RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5454
         (129 letters)



>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 107

 Score = 55.8 bits (134), Expect = 7e-12
 Identities = 43/88 (48%), Positives = 62/88 (70%), Gaps = 5/88 (5%)

Query: 10 LLLKNYNGSEITSGSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTE 69
          L+  + +GS+ +   PK +RL  +VTEVG+++        S+QLFGP IQP HC + + +
Sbjct: 7  LVELSPDGSD-SRDKPKLYRLQLSVTEVGTEKFDD----NSIQLFGPGIQPHHCDLTNMD 61

Query: 70 GIVTVTPCSREAETFVNGQRIFETTILQ 97
          G+VTVTP S +AET+V+GQRI ETT+LQ
Sbjct: 62 GVVTVTPRSMDAETYVDGQRISETTMLQ 89


>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 35.8 bits (82), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 28 HRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEG----IVTVTPCSREAET 83
          + +   VT VG            ++L G  I+ +HC+          +V        AET
Sbjct: 19 YHIKDGVTRVGQV-------DMDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAET 71

Query: 84 FVNGQRIFETTILQ 97
          +VNG+ + E  +L+
Sbjct: 72 YVNGKLVTEPLVLK 85


>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 34.3 bits (78), Expect = 9e-04
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 26 KRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFV 85
              L  +    G            +++  P +  +HC I   E    +   S    T V
Sbjct: 16 PHFPLSLSTCLFGRGIEC------DIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQV 69

Query: 86 NGQRIFETTILQ 97
          NG  I E   L+
Sbjct: 70 NGSVIDEPVRLK 81


>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
          C-terminal domain {Mycobacterium tuberculosis [TaxId:
          1773]}
          Length = 99

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 23 GSPKRHRLHPNVTEVGSDRASPYGQSQSLQLFGPNIQPRHCVIAHTEGIVTVTPCSREAE 82
           S + + L    T +G    +       + L   N+   H VI  T     +        
Sbjct: 13 ASGRGYPLQAAATRIGRLHDN------DIVLDSANVSRHHAVIVDTGTNYVINDLRSSNG 66

Query: 83 TFVNGQRIFETTILQ 97
            V  +RI     L 
Sbjct: 67 VHVQHERIRSAVTLN 81


>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 118

 Score = 28.8 bits (64), Expect = 0.097
 Identities = 7/44 (15%), Positives = 13/44 (29%)

Query: 51 LQLFGPNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRIFETT 94
          + +    I  +H  I    G   +        T +N   +   T
Sbjct: 46 IAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALDPET 89


>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 122

 Score = 27.4 bits (60), Expect = 0.37
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 21/93 (22%)

Query: 7  KSSLLLKNYNGSEITSG--SPKRHRLHPNVTE-----VGSDRASPYGQSQSLQLFGPNIQ 59
           S L L      E+ +G     +H ++   +      +G    S       L L    + 
Sbjct: 3  SSWLFL------EVIAGPAIGLQHAVNSTSSSKLPVKLGRVSPS------DLALKDSEVS 50

Query: 60 PRHCVIAHT--EGIVTVTPCSREAETFVNGQRI 90
           +H  I     +    +        T VN   I
Sbjct: 51 GKHAQITWNSTKFKWELVDMGSLNGTLVNSHSI 83


>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 25.9 bits (56), Expect = 1.1
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 61 RHCVIA-HTEGIVTVTPCSREAETFVNGQRI 90
           HCV+  + EG  T+         ++N  R+
Sbjct: 50 NHCVLKQNPEGQWTIMDNKSLNGVWLNRARL 80


>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 127

 Score = 24.3 bits (52), Expect = 3.7
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 56 PNIQPRHCVIAHTEGIVTVTPCSREAETFVNGQRI 90
            +  +H  I   E    +        T++NGQ++
Sbjct: 54 SRLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKV 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.355 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,670
Number of extensions: 16791
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 9
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.9 bits)