RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5457
         (167 letters)



>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
           secretory proteins, such as S. cerevisiae
           phosphatidylinositol transfer protein (Sec14p), and in
           lipid regulated proteins such as RhoGAPs, RhoGEFs and
           neurofibromin (NF1). SEC14 domain of Dbl is known to
           associate with G protein beta/gamma subunits.
          Length = 157

 Score = 87.4 bits (217), Expect = 2e-22
 Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 44  GVLPDRDRNGRCVLFLSLRN-WSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDW 102
           G L  RD+ GR VL +   N   S     E + + L+  ++ LL +   Q  GFV ++D 
Sbjct: 11  GYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDL 70

Query: 103 NQTS---IYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDK 159
              S   +   P+LL+ ++  LQD YP R KA++ IN P    VL  +VKPFL EKTR K
Sbjct: 71  KGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKK 130

Query: 160 V 160
           +
Sbjct: 131 I 131


>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain. 
          Length = 152

 Score = 82.7 bits (205), Expect = 9e-21
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 43  PGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKI-QYSGFVFLLD 101
            G L  RD+ GR VL+L          SLE + + L+L+++  L+     Q  G   ++D
Sbjct: 3   KGYLHGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIID 62

Query: 102 WNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTR 157
               S+        + L+ ++  LQD YP R   I  +N P   +V+  L+KPFL  KTR
Sbjct: 63  MKGLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTR 122

Query: 158 DKV 160
           +K+
Sbjct: 123 EKI 125


>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
           phosphatidylinositol transfer protein (Sec14p).  Domain
           in homologues of a S. cerevisiae phosphatidylinositol
           transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
           the RasGAP, neurofibromin (NF1). Lipid-binding domain.
           The SEC14 domain of Dbl is known to associate with G
           protein beta/gamma subunits.
          Length = 158

 Score = 75.4 bits (186), Expect = 8e-18
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 50  DRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQY--SGFVFLLDWNQTSI 107
           D++GR VL      +     +LE + + L+ +++ +L + K      GF  + D    S+
Sbjct: 16  DKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSM 75

Query: 108 YASPT-LLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
                 +LR ++  LQD YP R   ++ IN P    VL  ++KPFL EKTR+K+
Sbjct: 76  SNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKI 129


>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain.  This family
           includes divergent members of the CRAL-TRIO domain
           family. This family includes ECM25 that contains a
           divergent CRAL-TRIO domain identified by Gallego and
           colleagues.
          Length = 149

 Score = 32.3 bits (74), Expect = 0.053
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 14/117 (11%)

Query: 49  RDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLD-----WN 103
           RD+ GR VL       +  L + +      LL     ++  +++  GFV ++D      N
Sbjct: 8   RDKEGRPVLVFD----AKRLPASDLDDLDRLLFYLLSILSEELKPKGFVVVIDHTGVTRN 63

Query: 104 QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLA-LVKPFLKEKTRDK 159
           + S     + L+ +   L   +P   KA++ ++    +   L  L + F  +K   K
Sbjct: 64  KPSW----SWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTLGRLFSSKKLFKK 116


>gnl|CDD|180667 PRK06718, PRK06718, precorrin-2 dehydrogenase; Reviewed.
          Length = 202

 Score = 26.5 bits (59), Expect = 6.0
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 109 ASPTLLRTMISGLQDCYPARFKA-IHFINE 137
           ASP L + +   L+  Y   +++ I F+ E
Sbjct: 128 ASPKLAKKIRDELEALYDESYESYIDFLYE 157


>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
          Length = 292

 Score = 26.5 bits (59), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 126 PARFKAIHFINEPVQVDVLLALVK 149
           P RF  IHF+N PV V  L+ L++
Sbjct: 134 PERFIGIHFMN-PVPVMKLVELIR 156


>gnl|CDD|226838 COG4405, COG4405, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 140

 Score = 25.8 bits (57), Expect = 7.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 116 TMISGLQDCYPARFKAIHFINEPVQVDVLLALV 148
           TM    ++ YP+ F A  F + P   D L  LV
Sbjct: 2   TMWDKYKEKYPSTFGAWAFGDSPGLADELADLV 34


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,651,010
Number of extensions: 794365
Number of successful extensions: 867
Number of sequences better than 10.0: 1
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 17
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)