RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5457
(167 letters)
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 144 bits (365), Expect = 3e-43
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 2 NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
N + +LL Y++FR +PE+F L V+ + +PGVL RD+ GR V+ ++
Sbjct: 105 NVGRAYELLRGYVNFRLQYPELFDSL--SPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNI 162
Query: 62 RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTM 117
NW S + + I ++ +++ LL + + Q +GF + ++ ++ + LR M
Sbjct: 163 ENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKM 222
Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+ LQD +PA FKAIHFI++P +VKPFLK K ++V
Sbjct: 223 VDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV 265
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 142 bits (361), Expect = 4e-43
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 2 NPETSVDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFLSL 61
+ + + LL+NY +R PEI L + L+ + GVL RD G VL +
Sbjct: 46 DLDLAWRLLKNYYKWRAECPEISADL--HPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRI 103
Query: 62 RNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTM 117
+W +F+ +F+ L+ + ++ + + Q +G + D +P++ + +
Sbjct: 104 AHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKI 163
Query: 118 ISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+ L D +P + + IH INEPV + +++KPFL EK ++++
Sbjct: 164 AAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 206
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 85.4 bits (211), Expect = 3e-20
Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 23/176 (13%)
Query: 2 NPETSVDLLENYIHFRKTH--PEIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFL 59
+ + S +L ++ FRK I + ++ G + D +G V +
Sbjct: 48 DLQKSEAMLRKHVEFRKQKDIDNIISWQPPEV------IQQYLSGGMCGYDLDGCPVWYD 101
Query: 60 SLRNWSS----HLFSLEAIFKSLLLLMDSLL-------VDTKIQYSGFVFLLDWNQTSI- 107
+ + S + + ++ + + LL + + D +
Sbjct: 102 IIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLK 161
Query: 108 ---YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+ + ++ YP K + + P V L+KPFL E TR K+
Sbjct: 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI 217
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 69.1 bits (169), Expect = 1e-14
Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 20/180 (11%)
Query: 1 MNPETSVDLLENYIHFRKTHP-----EIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRC 55
+ SV++ +R+ + E + + +I L +P D++GR
Sbjct: 73 FDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRP 132
Query: 56 VLFLSLRNW----SSHLFSLEAIFKSLLLLMDSLLV--------DTKIQYSGFVFLLD-- 101
+ F L + + + + ++L+ + +LD
Sbjct: 133 LYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLK 192
Query: 102 -WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+ ++ Y + ++ + Q+ YP R + I+ P + +VKPFL T K+
Sbjct: 193 GISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI 252
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 64.0 bits (156), Expect = 7e-13
Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 20/176 (11%)
Query: 2 NPETSVDLLENYIHFRKTHP--EIFGQLSLKDPYVQICLRNRFPGVLPDRDRNGRCVLFL 59
+ + + ++ EN +RK + I + + + +P D++GR V F
Sbjct: 65 DVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPL---IAKFYPQYYHKTDKDGRPVYFE 121
Query: 60 SLRNWSSH----LFSLEAIFKSLLLLMDSLL--------VDTKIQYSGFVFLLD---WNQ 104
L + H + S E + K+L+ +S++ ++D +
Sbjct: 122 ELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISI 181
Query: 105 TSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKV 160
+S Y+ + +R Q+ YP R + IN P L KPFL T K+
Sbjct: 182 SSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKI 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.13
Identities = 21/162 (12%), Positives = 49/162 (30%), Gaps = 42/162 (25%)
Query: 13 YIHFRKTH-PEIFGQLSLKDPYVQICLRNRFPGV-LPDRDRNGRCVLFLSLRNWSSHLFS 70
+++ + + PE ++ + ++ + D N + + S++ L
Sbjct: 186 WLNLKNCNSPE-----TVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLK 239
Query: 71 LEAIFKSLLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYA----SPTLLRTMISGLQDCYP 126
+ LL+L++ V N + A LL T
Sbjct: 240 SKPYENCLLVLLN---V--------------QNAKAWNAFNLSCKILLTT---------- 272
Query: 127 ARFKAI-HFINEPVQVDVLLA-LVKPFLKEKTRDKVGAVLTM 166
RFK + F++ + L ++ + + L
Sbjct: 273 -RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.37
Identities = 32/195 (16%), Positives = 52/195 (26%), Gaps = 66/195 (33%)
Query: 3 PETSVDLLENYIHF--RKTHPEIFGQ------LSLKDPYVQICLRNR----FPGVLPDRD 50
P T +L+ ++ + P GQ L L + + L L +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQEN 112
Query: 51 RNGRCVLFLSLRNW---------------SSHLF--------SLEAIF----------KS 77
++N+ +S LF L AIF +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 78 LLLLMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDC---YPARFKAIHF 134
L L + Y V L I S L +I D + + +
Sbjct: 173 LRDLYQT--------YHVLVGDL------IKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 135 INEPVQ---VDVLLA 146
+ P D LL+
Sbjct: 219 LENPSNTPDKDYLLS 233
Score = 27.7 bits (61), Expect = 2.6
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 37/143 (25%)
Query: 19 THPEIFGQLSLKDP------YVQICLRNRFPGVLPDRDRN--------------GRCVLF 58
+H + + L P Q L+ +F +LP+ G+ + +
Sbjct: 12 SHGSL--EHVLLVPTASFFIASQ--LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 59 LSLRNWSSHLFSLEAIFKSLLL-LMDSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTM 117
+S S + + + L + L I ++ LL N T++ + L++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIK-- 124
Query: 118 ISGLQDCYPARFKAIHFINEPVQ 140
Y A P
Sbjct: 125 ------NY---ITARIMAKRPFD 138
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 28.9 bits (65), Expect = 0.66
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 96 FVFLLDWNQT--SIYASPTLLRTMISGLQDCYPARFKAIHFINEP 138
LL NQT I LLR + L++ + ARFK + ++
Sbjct: 177 VCHLLFANQTEKDI-----LLRPELEELRNKHSARFKLWYTLDRA 216
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 25.4 bits (56), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 7/24 (29%)
Query: 31 DPYVQICLRNRFPGVLPDRDRNGR 54
DPYV++ L LPD+ R+GR
Sbjct: 45 DPYVRMYL-------LPDKRRSGR 61
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 111
Score = 24.8 bits (54), Expect = 8.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 3 PETSVDLLENYIHF--RKTHPEIFGQLSLKDPYVQICLRNR 41
PE +++ N I ++ PE F K P + +RN
Sbjct: 16 PEQEIEIDRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNY 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.431
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,511,728
Number of extensions: 135427
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 22
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.8 bits)