Query psy5457
Match_columns 167
No_of_seqs 146 out of 1089
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 18:02:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 2E-42 7E-47 265.5 17.9 164 1-166 104-271 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 5.1E-42 1.8E-46 256.9 14.4 163 1-165 45-211 (262)
3 1aua_A Phosphatidylinositol tr 100.0 6.8E-38 2.3E-42 238.5 12.3 162 1-165 64-242 (296)
4 1olm_A SEC14-like protein 2; l 100.0 8.2E-36 2.8E-40 235.6 13.1 159 1-165 47-222 (403)
5 3q8g_A CRAL-TRIO domain-contai 100.0 2.1E-36 7.2E-41 232.3 7.7 165 1-165 73-257 (320)
6 3pg7_A Neurofibromin; SEC lipi 99.4 8.7E-13 3E-17 97.9 7.0 123 37-166 7-132 (256)
7 3peg_A Neurofibromin; SEC14 do 99.3 7.1E-12 2.4E-16 94.4 6.8 120 40-165 28-150 (290)
8 2q3l_A Uncharacterized protein 85.9 4.6 0.00016 25.9 7.3 84 68-156 29-112 (126)
9 3kdg_A DNA mismatch repair pro 79.5 2.6 8.8E-05 29.4 4.4 49 11-59 135-183 (197)
10 3ncv_A DNA mismatch repair pro 76.8 2.5 8.4E-05 30.2 3.6 49 10-58 157-205 (220)
11 3mvn_A UDP-N-acetylmuramate:L- 52.1 27 0.00091 23.1 4.8 17 110-126 46-62 (163)
12 2oo3_A Protein involved in cat 46.3 14 0.00048 27.4 2.8 33 125-157 233-265 (283)
13 3ct6_A PTS-dependent dihydroxy 44.7 60 0.002 20.8 5.5 41 94-146 59-99 (131)
14 2ka5_A Putative anti-sigma fac 39.1 68 0.0023 19.9 5.4 51 96-148 53-103 (125)
15 1sbo_A Putative anti-sigma fac 37.4 64 0.0022 19.0 5.6 50 97-148 46-95 (110)
16 1th8_B Anti-sigma F factor ant 34.5 66 0.0023 19.2 4.3 52 96-149 44-95 (116)
17 4hyl_A Stage II sporulation pr 34.1 74 0.0025 19.2 4.6 51 97-149 44-94 (117)
18 3llo_A Prestin; STAS domain, c 32.9 93 0.0032 19.6 5.9 51 96-148 65-115 (143)
19 4dgh_A Sulfate permease family 31.9 93 0.0032 19.3 5.9 51 96-148 50-100 (130)
20 1h4x_A SPOIIAA, anti-sigma F f 28.8 83 0.0028 18.9 4.1 50 97-148 44-93 (117)
21 4dgf_A Sulfate transporter sul 28.4 1.1E+02 0.0038 19.1 5.9 51 96-148 53-103 (135)
22 3ny7_A YCHM protein, sulfate t 28.1 1.1E+02 0.0036 18.8 6.0 50 96-148 47-96 (118)
23 1kdl_A YOPD protein; yersinia, 26.6 41 0.0014 15.0 1.6 15 113-127 3-17 (26)
24 3t6o_A Sulfate transporter/ant 23.5 1.3E+02 0.0045 18.2 6.0 51 96-148 49-100 (121)
25 3v22_V Ribosome modulation fac 22.5 33 0.0011 19.1 1.1 25 32-56 7-31 (61)
26 3iz6_A 40S ribosomal protein S 22.4 46 0.0016 24.8 2.1 39 97-142 50-88 (305)
27 2e29_A ATP-dependent RNA helic 21.5 62 0.0021 19.4 2.3 20 142-161 35-54 (92)
28 3b48_A Uncharacterized protein 21.3 86 0.003 20.0 3.1 45 93-145 64-108 (135)
29 3ol3_A Putative uncharacterize 20.0 70 0.0024 19.9 2.3 39 110-155 9-47 (107)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2e-42 Score=265.46 Aligned_cols=164 Identities=33% Similarity=0.609 Sum_probs=153.9
Q ss_pred CChHHHHHHHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHH
Q psy5457 1 MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLL 80 (167)
Q Consensus 1 f~v~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~ 80 (167)
||+++|+++|++|++||+++|+++.+.+ ++++.+.++.|++++++|+|++||||+++++|++|+++.+.++++|+.++
T Consensus 104 fdv~kA~~~L~~~l~wR~~~~~~~~~~~--~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~ 181 (316)
T 3hx3_A 104 FNVGRAYELLRGYVNFRLQYPELFDSLS--PEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCF 181 (316)
T ss_dssp TCHHHHHHHHHHHHHHHHHCGGGTTTCC--HHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhhcCCC--HHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHH
Confidence 8999999999999999999999887654 45678889999998999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceecEEEEEecCCCcc----ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHH
Q psy5457 81 LMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKT 156 (167)
Q Consensus 81 ~~e~~~~~~~~~~~g~v~I~D~~g~~~----~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~ 156 (167)
++|.++.+++.+++|+++|+|++|+|+ +++++.+|.+++++|++||+|++++||||+|++|+.+|+++||||+++|
T Consensus 182 ~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt 261 (316)
T 3hx3_A 182 ILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL 261 (316)
T ss_dssp HHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHH
T ss_pred HHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHh
Confidence 999999877788999999999999994 4788999999999999999999999999999999999999999999999
Q ss_pred hcceeEeecC
Q psy5457 157 RDKVGAVLTM 166 (167)
Q Consensus 157 ~~ki~~~~~~ 166 (167)
++||+++++.
T Consensus 262 ~~KI~~~~~~ 271 (316)
T 3hx3_A 262 LERVFVHGDD 271 (316)
T ss_dssp HTTEEEEETC
T ss_pred hhheEEeCCC
Confidence 9999999753
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=5.1e-42 Score=256.93 Aligned_cols=163 Identities=26% Similarity=0.512 Sum_probs=151.3
Q ss_pred CChHHHHHHHHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHH
Q psy5457 1 MNPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLL 80 (167)
Q Consensus 1 f~v~~A~~~l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~ 80 (167)
||+++|+++|++|++||+++|+++.+.++ +++.+.++.|++.+++|+|++||||+++++|++|++.++..+++|+.++
T Consensus 45 ~dv~~A~~~l~~~l~wR~~~~~i~~~~~~--~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~ 122 (262)
T 1r5l_A 45 FDLDLAWRLLKNYYKWRAECPEISADLHP--RSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLI 122 (262)
T ss_dssp TCHHHHHHHHHHHHHHHHHCHHHHSCCCG--GGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhChHhhhcCCh--HHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHH
Confidence 79999999999999999999988776654 3467788999888899999999999999999999999999999999999
Q ss_pred HHHHHhhccCcceecEEEEEecCCCcc----ccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHHH
Q psy5457 81 LMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKT 156 (167)
Q Consensus 81 ~~e~~~~~~~~~~~g~v~I~D~~g~~~----~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~ 156 (167)
++|.++.+++++++|+++|+|++|+|+ +++++.+|.+++++|++||+|++++||||+|++|+.+|+++||||+++|
T Consensus 123 ~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t 202 (262)
T 1r5l_A 123 TSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI 202 (262)
T ss_dssp HHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHH
T ss_pred HHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHH
Confidence 999999887778899999999999994 3578999999999999999999999999999999999999999999999
Q ss_pred hcceeEeec
Q psy5457 157 RDKVGAVLT 165 (167)
Q Consensus 157 ~~ki~~~~~ 165 (167)
++||+++++
T Consensus 203 ~~Ki~~~~~ 211 (262)
T 1r5l_A 203 KERIHMHGN 211 (262)
T ss_dssp HTTEEECCS
T ss_pred HhheEEeCC
Confidence 999999975
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=6.8e-38 Score=238.47 Aligned_cols=162 Identities=23% Similarity=0.298 Sum_probs=140.0
Q ss_pred CChHHHHHHHHHHHHHHhhC--CCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCC----CCHHHH
Q psy5457 1 MNPETSVDLLENYIHFRKTH--PEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL----FSLEAI 74 (167)
Q Consensus 1 f~v~~A~~~l~~~~~~R~~~--~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~----~~~~~~ 74 (167)
||+++|+++|+++++||+++ ++++.+.++.+ .+.++..+..+++|+|++||||+++++|++|+++ .+.+++
T Consensus 64 fdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~ 140 (296)
T 1aua_A 64 FDVQLAKEMFENCEKWRKDYGTDTILQDFHYDE---KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERM 140 (296)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTT---HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCcchhhhccccCc---HHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHH
Confidence 79999999999999999998 67776655433 2445566666678999999999999999998764 589999
Q ss_pred HHHHHHHHHHHhhc--------cCcceecEEEEEecCCCcc-ccC--HHHHHHHHHHhhhcccceeeeEEEEeCchHHHH
Q psy5457 75 FKSLLLLMDSLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYPARFKAIHFINEPVQVDV 143 (167)
Q Consensus 75 ~~~~~~~~e~~~~~--------~~~~~~g~v~I~D~~g~~~-~~~--~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~ 143 (167)
+++.++.+|.+++. .+.+++|+++|+|++|+++ +++ ++.+|.++.++|++||+|++++||||+|++|++
T Consensus 141 ~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~ 220 (296)
T 1aua_A 141 LKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFST 220 (296)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHH
Confidence 99999999987653 2345889999999999994 444 678999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHhcceeEeec
Q psy5457 144 LLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 144 ~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
+|+++||||+++|++||+|+++
T Consensus 221 ~~~iikpfl~~~t~~KI~~~~~ 242 (296)
T 1aua_A 221 AFRLFKPFLDPVTVSKIFILGS 242 (296)
T ss_dssp HHHHHGGGSCHHHHTTEEECCS
T ss_pred HHHHHHhhcCHhhcceEEEeCc
Confidence 9999999999999999999975
No 4
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=8.2e-36 Score=235.64 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=136.2
Q ss_pred CChHHHHHHHHHHHHHHhhCC--CccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCC----CCCHHHH
Q psy5457 1 MNPETSVDLLENYIHFRKTHP--EIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSH----LFSLEAI 74 (167)
Q Consensus 1 f~v~~A~~~l~~~~~~R~~~~--~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~----~~~~~~~ 74 (167)
||+++|+++|+++++||++++ +++. ...++.+++.+. ..++|+|++||||+++++|++|++ ..+.+++
T Consensus 47 fdv~~A~~~l~~~l~wR~~~~~~~i~~--~~~~~~~~~~~~----~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~ 120 (403)
T 1olm_A 47 FDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEVIQQYLS----GGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDL 120 (403)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTGGGGGG--SCCCHHHHHHCC----BEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcccc--cCCHHHHHHhCC----ceeeccCCCcCEEEEEecCCCChHHhhccCCHHHH
Confidence 799999999999999999984 5554 222333444433 335799999999999999999987 5799999
Q ss_pred HHHHHHHHHHHhhccCc-------ceecEEEEEecCCCcc-cc---CHHHHHHHHHHhhhcccceeeeEEEEeCchHHHH
Q psy5457 75 FKSLLLLMDSLLVDTKI-------QYSGFVFLLDWNQTSI-YA---SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDV 143 (167)
Q Consensus 75 ~~~~~~~~e~~~~~~~~-------~~~g~v~I~D~~g~~~-~~---~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~ 143 (167)
+|+.++++|.++++... +++|+++|+|++|+++ ++ .++.+|.+++++|++||+|++++||||+|++|++
T Consensus 121 ~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~ 200 (403)
T 1olm_A 121 LRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPV 200 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHH
Confidence 99999999999876533 4799999999999994 44 4577899999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHhcceeEeec
Q psy5457 144 LLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 144 ~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
+|+++||||+++|++||+|+++
T Consensus 201 i~~~ikpfl~~~t~~KI~~~~~ 222 (403)
T 1olm_A 201 AYNLIKPFLSEDTRKKIMVLGA 222 (403)
T ss_dssp HHHHHGGGSCHHHHHTEEECCT
T ss_pred HHHHHHhhcCHhhhceEEEECh
Confidence 9999999999999999999964
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=2.1e-36 Score=232.25 Aligned_cols=165 Identities=18% Similarity=0.262 Sum_probs=136.3
Q ss_pred CChHHHHHHHHHHHHHHhhCC--CccCCCCCCCH---HHHHHHhhcCCccCCCCCCCCCEEEEEecCCcCCCC----CCH
Q psy5457 1 MNPETSVDLLENYIHFRKTHP--EIFGQLSLKDP---YVQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHL----FSL 71 (167)
Q Consensus 1 f~v~~A~~~l~~~~~~R~~~~--~~~~~~~~~~~---~~~~~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~----~~~ 71 (167)
||+++|+++|+++++||++++ +++.+.++..+ .....+.+.+..+++|+|++||||+++++|++|+++ .+.
T Consensus 73 fdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~ 152 (320)
T 3q8g_A 73 FDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTE 152 (320)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCH
Confidence 899999999999999999987 55543322210 012344555566788999999999999999999875 488
Q ss_pred HHHHHHHHHHHHHHhhc--------cCcceecEEEEEecCCCcc-ccC--HHHHHHHHHHhhhcccceeeeEEEEeCchH
Q psy5457 72 EAIFKSLLLLMDSLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYPARFKAIHFINEPVQ 140 (167)
Q Consensus 72 ~~~~~~~~~~~e~~~~~--------~~~~~~g~v~I~D~~g~~~-~~~--~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~ 140 (167)
++++++.++.+|.+++. .+..++++++|+|++|+++ ++. ++.+|.++.++|++||+|++++||||+|++
T Consensus 153 ~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~ 232 (320)
T 3q8g_A 153 KQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFG 232 (320)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHH
Confidence 99999999999987642 1123577899999999994 443 578999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHhcceeEeec
Q psy5457 141 VDVLLALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 141 ~~~~~~~~k~fl~~k~~~ki~~~~~ 165 (167)
|+.+|+++||||+++|++||+|+++
T Consensus 233 f~~~~~~ikpfl~~~t~~KI~~~~~ 257 (320)
T 3q8g_A 233 FSTMFKMVKPFLDPVTVSKIFILGS 257 (320)
T ss_dssp HHHHHTTTGGGSCHHHHHTEEECCT
T ss_pred HHHHHHHHHHhCCHHHhhhEEEeCC
Confidence 9999999999999999999999975
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.37 E-value=8.7e-13 Score=97.92 Aligned_cols=123 Identities=9% Similarity=0.058 Sum_probs=99.3
Q ss_pred HHhhcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc--ccCHHHH
Q psy5457 37 CLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI--YASPTLL 114 (167)
Q Consensus 37 ~l~~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~--~~~~~~~ 114 (167)
+-+.+++ +-.|.|++||||+++..+++++...+.+.++.+.+..++.... ....+|+|++|++. ..+.+.+
T Consensus 7 i~~~~if-y~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~~------~~y~lV~d~T~~~~~n~p~~~wl 79 (256)
T 3pg7_A 7 LKTLSIF-YQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYA------KPYEIVVDLTHTGPSNRFKTDFL 79 (256)
T ss_dssp HHHHTSE-EEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTT------SCEEEEEECTTCCGGGCCCHHHH
T ss_pred HHHcCCE-EEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEECCCCCcccCCcHHHH
Confidence 3344553 3448999999999999999998888877777777766664332 45899999999984 4566889
Q ss_pred HHHHHHhhhcccceeeeEEEEeCchHHHHHHHH-HHhhhhHHHhcceeEeecC
Q psy5457 115 RTMISGLQDCYPARFKAIHFINEPVQVDVLLAL-VKPFLKEKTRDKVGAVLTM 166 (167)
Q Consensus 115 k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~-~k~fl~~k~~~ki~~~~~~ 166 (167)
+.+.+++...|...++++|++|+++++...+.. .++|.+.+..+|+++++++
T Consensus 80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl 132 (256)
T 3pg7_A 80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP 132 (256)
T ss_dssp HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST
T ss_pred HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH
Confidence 999999999999999999999999999976665 5677777888999999874
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.27 E-value=7.1e-12 Score=94.40 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=98.2
Q ss_pred hcCCccCCCCCCCCCEEEEEecCCcCCCCCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCcc--ccCHHHHHHH
Q psy5457 40 NRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI--YASPTLLRTM 117 (167)
Q Consensus 40 ~~~~~~l~g~d~~Gr~V~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~--~~~~~~~k~~ 117 (167)
.+.+++-.|.|++||||+++..++++....+.+.++-+++..++.... ....+|+|++|++. ..+.+.++.+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~~------~~y~lV~D~T~~~~~n~p~~~~l~~~ 101 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYA------KPYEIVVDLTHTGPSNRFKTDFLSKW 101 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTTT------SCEEEEEECTTCCGGGCCCHHHHGGG
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhcC------CCeEEEEEcCCCCccCCChHHHHHHH
Confidence 444444458899999999999999998888887777777666654332 45999999999984 4666889999
Q ss_pred HHHhhhcccceeeeEEEEeCchHHHHHH-HHHHhhhhHHHhcceeEeec
Q psy5457 118 ISGLQDCYPARFKAIHFINEPVQVDVLL-ALVKPFLKEKTRDKVGAVLT 165 (167)
Q Consensus 118 ~~~~~~~yP~rl~~i~ivn~p~~~~~~~-~~~k~fl~~k~~~ki~~~~~ 165 (167)
.+++...|+..++++|++|+|++|...+ ...+++.+.+..+|+.++++
T Consensus 102 ~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~ 150 (290)
T 3peg_A 102 FVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC 150 (290)
T ss_dssp GTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS
T ss_pred HHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC
Confidence 9999999999999999999998888754 57788999999999988753
No 8
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=85.92 E-value=4.6 Score=25.88 Aligned_cols=84 Identities=15% Similarity=0.062 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCcceecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHH
Q psy5457 68 LFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLAL 147 (167)
Q Consensus 68 ~~~~~~~~~~~~~~~e~~~~~~~~~~~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ 147 (167)
+.+.+|+-. ..-.+|..+.+.+ ...+.+++|++++. -+++..+..=++.-..+ -..+.++-||-.+.+...+-++
T Consensus 29 ~lt~~d~~~-l~~~l~~~l~~~~--~~~i~ll~~~~~f~-G~~~~a~~~d~k~~~~h-~~~~~RiAvV~d~~W~~~~~~~ 103 (126)
T 2q3l_A 29 KLTHEDYEQ-MTPLLESALAGIK--TPEIVALIDITELD-GLSLHAAWDDLKLGLKH-GKEFKRVAIIGQGELQEWATRV 103 (126)
T ss_dssp EECHHHHHH-HHHHHHHHTTTCC--SSCEEEEEEEEEEE-EECHHHHHHHHHHHHHH-GGGEEEEEEECCSHHHHHHHHH
T ss_pred eECHHHHHH-HHHHHHHHHHhCC--CceEEEEEEecCCC-CCCHHHHHHHHHhhhhH-HhcCCEEEEEcChHHHHHHHHH
Confidence 346677776 6677777666432 11255666655443 13343333223322233 3679999999999999999999
Q ss_pred HHhhhhHHH
Q psy5457 148 VKPFLKEKT 156 (167)
Q Consensus 148 ~k~fl~~k~ 156 (167)
+++|++.++
T Consensus 104 ~~~~~~~ev 112 (126)
T 2q3l_A 104 ANWFTPGEF 112 (126)
T ss_dssp HHHHCSSEE
T ss_pred HhhccCCce
Confidence 999987653
No 9
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=79.52 E-value=2.6 Score=29.40 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEEE
Q psy5457 11 ENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFL 59 (167)
Q Consensus 11 ~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~~ 59 (167)
++.++++.-...+-.+..++.++...+++.-.-+..|..+++|||+++.
T Consensus 135 ~~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~ 183 (197)
T 3kdg_A 135 EEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIH 183 (197)
T ss_dssp HHHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEE
T ss_pred HHHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEE
Confidence 3445555555544444456777888888765556678889999998763
No 10
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=76.80 E-value=2.5 Score=30.17 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCccCCCCCCCHHHHHHHhhcCCccCCCCCCCCCEEEE
Q psy5457 10 LENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLF 58 (167)
Q Consensus 10 l~~~~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~g~d~~Gr~V~~ 58 (167)
+++.++++.....+-.+..++.++...+++.-.-+..|..+++|||+++
T Consensus 157 ~~~~~as~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i 205 (220)
T 3ncv_A 157 ENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWV 205 (220)
T ss_dssp HHHHHHHHTTCSSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEE
T ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEE
Confidence 4455566654444444445677788888876666677889999999876
No 11
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=52.07 E-value=27 Score=23.14 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHhhhccc
Q psy5457 110 SPTLLRTMISGLQDCYP 126 (167)
Q Consensus 110 ~~~~~k~~~~~~~~~yP 126 (167)
+|.-++..++.+++.||
T Consensus 46 nP~si~a~l~al~~~~~ 62 (163)
T 3mvn_A 46 HPTAITATIDALRAKVG 62 (163)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 44444444444444444
No 12
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=46.32 E-value=14 Score=27.36 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=28.1
Q ss_pred ccceeeeEEEEeCchHHHHHHHHHHhhhhHHHh
Q psy5457 125 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTR 157 (167)
Q Consensus 125 yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k~~ 157 (167)
....=.+++|||+||-+.-..+-+-|+|.+.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 566677899999999999999999998888654
No 13
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=44.68 E-value=60 Score=20.81 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=24.1
Q ss_pred ecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHH
Q psy5457 94 SGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLA 146 (167)
Q Consensus 94 ~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~ 146 (167)
+|++++.|+ |-+. ++... .+. +.+ | ++.++|.|-+...+-.
T Consensus 59 dgVlvltDL-Ggsp-~N~~~---al~-~~~--~----~v~viNlPmvega~~a 99 (131)
T 3ct6_A 59 DNLLTFFDL-GSAR-MNLDL---VSE-MTD--K----ELTIFNVPLIEGAYTA 99 (131)
T ss_dssp SEEEEEESS-GGGH-HHHHH---HHH-TCS--S----EEEECCSCHHHHHHHH
T ss_pred CCEEEEEeC-CCCh-HHHHH---HHH-hcC--C----CEEEEEhhHHHHHHHH
Confidence 789999999 4331 22111 111 111 2 7788899999665553
No 14
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=39.07 E-value=68 Score=19.87 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=34.2
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+++|+++++. +|.+.+..+..+.+. .-.+=..+.++|++.-..-++.+.
T Consensus 53 ~~vvlDls~V~~-iDSsGl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 53 NKIFLVLSDVES-IDSFSLGVIVNILKS-ISSSGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp CEEEEECTTCSC-CCHHHHHHHHHHHHH-HHHHTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCE-EcHHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHc
Confidence 468999999873 455555544444433 334457789999998877777654
No 15
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=37.37 E-value=64 Score=19.02 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=33.2
Q ss_pred EEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 97 VFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 97 v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
.+++|+++++. +|.+.+..+..+.+. ...+=..+.+.|++.-+.-++...
T Consensus 46 ~vvlDls~v~~-iDssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSY-MDSAGLGTLVVILKD-AKINGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCC-BCHHHHHHHHHHHHH-HHHTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcE-EccHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHh
Confidence 57999999873 465555555544433 333456789999998777666654
No 16
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=34.46 E-value=66 Score=19.21 Aligned_cols=52 Identities=10% Similarity=0.058 Sum_probs=33.8
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVK 149 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k 149 (167)
-.+++|+++++. +|.+.+..+..+.+. .-.+=..+.++|++.-..-++....
T Consensus 44 ~~vvlDls~v~~-iDssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~g 95 (116)
T 1th8_B 44 RHIVLNLGQLTF-MDSSGLGVILGRYKQ-IKNVGGQMVVCAVSPAVKRLFDMSG 95 (116)
T ss_dssp CEEEEEEEEEEE-ECHHHHHHHHHHHHH-HHHTTCCEEEESCCHHHHHHHHHHT
T ss_pred cEEEEECCCCcE-EccHHHHHHHHHHHH-HHHhCCeEEEEeCCHHHHHHHHHhC
Confidence 357999999873 465555545444433 3334567899999987777776643
No 17
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=34.09 E-value=74 Score=19.18 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=35.0
Q ss_pred EEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHH
Q psy5457 97 VFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVK 149 (167)
Q Consensus 97 v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k 149 (167)
.+++|+++++. +|..-+..++.+.+. .-.+=..+.++|++.-..-++.+..
T Consensus 44 ~vvlDls~v~~-iDssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~g 94 (117)
T 4hyl_A 44 KMILDLREVSY-MSSAGLRVLLSLYRH-TSNQQGALVLVGVSEEIRDTMEITG 94 (117)
T ss_dssp EEEEEEEEEEE-ECHHHHHHHHHHHHH-HHHTTCEEEEECCCHHHHHHHHHHT
T ss_pred eEEEECCCCcE-EcHHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 89999999873 465555555544433 3345567899999988877776654
No 18
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=32.94 E-value=93 Score=19.60 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=35.1
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|+++++. +|.+-+..+..+.+ .+-.+=..+++.|.+.-..-++...
T Consensus 65 ~~vvlDls~v~~-iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~ 115 (143)
T 3llo_A 65 HTVILDFTQVNF-MDSVGVKTLAGIVK-EYGDVGIYVYLAGCSAQVVNDLTSN 115 (143)
T ss_dssp SEEEEECTTCCC-CCHHHHHHHHHHHH-HHHTTTCEEEEESCCHHHHHHHHHT
T ss_pred eEEEEECCCCcc-ccHHHHHHHHHHHH-HHHHCCCEEEEEeCCHHHHHHHHhC
Confidence 479999999873 46655665554443 3455677899999987776666543
No 19
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=31.91 E-value=93 Score=19.28 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=35.2
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|+++++. +|.+-+..+.++.+ .+-.+=.++++.|.+.-..-++...
T Consensus 50 ~~vvlDls~v~~-iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 50 QILILRLKWVPF-MDITGIQTLEEMIQ-SFHKRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp SEEEEECTTCCC-CCHHHHHHHHHHHH-HHHTTTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCc-ccHHHHHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 569999999873 46655555554443 3445667899999988777666553
No 20
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=28.81 E-value=83 Score=18.88 Aligned_cols=50 Identities=6% Similarity=0.167 Sum_probs=33.0
Q ss_pred EEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 97 VFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 97 v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
.+++|+++++. +|.+.+..+..+.+. .-.+=..+.+.|++.-..-++...
T Consensus 44 ~vvlDls~v~~-iDssgl~~L~~~~~~-~~~~g~~l~l~~~~~~v~~~l~~~ 93 (117)
T 1h4x_A 44 TIIWNFERLSF-MDSSGVGLVLGRMRE-LEAVAGRTILLNPSPTMRKVFQFS 93 (117)
T ss_dssp EEEEEEEEEEE-ECTHHHHHHHHHHHH-HHTTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcE-echHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHHHHh
Confidence 57999999873 455555544444433 334456789999988777777654
No 21
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=28.40 E-value=1.1e+02 Score=19.10 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=34.7
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|+++++. +|.+-+..+..+.+ .+-.+=.+++++|.+.-..-++...
T Consensus 53 ~~vvlDls~v~~-iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~ 103 (135)
T 4dgf_A 53 KVFILRMRRVPV-IDATGMHALWEFQE-SCEKRGTILLLSGVSDRLYGALNRF 103 (135)
T ss_dssp SEEEEECTTCSC-BCHHHHHHHHHHHH-HHHHHTCEEEEESCCHHHHHHHHHH
T ss_pred cEEEEEcCCCCc-cCHHHHHHHHHHHH-HHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 579999999873 46555555554443 3445667899999987776666543
No 22
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=28.14 E-value=1.1e+02 Score=18.76 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=36.4
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|+++++ .+|.+-+..+.++.+. +-. =.++++.|.+.-..-++...
T Consensus 47 ~~vilDl~~v~-~iDssgl~~L~~~~~~-~~~-g~~l~l~~~~~~v~~~l~~~ 96 (118)
T 3ny7_A 47 RIVILKWDAVP-VLDAGGLDAFQRFVKR-LPE-GCELRVCNVEFQPLRTMARA 96 (118)
T ss_dssp SEEEEEEEECC-CBCHHHHHHHHHHHHH-CCT-TCEEEEECCCHHHHHHHHHT
T ss_pred cEEEEEcCCCC-eecHHHHHHHHHHHHH-HHC-CCEEEEecCCHHHHHHHHHc
Confidence 46999999987 3577777766666654 455 67899999988776666543
No 23
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.59 E-value=41 Score=15.03 Aligned_cols=15 Identities=0% Similarity=0.282 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhcccc
Q psy5457 113 LLRTMISGLQDCYPA 127 (167)
Q Consensus 113 ~~k~~~~~~~~~yP~ 127 (167)
+||..++++|.++-.
T Consensus 3 fMkDvlql~qQy~qs 17 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888888877643
No 24
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=23.45 E-value=1.3e+02 Score=18.24 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=35.1
Q ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhcccc-eeeeEEEEeCchHHHHHHHHH
Q psy5457 96 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPA-RFKAIHFINEPVQVDVLLALV 148 (167)
Q Consensus 96 ~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~-rl~~i~ivn~p~~~~~~~~~~ 148 (167)
-.+|+|+++++. +|.+-+..++.+.+. .-. +=+.+.++|++.-..-++.+.
T Consensus 49 ~~vvlDls~v~~-iDSsGl~~L~~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~ 100 (121)
T 3t6o_A 49 RKVLIDLEGVEF-FGSSFIELLVRGWKR-IKEDQQGVFALCSVSPYCVEVLQVT 100 (121)
T ss_dssp CEEEEECTTCCE-ECHHHHHHHHHHHHH-HTTSTTCEEEEESCCHHHHHHHTTC
T ss_pred CeEEEECCCCCE-EcHHHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHHHHh
Confidence 469999999873 466556655555543 334 567889999998777666543
No 25
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=22.48 E-value=33 Score=19.06 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCCccCCCCCCCCCEE
Q psy5457 32 PYVQICLRNRFPGVLPDRDRNGRCV 56 (167)
Q Consensus 32 ~~~~~~l~~~~~~~l~g~d~~Gr~V 56 (167)
+.+.....+|+...+.|++++-+|.
T Consensus 7 D~leRA~~rGYqAGl~GrSke~CPy 31 (61)
T 3v22_V 7 DRLERAHQRGYQAGIAGRSKEMCPY 31 (61)
T ss_dssp HHHHHHHHHHHHHHSSSSCCSSCCC
T ss_pred hHHHHHHHHHHHhhccCCChhhCCC
Confidence 3467788899988888999887774
No 26
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.38 E-value=46 Score=24.85 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=18.8
Q ss_pred EEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHH
Q psy5457 97 VFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVD 142 (167)
Q Consensus 97 v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~ 142 (167)
+.|+|++. +...++...+++.. . +.-+.|.+|..-....
T Consensus 50 IhIIdL~k-----T~e~L~~Aa~~I~~-i-~~~~~ILfVgTk~~aq 88 (305)
T 3iz6_A 50 IYIINLGK-----TWEKLQLAARVIVA-I-ENPQDIIVQSARPYGQ 88 (305)
T ss_dssp EEECCHHH-----HHHHHHHHHHHHHH-T-TSSCCEEEECCSHHHH
T ss_pred ceEECHHH-----HHHHHHHHHHHHHH-H-hCCCeEEEEeCcHHHH
Confidence 44556554 22233333344433 2 3445677777665543
No 27
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=21.46 E-value=62 Score=19.45 Aligned_cols=20 Identities=5% Similarity=0.028 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhHHHhccee
Q psy5457 142 DVLLALVKPFLKEKTRDKVG 161 (167)
Q Consensus 142 ~~~~~~~k~fl~~k~~~ki~ 161 (167)
.++|++++-.++++..++|.
T Consensus 35 ~y~w~~L~~~l~e~~~~~v~ 54 (92)
T 2e29_A 35 SCAWKELNRKLSSNAVSQIT 54 (92)
T ss_dssp HHHHHHHHHHSCHHHHTTCE
T ss_pred HHHHHHHHHhcCHHHHhhhC
Confidence 45789999999999887765
No 28
>3b48_A Uncharacterized protein; enterococcus faecalis V583, structural genomics, PSI-2, PROT structure initiative; 2.21A {Enterococcus faecalis} SCOP: c.54.1.2
Probab=21.25 E-value=86 Score=20.02 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=24.3
Q ss_pred eecEEEEEecCCCccccCHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHH
Q psy5457 93 YSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLL 145 (167)
Q Consensus 93 ~~g~v~I~D~~g~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~ 145 (167)
-+|++++.|+ |-+- ++.. ..+..+.+. .-.+++++|.|-+...+-
T Consensus 64 ~dgVlvltDL-Ggsp-~N~~---~~~~~~~~~---~~~~v~vvNlPmv~~~l~ 108 (135)
T 3b48_A 64 DREFLIFADL-GSAV-LSSE---LAFDMLEED---QQKHYHLVDAPLVEGAFA 108 (135)
T ss_dssp SCEEEEEECS-HHHH-HHHH---HHHHHSCHH---HHTTEEECCSCHHHHHHH
T ss_pred CCCEEEEEeC-CCCh-hHHH---HHHHHhccc---ccCCEEEEEHHHHHHHHH
Confidence 3789999999 5331 2211 122233221 122567789997744433
No 29
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=20.04 E-value=70 Score=19.93 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhhhcccceeeeEEEEeCchHHHHHHHHHHhhhhHH
Q psy5457 110 SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEK 155 (167)
Q Consensus 110 ~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~~k~fl~~k 155 (167)
.+.++..++..+...||+-+ ++.=+-.+..+++.=|++.
T Consensus 9 ~p~~l~siv~WLRaGYPeGV-------P~~Dy~PLlALL~R~Ltdd 47 (107)
T 3ol3_A 9 TTTFMDNVLGWLHKGYPEGV-------PPKDYFALLALLKRSLTED 47 (107)
T ss_dssp CHHHHHHHHHHHHHHCTTCB-------CGGGHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHccCCCCC-------CCCccHHHHHHhcccCCHH
Confidence 46789999999999999976 3444455666666656554
Done!