RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5457
(167 letters)
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 97.8 bits (243), Expect = 8e-27
Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 38 LRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLMDSLLVDTKIQYSGFV 97
L+ + GVL RD G VL + +W +F+ +F+ L+ + ++ + + Q +G
Sbjct: 6 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIK 65
Query: 98 FLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLK 153
+ D +P++ + + + L D +P + + IH INEPV + +++KPFL
Sbjct: 66 AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLT 125
Query: 154 EKTRDKV 160
EK ++++
Sbjct: 126 EKIKERI 132
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
middle domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 199
Score = 65.1 bits (158), Expect = 4e-14
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 38 LRNRFPGVLPDRDRNGRCVLFLSLRNWS----SHLFSLEAIFKSLLLLMDSLLVDTKIQY 93
++ G + D +G V + + S + + ++ + + LL + Q
Sbjct: 5 IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT 64
Query: 94 S-------GFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVD 142
+ + D + + + ++ YP K + + P
Sbjct: 65 TKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFP 124
Query: 143 VLLALVKPFLKEKTRDKV 160
V L+KPFL E TR K+
Sbjct: 125 VAYNLIKPFLSEDTRKKI 142
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
phosphatidylinositol transfer protein sec14p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 203
Score = 60.9 bits (147), Expect = 1e-12
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 42 FPGVLPDRDRNGRCVLFLSLRNW----SSHLFSLEAIFKSLLLLMDSLL--------VDT 89
+P D++GR V F L + + S E + K+L+ +S++
Sbjct: 11 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAA 70
Query: 90 KIQYSGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLA 146
++D + +S Y+ + +R Q+ YP R + IN P
Sbjct: 71 GHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFR 130
Query: 147 LVKPFLKEKTRDKV 160
L KPFL T K+
Sbjct: 131 LFKPFLDPVTVSKI 144
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 31.3 bits (71), Expect = 0.009
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 2 NPETSVDLLENYIHFRKTHPEIFGQL 27
+ + + LL+NY +R PEI L
Sbjct: 38 DLDLAWRLLKNYYKWRAECPEISADL 63
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga
maritima [TaxId: 2336]}
Length = 120
Score = 26.5 bits (58), Expect = 1.0
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 83 DSLLVDTKIQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPA-RFKAIHFINEPVQV 141
+++D + + + + + +L T++S + A ++ +P
Sbjct: 45 HVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNP 104
Query: 142 DVLLALVKPFLKEKTR 157
++LLA VK FL+ + +
Sbjct: 105 EILLARVKRFLEREKK 120
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 25.4 bits (55), Expect = 2.6
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 34 VQICLRNRFPGVLPDRDRNGRCVLFLSLRNWSSHLFSLEAIFKSLLLLM 82
Q+ V P NG L + +WS L S++++ S++ ++
Sbjct: 69 PQVMFTGENIPVHPHVYSNGHICLSILTEDWSPAL-SVQSVCLSIISML 116
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 267
Score = 25.1 bits (54), Expect = 5.3
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 7 VDLLENYIHFRKTHPEIFGQLSLKDPYVQICLRNRFPGVLPDRDRN 52
V+ L I KTH +I S++ + + L DR
Sbjct: 48 VEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRK 93
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 24.7 bits (53), Expect = 6.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 110 SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLK--EKTRDKVGAVLT 165
+ LL + + G D + VQ+ +L A+VK FLK +T++ V VL+
Sbjct: 459 ADELLESFLEGFHDE-----------STQVQLTLLTAIVKLFLKKPSETQELVQQVLS 505
>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Engineered (including hybrid species)}
Length = 106
Score = 23.5 bits (50), Expect = 9.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 100 LDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHF 134
L W Q +P LL S L+ P+RF
Sbjct: 32 LAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGS 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.431
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,136
Number of extensions: 26320
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 13
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.2 bits)