BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5457
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
Query: 6 SVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWS 65
+ +LL Y++FR +PE+F LS + V+ + +PGVL RD+ GR V+ ++ NW
Sbjct: 109 AYELLRGYVNFRLQYPELFDSLSPE--AVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQ 166
Query: 66 SHLFSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGL 121
S + + I + + + Q +GF + ++ ++ + +L LR M+ L
Sbjct: 167 SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDML 226
Query: 122 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
QD +PARFKAIHFI++P +VKPFLK K ++V
Sbjct: 227 QDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV 265
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 6 SVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWS 65
+ +LL Y++FR +PE+F LS + V+ + +PGVL RD+ GR V ++ NW
Sbjct: 109 AYELLRGYVNFRLQYPELFDSLSPE--AVRCTIEAGYPGVLSSRDKYGRVVXLFNIENWQ 166
Query: 66 SHLFSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGL 121
S + + I + + + Q +GF + ++ + + +L LR + L
Sbjct: 167 SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKXVDXL 226
Query: 122 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
QD +PA FKAIHFI++P +VKPFLK K ++V
Sbjct: 227 QDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV 265
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
LL+NY +R PEI L + + L+ + GVL RD G VL + +W +
Sbjct: 69 LLKNYYKWRAECPEISADLHPRS--IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV 126
Query: 69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDC 124
F+ +F+ + + Q +G + D W + + +P++ + + + L D
Sbjct: 127 FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDS 186
Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+P + + IH INEPV + +++KPFL EK ++++
Sbjct: 187 FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL 68
LL+NY +R PEI L + + L+ + GVL RD G VL + +W +
Sbjct: 53 LLKNYYKWRAECPEISADLHPRS--IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV 110
Query: 69 FSLEAIFKXXXXXXXXXXVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDC 124
F+ +F+ + + Q +G + D W + + +P++ + + + L D
Sbjct: 111 FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDS 170
Query: 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+P + + IH INEPV + + +KPFL EK ++++
Sbjct: 171 FPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERI 206
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 121 LQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
++ YP K + + P V L+KPFL E TR K+
Sbjct: 178 FEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI 217
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 121 LQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
++ YP K + + P V L+KPFL E TR K+
Sbjct: 178 FEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI 217
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 121 LQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
++ YP K + + P V L+KPFL E TR K+
Sbjct: 178 FEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI 217
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 105 TSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+S Y+ + +R Q+ YP R + IN P L KPFL T K+
Sbjct: 182 SSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKI 237
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 122 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
Q+ YP R + I+ P + +VKPFL T K+
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI 252
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 122 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
Q+ YP R + I+ P + +VKPFL T K+
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI 252
>pdb|2GSI|A Chain A, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|C Chain C, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|E Chain E, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|G Chain G, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
Length = 215
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 91 IQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKA 131
++ SG+ ++ DWNQ P L ++S L+ PARF
Sbjct: 29 VRTSGYSYM-DWNQQKPGQPPRRLIYLVSNLESGVPARFSG 68
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 104 QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLAL 147
Q YAS L + +GL+ YP + K +HF+ ++ LLAL
Sbjct: 36 QQPHYASQEQLEDLFAGLEKAYPNQAK-VHFLGRSLEGRNLLAL 78
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEK 155
++FLL + I +PT+ T +G + F A H + EP+ + A ++ +
Sbjct: 114 YIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIR 173
Query: 156 TRDKVG 161
+ VG
Sbjct: 174 NKTIVG 179
>pdb|2Y6S|C Chain C, Structure Of An Ebolavirus-Protective Antibody In Complex
With Its Mucin-Domain Linear Epitope
pdb|2Y6S|L Chain L, Structure Of An Ebolavirus-Protective Antibody In Complex
With Its Mucin-Domain Linear Epitope
Length = 217
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 91 IQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKA 131
+ SG+ ++ WNQ P LL ++S L+ PARF
Sbjct: 29 VSTSGYSYM-HWNQQKPGQPPRLLIYLVSNLESGVPARFSG 68
>pdb|32C2|A Chain A, Structure Of An Activity Suppressing Fab Fragment To
Cytochrome P450 Aromatase
Length = 217
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 91 IQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKA 131
+ SG+ ++ WNQ P LL ++S L+ PARF
Sbjct: 29 VSTSGYGYM-HWNQQKPGQPPRLLIYLVSNLESGVPARFSG 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,593,897
Number of Sequences: 62578
Number of extensions: 159605
Number of successful extensions: 502
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 17
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)