Query psy5457
Match_columns 167
No_of_seqs 146 out of 1089
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 18:02:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1470|consensus 100.0 1E-36 2.2E-41 229.3 14.8 161 1-165 61-222 (324)
2 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 6.2E-32 1.3E-36 189.0 8.4 126 40-165 5-136 (159)
3 smart00516 SEC14 Domain in hom 100.0 1.7E-29 3.8E-34 176.4 14.2 127 38-165 5-134 (158)
4 KOG1471|consensus 100.0 3.3E-29 7.2E-34 193.3 13.5 157 1-162 57-231 (317)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3E-26 6.4E-31 158.9 12.5 124 42-165 9-136 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.5 1.8E-13 3.8E-18 94.8 6.4 115 46-166 6-124 (149)
7 KOG4406|consensus 98.7 5.2E-07 1.1E-11 70.6 11.5 132 28-165 65-202 (467)
8 PF11964 SpoIIAA-like: SpoIIAA 75.2 16 0.00035 23.0 5.9 77 68-151 10-87 (109)
9 PF14213 DUF4325: Domain of un 73.0 17 0.00037 21.6 5.6 52 94-146 16-69 (74)
10 KOG1534|consensus 70.4 28 0.0006 26.0 6.6 64 78-142 75-145 (273)
11 PRK02399 hypothetical protein; 67.7 66 0.0014 26.2 10.9 81 68-154 312-404 (406)
12 PRK14484 phosphotransferase ma 65.4 25 0.00054 23.5 5.2 47 94-150 58-104 (124)
13 TIGR02364 dha_pts dihydroxyace 61.8 45 0.00097 22.2 6.7 52 93-153 59-111 (125)
14 PF04378 RsmJ: Ribosomal RNA s 56.1 12 0.00026 28.2 2.6 34 125-158 201-234 (245)
15 COG2961 ComJ Protein involved 54.0 16 0.00035 27.7 3.0 30 128-157 235-264 (279)
16 PF02875 Mur_ligase_C: Mur lig 44.2 68 0.0015 19.5 4.5 38 93-136 11-48 (91)
17 PF01740 STAS: STAS domain; I 44.0 57 0.0012 20.8 4.2 49 96-146 49-97 (117)
18 PF13342 Toprim_Crpt: C-termin 39.9 49 0.0011 19.1 3.0 32 25-56 12-44 (62)
19 PF08923 MAPKK1_Int: Mitogen-a 37.8 96 0.0021 20.5 4.5 52 49-101 23-74 (119)
20 PF04548 AIG1: AIG1 family; I 37.0 1.6E+02 0.0035 21.2 7.5 70 96-165 50-124 (212)
21 cd07042 STAS_SulP_like_sulfate 36.5 1E+02 0.0022 18.9 5.4 51 96-148 42-92 (107)
22 PF05728 UPF0227: Uncharacteri 36.1 1.2E+02 0.0027 21.6 5.2 67 99-167 2-68 (187)
23 KOG0534|consensus 36.0 26 0.00056 27.1 1.8 43 113-158 201-243 (286)
24 PRK00095 mutL DNA mismatch rep 33.4 74 0.0016 27.4 4.3 32 28-59 573-604 (617)
25 KOG1838|consensus 32.9 2.8E+02 0.006 22.8 9.8 81 52-146 123-214 (409)
26 cd07043 STAS_anti-anti-sigma_f 32.3 1.2E+02 0.0025 18.3 5.1 51 96-148 39-89 (99)
27 TIGR02886 spore_II_AA anti-sig 31.3 1.3E+02 0.0029 18.6 5.6 51 96-148 40-90 (106)
28 PF07872 DUF1659: Protein of u 30.9 76 0.0017 17.1 2.7 29 46-75 13-42 (47)
29 PRK05365 malonic semialdehyde 30.8 1.2E+02 0.0026 21.5 4.5 55 4-60 3-57 (195)
30 KOG4178|consensus 29.2 2.9E+02 0.0063 21.9 6.6 77 48-140 66-149 (322)
31 TIGR00377 ant_ant_sig anti-ant 29.0 1.5E+02 0.0032 18.4 5.1 50 95-148 43-94 (108)
32 PF04838 Baculo_LEF5: Baculovi 28.7 64 0.0014 22.4 2.5 40 114-154 17-58 (159)
33 PF06792 UPF0261: Uncharacteri 26.6 3.6E+02 0.0078 22.1 9.7 81 68-152 311-402 (403)
34 COG2112 Predicted Ser/Thr prot 26.6 65 0.0014 23.4 2.4 29 94-122 142-170 (201)
35 PF08152 GUCT: GUCT (NUC152) d 26.1 71 0.0015 20.2 2.3 21 142-162 32-52 (97)
36 PF11339 DUF3141: Protein of u 25.3 2E+02 0.0042 24.6 5.2 60 69-139 116-175 (581)
37 PF09292 Neil1-DNA_bind: Endon 25.1 43 0.00093 17.3 0.9 11 49-59 21-31 (39)
38 PF03641 Lysine_decarbox: Poss 24.5 2.2E+02 0.0048 18.9 4.8 35 131-165 86-125 (133)
39 cd07268 Glo_EDI_BRP_like_4 Thi 23.3 63 0.0014 22.4 1.8 15 48-62 31-45 (149)
40 PF13082 DUF3931: Protein of u 22.7 72 0.0016 17.8 1.6 19 44-62 40-58 (66)
41 COG2994 HlyC ACP:hemolysin acy 22.5 70 0.0015 22.0 1.8 81 37-131 48-129 (148)
42 PF04068 RLI: Possible Fer4-li 22.0 1.3E+02 0.0027 15.2 2.5 25 55-79 2-26 (35)
43 COG0323 MutL DNA mismatch repa 21.6 1.6E+02 0.0034 25.6 4.2 52 9-60 575-626 (638)
44 cd06844 STAS Sulphate Transpor 21.4 2.1E+02 0.0046 17.6 5.7 51 96-148 40-90 (100)
45 smart00696 DM9 Repeats found i 20.9 98 0.0021 18.3 2.1 16 46-61 18-33 (71)
46 PRK11700 hypothetical protein; 20.7 74 0.0016 22.9 1.7 17 46-62 67-83 (187)
47 PRK02963 carbon starvation ind 20.5 4.3E+02 0.0094 20.8 6.2 55 47-105 225-284 (316)
48 COG1448 TyrB Aspartate/tyrosin 20.1 4.9E+02 0.011 21.3 6.8 74 55-138 173-264 (396)
49 cd07041 STAS_RsbR_RsbS_like Su 20.1 2.3E+02 0.0051 17.6 6.1 51 96-148 42-92 (109)
No 1
>KOG1470|consensus
Probab=100.00 E-value=1e-36 Score=229.29 Aligned_cols=161 Identities=24% Similarity=0.356 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHH
Q psy5457 1 MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLL 80 (167)
Q Consensus 1 f~v~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~ 80 (167)
||+++|.+|+.+++.||+.++.- . .+..+++...++.|.++.. |.|++||||+|+|+..+.++..++++..|+++|
T Consensus 61 wnv~kA~kml~~tL~WR~~~~~~--~-~~~~~Ev~~e~~tGK~yi~-G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy 136 (324)
T KOG1470|consen 61 WNVKKASKMLSNTLKWRRSFGPE--E-VIEADEVAAELETGKAYIL-GHDKDGRPVLYLRPRPHRQNTKTQKELERLLVY 136 (324)
T ss_pred CcHHHHHHHHHHHhHHHHhcCCc--c-ccCHHHHHHHhhcCcEEEe-cccCCCCeEEEEecCCCCCCCCCHHHHHHHHHH
Confidence 79999999999999999998632 1 1334458888999997654 899999999999998888899999999999999
Q ss_pred HHHHHhhccCcceecEEEEEecCCCcc-ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcc
Q psy5457 81 LMDSLLVDTKIQYSGFVFLLDWNQTSI-YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDK 159 (167)
Q Consensus 81 ~~e~~~~~~~~~~~g~v~I~D~~g~~~-~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~k 159 (167)
++|.++.-.+.+++++++++|++|+|+ +.+.+..|.++.++|+|||||++..+++|+||+|..+|+++|||++++|++|
T Consensus 137 ~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~K 216 (324)
T KOG1470|consen 137 TLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASK 216 (324)
T ss_pred HHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhce
Confidence 999999877667888999999999995 7899999999999999999999999999999999999999999999999999
Q ss_pred eeEeec
Q psy5457 160 VGAVLT 165 (167)
Q Consensus 160 i~~~~~ 165 (167)
|+|+.+
T Consensus 217 v~F~~~ 222 (324)
T KOG1470|consen 217 VKFVEP 222 (324)
T ss_pred eEEecC
Confidence 999875
No 2
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=6.2e-32 Score=188.96 Aligned_cols=126 Identities=33% Similarity=0.502 Sum_probs=103.8
Q ss_pred hcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhc-cC-cceecEEEEEecCCCcc-ccC---HHH
Q psy5457 40 NRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVD-TK-IQYSGFVFLLDWNQTSI-YAS---PTL 113 (167)
Q Consensus 40 ~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~-~~~~g~v~I~D~~g~~~-~~~---~~~ 113 (167)
++...+++|+|++||||+++|++++++++.+.+++.++.++++|.+++. ++ .+.+|+++|+|++|+++ +++ ++.
T Consensus 5 ~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~ 84 (159)
T PF00650_consen 5 KSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISF 84 (159)
T ss_dssp TTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHH
T ss_pred CCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhh
Confidence 3444678899999999999999999999999999999999999999854 33 68999999999999994 555 889
Q ss_pred HHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457 114 LRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 114 ~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
+|.+++++|++||+|++++|++|+|++++.+|++++|||+++|++||+++++
T Consensus 85 ~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~ 136 (159)
T PF00650_consen 85 LKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSG 136 (159)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECT
T ss_pred hhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECC
Confidence 9999999999999999999999999999999999999999999999999954
No 3
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.97 E-value=1.7e-29 Score=176.37 Aligned_cols=127 Identities=30% Similarity=0.488 Sum_probs=117.1
Q ss_pred HhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhc--cCcceecEEEEEecCCCc-cccCHHHH
Q psy5457 38 LRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVD--TKIQYSGFVFLLDWNQTS-IYASPTLL 114 (167)
Q Consensus 38 l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~g~v~I~D~~g~~-~~~~~~~~ 114 (167)
++..+..+. |+|++||||+++++++++++..+.++++++.++.+|.++++ ++.+++|+++|+|++|++ .+++++.+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~l 83 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVL 83 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHH
Confidence 344444444 89999999999999999999999999999999999999986 667899999999999998 57889999
Q ss_pred HHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457 115 RTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 115 k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
|++++.+|++||+|++++||+|+|++++++|+++++|+++++++||+++++
T Consensus 84 k~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~ 134 (158)
T smart00516 84 RKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN 134 (158)
T ss_pred HHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC
Confidence 999999999999999999999999999999999999999999999999985
No 4
>KOG1471|consensus
Probab=99.96 E-value=3.3e-29 Score=193.30 Aligned_cols=157 Identities=32% Similarity=0.517 Sum_probs=128.0
Q ss_pred CChHHHHHHHHHHHHHHhhC--CCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCC----------
Q psy5457 1 MNPETSVDLLENYIHFRKTH--PEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL---------- 68 (167)
Q Consensus 1 f~v~~A~~~l~~~~~~R~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~---------- 68 (167)
||+++|++++.+++.||.++ ++++.+.+.. .+. ....+...+|.|++|+|+++.+.|..+...
T Consensus 57 f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~----~~~-~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~ 131 (317)
T KOG1471|consen 57 FDVEKAKQMLKRYLNWRKRNKLDEIFEDFEED----DEL-LKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDY 131 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCccHhhccccc----hhh-hhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHH
Confidence 79999999999999999985 5776652221 122 224445667999999999999999987653
Q ss_pred --CCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc----ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHH
Q psy5457 69 --FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVD 142 (167)
Q Consensus 69 --~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~----~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~ 142 (167)
....+..+...+.+|....+.+.+++|++.|+|++|+++ +..++.+++++..+|++||++++++||||+|++|+
T Consensus 132 ~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~ 211 (317)
T KOG1471|consen 132 LKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFS 211 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHH
Confidence 234445555556666666666678999999999999983 46788999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHhcceeE
Q psy5457 143 VLLALVKPFLKEKTRDKVGA 162 (167)
Q Consensus 143 ~~~~~~k~fl~~k~~~ki~~ 162 (167)
++|+++||||+++|++||++
T Consensus 212 ~~~~~ikpfL~~kt~~ki~~ 231 (317)
T KOG1471|consen 212 ALWKVVKPFLDEKTRKKIHV 231 (317)
T ss_pred HHHHHHhccCCHHHHhhhee
Confidence 99999999999999999993
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.94 E-value=3e-26 Score=158.94 Aligned_cols=124 Identities=36% Similarity=0.549 Sum_probs=110.1
Q ss_pred CCccCCCCCCCCCEEEEEecCCcCCCC-CCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc-cc--CHHHHHHH
Q psy5457 42 FPGVLPDRDRNGRCVLFLSLRNWSSHL-FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI-YA--SPTLLRTM 117 (167)
Q Consensus 42 ~~~~l~g~d~~Gr~V~~~r~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~-~~--~~~~~k~~ 117 (167)
.+....|+|++||||++++.++.++.. .+.++.+++.++.+|.++.++..+.+|+++|+|++|+++ ++ +++.+|++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 334555689999999999999655543 345999999999999999987776789999999999994 44 77889999
Q ss_pred HHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 118 ~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
++.++++||++++++|++|+|++++.+|+++++|+++++++||+++++
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~ 136 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGS 136 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.45 E-value=1.8e-13 Score=94.79 Aligned_cols=115 Identities=23% Similarity=0.301 Sum_probs=81.9
Q ss_pred CCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc--ccCHHHHHHHHHHhhh
Q psy5457 46 LPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI--YASPTLLRTMISGLQD 123 (167)
Q Consensus 46 l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~--~~~~~~~k~~~~~~~~ 123 (167)
..|+|++||||+++..... ++.. ++-+...|++..+... ....++++|+|++|.+. ..+.+.++++.+.++.
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~~---~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~ 79 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSSD---DLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPR 79 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-TT---HHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-H
T ss_pred ecccCCCcCEEEEEECCcC-cchh---hHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCccccCCchHHHHHHHHHHHH
Confidence 3489999999999997777 4333 6666666666655332 22466999999999984 3466789999999999
Q ss_pred cccceeeeEEEEeCchHHHHHH-HHHHhhhhHHH-hcceeEeecC
Q psy5457 124 CYPARFKAIHFINEPVQVDVLL-ALVKPFLKEKT-RDKVGAVLTM 166 (167)
Q Consensus 124 ~yP~rl~~i~ivn~p~~~~~~~-~~~k~fl~~k~-~~ki~~~~~~ 166 (167)
.|+.+++++|++|++++++.+. .+.+++.+++. ..|+..+++.
T Consensus 80 ~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl 124 (149)
T PF13716_consen 80 KYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSL 124 (149)
T ss_dssp HHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESST
T ss_pred HHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCH
Confidence 9999999999999999999999 66688889998 9999988764
No 7
>KOG4406|consensus
Probab=98.66 E-value=5.2e-07 Score=70.55 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=96.1
Q ss_pred CCCCHHHHHHHhh--cCCccCCC-CCCCCCEEEEEecCCcCCC-CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecC
Q psy5457 28 SLKDPYVQICLRN--RFPGVLPD-RDRNGRCVLFLSLRNWSSH-LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN 103 (167)
Q Consensus 28 ~~~~~~~~~~l~~--~~~~~l~g-~d~~Gr~V~~~r~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~ 103 (167)
.|.+..+...++. +......+ .|++||.|+++-..++.+. +.+-..++++.++.+|..++.. .+.++=-.
T Consensus 65 ~p~ed~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~D------Yt~vYfh~ 138 (467)
T KOG4406|consen 65 EPKEDPFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVEND------YTLVYFHH 138 (467)
T ss_pred CcccccHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhcc------ceeeehhc
Confidence 3444445555544 55555544 6999999999988887543 2333338899999999887754 55555566
Q ss_pred CCcc--ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeec
Q psy5457 104 QTSI--YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 104 g~~~--~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
|+.+ +-..+.+.+...-+..+|--.++.+|+|++-|+..++|+.+|||+|.|..+||+-+++
T Consensus 139 gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~ 202 (467)
T KOG4406|consen 139 GLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS 202 (467)
T ss_pred CCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh
Confidence 6653 2233555555555666788899999999999999999999999999999999987764
No 8
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=75.19 E-value=16 Score=23.04 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecC-CCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHH
Q psy5457 68 LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWN-QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLA 146 (167)
Q Consensus 68 ~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~-g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~ 146 (167)
..+.+++.+ ..-.++..+.+ ...+-+++|++ ++. .+++.......++... ....++++-+|-.+.+...+.+
T Consensus 10 ~~t~ed~~~-~~~~~~~~~~~----~~~~~ll~d~~~~~~-~~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~~ 82 (109)
T PF11964_consen 10 KLTEEDYKE-LLPALEELIAD----HGKIRLLVDLRRDFE-GWSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIAN 82 (109)
T ss_dssp EE-HHHHHH-HHHHHHHHHTT----SSSEEEEEEEC-CEE-EEHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHHH
T ss_pred eeCHHHHHH-HHHHHHHHHhc----CCceEEEEEecCccC-CCCHHHHHHHHHhchh-hhcccCEEEEEECcHHHHHHHH
Confidence 346677777 44444444432 24488899998 764 2344455555544444 8888999999999999999999
Q ss_pred HHHhh
Q psy5457 147 LVKPF 151 (167)
Q Consensus 147 ~~k~f 151 (167)
++.++
T Consensus 83 ~~~~~ 87 (109)
T PF11964_consen 83 FFAAF 87 (109)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99886
No 9
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=73.03 E-value=17 Score=21.62 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=35.0
Q ss_pred ecEEEEEecCCCccccCHHHHHHHHHHhhhccc--ceeeeEEEEeCchHHHHHHH
Q psy5457 94 SGFVFLLDWNQTSIYASPTLLRTMISGLQDCYP--ARFKAIHFINEPVQVDVLLA 146 (167)
Q Consensus 94 ~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP--~rl~~i~ivn~p~~~~~~~~ 146 (167)
.|-.+++|++|+.. ++.+++-..+.-+...|| +--+++.++|++.....+.+
T Consensus 16 ~~~~V~lDF~gv~~-~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 16 EGEKVVLDFEGVES-ITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred cCCeEEEECCCccc-ccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 34448899999953 566666666666666666 44567888888876655443
No 10
>KOG1534|consensus
Probab=70.43 E-value=28 Score=25.97 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=44.0
Q ss_pred HHHHHHHHhh------ccCcceecEEEEEecCCCc-cccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHH
Q psy5457 78 LLLLMDSLLV------DTKIQYSGFVFLLDWNQTS-IYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVD 142 (167)
Q Consensus 78 ~~~~~e~~~~------~~~~~~~g~v~I~D~~g~~-~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~ 142 (167)
++|++|..+. ++.+..++--+|+|+-|=- ...-...++++++-++. .-.++-.+|++.++++.+
T Consensus 75 Lv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD 145 (273)
T KOG1534|consen 75 LVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVD 145 (273)
T ss_pred chhHHHHHHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhc-ccCceeEEEEeccchhhh
Confidence 4566666543 2334478888999999864 32223468999999987 667888888888775544
No 11
>PRK02399 hypothetical protein; Provisional
Probab=67.74 E-value=66 Score=26.20 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc-------ccCHHHHHHHHHHhhhcccceeeeEEE-----E
Q psy5457 68 LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI-------YASPTLLRTMISGLQDCYPARFKAIHF-----I 135 (167)
Q Consensus 68 ~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~-------~~~~~~~k~~~~~~~~~yP~rl~~i~i-----v 135 (167)
+.+++|..+..-++-|.+-.. ..-+.+++=++|+|+ .+||..-..+++.+++..+..+. .+ |
T Consensus 312 RTt~eE~~~~g~~ia~kLn~a----~gpv~vllP~~G~S~~D~~G~~f~Dpead~alf~~l~~~l~~~~~--v~~~~~hI 385 (406)
T PRK02399 312 RTTPEENRQIGRWIAEKLNRA----KGPVAFLIPLGGVSALDRPGQPFHDPEADAAFFDALEETVTETRR--LIEVPAHI 385 (406)
T ss_pred ecCHHHHHHHHHHHHHHHhcC----CCCeEEEEeCCCCccccCCCCCccChhHHHHHHHHHHHhCCCCce--EEECCCCC
Confidence 458899988888888876332 233889999999983 26998888899999999977755 55 7
Q ss_pred eCchHHHHHHHHHHhhhhH
Q psy5457 136 NEPVQVDVLLALVKPFLKE 154 (167)
Q Consensus 136 n~p~~~~~~~~~~k~fl~~ 154 (167)
|.|.|...+...+..++..
T Consensus 386 ND~~FA~a~~~~l~~~~~~ 404 (406)
T PRK02399 386 NDPEFAEAAVEAFEELMAR 404 (406)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999988887666553
No 12
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=65.42 E-value=25 Score=23.54 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=29.9
Q ss_pred ecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHh
Q psy5457 94 SGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 150 (167)
Q Consensus 94 ~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~ 150 (167)
+|++++.|+ |-+ |...-..++.+.+ - ++++++++|-+=..+-..+..
T Consensus 58 dGVlVltDL-Gss----p~n~~~a~e~~~~----~-~~v~~~daPlVEGa~~Aav~~ 104 (124)
T PRK14484 58 DGVLIFFDL-GSA----EMNAEMAIEMLDG----E-KKIIIIDAPIVEGAFTAAVLL 104 (124)
T ss_pred CCeEEEEeC-CCh----HHHHHHHHHhcCC----C-CcEEEECCcHHHHHHHHHHHH
Confidence 899999999 533 2222233444432 2 889999999776655555543
No 13
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=61.84 E-value=45 Score=22.24 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=35.2
Q ss_pred eecEEEEEecCCCc-cccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhh
Q psy5457 93 YSGFVFLLDWNQTS-IYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLK 153 (167)
Q Consensus 93 ~~g~v~I~D~~g~~-~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~ 153 (167)
-+|++++.|+ |-+ ++. ...+.+++ ++..+.+..+|.|-+-..+-..+..-..
T Consensus 59 ~dgVlvl~DL-Ggs~~n~-----e~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~~g 111 (125)
T TIGR02364 59 ADGVLIFYDL-GSAVMNA-----EMAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQVG 111 (125)
T ss_pred CCCEEEEEcC-CCcHhHH-----HHHHHHhc---cccccEEEEechhHHHHHHHHHHHHcCC
Confidence 4789999999 533 222 12344443 3555789999999999888877765443
No 14
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=56.12 E-value=12 Score=28.21 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=23.9
Q ss_pred ccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhc
Q psy5457 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTRD 158 (167)
Q Consensus 125 yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ 158 (167)
.-..=.+++|||+||-+.-..+-+-|+|.+.+..
T Consensus 201 ~gm~GSGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 201 RGMNGSGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp -S--EEEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred CceecceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 4444568999999999999999888888876554
No 15
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=54.02 E-value=16 Score=27.67 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=25.2
Q ss_pred eeeeEEEEeCchHHHHHHHHHHhhhhHHHh
Q psy5457 128 RFKAIHFINEPVQVDVLLALVKPFLKEKTR 157 (167)
Q Consensus 128 rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~ 157 (167)
.=.++++||+||-+.--...+-|+|...+.
T Consensus 235 ~gSGMivINPPwtle~ql~~~LP~L~~~L~ 264 (279)
T COG2961 235 NGSGMIVINPPWTLEQQLRAALPWLTTLLA 264 (279)
T ss_pred cceeEEEECCCccHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999887654
No 16
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=44.20 E-value=68 Score=19.52 Aligned_cols=38 Identities=21% Similarity=0.503 Sum_probs=26.1
Q ss_pred eecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEe
Q psy5457 93 YSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFIN 136 (167)
Q Consensus 93 ~~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn 136 (167)
.+|..+|.|... +|.-++.+++.+++.+|.+ +.+.|+-
T Consensus 11 ~~~~~vi~D~ah-----Np~s~~a~l~~l~~~~~~~-~~i~V~G 48 (91)
T PF02875_consen 11 PNGPTVIDDYAH-----NPDSIRALLEALKELYPKG-RIIAVFG 48 (91)
T ss_dssp ETTEEEEEET-------SHHHHHHHHHHHHHHCTTS-EEEEEEE
T ss_pred CCCcEEEEECCC-----CHHHHHHHHHHHHHhccCC-cEEEEEc
Confidence 357899999444 7888899999998888832 2344444
No 17
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=43.95 E-value=57 Score=20.76 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=33.2
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLA 146 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~ 146 (167)
-.+|+||++++. +|.+.+..+.++.++.- .+=..++++|.+.-..-.+.
T Consensus 49 ~~vIlD~s~v~~-iDssgi~~L~~~~~~~~-~~g~~~~l~~~~~~v~~~l~ 97 (117)
T PF01740_consen 49 KNVILDMSGVSF-IDSSGIQALVDIIKELR-RRGVQLVLVGLNPDVRRILE 97 (117)
T ss_dssp SEEEEEETTESE-ESHHHHHHHHHHHHHHH-HTTCEEEEESHHHHHHHHHH
T ss_pred eEEEEEEEeCCc-CCHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHH
Confidence 689999999862 45555555555554433 45667999999877766544
No 18
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=39.89 E-value=49 Score=19.15 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=24.4
Q ss_pred CCCCCCCHHHHHHHhhcCCccCCC-CCCCCCEE
Q psy5457 25 GQLSLKDPYVQICLRNRFPGVLPD-RDRNGRCV 56 (167)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~l~g-~d~~Gr~V 56 (167)
....+++.++.++++.|....+.| .++.|++-
T Consensus 12 ~gk~lt~~~~~~Ll~~gkT~~ikGF~SK~Gk~F 44 (62)
T PF13342_consen 12 AGKKLTDEEVKELLEKGKTGLIKGFKSKKGKPF 44 (62)
T ss_pred cCCCCCHHHHHHHHHcCCccCccCcccCCCCEE
Confidence 345677888999999998777776 56788863
No 19
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=37.77 E-value=96 Score=20.52 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=28.7
Q ss_pred CCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEe
Q psy5457 49 RDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLD 101 (167)
Q Consensus 49 ~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D 101 (167)
.|++|-||+-.-.... ++......+...+....|++-.-.-+....++..+|
T Consensus 23 tDrDGvpi~~v~~~~~-~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~ 74 (119)
T PF08923_consen 23 TDRDGVPIAKVSSDSA-PESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYD 74 (119)
T ss_dssp EETTS-EEEEEE-TTS--GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEES
T ss_pred ECCCCcEEEEecCCCC-cchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeC
Confidence 6999999987654443 333333566666778888876533222333444444
No 20
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=37.00 E-value=1.6e+02 Score=21.23 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=38.9
Q ss_pred EEEEEecCCCc-ccc-CHHHHHHHHHHhhhcccceeeeEEEEeCchH---HHHHHHHHHhhhhHHHhcceeEeec
Q psy5457 96 FVFLLDWNQTS-IYA-SPTLLRTMISGLQDCYPARFKAIHFINEPVQ---VDVLLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 96 ~v~I~D~~g~~-~~~-~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~---~~~~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
-+.|+|.-|+. ... +....+.+.+++..+.|.----+++++...+ -..++..++..++++..+.+.++-|
T Consensus 50 ~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT 124 (212)
T PF04548_consen 50 QVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFT 124 (212)
T ss_dssp EEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred EEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhh
Confidence 56678888775 222 2344556666666666644444555555544 3456666666667777777666543
No 21
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=36.49 E-value=1e+02 Score=18.86 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=33.6
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|+++++. +|.+.+..+..+.+. +-.+=..+.+.|.+.-..-++...
T Consensus 42 ~~lilD~~~v~~-iDss~~~~L~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~~ 92 (107)
T cd07042 42 KVVILDLSAVNF-IDSTAAEALEELVKD-LRKRGVELYLAGLNPQVRELLERA 92 (107)
T ss_pred eEEEEECCCCch-hhHHHHHHHHHHHHH-HHHCCCEEEEecCCHHHHHHHHHc
Confidence 567899999863 466556655555543 334457889999998665555443
No 22
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.08 E-value=1.2e+02 Score=21.62 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=40.3
Q ss_pred EEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhcceeEeecCC
Q psy5457 99 LLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKVGAVLTML 167 (167)
Q Consensus 99 I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ki~~~~~~~ 167 (167)
|+=+.|+.+.-.....+.+-+.+.++.|.. .+...+.|....-+...+...+.+...+.+.+++|+|
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~--~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSl 68 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDI--QYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSL 68 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCc--eEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEECh
Confidence 344556654221122333444555555553 4556677777777788888887777666688888775
No 23
>KOG0534|consensus
Probab=36.03 E-value=26 Score=27.08 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHHhc
Q psy5457 113 LLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRD 158 (167)
Q Consensus 113 ~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~~ 158 (167)
.+|+-+..++..||+|++.-+.++.|. -.|+.-.+|++++...
T Consensus 201 Llr~eL~~la~~~p~rf~~~y~v~~~~---~~w~~~~g~It~~~i~ 243 (286)
T KOG0534|consen 201 LLREELEELASKYPERFKVWYVVDQPP---EIWDGSVGFITKDLIK 243 (286)
T ss_pred chHHHHHHHHhhCcceEEEEEEEcCCc---ccccCccCccCHHHHH
Confidence 588889999999999999999999998 6788777888777654
No 24
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=33.40 E-value=74 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhhcCCccCCCCCCCCCEEEEE
Q psy5457 28 SLKDPYVQICLRNRFPGVLPDRDRNGRCVLFL 59 (167)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~ 59 (167)
.++.++...+++.-..+..|..+++|||+++-
T Consensus 573 ~Ls~~E~~~Ll~~L~~~~~P~~CPHGRPt~i~ 604 (617)
T PRK00095 573 RLTLEEMNALLRQLEATENPGTCPHGRPTYIE 604 (617)
T ss_pred CCCHHHHHHHHHHHHhcccccCCCCCCeeEEE
Confidence 46677788888766666778899999999863
No 25
>KOG1838|consensus
Probab=32.90 E-value=2.8e+02 Score=22.77 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=56.8
Q ss_pred CCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceec-EEEEEecCCCc-cc---------cCHHHHHHHHHH
Q psy5457 52 NGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSG-FVFLLDWNQTS-IY---------ASPTLLRTMISG 120 (167)
Q Consensus 52 ~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g-~v~I~D~~g~~-~~---------~~~~~~k~~~~~ 120 (167)
...|++++=+|--. .+.+.++|+.+.... ..| -++|+.-+|+. .. -+...++.+++.
T Consensus 123 ~~~P~vvilpGltg---~S~~~YVr~lv~~a~---------~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~ 190 (409)
T KOG1838|consen 123 GTDPIVVILPGLTG---GSHESYVRHLVHEAQ---------RKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNH 190 (409)
T ss_pred CCCcEEEEecCCCC---CChhHHHHHHHHHHH---------hCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHH
Confidence 45688888887543 356678887765433 233 68899999974 11 245689999999
Q ss_pred hhhcccceeeeEEEEeCchHHHHHHH
Q psy5457 121 LQDCYPARFKAIHFINEPVQVDVLLA 146 (167)
Q Consensus 121 ~~~~yP~rl~~i~ivn~p~~~~~~~~ 146 (167)
+...||.+ .++.+.-+.=.++++|
T Consensus 191 i~~~~P~a--~l~avG~S~Gg~iL~n 214 (409)
T KOG1838|consen 191 IKKRYPQA--PLFAVGFSMGGNILTN 214 (409)
T ss_pred HHHhCCCC--ceEEEEecchHHHHHH
Confidence 99999998 6777776665555554
No 26
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=32.30 E-value=1.2e+02 Score=18.26 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=33.4
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+++|+++++. +|...+..+.++.+..- .+=..+.+.+.|.-..-++..+
T Consensus 39 ~~viid~~~v~~-iDs~g~~~L~~l~~~~~-~~g~~v~i~~~~~~~~~~l~~~ 89 (99)
T cd07043 39 RRLVLDLSGVTF-IDSSGLGVLLGAYKRAR-AAGGRLVLVNVSPAVRRVLELT 89 (99)
T ss_pred CEEEEECCCCCE-EcchhHHHHHHHHHHHH-HcCCeEEEEcCCHHHHHHHHHh
Confidence 567899999763 45444555555554433 4456799999997776666654
No 27
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=31.34 E-value=1.3e+02 Score=18.64 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=31.5
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+++||++++. +|.+.+..+....+. .-.+=.+++++|.+.-..-++...
T Consensus 40 ~~vilDls~v~~-iDssgi~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 90 (106)
T TIGR02886 40 KHLILNLKNVTF-MDSSGLGVILGRYKK-IKNEGGEVIVCNVSPAVKRLFELS 90 (106)
T ss_pred CEEEEECCCCcE-ecchHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHh
Confidence 479999999873 233333333333322 223557899999988777666543
No 28
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=30.86 E-value=76 Score=17.11 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=20.0
Q ss_pred CCCCCCCCCEEEEEe-cCCcCCCCCCHHHHH
Q psy5457 46 LPDRDRNGRCVLFLS-LRNWSSHLFSLEAIF 75 (167)
Q Consensus 46 l~g~d~~Gr~V~~~r-~~~~~~~~~~~~~~~ 75 (167)
-.|.|.+|.|++=.+ +++..++ .+.++++
T Consensus 13 ~~G~d~~Gkpi~k~ks~~nvk~~-Atdedl~ 42 (47)
T PF07872_consen 13 QTGVDENGKPIFKTKSFSNVKPD-ATDEDLY 42 (47)
T ss_pred EcccCCCCCEEEEeeehhhcCCC-CCHHHHH
Confidence 349999999998877 5566654 3444544
No 29
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=30.76 E-value=1.2e+02 Score=21.54 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEe
Q psy5457 4 ETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLS 60 (167)
Q Consensus 4 ~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r 60 (167)
+.|...+++.+..|...+. |.+..+.++.+.++++.+...+. +...+-..+++++
T Consensus 3 ~~~~~~~~~~i~~RrSvR~-f~~~~I~~e~l~~ileaa~~APS-~~N~QPw~fvvv~ 57 (195)
T PRK05365 3 ALDDAALDQLFTEARTHNG-WLDEPVSDEQLRELYDLVKWGPT-SANCSPARFVFVR 57 (195)
T ss_pred CCCHHHHHHHHHhCccccc-CCCCCCCHHHHHHHHHHHHhCCC-cCCCCCeEEEEEe
Confidence 3566778899999999876 44446778888999988876554 4445555555554
No 30
>KOG4178|consensus
Probab=29.24 E-value=2.9e+02 Score=21.85 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=45.6
Q ss_pred CCCCCCCEEEEEecCCcCCC-------CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCccccCHHHHHHHHHH
Q psy5457 48 DRDRNGRCVLFLSLRNWSSH-------LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISG 120 (167)
Q Consensus 48 g~d~~Gr~V~~~r~~~~~~~-------~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~~~~~~~~k~~~~~ 120 (167)
+....|.+|+...++-+..+ .++...+..-...+++.+-. ..=.++..|..++ +...
T Consensus 66 ~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~Lg~-----~k~~lvgHDwGai-----------vaw~ 129 (322)
T KOG4178|consen 66 GLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHLGL-----KKAFLVGHDWGAI-----------VAWR 129 (322)
T ss_pred hhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHhcc-----ceeEEEeccchhH-----------HHHH
Confidence 33444666766666543322 34555555555555554331 1124555565553 2233
Q ss_pred hhhcccceeeeEEEEeCchH
Q psy5457 121 LQDCYPARFKAIHFINEPVQ 140 (167)
Q Consensus 121 ~~~~yP~rl~~i~ivn~p~~ 140 (167)
+.-.||+|+.++..+|.|..
T Consensus 130 la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 130 LALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred HHHhChhhcceEEEecCCCC
Confidence 45679999999999999987
No 31
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=28.98 E-value=1.5e+02 Score=18.38 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=31.1
Q ss_pred cEEEEEecCCCcc--ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 95 GFVFLLDWNQTSI--YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 95 g~v~I~D~~g~~~--~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
.-.+++|+++++. ..-...+..+.+.++ ++=..+.+++.+.-..-++...
T Consensus 43 ~~~vvidls~v~~iDssgl~~L~~~~~~~~----~~~~~~~l~~~~~~~~~~l~~~ 94 (108)
T TIGR00377 43 PRPIVLDLEDLEFMDSSGLGVLLGRYKQVR----RVGGQLVLVSVSPRVARLLDIT 94 (108)
T ss_pred CCeEEEECCCCeEEccccHHHHHHHHHHHH----hcCCEEEEEeCCHHHHHHHHHh
Confidence 3569999999872 122334444444443 2346789999887777666544
No 32
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=28.70 E-value=64 Score=22.35 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcccceee--eEEEEeCchHHHHHHHHHHhhhhH
Q psy5457 114 LRTMISGLQDCYPARFK--AIHFINEPVQVDVLLALVKPFLKE 154 (167)
Q Consensus 114 ~k~~~~~~~~~yP~rl~--~i~ivn~p~~~~~~~~~~k~fl~~ 154 (167)
.+.+++.+-.+||.-++ ..-+.|+.-.|..+|+-+ |-++.
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~ 58 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSN 58 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCch
Confidence 56789999999999999 999999999999999765 44555
No 33
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=26.58 E-value=3.6e+02 Score=22.08 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc-------ccCHHHHHHHHHHhhhcccc-eeeeE---EEEe
Q psy5457 68 LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI-------YASPTLLRTMISGLQDCYPA-RFKAI---HFIN 136 (167)
Q Consensus 68 ~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~-------~~~~~~~k~~~~~~~~~yP~-rl~~i---~ivn 136 (167)
+.+++|..+..-++-|.+-+. ..-+.+++=++|+|+ .+||..-..+++.+++..+. .+.-+ +=||
T Consensus 311 Rtt~eE~~~~g~~ia~kLn~~----~gpv~v~lP~~G~S~~d~~G~~f~Dpead~al~~~l~~~l~~~~i~v~~~~~hIN 386 (403)
T PF06792_consen 311 RTTPEENRQLGEFIAEKLNRA----KGPVRVLLPLGGVSALDRPGGPFYDPEADEALFDALRENLDGSGIEVIEVDAHIN 386 (403)
T ss_pred eCCHHHHHHHHHHHHHHHhcC----CCCEEEEECCCCCcccCCCCCcCcChhHHHHHHHHHHHhCCCCCcEEEECCCCCC
Confidence 468999999998888876653 233899999999983 37898888899999998888 33222 1259
Q ss_pred CchHHHHHHHHHHhhh
Q psy5457 137 EPVQVDVLLALVKPFL 152 (167)
Q Consensus 137 ~p~~~~~~~~~~k~fl 152 (167)
.|.|...+...+.-++
T Consensus 387 D~~FA~~~~~~l~~~~ 402 (403)
T PF06792_consen 387 DPEFADAAAEALLELM 402 (403)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999988877665543
No 34
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=26.56 E-value=65 Score=23.41 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=22.8
Q ss_pred ecEEEEEecCCCccccCHHHHHHHHHHhh
Q psy5457 94 SGFVFLLDWNQTSIYASPTLLRTMISGLQ 122 (167)
Q Consensus 94 ~g~v~I~D~~g~~~~~~~~~~k~~~~~~~ 122 (167)
.+=++|+|+...|++-.|+.+++.++.+-
T Consensus 142 ~~~~~iIDFd~At~k~~p~N~Tq~~slL~ 170 (201)
T COG2112 142 DRDVYIIDFDSATFKKKPRNVTQALSLLF 170 (201)
T ss_pred CCcEEEEEccchhhccCCchHHHHHHHHH
Confidence 34799999999998777877777766654
No 35
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=26.10 E-value=71 Score=20.25 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhhHHHhcceeE
Q psy5457 142 DVLLALVKPFLKEKTRDKVGA 162 (167)
Q Consensus 142 ~~~~~~~k~fl~~k~~~ki~~ 162 (167)
.++|+.++-+|+++..++|.=
T Consensus 32 ~y~~~~L~~~L~e~~~~~v~~ 52 (97)
T PF08152_consen 32 GYAWRILRRQLSEEIADKVKG 52 (97)
T ss_dssp HHHHHHHHHHS-HHHHTT-EE
T ss_pred hhHHHHHHHhcCHHHHHhhCc
Confidence 468999999999999888763
No 36
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=25.32 E-value=2e+02 Score=24.59 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCch
Q psy5457 69 FSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPV 139 (167)
Q Consensus 69 ~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~ 139 (167)
-+.+++.+...-.+|......+. ...-++|-+|+| ++ ..-++...+|+.++-+.+-.+|-
T Consensus 116 QTl~DV~~ae~~Fv~~V~~~hp~-~~kp~liGnCQg-GW---------a~~mlAA~~Pd~~gplvlaGaPl 175 (581)
T PF11339_consen 116 QTLEDVMRAEAAFVEEVAERHPD-APKPNLIGNCQG-GW---------AAMMLAALRPDLVGPLVLAGAPL 175 (581)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCC-CCCceEEeccHH-HH---------HHHHHHhcCcCccCceeecCCCc
Confidence 47888888777777766554322 236788888775 21 11134455777777766666663
No 37
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=25.14 E-value=43 Score=17.30 Aligned_cols=11 Identities=64% Similarity=1.105 Sum_probs=7.3
Q ss_pred CCCCCCEEEEE
Q psy5457 49 RDRNGRCVLFL 59 (167)
Q Consensus 49 ~d~~Gr~V~~~ 59 (167)
+|.+||.|.+.
T Consensus 21 ~D~~gRTiWFq 31 (39)
T PF09292_consen 21 RDRNGRTIWFQ 31 (39)
T ss_dssp E-TTS-EEEES
T ss_pred cccCCCEEEee
Confidence 89999998763
No 38
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=24.51 E-value=2.2e+02 Score=18.91 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=28.5
Q ss_pred eEEEEeCchHHHHHHHHH-----HhhhhHHHhcceeEeec
Q psy5457 131 AIHFINEPVQVDVLLALV-----KPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 131 ~i~ivn~p~~~~~~~~~~-----k~fl~~k~~~ki~~~~~ 165 (167)
-+.++|..-+++.+++.+ ..|++++..+.+.++.+
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~ 125 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDD 125 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESS
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCC
Confidence 589999988888888876 57888888888888765
No 39
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.32 E-value=63 Score=22.37 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=12.0
Q ss_pred CCCCCCCEEEEEecC
Q psy5457 48 DRDRNGRCVLFLSLR 62 (167)
Q Consensus 48 g~d~~Gr~V~~~r~~ 62 (167)
.-.=+||||+++++.
T Consensus 31 en~INGRPI~l~~L~ 45 (149)
T cd07268 31 ENEINGRPIALIKLE 45 (149)
T ss_pred ccccCCeeEEEEEcC
Confidence 445689999999984
No 40
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=22.73 E-value=72 Score=17.77 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.1
Q ss_pred ccCCCCCCCCCEEEEEecC
Q psy5457 44 GVLPDRDRNGRCVLFLSLR 62 (167)
Q Consensus 44 ~~l~g~d~~Gr~V~~~r~~ 62 (167)
+.+.|..++||+++...+-
T Consensus 40 fvlcgetpdgrrlvlthmi 58 (66)
T PF13082_consen 40 FVLCGETPDGRRLVLTHMI 58 (66)
T ss_pred EEEEccCCCCcEEEEEEEe
Confidence 3567999999999887753
No 41
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=70 Score=21.98 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCccccCHHHHHH
Q psy5457 37 CLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRT 116 (167)
Q Consensus 37 ~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~~~~~~~~k~ 116 (167)
+++.|-.. + ..|++||||.+.-..-+|.. ..+++++-. ..+..++-..+.-+.|+|+-. +.+..+.
T Consensus 48 alk~~Qf~-l-y~de~g~Piaf~~WA~vde~--~e~~lL~~~-----~~l~p~dW~SG~~iwii~~iA-----PfGh~r~ 113 (148)
T COG2994 48 ALKLGQFA-L-YFDEHGRPIAFCTWAFVDEQ--AEEELLEND-----RNLSPEDWASGNNIWIIDWIA-----PFGHSRQ 113 (148)
T ss_pred HHhcCceE-E-EEcCCCCeeEEEEEeecCHH--HHHHHHhCC-----CCCChhhccCCCeeEEEEEEc-----cCCchHH
Confidence 44555432 2 56899999999998776643 222222110 111111111344677777532 2233444
Q ss_pred HH-HHhhhcccceeee
Q psy5457 117 MI-SGLQDCYPARFKA 131 (167)
Q Consensus 117 ~~-~~~~~~yP~rl~~ 131 (167)
+. ++.+..||.+..+
T Consensus 114 ~~~dl~~~lFp~~~vr 129 (148)
T COG2994 114 MVKDLHRNLFPDRTVR 129 (148)
T ss_pred HHHHHHHHhCchhhhh
Confidence 44 6778888887544
No 42
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=22.02 E-value=1.3e+02 Score=15.21 Aligned_cols=25 Identities=0% Similarity=-0.049 Sum_probs=15.6
Q ss_pred EEEEEecCCcCCCCCCHHHHHHHHH
Q psy5457 55 CVLFLSLRNWSSHLFSLEAIFKSLL 79 (167)
Q Consensus 55 ~V~~~r~~~~~~~~~~~~~~~~~~~ 79 (167)
+|.++..++-||++.+..++.++-.
T Consensus 2 rlav~d~~~CdPkKCt~~kl~r~~~ 26 (35)
T PF04068_consen 2 RLAVWDFDQCDPKKCTGKKLIRFCP 26 (35)
T ss_dssp EEEEE-CCC--CCCCSS-HHHHH-H
T ss_pred EEEEEEcCCCCccccCHHHHHhcCC
Confidence 5778888899999988877776653
No 43
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=21.57 E-value=1.6e+02 Score=25.65 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEe
Q psy5457 9 LLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLS 60 (167)
Q Consensus 9 ~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r 60 (167)
.....+.|..-...+..++..+.+++..+++.-..+..|+..++|||+++.-
T Consensus 575 ~~~~~~a~~aC~~svk~~~~l~~~~m~~Ll~~~~~~~~~~~cpHGRp~~~~~ 626 (638)
T COG0323 575 LLEELAATMACRSAVKAGRELSAEEMNALLRDLEACPNPWTCPHGRPTYIVL 626 (638)
T ss_pred HHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHhCCCccCCCCCCCceEee
Confidence 4455555555544444455566677777777666566678999999987653
No 44
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.37 E-value=2.1e+02 Score=17.58 Aligned_cols=51 Identities=8% Similarity=-0.034 Sum_probs=34.3
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|+++++. +|.+.+..+..+.++ +-.+=..++++|.+.-..-++...
T Consensus 40 ~~vilDls~v~~-iDssgl~~L~~l~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 90 (100)
T cd06844 40 KTIVIDISALEF-MDSSGTGVLLERSRL-AEAVGGQFVLTGISPAVRITLTES 90 (100)
T ss_pred CEEEEECCCCcE-EcHHHHHHHHHHHHH-HHHcCCEEEEECCCHHHHHHHHHh
Confidence 589999998873 355555555554433 334567899999988777666544
No 45
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=20.87 E-value=98 Score=18.34 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=13.8
Q ss_pred CCCCCCCCCEEEEEec
Q psy5457 46 LPDRDRNGRCVLFLSL 61 (167)
Q Consensus 46 l~g~d~~Gr~V~~~r~ 61 (167)
..|.|.+|.|+++-|.
T Consensus 18 ~~G~~~~G~~lYvgR~ 33 (71)
T smart00696 18 VGGTDSDGEPLYVGRA 33 (71)
T ss_pred EcccCCCCCEEEEEEE
Confidence 3489999999999995
No 46
>PRK11700 hypothetical protein; Provisional
Probab=20.72 E-value=74 Score=22.94 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=13.2
Q ss_pred CCCCCCCCCEEEEEecC
Q psy5457 46 LPDRDRNGRCVLFLSLR 62 (167)
Q Consensus 46 l~g~d~~Gr~V~~~r~~ 62 (167)
+..-.=+||||+++++.
T Consensus 67 lSen~INGRPI~l~~L~ 83 (187)
T PRK11700 67 LSENIINGRPICLFELD 83 (187)
T ss_pred hhccccCCeeEEEEEcC
Confidence 34556789999999984
No 47
>PRK02963 carbon starvation induced protein; Validated
Probab=20.49 E-value=4.3e+02 Score=20.83 Aligned_cols=55 Identities=18% Similarity=0.003 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcc-----eecEEEEEecCCC
Q psy5457 47 PDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQ-----YSGFVFLLDWNQT 105 (167)
Q Consensus 47 ~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----~~g~v~I~D~~g~ 105 (167)
-..|.+|++.+.+. ... ..+.++...++...+..++++++.+ ..|-++++|=.-+
T Consensus 225 I~lD~~G~l~ir~n--d~~--~~P~~~~~~~Y~~~f~~~L~~p~~~~~fkL~pGd~vvfDN~RV 284 (316)
T PRK02963 225 FDVDQQGRPVMRYI--DQF--VQPKDFEEGVWLSELSDALETSKGILSVPVPVGKFLLINNLFW 284 (316)
T ss_pred EEECCCCCEEEEEc--CCC--CCChHHHHHHHHHHHHHHHhCchhEEEEecCCceEEEEeCeEE
Confidence 36788999983332 221 2244445455555555566666543 5788888884433
No 48
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=20.11 E-value=4.9e+02 Score=21.25 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=44.9
Q ss_pred EEEEEecCCcCCCCC--CHHHHHHHHHHHHHHHhhccCcceecEEEEEec--CCCcc--ccCHHHHHHHHHHhh------
Q psy5457 55 CVLFLSLRNWSSHLF--SLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDW--NQTSI--YASPTLLRTMISGLQ------ 122 (167)
Q Consensus 55 ~V~~~r~~~~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~--~g~~~--~~~~~~~k~~~~~~~------ 122 (167)
-|++.+...|+|... +.++.....-.+- ..|++-++|+ +|+.. .-|...+|.+++...
T Consensus 173 ~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~----------~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~ 242 (396)
T COG1448 173 SVVLLHGCCHNPTGIDPTEEQWQELADLIK----------ERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVAS 242 (396)
T ss_pred CEEEEecCCCCCCCCCCCHHHHHHHHHHHH----------HcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEe
Confidence 477888888999854 4555555443333 3568889996 56642 122222333222221
Q ss_pred ------hcccceeeeEEEEeCc
Q psy5457 123 ------DCYPARFKAIHFINEP 138 (167)
Q Consensus 123 ------~~yP~rl~~i~ivn~p 138 (167)
.-|-||++..++|-..
T Consensus 243 S~SKnfgLYgERVGa~~vva~~ 264 (396)
T COG1448 243 SFSKNFGLYGERVGALSVVAED 264 (396)
T ss_pred hhhhhhhhhhhccceeEEEeCC
Confidence 4699999999999554
No 49
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=20.10 E-value=2.3e+02 Score=17.58 Aligned_cols=51 Identities=8% Similarity=-0.006 Sum_probs=34.7
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|++++.. +|.+-+..+.++.+..- .+=+++++++...-+.-++...
T Consensus 42 ~~vvlDls~v~~-iDssg~~~l~~~~~~~~-~~g~~l~l~g~~~~v~~~l~~~ 92 (109)
T cd07041 42 RGVIIDLTGVPV-IDSAVARHLLRLARALR-LLGARTILTGIRPEVAQTLVEL 92 (109)
T ss_pred CEEEEECCCCch-hcHHHHHHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHh
Confidence 479999999873 35555665665555433 4557899999887776666544
Done!