BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5460
(994 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 623 bits (1606), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/464 (66%), Positives = 373/464 (80%), Gaps = 8/464 (1%)
Query: 1 METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR +A
Sbjct: 314 LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSA 373
Query: 61 SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
S + +L QVINAA LAA+P+SK+AQENMD+FKE W+ QVRVLT+AVDDIT+IDDFLAV
Sbjct: 374 SQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAV 433
Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
SENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +EMDNYEPG+YTE+VLE
Sbjct: 434 SENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLE 493
Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRT 240
A K+L VMP F +VE AV+ALS+ P + +DENEFIDASRLVYDG+R+IR+AVLM RT
Sbjct: 494 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRT 553
Query: 241 XXXXXXXXXXXXXQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQ 300
S + +L I+G +AR M ++ +E K KIA+
Sbjct: 554 PEELDDSDFETEDFDVRSRTSVQTEDDQL-------IAG-QSARAIMAQLPQEQKAKIAE 605
Query: 301 QVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAA 360
QV F+ EK K D EV+KWDD+GNDIIVLAK MCMIMMEMTDFTRG+GPLK T DVI+AA
Sbjct: 606 QVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAA 665
Query: 361 KKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGE 420
KKI+EAG+ +DKL R IAD CP+S+ K+DLLAYLQRIALYCHQLNI SKVKA+VQN+ GE
Sbjct: 666 KKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGE 725
Query: 421 LIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVA 464
L+VSG+DSA SLIQAAKNLMNAVV TVK+SYVASTKY + +A
Sbjct: 726 LVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQKSQGMA 769
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/568 (46%), Positives = 341/568 (60%), Gaps = 116/568 (20%)
Query: 480 SFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRY 539
SF+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR
Sbjct: 312 SFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRM 371
Query: 540 AASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQ 599
+AS + +L QVINAA LAA+P QS++AQENMD+FKE W+ Q
Sbjct: 372 SASQLEALCPQVINAALALAAKP------------------QSKLAQENMDLFKEQWEKQ 413
Query: 600 VRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVAN 659
VRVLT+AVDDIT+IDDFLAVSENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +
Sbjct: 414 VRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIH 473
Query: 660 VVAAEMDNYEPGIYTERVLEAIKVLREQGM-------EAMRKMTEEDKQKIAQQVEFFRS 712
VV +EMDNYEPG+YTE+VLEA K+L M EA + D + + EF +
Sbjct: 474 VVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDA 533
Query: 713 EKLKFD--REVAK----------WDD-----------------TGNDIIVLAKHMCMIMM 743
+L +D R++ K DD T +D ++ + IM
Sbjct: 534 SRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDVRSRTSVQTEDDQLIAGQSARAIMA 593
Query: 744 EM------------TDFTRGRGPLKTTM--------DVINAAKKISEAGTNLDKLTRQIA 783
++ F + L + D+I AK++ + TR
Sbjct: 594 QLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTR--- 650
Query: 784 DQCPESSTKKDLLAYLQRIALYCHQLNITSKVKAD--VQKPTNKDLLAYLQRIALYCHQL 841
+ P +T D+++ ++IA +++ + AD +DLLAYLQRIALYCHQL
Sbjct: 651 GKGPLKNT-SDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQL 709
Query: 842 NITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVA 901
NI SKVKA+VQN+ GEL+VSG+DSA SLIQAAKNLMNAVV TVK+SYVASTKY
Sbjct: 710 NICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQ------ 763
Query: 902 LDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKKPLVRPEK 961
KS +AS P V WKMKAPEKKPLV+ EK
Sbjct: 764 ----------------------KSQGMASLNL--------PAVSWKMKAPEKKPLVKREK 793
Query: 962 PEEVRAKVRKGSQKKVQNPIKALSEFQS 989
+E + K+++ SQKK NP++ALSEF++
Sbjct: 794 QDETQTKIKRASQKKHVNPVQALSEFKA 821
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 348 bits (893), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 168/240 (70%), Positives = 206/240 (85%)
Query: 1 METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR +A
Sbjct: 13 LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRXSA 72
Query: 61 SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
S + +L QVINAA LAA+P+SK+AQEN D+FKE W+ QVRVLT+AVDDIT+IDDFLAV
Sbjct: 73 SQLEALCPQVINAALALAAKPQSKLAQENXDLFKEQWEKQVRVLTDAVDDITSIDDFLAV 132
Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
SENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +E DNYEPG+YTE+VLE
Sbjct: 133 SENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEXDNYEPGVYTEKVLE 192
Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRT 240
A K+L V P F +VE AV+ALS+ P + DENEFIDASRLVYDG+R+IR+AVL RT
Sbjct: 193 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAVLXIRT 252
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/246 (58%), Positives = 182/246 (73%), Gaps = 25/246 (10%)
Query: 480 SFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRY 539
SF+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR
Sbjct: 11 SFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRX 70
Query: 540 AASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQ 599
+AS + +L QVINAA LAA+P QS++AQEN D+FKE W+ Q
Sbjct: 71 SASQLEALCPQVINAALALAAKP------------------QSKLAQENXDLFKEQWEKQ 112
Query: 600 VRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVAN 659
VRVLT+AVDDIT+IDDFLAVSENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +
Sbjct: 113 VRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIH 172
Query: 660 VVAAEMDNYEPGIYTERVLEAIKVLRE-------QGMEAMRKMTEEDKQKIAQQVEFFRS 712
VV +E DNYEPG+YTE+VLEA K+L + +EA + D + + EF +
Sbjct: 173 VVTSEXDNYEPGVYTEKVLEATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDA 232
Query: 713 EKLKFD 718
+L +D
Sbjct: 233 SRLVYD 238
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 346 bits (888), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 166/236 (70%), Positives = 204/236 (86%)
Query: 1 METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR +A
Sbjct: 19 LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRXSA 78
Query: 61 SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
S + +L QVINAA LAA+P+SK+AQEN D+FKE W+ QVRVLT+AVDDIT+IDDFLAV
Sbjct: 79 SQLEALCPQVINAALALAAKPQSKLAQENXDLFKEQWEKQVRVLTDAVDDITSIDDFLAV 138
Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
SENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +E DNYEPG+YTE+VLE
Sbjct: 139 SENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEXDNYEPGVYTEKVLE 198
Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVL 236
A K+L V P F +VE AV+ALS+ P + DENEFIDASRLVYDG+R+IR+AVL
Sbjct: 199 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAVL 254
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/246 (58%), Positives = 182/246 (73%), Gaps = 25/246 (10%)
Query: 480 SFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRY 539
SF+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR
Sbjct: 17 SFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRX 76
Query: 540 AASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQ 599
+AS + +L QVINAA LAA+P QS++AQEN D+FKE W+ Q
Sbjct: 77 SASQLEALCPQVINAALALAAKP------------------QSKLAQENXDLFKEQWEKQ 118
Query: 600 VRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVAN 659
VRVLT+AVDDIT+IDDFLAVSENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +
Sbjct: 119 VRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIH 178
Query: 660 VVAAEMDNYEPGIYTERVLEAIKVLRE-------QGMEAMRKMTEEDKQKIAQQVEFFRS 712
VV +E DNYEPG+YTE+VLEA K+L + +EA + D + + EF +
Sbjct: 179 VVTSEXDNYEPGVYTEKVLEATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDA 238
Query: 713 EKLKFD 718
+L +D
Sbjct: 239 SRLVYD 244
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 131/478 (27%), Positives = 200/478 (41%), Gaps = 54/478 (11%)
Query: 2 ETDIPILVLIEAAR----SGNEKEV-EKAAENFADHANKLVEVANLACSMSN-NEDGVKM 55
+T PI +L AA + N +EV E+ A NF +HA +L A A ++ N+ V+
Sbjct: 604 DTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAARLGATAEKAAAVGTANKTTVEG 663
Query: 56 VRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTID 115
++ S L QV++AARIL P ++ A E+ + K W V +T VD+
Sbjct: 664 IQATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTK 723
Query: 116 DFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYT 175
L SE I +D++KC +A+ +L A +I R+ R+ V E++N E
Sbjct: 724 SLLDASEEAIKKDLDKCKVAMANMQPQMLVAGATSIARRANRILLVAKREVENSED---- 779
Query: 176 ERVLEAIKVLREQVMPNFATRVEVAVDALSTT-PPKEVD-------------ENEFIDAS 221
P F V+ A D LS T P +D + F+D+
Sbjct: 780 ---------------PKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSG 824
Query: 222 RLVYDGVREIRRAVLMNRTXXXXXXXXXXXXXQYTTSEAATMPRSKELGVDEYPDISGIT 281
+ V ++R A + T E A P L E P
Sbjct: 825 YRILGAVAKVREAFQPQEPDFPPPPPDLEHL--HLTDELA--PPKPPLPEGEVPPPRPPP 880
Query: 282 TAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMT 341
+ ++ + I Q + + E KW GNDII AK M ++M EM+
Sbjct: 881 PEEKDEEFPEQKAGEAINQPMMMAARQ---LHDEARKWSSKGNDIIAAAKRMALLMAEMS 937
Query: 342 DFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYC 401
RG K + I AK I++A + +L +++A QC + + +LL +RI
Sbjct: 938 RLVRGGSGNKRAL--IQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTIS 995
Query: 402 HQLNITSKVKADV---QNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTK 456
QL I S VKA + NIS E + L+ A+NLM +V TV+ + AS K
Sbjct: 996 TQLKILSTVKATMLGRTNISDE---ESEQATEMLVHNAQNLMQSVKETVREAEAASIK 1050
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 720 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 779
E KW GNDII AK M ++M EM+ RG K + I AK I++A + +L
Sbjct: 911 EARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRAL--IQCAKDIAKASDEVTRLA 968
Query: 780 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN 824
+++A QC + + +LL +RI QL I S VKA + TN
Sbjct: 969 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN 1013
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 22/204 (10%)
Query: 478 VFSFMETDIPILVLIEAARSG--NEKEV-EKAAENFADHANKLVEVANLACSMSN-NEDG 533
VFS T I +L + A S N +EV E+ A NF +HA +L A A ++ N+
Sbjct: 601 VFSDTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAARLGATAEKAAAVGTANKTT 660
Query: 534 VKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFK 593
V+ ++ S L QV++AARIL P +Q A E+ + K
Sbjct: 661 VEGIQATVKSARELTPQVVSAARILLRNP------------------GNQAAYEHFETMK 702
Query: 594 EAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGR 653
W V +T VD+ L SE I +D++KC +A+ +L A +I R
Sbjct: 703 NQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANMQPQMLVAGATSIARR 762
Query: 654 SARVANVVAAEMDNYEPGIYTERV 677
+ R+ V E++N E + E V
Sbjct: 763 ANRILLVAKREVENSEDPKFREAV 786
>pdb|3MYI|A Chain A, Human Metavinculin Tail Domain
Length = 172
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 312 FDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLD 371
RE KW GNDII AK M ++M EM+ RG K + I AK I++A +
Sbjct: 15 LHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVT 72
Query: 372 KLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADV---QNISGELIVSGLDS 428
+L +++A QC + + +LL +RI QL I S VKA + NIS E +
Sbjct: 73 RLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDE---ESEQA 129
Query: 429 ATSLIQAAKNLMNAVVLTVKSSYVASTK 456
L+ A+NLM +V TV+ + AS K
Sbjct: 130 TEMLVHNAQNLMQSVKETVREAEAASIK 157
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 717 FDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLD 776
RE KW GNDII AK M ++M EM+ RG K + I AK I++A +
Sbjct: 15 LHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVT 72
Query: 777 KLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN 824
+L +++A QC + + +LL +RI QL I S VKA + TN
Sbjct: 73 RLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN 120
>pdb|3VF0|A Chain A, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 283
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 312 FDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLD 371
RE KW GNDII AK M ++M EM+ RG K + I AK I++A +
Sbjct: 122 LHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVT 179
Query: 372 KLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADV---QNISGELIVSGLDS 428
+L +++A QC + + +LL +RI QL I S VKA + NIS E +
Sbjct: 180 RLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDE---ESEQA 236
Query: 429 ATSLIQAAKNLMNAVVLTVKSSYVASTK 456
L+ A+NLM +V TV+ + AS K
Sbjct: 237 TEMLVHNAQNLMQSVKETVREAEAASIK 264
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 717 FDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLD 776
RE KW GNDII AK M ++M EM+ RG K + I AK I++A +
Sbjct: 122 LHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVT 179
Query: 777 KLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN 824
+L +++A QC + + +LL +RI QL I S VKA + TN
Sbjct: 180 RLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN 227
>pdb|3H2U|A Chain A, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|C Chain C, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2V|A Chain A, Human Raver1 Rrm1 Domain In Complex With Human Vinculin
Tail Domain Vt
pdb|3H2V|B Chain B, Human Raver1 Rrm1 Domain In Complex With Human Vinculin
Tail Domain Vt
pdb|3H2V|C Chain C, Human Raver1 Rrm1 Domain In Complex With Human Vinculin
Tail Domain Vt
pdb|3H2V|D Chain D, Human Raver1 Rrm1 Domain In Complex With Human Vinculin
Tail Domain Vt
Length = 188
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 315 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 374
E KW GNDII AK M ++M EM+ RG K + I AK I++A + +L
Sbjct: 30 EARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVTRLA 87
Query: 375 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADV---QNISGELIVSGLDSATS 431
+++A QC + + +LL +RI QL I S VKA + NIS E +
Sbjct: 88 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDE---ESEQATEM 144
Query: 432 LIQAAKNLMNAVVLTVKSSYVASTK 456
L+ A+NLM +V TV+ + AS K
Sbjct: 145 LVHNAQNLMQSVKETVREAEAASIK 169
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 720 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 779
E KW GNDII AK M ++M EM+ RG K + I AK I++A + +L
Sbjct: 30 EARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVTRLA 87
Query: 780 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN 824
+++A QC + + +LL +RI QL I S VKA + TN
Sbjct: 88 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN 132
>pdb|1RKE|B Chain B, Human Vinculin Head (1-258) In Complex With Human Vinculin
Tail (879-1066)
Length = 185
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Query: 315 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 374
E KW GNDII AK M ++M EM+ RG K + I AK I++A + +L
Sbjct: 27 EARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVTRLA 84
Query: 375 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADV---QNISGELIVSGLDSATS 431
+++A QC + + +LL +RI QL I S VKA + NIS E +
Sbjct: 85 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDE---ESEQATEM 141
Query: 432 LIQAAKNLMNAVVLTVKSSYVASTK 456
L+ A+NLM +V TV+ + AS K
Sbjct: 142 LVHNAQNLMQSVKETVREAEAASIK 166
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 720 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 779
E KW GNDII AK M ++M EM+ RG K + I AK I++A + +L
Sbjct: 27 EARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKASDEVTRLA 84
Query: 780 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN 824
+++A QC + + +LL +RI QL I S VKA + TN
Sbjct: 85 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN 129
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues
1- 1066)
pdb|1TR2|B Chain B, Crystal Structure Of Human Full-Length Vinculin (Residues
1- 1066)
Length = 1066
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 2 ETDIPILVLIEAARSG----NEKEV--EKAAENFADHANKLVEVANLACSMSN-NEDGVK 54
+T PI +L AA + N +EV E+AA NF +H+ KL A A ++ N+ V+
Sbjct: 601 DTTTPIKLLAVAATAPPDAPNREEVFDERAA-NFENHSGKLGATAEKAAAVGTANKSTVE 659
Query: 55 MVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTI 114
++ + + L QV++AARIL P ++ A E+ + K W V T VD+
Sbjct: 660 GIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETXKNQWIDNVEKXTGLVDEAIDT 719
Query: 115 DDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIY 174
L SE I +D++KC +A L A +I R+ R+ V E++N E +
Sbjct: 720 KSLLDASEEAIKKDLDKCKVAXANIQPQXLVAGATSIARRANRILLVAKREVENSEDPKF 779
Query: 175 TERVLEAIKVLREQVMP 191
E V A L + + P
Sbjct: 780 REAVKAASDELSKTISP 796
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 315 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 374
E KW GNDII AK ++ E + RG K + I AK I++A + +L
Sbjct: 908 EARKWSSKGNDIIAAAKRXALLXAEXSRLVRGGSGTKRAL--IQCAKDIAKASDEVTRLA 965
Query: 375 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADV---QNISGELIVSGLDSATS 431
+++A QC + + +LL +RI QL I S VKA NIS E +
Sbjct: 966 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATXLGRTNISDE---ESEQATEX 1022
Query: 432 LIQAAKNLMNAVVLTVKSSYVASTK 456
L+ A+NL +V TV+ + AS K
Sbjct: 1023 LVHNAQNLXQSVKETVREAEAASIK 1047
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 481 FMETDIPILVLIEAARSG----NEKEV--EKAAENFADHANKLVEVANLACSMSN-NEDG 533
F +T PI +L AA + N +EV E+AA NF +H+ KL A A ++ N+
Sbjct: 599 FSDTTTPIKLLAVAATAPPDAPNREEVFDERAA-NFENHSGKLGATAEKAAAVGTANKST 657
Query: 534 VKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFK 593
V+ ++ + + L QV++AARIL P +Q A E+ + K
Sbjct: 658 VEGIQASVKTARELTPQVVSAARILLRNP------------------GNQAAYEHFETXK 699
Query: 594 EAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGR 653
W V T VD+ L SE I +D++KC +A L A +I R
Sbjct: 700 NQWIDNVEKXTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAXANIQPQXLVAGATSIARR 759
Query: 654 SARVANVVAAEMDNYEPGIYTERV 677
+ R+ V E++N E + E V
Sbjct: 760 ANRILLVAKREVENSEDPKFREAV 783
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 720 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 779
E KW GNDII AK ++ E + RG K + I AK I++A + +L
Sbjct: 908 EARKWSSKGNDIIAAAKRXALLXAEXSRLVRGGSGTKRAL--IQCAKDIAKASDEVTRLA 965
Query: 780 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN 824
+++A QC + + +LL +RI QL I S VKA TN
Sbjct: 966 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATXLGRTN 1010
>pdb|1QKR|A Chain A, Crystal Structure Of The Vinculin Tail And A Pathway For
Activation
pdb|1QKR|B Chain B, Crystal Structure Of The Vinculin Tail And A Pathway For
Activation
Length = 188
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 315 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 374
E KW GNDII AK ++ E + RG K + I AK I++A + +L
Sbjct: 30 EARKWSSKGNDIIAAAKRXALLXAEXSRLVRGGSGNKRAL--IQCAKDIAKASDEVTRLA 87
Query: 375 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADV---QNISGELIVSGLDSATS 431
+++A QC + + +LL +RI QL I S VKA NIS E +
Sbjct: 88 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATXLGRTNISDE---ESEQATEX 144
Query: 432 LIQAAKNLMNAVVLTVKSSYVASTK 456
L+ A+NL +V TV+ + AS K
Sbjct: 145 LVHNAQNLXQSVKETVREAEAASIK 169
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 720 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLT 779
E KW GNDII AK ++ E + RG K + I AK I++A + +L
Sbjct: 30 EARKWSSKGNDIIAAAKRXALLXAEXSRLVRGGSGNKRAL--IQCAKDIAKASDEVTRLA 87
Query: 780 RQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN 824
+++A QC + + +LL +RI QL I S VKA TN
Sbjct: 88 KEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATXLGRTN 132
>pdb|3U4G|A Chain A, The Structure Of Cobt From Pyrococcus Horikoshii
Length = 337
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 862 GLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPR-----------QNQVALDSATSLIQ 910
G + + +AA+ L N +L V+ + P + + AL +I+
Sbjct: 63 GHPTPAIITKAARELSNFPILVVRGGTYLAPLIPHVHISNVVGRDFRREPALPEVEVIIE 122
Query: 911 AAKNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKKPLVRPEKPEEVRAKVR 970
AK L+ + + + V P A I+ W + K PE P+E++ KV
Sbjct: 123 RAK-LLGKELEKIANEIVIGESTPGGTTTAQAIL-WALGYEAKTSSASPENPQELKEKVI 180
Query: 971 KGSQKKVQ--------NPIKALSEFQSP 990
K K+V P++AL EF P
Sbjct: 181 KEGFKRVGIEKGGLKDKPLEALKEFGDP 208
>pdb|1OJQ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus
pdb|1OJZ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus In With
Nad
Length = 212
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 315 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINA-AKKISEAGTNLDKL 373
E KW GN +I AK+ M + ++T+ P+ T + N K+SE N+ +
Sbjct: 11 EATKW---GNSLIKSAKYSSKDKMAIYNYTKNSSPINTPLRSANGDVNKLSE---NIQEQ 64
Query: 374 TRQIADQCPESSTKKDLLAY 393
RQ+ +S T + Y
Sbjct: 65 VRQLDSTISKSVTPDSVYVY 84
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 720 EVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINA-AKKISEAGTNLDKL 778
E KW GN +I AK+ M + ++T+ P+ T + N K+SE N+ +
Sbjct: 11 EATKW---GNSLIKSAKYSSKDKMAIYNYTKNSSPINTPLRSANGDVNKLSE---NIQEQ 64
Query: 779 TRQIADQCPESSTKKDLLAY 798
RQ+ +S T + Y
Sbjct: 65 VRQLDSTISKSVTPDSVYVY 84
>pdb|1A0F|A Chain A, Crystal Structure Of Glutathione S-Transferase From
Escherichia Coli Complexed With Glutathionesulfonic Acid
pdb|1A0F|B Chain B, Crystal Structure Of Glutathione S-Transferase From
Escherichia Coli Complexed With Glutathionesulfonic Acid
pdb|1N2A|A Chain A, Crystal Structure Of A Bacterial Glutathione Transferase
From Escherichia Coli With Glutathione Sulfonate In The
Active Site
pdb|1N2A|B Chain B, Crystal Structure Of A Bacterial Glutathione Transferase
From Escherichia Coli With Glutathione Sulfonate In The
Active Site
Length = 201
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 955 PLVRPEKPEEVRAKVRKGSQKKVQNPIKALSE 986
PL RP+ PEE + VR +KK+Q +AL +
Sbjct: 111 PLFRPDTPEEYKPTVRAQLEKKLQYVNEALKD 142
>pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box In Human Upstream
Binding Factor
Length = 99
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 35/60 (58%)
Query: 274 YPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHM 333
+P++S + + +K E ++K + ++ F+ EK +F+R +A++ + D+I AK +
Sbjct: 33 HPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKL 92
>pdb|1SJ8|A Chain A, Crystal Structure Of Talin Residues 482-789
Length = 308
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
Query: 869 LIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNA 918
L+QAAK L AV ++S+ AS + PRQN L+QAA N+ A
Sbjct: 127 LLQAAKGLAGAVSELLRSAQPASAE-PRQN---------LLQAAGNVGQA 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,147,043
Number of Sequences: 62578
Number of extensions: 882743
Number of successful extensions: 3324
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3235
Number of HSP's gapped (non-prelim): 70
length of query: 994
length of database: 14,973,337
effective HSP length: 108
effective length of query: 886
effective length of database: 8,214,913
effective search space: 7278412918
effective search space used: 7278412918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)