456899999999976
No 93
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=24.23 E-value=53 Score=22.42 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=31.9
Q ss_pred CEEEEEeCCCCCceEEcCEEcceeEEcCCCCEE-EEecCch---hhhccccccCCCccEEeecC
Q psy5454 70 GIVTVTPCSREAETFVNGQRIFETTILQVVVAA-SAVAEKQ---QQSDNLKEIDNDTTILMIGT 129 (129)
Q Consensus 70 g~v~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI-~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 129 (129)
+...|.-+ +.+++.|||+....+..+.++-.+ .+....- ..++.-..++.+.-|+.+||
T Consensus 10 ~~~~I~~y-~~g~f~i~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~ll~~~pevliiGT 72 (132)
T 2gm2_A 10 YTYALRAA-DGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAVLALNPAVILLGT 72 (132)
T ss_dssp CCCCEEEE-CSSCEEETTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHHHHHHCCSEEEEEC
T ss_pred CCceEEEE-cCCEEEECCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHHHHhcCCCEEEECC
Confidence 34556777 457888999988777766555442 2221111 11222223334456777776
No 94
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=23.00 E-value=79 Score=29.44 Aligned_cols=30 Identities=13% Similarity=-0.047 Sum_probs=24.8
Q ss_pred CCCceEEcCEEcc--eeEEcCCCCEEEEecCc
Q psy5454 79 REAETFVNGQRIF--ETTILQVVVAASAVAEK 108 (129)
Q Consensus 79 s~~~t~VNG~~I~--~~~~L~~GDrI~~~~~~ 108 (129)
......|||+++. .+..++.||++.|+..+
T Consensus 552 a~~~~~l~g~~~~~~~~~~v~~G~~L~~g~~~ 583 (1236)
T 3va7_A 552 GTVSCTLNDAQIAQNEPIEVKRGDILSVGKVT 583 (1236)
T ss_dssp EEEEEEETTEECCTTSCEEECSSCEEEEEEEE
T ss_pred CCCcceECCEEccCCeEEEeCCCCEEEeCCCC
Confidence 3457789999997 77999999999997643
No 95
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.93 E-value=76 Score=22.05 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=16.0
Q ss_pred CEEEEEeCCCCCceEEcCEEcc
Q psy5454 70 GIVTVTPCSREAETFVNGQRIF 91 (129)
Q Consensus 70 g~v~L~p~ss~~~t~VNG~~I~ 91 (129)
..++|.|- ++.+.|||+++.
T Consensus 15 Arv~l~~G--~G~i~VNg~~l~ 34 (135)
T 3j20_K 15 ARAVIREG--KGRVRINGKPVE 34 (135)
T ss_dssp EEEEEEES--SCCEEETTEEGG
T ss_pred EEEEEEeC--ceEEEECCeeHH
Confidence 36788885 468999999985
No 96
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=22.75 E-value=2e+02 Score=21.54 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=29.7
Q ss_pred EEEEEcCCEEEEEeCCCCCceEEcCE--------EcceeEEcCCCCEEEE
Q psy5454 63 CVIAHTEGIVTVTPCSREAETFVNGQ--------RIFETTILQVVVAASA 104 (129)
Q Consensus 63 c~I~~~~g~v~L~p~ss~~~t~VNG~--------~I~~~~~L~~GDrI~~ 104 (129)
..|..++|.|+++-+ ++..+||+.- ....-.++..|--+.+
T Consensus 96 V~L~~~~G~V~~~nl-S~~~IFVqS~~~n~~~~~~~~tV~Ki~pg~~lKv 144 (227)
T 1khx_A 96 VRLYYIGGEVFAECL-SDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKI 144 (227)
T ss_dssp EEEEEETTEEEEEEC-SSSCEEEECHHHHHHTTCCTTCCEEECTTCEEEE
T ss_pred eEEEEECCEEEEEEc-CCCCEEEeCCCcccccCCCcCceEEeCCCCeEEE
Confidence 466778899999999 5899999653 2333456777776665
No 97
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=22.43 E-value=23 Score=28.40 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=19.8
Q ss_pred EcCEEcceeEEcCCCCEEEEecCch
Q psy5454 85 VNGQRIFETTILQVVVAASAVAEKQ 109 (129)
Q Consensus 85 VNG~~I~~~~~L~~GDrI~~~~~~~ 109 (129)
+||+++.....|++||.|.|.+.|+
T Consensus 373 ~~~~~~g~~~~l~dgDvv~i~~~~~ 397 (397)
T 1wxq_A 373 RTKRRVGEDYELQFNDIVKIVSVTR 397 (397)
T ss_dssp TTCSBCCTTCCCCTTEEEEEEEC--
T ss_pred cCCEEcCCCccccCCCEEEEEeCCC
Confidence 3888887778999999999987653
No 98
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.76 E-value=56 Score=19.84 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=34.7
Q ss_pred cCCEEEEEeCCCCCceEEcCEEccee--EEcCCCCEEEEecCch-----hhhccccccCCC
Q psy5454 68 TEGIVTVTPCSREAETFVNGQRIFET--TILQVVVAASAVAEKQ-----QQSDNLKEIDND 121 (129)
Q Consensus 68 ~~g~v~L~p~ss~~~t~VNG~~I~~~--~~L~~GDrI~~~~~~~-----~~~~~~~~~~~~ 121 (129)
..|-=||+|.+ +..+||--..|... ..|..|++|.+..+.- .|+.+-+.+++.
T Consensus 12 ~kGfGFI~~~~-g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~~kG~~A~~V~~~~~~ 71 (73)
T 3a0j_A 12 EKGYGFIEREG-DTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEPA 71 (73)
T ss_dssp TTTEEEEECTT-SCCEEEEGGGBCSSSCSSCCTTCEEEEEEECCSCCSSSEEEEEEEEECC
T ss_pred CCCEEEEecCC-CCcEEEEhhhccccCCCCCCCCCEEEEEEEECCCCCCCEEEEEEeCCCC
Confidence 35666888874 47899876666533 4799999999866332 355555544443
No 99
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=20.81 E-value=88 Score=21.91 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCceEEcCEEcc
Q psy5454 71 IVTVTPCSREAETFVNGQRIF 91 (129)
Q Consensus 71 ~v~L~p~ss~~~t~VNG~~I~ 91 (129)
.+++.|- ++.+.|||+++.
T Consensus 19 rv~l~~G--~G~i~VNg~~l~ 37 (143)
T 3u5c_Q 19 VAHVKAG--KGLIKVNGSPIT 37 (143)
T ss_dssp EEEEEEC--SCCEEETTEETT
T ss_pred EEEEEeC--ceEEEECCCcHH
Confidence 5677775 468999999986
No 100
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=20.67 E-value=44 Score=23.00 Aligned_cols=32 Identities=3% Similarity=-0.048 Sum_probs=18.5
Q ss_pred EEEeCCCCCceEEcCEEcceeEEcCCCCEEEEe
Q psy5454 73 TVTPCSREAETFVNGQRIFETTILQVVVAASAV 105 (129)
Q Consensus 73 ~L~p~ss~~~t~VNG~~I~~~~~L~~GDrI~~~ 105 (129)
.|.-+ +.+++.|||+....+..+.++-...+.
T Consensus 15 ~I~~y-~~g~f~ing~~~~gsilv~p~~~~~W~ 46 (135)
T 2fvt_A 15 AIDAY-GKGGFYFAGMSHQGSLLFLPDAVWGWD 46 (135)
T ss_dssp CCCCE-ETTEEECSSSEECSEEEECSSCEEEES
T ss_pred eEEEE-cCCEEEECCEEEEeCEEEeCCCccccC
Confidence 34444 345777777777766655554444443
No 101
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=20.32 E-value=50 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=18.8
Q ss_pred EEcCEEcceeEEcCCCCEEEEecCchhh
Q psy5454 84 FVNGQRIFETTILQVVVAASAVAEKQQQ 111 (129)
Q Consensus 84 ~VNG~~I~~~~~L~~GDrI~~~~~~~~~ 111 (129)
.+||.++.+...=.+.-.|.+..+.++|
T Consensus 30 L~nG~~l~G~I~~fD~f~VlL~~~g~qq 57 (78)
T 3ahu_A 30 LLNGFQLRGQVKGFDNFTVLLESEGKQQ 57 (78)
T ss_dssp ETTSCEEEEEEEEECSSEEEEESSSCEE
T ss_pred EeCCeEEEEEEEEEcceEEEEEECCeeE
Confidence 4577777776666677777776665554
Done!