RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5454
(129 letters)
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 79.2 bits (195), Expect = 2e-20
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 21 TSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSRE 80
+ PK +RL +VTEVG+++ S+QLFGP IQP HC + + +G+VTVTP S +
Sbjct: 24 SRDKPKLYRLQLSVTEVGTEKFDD----NSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMD 79
Query: 81 AETFVNGQRIFETTILQ 97
AET+V+GQRI ETT+LQ
Sbjct: 80 AETYVDGQRISETTMLQ 96
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 49.9 bits (119), Expect = 4e-09
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 28 HRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT-EGIVTVTPCSREAETFVN 86
+ L + T +GS SQ +QL G I P HC+I T EG V +TP TFVN
Sbjct: 44 YYLKEH-TLIGSAN------SQDIQLCGMGILPEHCIIDITSEGQVMLTPQK-NTRTFVN 95
Query: 87 GQRIFETTILQ 97
G + L
Sbjct: 96 GSSVSSPIQLH 106
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 49.8 bits (118), Expect = 5e-09
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 28 HRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEG-----IVTVTPCSREAE 82
+ + +T VG A Q + L G +I+ HC+ IVT+ PC R E
Sbjct: 26 YYIKDGITRVGQADAER---RQDIVLSGAHIKEEHCIFRSERSNSGEVIVTLEPCERS-E 81
Query: 83 TFVNGQRIFETTILQ 97
T+VNG+R+ + L+
Sbjct: 82 TYVNGKRVSQPVQLR 96
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural
genomics consortium, kines transport protein; 2.60A
{Homo sapiens} SCOP: b.26.1.2
Length = 104
Score = 46.9 bits (111), Expect = 4e-08
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 12 LKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHT--- 68
L N N + S + + VT VG ++L G I+ +HC+
Sbjct: 6 LVNLNEDPLMSE-CLLYHIKDGVTRVGQ-------VDMDIKLTGQFIREQHCLFRSIPQP 57
Query: 69 --EGIVTVTPCSREAETFVNGQRIFETTILQ 97
E +VT+ PC AET+VNG+ + E +L+
Sbjct: 58 DGEVVVTLEPCE-GAETYVNGKLVTEPLVLK 87
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens}
SCOP: b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 34.0 bits (78), Expect = 0.004
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFV 85
L + G +++ P + +HC I E + S T V
Sbjct: 26 PHFPLSLSTCLFGRGIEC------DIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQV 79
Query: 86 NGQRIFETTILQ 97
NG I E L+
Sbjct: 80 NGSVIDEPVRLK 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.083
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 19/99 (19%)
Query: 2 KSELIKSSLLLKNYNGSEITSGSPKRHRLHPN--VTEVGSDRASPY----GQS------- 48
+ L+K+ L+KNY + I + P + + VG A GQ
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 49 --QSL-QLFGPNIQPRHCVIAHTEGIVTVTPCSREAETF 84
+ L Q + + + E + + + +AE
Sbjct: 172 ELRDLYQTYHVLVGD--LIKFSAETLSELIRTTLDAEKV 208
Score = 30.4 bits (68), Expect = 0.17
Identities = 28/121 (23%), Positives = 39/121 (32%), Gaps = 36/121 (29%)
Query: 3 SELIKSS--LLLKNYNGSEITSGSPKRHRLHPNVTEVGS-----DRA--------SPYGQ 47
+LIK S L SE+ + ++ + P
Sbjct: 185 GDLIKFSAETL------SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-- 236
Query: 48 SQSLQLFGPNIQPRH-CVIAHTEGIVTVTPCSREAETFVNGQRIFETTILQVVVAASAVA 106
S L G IQ H V A G TP E +++ G T Q +V A A+A
Sbjct: 237 --SCPLIGV-IQLAHYVVTAKLLG---FTP--GELRSYLKGA----TGHSQGLVTAVAIA 284
Query: 107 E 107
E
Sbjct: 285 E 285
Score = 26.9 bits (59), Expect = 2.3
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 26/66 (39%)
Query: 63 CVIAHTEGIVTVTPCSREAETFVN----GQRIFETTILQVVVAA--SAVAEKQQQSDNLK 116
V T +V + VN Q Q V A A+ + +K
Sbjct: 1832 RVGKRTGWLVEI----------VNYNVENQ--------QYVAAGDLRALDTVTNVLNFIK 1873
Query: 117 E--IDN 120
ID
Sbjct: 1874 LQKIDI 1879
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.090
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 47 QSQSLQLFGPNIQPRHCVIAHTE 69
Q+ SL+L+ + P + A E
Sbjct: 26 QA-SLKLYADDSAPALAIKATME 47
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 28.8 bits (65), Expect = 0.23
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 23 GSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAE 82
GS + ++L +G + + +L + RH I + + +
Sbjct: 13 GSGRTYQLREGSNIIGRGQDA------QFRLPDTGVSRRHLEIRWDGQVALLADLNSTNG 66
Query: 83 TFVNGQRIFETTI 95
T VN + E +
Sbjct: 67 TTVNNAPVQEWQL 79
>2xt9_B Putative signal transduction protein GARA; lyase-signaling
protein complex, KDH, KGD; HET: TPP; 2.20A
{Mycobacterium smegmatis}
Length = 115
Score = 27.3 bits (61), Expect = 0.80
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 6/70 (8%)
Query: 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFV 85
R L T G S + L + RH G V T+V
Sbjct: 24 SRFLLDQPTTSAGRHPDS------DIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYV 77
Query: 86 NGQRIFETTI 95
N + + +
Sbjct: 78 NREPVDSAVL 87
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 27.8 bits (61), Expect = 0.85
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 56 PNIQPRHCVIAHTEGIVTVTPCSREAE----TFVNGQRI 90
+HCVI + + + T +N I
Sbjct: 88 ETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.98
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 8/31 (25%)
Query: 1 MKSELIKSSLLLKNYNGSEITSGSPKRHRLH 31
+ ++L K SL+ K +
Sbjct: 407 VVNKLHKYSLVEKQPK--------ESTISIP 429
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 27.5 bits (61), Expect = 1.1
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 23 GSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPC-SREA 81
GS + ++L +G + + +L + RH I + + S
Sbjct: 75 GSGRTYQLREGSNIIGRGQDA------QFRLPDTGVSRRHLEIRWDGQVALLADLNSTNG 128
Query: 82 ETFVNGQRIFETTI 95
T VN + E +
Sbjct: 129 -TTVNNAPVQEWQL 141
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 27.1 bits (60), Expect = 1.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 61 RHCVIAHTE-GIVTVTPCSREAETFVNGQRI 90
+H I E G + + S T++NGQ++
Sbjct: 59 KHFQILLGEDGNLLLNDISTNG-TWLNGQKV 88
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 27.1 bits (60), Expect = 1.1
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 61 RHCVIAHTEGIVTVTPCSREAETFVNGQRIFETT 94
+H I G + T +N + T
Sbjct: 56 KHLRIESDSGNWVIQDLGSSNGTLLNSNALDPET 89
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 27.1 bits (60), Expect = 1.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 61 RHCVIAHTE--GIVTVTPCSREAETFVNGQRI 90
HC I E G VT+ S T +N ++
Sbjct: 47 DHCRIVVDEKSGQVTLEDTSTSG-TVINKLKV 77
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia
trachomatis}
Length = 106
Score = 26.5 bits (59), Expect = 1.6
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 61 RHCVIA-HTEGIVTVTPC-SREAETFVNGQRIFETTILQ 97
+H I + V + S+ V G++I + L
Sbjct: 48 QHAKIIIGNDNSVLIEDLGSKNG-VIVEGRKIEHQSTLS 85
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 26.8 bits (59), Expect = 1.6
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFV 85
R L +T G S + L + RH V T+V
Sbjct: 68 SRFLLDQAITSAGRHPDS------DIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYV 121
Query: 86 NGQRI 90
N + +
Sbjct: 122 NREPV 126
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
membrane, cell shape, cell WALL biogenesis/degradation,
membrane; 2.05A {Mycobacterium tuberculosis}
Length = 483
Score = 26.9 bits (60), Expect = 2.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 87 GQRIFETTILQVVVAASAVA 106
GQ+ T L A+ +A
Sbjct: 330 GQKDVALTPLANAEIAATIA 349
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Length = 205
Score = 26.8 bits (58), Expect = 2.1
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 56 PNIQPRHCVIAHTEGIVTVTPCSREAE----TFVNGQRI 90
+HCVI + + + T +N I
Sbjct: 135 ETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI 173
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 26.5 bits (58), Expect = 2.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 61 RHCVIAHTE-GIVTVTPCSREAETFVNGQRI 90
+H I E G + + S T++NGQ++
Sbjct: 87 KHFQILLGEDGNLLLNDISTNG-TWLNGQKV 116
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 26.4 bits (58), Expect = 2.5
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 6/74 (8%)
Query: 22 SGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREA 81
+ R L T G S + L + RH EG V
Sbjct: 55 PNAGARFLLDQPTTTAGRHPES------DIFLDDVTVSRRHAEFRINEGEFEVVDVGSLN 108
Query: 82 ETFVNGQRIFETTI 95
T+VN + +
Sbjct: 109 GTYVNREPRNAQVM 122
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.26.1.2
Length = 145
Score = 24.5 bits (53), Expect = 9.3
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 61 RHCVIAHT-EGIVTVTPC-SREAETFVNGQRI 90
HCV+ EG T+ S ++N R+
Sbjct: 62 NHCVLKQNPEGQWTIMDNKSLNG-VWLNRARL 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.355
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,779,140
Number of extensions: 93169
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 31
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.8 bits)