RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5454
         (129 letters)



>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain.  Found in eukaryotic
          and prokaryotic proteins. Putative nuclear signalling
          domain.
          Length = 52

 Score = 41.4 bits (98), Expect = 2e-06
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 47 QSQSLQLFGPNIQPRHCVIAHTEG-IVTVTPCSREAETFVNGQRI 90
          +   +QL GP+I  RH VI +  G    +        TFVNG+RI
Sbjct: 8  EDCDIQLDGPSISRRHAVIVYDGGGRFYLIDLGSTNGTFVNGKRI 52


>gnl|CDD|215951 pfam00498, FHA, FHA domain.  The FHA (Forkhead-associated) domain
          is a phosphopeptide binding motif.
          Length = 67

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 48 SQSLQLFGPNIQPRHCVIAHTEGI-VTVTPCSREAETFVNGQRI 90
             + L  P++  RH  I +  G    +        TFVNGQR+
Sbjct: 8  DCDIVLDDPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRL 51


>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in
          eukaryotic and prokaryotic proteins. Putative nuclear
          signalling domain. FHA domains may bind
          phosphothreonine, phosphoserine and sometimes
          phosphotyrosine. In eukaryotes, many FHA
          domain-containing proteins localize to the nucleus,
          where they participate in establishing or maintaining
          cell cycle checkpoints, DNA repair, or transcriptional
          regulation. Members of the FHA family include: Dun1,
          Rad53,  Cds1, Mek1, KAPP(kinase-associated protein
          phosphatase),and Ki-67 (a human nuclear protein related
          to cell proliferation).
          Length = 102

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)

Query: 21 TSGSPKRHRLHP-NVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE--GIVTVTPC 77
             S +R+ L P     +G D  +       + L  P++  RH VI +    G+V +   
Sbjct: 9  GDASGRRYYLDPGGTYTIGRDSDNC-----DIVLDDPSVSRRHAVIRYDGDGGVVLIDLG 63

Query: 78 SREAETFVNGQRIF--ETTILQ 97
          S    TFVNGQR+   E   L+
Sbjct: 64 ST-NGTFVNGQRVSPGEPVRLR 84


>gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R
           taste receptor.  Ligand-binding domain of the T1R taste
           receptor. The T1R is a member of the family C receptors
           within the G-protein coupled receptor superfamily, which
           also includes the metabotropic glutamate receptors,
           GABAb receptors, the calcium-sensing receptor (CaSR),
           the V2R pheromone receptors, and a small group of
           uncharacterized orphan receptors.
          Length = 410

 Score = 32.7 bits (75), Expect = 0.031
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 34  VTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFET 93
           V  +GSD    YG+   LQLF   I      IA+   I   T    + +  +  ++I +T
Sbjct: 179 VAFLGSDDE--YGR-DGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQIL--KQINQT 233

Query: 94  TILQVVVAAS 103
            +  +VV AS
Sbjct: 234 KVNVIVVFAS 243


>gnl|CDD|237959 PRK15404, PRK15404, leucine ABC transporter subunit
           substrate-binding protein LivK; Provisional.
          Length = 369

 Score = 26.1 bits (58), Expect = 5.7
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 69  EGIVTVTPCSREAE-TFVNGQRIFETTIL---QVVVAASAVAEK 108
           EGI+ +TP +   E T    Q IF T  L   Q   AA  + EK
Sbjct: 115 EGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEK 158


>gnl|CDD|237964 PRK15426, PRK15426, putative diguanylate cyclase YedQ; Provisional.
          Length = 570

 Score = 26.1 bits (58), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 102 ASAVAEKQQQSDNLKEID--NDTTI 124
           A+ VAE+ +   N KEI     TTI
Sbjct: 493 AAQVAERIRLRINEKEILVAKSTTI 517


>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
           This model describes a conserved domain found in surface
           proteins of a number of Firmutes. Many members have
           LPXTG C-terminal anchoring motifs and a substantial
           number have the KxYKxGKxW putative sorting signal at the
           N-terminus. The tetracycline resistance plasmid pCF10 in
           Enterococcus faecalis promotes conjugal plasmid transfer
           in response to sex pheromones, but PgrA/Sec10 encoded by
           that plasmid, a member of this family, specifically
           inhibits the ability of cells to receive homologous
           plasmids. The phenomenon is called surface exclusion.
          Length = 356

 Score = 25.5 bits (56), Expect = 9.0
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 97  QVVVAASAVAEKQQQSDNLKEIDNDTTILM 126
            +  A + +   Q + D    +    TI +
Sbjct: 1   ALAAAQAELNNAQAKVDKANALAGVNTITL 30


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.128    0.355 

Gapped
Lambda     K      H
   0.267   0.0799    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,089,607
Number of extensions: 504209
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 15
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)