Query psy5460
Match_columns 994
No_of_seqs 269 out of 321
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:08:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3681|consensus 100.0 8E-100 2E-104 882.8 62.5 703 49-988 67-835 (835)
2 PF01044 Vinculin: Vinculin fa 100.0 3.8E-95 8E-100 906.0 68.7 792 17-954 33-968 (968)
3 KOG3681|consensus 100.0 3.8E-93 8.2E-98 827.2 41.7 422 1-463 378-800 (835)
4 PF01044 Vinculin: Vinculin fa 100.0 4.9E-87 1.1E-91 833.2 38.7 453 1-464 491-957 (968)
5 PF05482 Serendipity_A: Serend 98.0 0.0012 2.7E-08 77.8 25.2 210 4-238 265-476 (552)
6 PF05482 Serendipity_A: Serend 98.0 0.0021 4.5E-08 76.0 25.9 211 355-623 170-382 (552)
7 PF01608 I_LWEQ: I/LWEQ domain 94.9 0.31 6.7E-06 49.7 11.5 121 758-924 9-129 (152)
8 KOG4261|consensus 93.8 1.5 3.1E-05 54.2 15.8 231 323-564 621-871 (1003)
9 PF08913 VBS: Vinculin Binding 93.1 1.4 2.9E-05 43.8 11.8 93 16-108 28-120 (125)
10 PF01608 I_LWEQ: I/LWEQ domain 91.8 2.1 4.5E-05 43.8 11.6 90 353-455 9-98 (152)
11 PF08913 VBS: Vinculin Binding 87.8 5.3 0.00012 39.7 10.6 94 137-235 27-120 (125)
12 smart00307 ILWEQ I/LWEQ domain 85.2 13 0.00027 39.9 12.4 122 758-924 56-177 (200)
13 smart00307 ILWEQ I/LWEQ domain 83.7 25 0.00054 37.8 13.8 123 430-560 8-145 (200)
14 KOG4261|consensus 80.3 88 0.0019 39.6 18.2 200 22-227 656-888 (1003)
15 KOG0980|consensus 75.2 2.4E+02 0.0052 36.5 20.2 104 340-458 824-927 (980)
16 PF12026 DUF3513: Domain of un 46.7 4.2E+02 0.0091 28.9 13.9 97 134-235 112-209 (210)
17 KOG0980|consensus 41.0 9.6E+02 0.021 31.4 34.9 121 757-923 834-954 (980)
18 PF13675 PilJ: Type IV pili me 40.6 1.3E+02 0.0028 28.3 7.9 83 21-107 13-95 (112)
19 PF02074 Peptidase_M32: Carbox 39.1 5.1E+02 0.011 31.8 14.2 118 67-194 60-186 (494)
20 PF09141 Talin_middle: Talin, 37.0 4.9E+02 0.011 27.2 11.7 56 52-112 12-68 (161)
21 PF08919 F_actin_bind: F-actin 36.8 2.1E+02 0.0045 28.0 8.5 52 358-409 32-83 (110)
22 PF08919 F_actin_bind: F-actin 33.9 2.4E+02 0.0052 27.6 8.4 54 762-815 31-84 (110)
23 COG4192 Signal transduction hi 25.9 1.3E+03 0.028 28.3 20.0 62 727-788 438-518 (673)
24 PF14644 DUF4456: Domain of un 21.6 1E+03 0.022 25.6 12.9 52 569-620 141-192 (208)
25 PF12026 DUF3513: Domain of un 20.7 1.1E+03 0.024 25.7 15.0 84 23-107 124-208 (210)
26 PF09141 Talin_middle: Talin, 20.2 3.8E+02 0.0082 28.0 7.4 48 757-809 113-160 (161)
No 1
>KOG3681|consensus
Probab=100.00 E-value=8.2e-100 Score=882.80 Aligned_cols=703 Identities=43% Similarity=0.562 Sum_probs=530.5
Q ss_pred ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHhHHHHHHH
Q psy5460 49 NEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILED 128 (994)
Q Consensus 49 d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~sk~A~Enle~l~~~W~~~v~~L~~avDditd~~dFL~vSe~~I~~d 128 (994)
|+.....+-.|...++..+.-+..+++.+..+|.|-..+.+|=.=-+..-..|.+|.-+.|.+- +.-.|. +...++..
T Consensus 67 ~~~l~~em~~A~~~V~~~~~~m~~aa~~~~~Dp~s~~~R~~~i~aaR~LLsavtrlLllaD~~d-V~~ii~-~~~~V~~~ 144 (835)
T KOG3681|consen 67 DQILKQEMPAALEEVRKAGDLMKQAAREFDDDPCSVPKRGNLIRAARGLLSAVTRLLLLADMVD-VKKIIR-SCKKVLET 144 (835)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHH-HHHHHHHH
Confidence 6667778888889999999999999999999999999999999888888899999998887654 333332 22233333
Q ss_pred HHHHHHHHhcCChhHHHhHHHHHHHHH-hHHHHHHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcC
Q psy5460 129 VNKCVLALQEGDADILDRTAGAIRGRS-ARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTT 207 (994)
Q Consensus 129 ~~~c~~Ai~~~d~~~~~~~a~~I~gra-~RV~~Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~n 207 (994)
+...+ .-+.-+.|++.-..+-+-. +--.++.+|.-|- -||..|..+-.+-..|+. ..|++--+-+.++ ..
T Consensus 145 l~~le---~~~t~~dlv~~~k~lg~~m~~l~~~~~~RqqeL-k~~~~rd~laaar~~lk~-~~p~L~task~~l----rh 215 (835)
T KOG3681|consen 145 LEVLE---NVNTMQDLVQIFKQLGPEMVKLAHMAGKRQQEL-KDPKHRDQLAAARAVLKK-LAPMLLTASKTCL----RH 215 (835)
T ss_pred HHHHH---hhccHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHH-HhHHHHHHHHHHH----cC
Confidence 33322 2344466655554444433 2233445555554 578999999999999985 5588876666665 66
Q ss_pred CCCchhhhHHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccccccccCCCCccCCCCCCCCccCCCchhHHh
Q psy5460 208 PPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAM 287 (994)
Q Consensus 208 p~~~~~~~~f~da~~~l~~~V~~vr~av~~~~~p~el~~~~s~~~~~~~~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~ 287 (994)
|+......+=-.....+.+++..|-.++.... |.+- .+++ + +. +-.+.
T Consensus 216 p~~~~a~~NRd~v~~~m~~aln~I~~v~q~~~-~~~~---~~~~---------------~-----------~~--~~~l~ 263 (835)
T KOG3681|consen 216 PNCESAKKNRDYVFDQMSDALNEIIRVLQLTS-PDED---TSES---------------S-----------GS--AGKLA 263 (835)
T ss_pred ccHHHHHhhhhHHHHHHHHHHHHHHHHHhcCC-CCCC---cchh---------------c-----------cc--hhHHH
Confidence 77665555545567888888888888775432 2210 0010 0 00 00000
Q ss_pred hcCChHHHHHHHHHHHHHHhhhhhhHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhh
Q psy5460 288 RKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAG 367 (994)
Q Consensus 288 ~~lp~~e~~ki~~~~~~~~~~a~~l~~E~~kW~~~~N~IV~~Ak~Ma~~m~~M~~ftrg~G~l~tk~dli~~Ak~iae~~ 367 (994)
..+... +..|...+..++ +.--|+-|. +.-+.+|.-|-.|++.+
T Consensus 264 ~a~~~~-~~~~~~~~l~~~----------------------------------~~~~r~~le-~~le~Iis~aa~~aDs~ 307 (835)
T KOG3681|consen 264 SALIDF-KKNIAIDPLTNP----------------------------------EARSRPSLE-VRLEQIISGAALMADSC 307 (835)
T ss_pred HHHhHH-HHHHHhhhhhch----------------------------------hhccCchHH-HHHHHHHHHHHHHHHHH
Confidence 000000 111111122221 111111111 12223344444444333
Q ss_pred hhHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccc-ccccchhccCCchHHHHHHHHHHHHHHHHH
Q psy5460 368 TNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQN-ISGELIVSGLDSATSLIQAAKNLMNAVVLT 446 (994)
Q Consensus 368 ~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~-~g~e~~~s~~~~~~~lI~~AknLm~~V~~t 446 (994)
- .|.| |..+.+.|. .+.++|+-+- ...++ .|. .+..+.+-....++.
T Consensus 308 ~-------------~d~r-reri~a~~~---al~q~l~d~l---~E~~~~~~~------k~~~~~l~~ai~~l~------ 355 (835)
T KOG3681|consen 308 C-------------RDLR-RERIVAECN---ALRQALQDLL---SEYQSNAGR------KGRSPALELAIDQLT------ 355 (835)
T ss_pred h-------------HHHH-HHHHhhhhH---HHHHHHHHHH---HHHHHHhhc------cccChhHHHHHHHHH------
Confidence 2 2222 444555444 3334433220 01111 111 122233444444444
Q ss_pred HHHHHHHhccccchhhhhhhhhHHHHhhhhhcccccccchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5460 447 VKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACS 526 (994)
Q Consensus 447 v~~~~~as~K~~~~~~l~~~~~~avv~~v~~~dsF~dt~~PL~~L~~Aa~~Gd~e~~~~~a~~F~eha~~l~evA~lv~~ 526 (994)
++..+|++.+++++++||+ |+|+|+++||..|++|++.|++++|.+|+.+|++|+++|++||+|+|+
T Consensus 356 -----------kkl~dLrrqLr~a~~d~iS--d~fldt~tpllll~eaa~~G~ee~~~eya~~f~eha~~lvevarl~~~ 422 (835)
T KOG3681|consen 356 -----------KKLKDLKRQLRKAATDHVS--DSFLDTTTPLLLLIEAAKAGNEEEVKEYAANFREHANKLVEVARLACS 422 (835)
T ss_pred -----------HHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999 779999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHhhhhHHHHHhhhhhhHHHhhhhHHHHHHHHHHHHHHHHh
Q psy5460 527 MSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEA 606 (994)
Q Consensus 527 ~s~ne~~~~~i~~aa~~le~L~PQVI~Aar~l~~~P~sk~A~en~e~~~~~w~~~~~~~~e~~~~~k~~W~~~v~~L~~~ 606 (994)
+|+|+++++.+++++.|++.||||||+||++|+.||.||+|+|||+. ||++|.++|+.|+.+
T Consensus 423 is~n~~~v~~v~~sa~ql~~L~Pqvi~Aa~~l~~~P~sk~A~enme~------------------~k~~w~~~V~~lt~a 484 (835)
T KOG3681|consen 423 ISNNEEGVKIVQHSAAQLESLCPQVINAARILAARPGSKAAQENMET------------------YKNQWEDQVRVLTTA 484 (835)
T ss_pred cccccchhHHHHHHHHHHHhcchHHHHHHHHHHhCccchhHHHHHHH------------------HHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998886 667899999999999
Q ss_pred hhhhcChHHHHHhhHHHHHHHHHHHHHHHhcCChhhhhhhhhHHhhhhhHHHHHHHHhhhcCCCCcchHHHHHHHHHHHH
Q psy5460 607 VDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLRE 686 (994)
Q Consensus 607 vDdit~~~dFl~vse~~i~~d~~~c~~Ai~~~~~~~l~~~a~~I~~ra~RV~~va~~e~~n~edp~~~~~v~~av~~l~~ 686 (994)
||++|+++||+++||.||+.|+++|..|+..++|+.+++++|.|+||++||+.|+++||+|+|||.|+++|+++++.|.+
T Consensus 485 vd~~t~~~dfl~vSE~hi~ed~~kc~~ai~~~~~~~l~~~a~~i~~ra~rv~~v~~aE~dn~e~~~yte~v~~a~~~l~~ 564 (835)
T KOG3681|consen 485 VDDITDIDDFLAVSEEHILEDVNKCGVAIQSIDPQMLDRTAGAIRGRANRVLHVVKAEMDNYEPPVYTERVKEAVDVLSE 564 (835)
T ss_pred hcccCCchhHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhhhhhhhhHHHHHHHHHHhccCCchhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHH-----------------------------------HHhh----------------------------cCCHHHHHHH
Q psy5460 687 QGM-----------------------------------EAMR----------------------------KMTEEDKQKI 703 (994)
Q Consensus 687 ~~~-----------------------------------ea~~----------------------------~l~~e~k~kI 703 (994)
+++ ++++ .|.. .++||
T Consensus 565 ~v~~~~~d~~~~a~e~~d~~~~~~~~~n~~i~a~~~V~d~i~~~~~~~~~~~~E~l~~~~~~~t~~~~~~~m~~-~~eki 643 (835)
T KOG3681|consen 565 TVMPQFGDAVSVAVEILDPDKAFRGEENRFLDASRLVYDAIRRTPEDLPDPDLEALELARSKPTPETDREKMRK-PQEKI 643 (835)
T ss_pred ccchhHHHHHHHHHHhcCchhcccchhhHHhhhhHHHHhcccCCCCCCChHhHhhhhccccCCCchhhhhhccC-CHhhH
Confidence 531 2222 0111 13499
Q ss_pred HHhhhhhhhhhhhhHHHhhhhcC-CCchHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5460 704 AQQVEFFRSEKLKFDREVAKWDD-TGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQI 782 (994)
Q Consensus 704 a~~~~~~~~~~~~l~~E~~kWd~-~~NdIv~~ak~Ma~~m~~m~~ftrg~g~lktt~dli~~Ak~iae~~~~l~~~a~~~ 782 (994)
+++++.|..++++||+|++|||| +|||||.+||+||+|||+||+||||+||||||+|||++||+||++|+++++++|+|
T Consensus 644 a~~~~~~~~~~s~ld~Ev~KWdd~~~NDII~~AK~M~~im~~Mt~FTRG~GPlKtt~DlI~aAk~iAeag~~m~rlarei 723 (835)
T KOG3681|consen 644 AKQGLPFKLLTSKLDAEVEKWDDKSGNDIIALAKNMCSIMYEMTDFTRGDGPLKTTSDLISAAKKIAEAGSRMTRLAREI 723 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHHHHHHHhhhhhhhhhhhhhhccccccccccc
Q psy5460 783 ADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSG 862 (994)
Q Consensus 783 a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 862 (994)
|+||||+++|++||+||+|||+|||||||+|||||+++ +++|++
T Consensus 724 a~qcpDs~~k~dLLa~lerIpl~c~QLqI~Skvka~~~--------------------------------~~~~~~---- 767 (835)
T KOG3681|consen 724 AKQCPDSAIKTDLLAYLERIPLYCHQLQICSKVKATVK--------------------------------NLGGEL---- 767 (835)
T ss_pred HHhCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--------------------------------hccchh----
Confidence 99999999999999999999999999998888876654 445554
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhhhhHHHHHHHhhhHHHHHHhhccccccccCCCCCCCCcc
Q psy5460 863 LDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVASP 942 (994)
Q Consensus 863 ~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (994)
+|||.|||||++|++||+++|+||+||.+..++ .++
T Consensus 768 -----slIq~tknlmn~vvqtvk~syv~stk~~~~~~~---------------------------------------~v~ 803 (835)
T KOG3681|consen 768 -----SLIQATKNLMNEVVQTVKASYVAATKLQQSVKG---------------------------------------TVR 803 (835)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------------------------ccc
Confidence 677777777777777777777777777664221 111
Q ss_pred eeEeeccCCCCCCCCCCCChhHHHHHhhhccccccCChhhhhhhcc
Q psy5460 943 IVVWKMKAPEKKPLVRPEKPEEVRAKVRKGSQKKVQNPIKALSEFQ 988 (994)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (994)
.. +++|++..++||++|+|++++|++++++|+
T Consensus 804 ~~--------------~~~~e~~~a~iR~~s~k~~~~~v~~~~~~~ 835 (835)
T KOG3681|consen 804 NG--------------REKAEDASAKIRRDSAKKTLQPVQALSEFQ 835 (835)
T ss_pred cc--------------ccchhhhhhhHhhhhhhccccHHHhccccC
Confidence 11 899999999999999999999999999996
No 2
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=100.00 E-value=3.8e-95 Score=905.99 Aligned_cols=792 Identities=35% Similarity=0.477 Sum_probs=583.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy5460 17 GNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEA 96 (994)
Q Consensus 17 G~ee~~~~~a~~F~eha~klvevA~lv~a~s~d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~sk~A~Enle~l~~~ 96 (994)
|....+..-++.+..-.+.+++++.-.+.-+.|+.....+..|...++.=+..+..++..|..+|.|..+++.|=.=-+.
T Consensus 33 ~~~~~~~~~~~aV~~Av~~lv~vg~~ia~~~~d~~lk~eM~~A~~~v~~ag~~l~~aa~~l~~dP~s~~~R~~lv~aar~ 112 (968)
T PF01044_consen 33 GASPDLQRPVQAVEEAVENLVEVGEEIANESPDEILKQEMPEACEEVRDAGKNLLQAAQELRDDPCSSPKRKKLVRAARG 112 (968)
T ss_dssp STSGGTHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34446677789999999999999999988888888999999999999999999999999999999999999988777777
Q ss_pred HHHHHHHHHHHHhhhcChHHHHHHhHHHHHHHHHHHHHHHhc----CChhHHHhHHHHHHHHHhHHHHHHHhhhhcCCCc
Q psy5460 97 WDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQE----GDADILDRTAGAIRGRSARVANVVAAEMDNYEPG 172 (994)
Q Consensus 97 W~~~v~~L~~avDditd~~dFL~vSe~~I~~d~~~c~~Ai~~----~d~~~~~~~a~~I~gra~RV~~Vak~e~dnsedp 172 (994)
--..|.+|.-++|.+. ...|....++|...+.. .+.+.|+.....+-.....+...+.+...--.||
T Consensus 113 lL~~vt~lLllaD~~~---------Vr~Ii~~~~~v~~~l~~~e~~~s~~el~~~~~~f~~~~~~l~~~~~~Rq~eL~~~ 183 (968)
T PF01044_consen 113 LLSGVTRLLLLADMAD---------VRKIIRACKKVLDYLERLESAESMEELVQAFKDFGPEMVELAKLTGRRQQELKDP 183 (968)
T ss_dssp HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHGCT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHCTBSSH
T ss_pred cccccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7788888888877765 33455555555554443 3447788888888777777777666666666899
Q ss_pred cchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcCC--CCchhhhHHHHhHHHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q psy5460 173 IYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTP--PKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIE 250 (994)
Q Consensus 173 ~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~np--~~~~~~~~f~da~~~l~~~V~~vr~av~~~~~p~el~~~~s~ 250 (994)
.+|+.+..+...|+..+ |++..+.+.++.- ..+| ....+..+=-.....+.+++.+|-.++.... +++ +..+++
T Consensus 184 ~~r~~l~~a~~~Lk~~~-p~L~ts~k~~l~h-~~~p~~~~~~a~~nRd~v~~~m~~al~~Ii~vlq~~~-~de-d~~~~~ 259 (968)
T PF01044_consen 184 EHRDQLAAARAVLKKCS-PMLLTSSKTYLRH-PNDPGKEVEEARENRDYVFKQMRDALNEIIRVLQLTS-YDE-DEWDSD 259 (968)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HTSTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTHTS-SCS-CCCCHH
T ss_pred ccccccccccccccccc-ccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccc-cccccc
Confidence 99999999999999766 7776666666522 3336 3333333334468899999999988886554 321 100100
Q ss_pred -ccc---cc-----cccccc--cCCCCccCCCCCCCCccCC-----CchhHHhhcCChHHHHHHHHHHHHHHhhhhhhHH
Q psy5460 251 -LDD---QY-----TTSEAA--TMPRSKELGVDEYPDISGI-----TTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDR 314 (994)
Q Consensus 251 -~~~---~~-----~~~~a~--~~~~~s~~~~~~~~~~~~~-----~~~~~~~~~lp~~e~~ki~~~~~~~~~~a~~l~~ 314 (994)
+.. .. .+..|- ..-+.. +.+. ....+ .|..-.-..-.|.+++.|..-+......+..+ .
T Consensus 260 ~~~~~~~~~~~~~~~l~~a~d~l~~~~a--~~g~--~ge~~~r~I~~~a~~~~~~~~p~~~~~l~~~~~~~~~~~d~~-~ 334 (968)
T PF01044_consen 260 DLEVMKSALAGIGSKLASALDWLDDPNA--SPGG--AGEKAIRQIVDPATYIAERCRPSLEERLERIISGAALMADSL-C 334 (968)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHCSTTS---TTT--CCHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccccccccccccc--cccc--cccccccccccccccccccccccccccccccccccccccccc-c
Confidence 000 00 000000 000000 0000 00000 01000001122233344443333322222222 1
Q ss_pred Hhh-hhccCCchHHHHHHHHHHHHHHH----HHHhcc------CCCCCCHHHHHHHHH------------HHHHhhhhHH
Q psy5460 315 EVA-KWDDTGNDIIVLAKHMCMIMMEM----TDFTRG------RGPLKTTMDVINAAK------------KISEAGTNLD 371 (994)
Q Consensus 315 E~~-kW~~~~N~IV~~Ak~Ma~~m~~M----~~ftrg------~G~l~tk~dli~~Ak------------~iae~~~~l~ 371 (994)
+.+ +-.+..+.-+..++.++..+.++ .+...+ ..+-.+-.+=+.+|. .+..+...+.
T Consensus 335 ~~~~~~~~~~~~~~~~a~~l~e~~~~l~~~v~~al~~~~~~~~~~~~~~~~~kl~qA~~wl~~p~~dd~g~g~~AL~~lv 414 (968)
T PF01044_consen 335 TRRERGEGASPQAIVLARQLAECNGELSQLVEQALQNVEKSGGAQAAHTVAGKLEQAQRWLANPGVDDGGAGRQALRDLV 414 (968)
T ss_dssp HHCHHCHGGSHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTSS--SCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHH
Confidence 111 11133455555555555555211 111111 011123333344442 3555667788
Q ss_pred HHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccccccccccchhccCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5460 372 KLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSY 451 (994)
Q Consensus 372 ~lar~iA~~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~~g~e~~~s~~~~~~~lI~~AknLm~~V~~tv~~~~ 451 (994)
.-++.+|+.|. +..|.+++..|++|..+.+||.-+.. .+.| ..+. ++.+...+.
T Consensus 415 ~e~~~~A~~~~-~~~R~~Il~lc~~i~~l~~qL~dL~~-----~~~~---------~spe----a~~la~~L~------- 468 (968)
T PF01044_consen 415 EEARKLADSSD-PEEREEILELCDEIEQLTNQLADLEM-----RGEG---------DSPE----AKALAEQLS------- 468 (968)
T ss_dssp HHHHHHHHTSS-HHHHHHHHHHHHHHHHHHHHHHHHCH-----CSCC---------SSHH----HHHHHHHHH-------
T ss_pred HHHHHHHhccc-cchHHhHHHHHHHHHHhcchhhhhhh-----ccCC---------Cccc----ccccccchh-------
Confidence 88999999999 45799999999999999999964421 1111 1122 222221111
Q ss_pred HHhccccchhhhhhhhhHHHHhhhhhcccccccchhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5460 452 VASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARS-----GNEKEVEKAAENFADHANKLVEVANLACS 526 (994)
Q Consensus 452 ~as~K~~~~~~l~~~~~~avv~~v~~~dsF~dt~~PL~~L~~Aa~~-----Gd~e~~~~~a~~F~eha~~l~evA~lv~~ 526 (994)
.+..+|++.+++++++||+ |+|+|+++||+.|++|+.. ||++.|++++..|++|+++|++||+++|+
T Consensus 469 ------~~l~~L~~~l~~a~~~qv~--d~F~d~~~pL~~L~~Aa~~~~~~~g~e~~~~~~a~~F~~ha~~l~~vA~lva~ 540 (968)
T PF01044_consen 469 ------QKLDDLRQQLQKAVVDQVS--DTFTDTTTPLKELVEAAKAPSGTPGREENFEEKAQNFQEHADQLVEVARLVAA 540 (968)
T ss_dssp ------HHHHHHHHHHHHHHHCHHH--HHTTSSSHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577899999999999999 6699999999999999998 99999999999999999999999999999
Q ss_pred cC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHhhhhHHHHHhhhhhhHHHhhhhHHHHHHHHHHHHHHHH
Q psy5460 527 MS-NNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTE 605 (994)
Q Consensus 527 ~s-~ne~~~~~i~~aa~~le~L~PQVI~Aar~l~~~P~sk~A~en~e~~~~~w~~~~~~~~e~~~~~k~~W~~~v~~L~~ 605 (994)
+| +|+..++.|++++.+++.|+||||+||++|+.||+|++|+|||++|+ ++|.+++++|++
T Consensus 541 ~s~~d~~~v~~I~~aa~~l~~L~pqvi~Aa~~l~~~P~sk~A~e~le~~~------------------~~W~~~v~~L~~ 602 (968)
T PF01044_consen 541 MSCTDEETVKEIRHAAEQLEKLTPQVINAARILAANPSSKAAKEHLEVFR------------------EAWEDAVEDLTE 602 (968)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTSHHHHHHHHHHH------------------HHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH------------------HHHHHHHHHHHH
Confidence 98 89999999999999999999999999999999999999999999755 578999999999
Q ss_pred hhhhhcChHHHHHhhHHHHHHHHHHHHHHHhcCChhhhhhhhhHHhhhhhHHHHHHHHhhhcCCCCcchHHHHHHHHHHH
Q psy5460 606 AVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLR 685 (994)
Q Consensus 606 ~vDdit~~~dFl~vse~~i~~d~~~c~~Ai~~~~~~~l~~~a~~I~~ra~RV~~va~~e~~n~edp~~~~~v~~av~~l~ 685 (994)
+||+|+|++|||++|+++|.+|+++|++||.+++|+.|++++++|+||++||++|+++|++|++||.|+++|+++++.|+
T Consensus 603 ~vd~i~d~~eFl~vSe~~i~~d~~~c~~Al~~~d~~~~~~~a~~I~~ra~rV~~va~~e~dn~eDp~y~~~v~~a~~~L~ 682 (968)
T PF01044_consen 603 AVDEITDVDEFLAVSEEHILKDVDKCEKALRSGDPQELDRAASSIAGRANRVIQVAKREMDNSEDPIYRNRVLEAIDQLE 682 (968)
T ss_dssp HHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHH-------------------------------------HH-------------------------------------
Q psy5460 686 EQGM-------------------------------------EA------------------------------------- 691 (994)
Q Consensus 686 ~~~~-------------------------------------ea------------------------------------- 691 (994)
+... ++
T Consensus 683 ~~i~~~v~~ak~va~n~~d~~a~~~~~~~~~~li~av~~V~~av~~~~~~~L~~~~~~~~~~~~~~e~ed~~a~~r~~~~ 762 (968)
T PF01044_consen 683 QAIPPMVAAAKEVATNPLDKNAQQQFRESNKELIDAVRQVRDAVRDIRHPVLMNRSPEDLPSDSELEQEDEQAPPRSPSP 762 (968)
T ss_dssp HTHHHHHHHHHHHHHHHTTTTTHHHHCHHCCHHHHHHHHHHHHHCHHHHHHC---S------------------------
T ss_pred HHHHHHHHHHHHHHHCcCCcchhhhHHHHHHHHHHHHHHHHHHccCCCcchhcccCcccccCCCCCccccCCCCCCCCCc
Confidence 6320 00
Q ss_pred -------------------hhcCCHHHHHHHHHhhhhhhhhhhhhHHHhhhhcCCCchHHHHHHHHHHHHHHHHHhhccC
Q psy5460 692 -------------------MRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGR 752 (994)
Q Consensus 692 -------------------~~~l~~e~k~kIa~~~~~~~~~~~~l~~E~~kWd~~~NdIv~~ak~Ma~~m~~m~~ftrg~ 752 (994)
+.++++|+|.+|++++.+|...+++||+|++||+|++||||++||+||.|||+||+||||+
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~l~~e~~kW~~~~Ndiv~~ak~Ma~~m~~m~~f~rg~ 842 (968)
T PF01044_consen 763 EDTEPPPRPPPPEETDREKMSRLPEEEKAKIAKQVQPIKEAASELDQEVEKWDDQGNDIVALAKSMASMMMEMSQFTRGE 842 (968)
T ss_dssp -----------TTS---S-----S-SSSTTCCCH-HHHHHHHHHHHHHHTTB-STT-HHHHHHHHHHHHHHHHHHHTTS-
T ss_pred hhhccCCCCCCCcccchHHHHhCCHHHHhChhhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0123334444556666788888999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhhHHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHH
Q psy5460 753 GPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQ 832 (994)
Q Consensus 753 g~lktt~dli~~Ak~iae~~~~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~ 832 (994)
| |||+|||++||+||++|++|++++|+||++|||+++|++||+||++||||||||||+|+|||+++|.
T Consensus 843 g--~~~~dli~~Ak~ia~~~~~~~~~ar~ia~~c~d~~~k~~Ll~~~~~i~~~~~QL~i~s~VKa~~~~~---------- 910 (968)
T PF01044_consen 843 G--KTKKDLITAAKKIAEEGNKLTKLAREIADQCPDKRLKEDLLAYLERIPTICQQLKIISTVKADVQGS---------- 910 (968)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSBHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTT----------
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHCcchhHHHHHHhHeeecHHhcCC----------
Confidence 9 9999999999999999999999999999999999999999999999999999999999999876664
Q ss_pred HHHHHhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhhhhHHHHHH
Q psy5460 833 RIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAA 912 (994)
Q Consensus 833 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~~~~~~~~~~~~~~~ 912 (994)
+|+.++++.+++++||+||||||++|++|||+||+|||||.++
T Consensus 911 ----------------------~~~~~~~~~~~~~~li~~aknLm~~V~~~v~~~~~as~k~~~~--------------- 953 (968)
T PF01044_consen 911 ----------------------SGELSVSDLESAESLIQNAKNLMNAVVETVKAAEAASIKYRRD--------------- 953 (968)
T ss_dssp ----------------------TT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBSTT---------------
T ss_pred ----------------------CCCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---------------
Confidence 6677888899999999999999999999999999999999885
Q ss_pred HhhhHHHHHHhhccccccccCCCCCCCCcceeEeeccCCCCC
Q psy5460 913 KNLMNAVVLTVKSSYVASTKYPRQNQVASPIVVWKMKAPEKK 954 (994)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (994)
++|+|.|+||+|+||
T Consensus 954 ---------------------------~~~~~~w~~~~p~~~ 968 (968)
T PF01044_consen 954 ---------------------------AGPVVQWKMKAPEKK 968 (968)
T ss_dssp ---------------------------CCGS----B-SS---
T ss_pred ---------------------------CCCeEEeeeCCCCCC
Confidence 589999999999997
No 3
>KOG3681|consensus
Probab=100.00 E-value=3.8e-93 Score=827.18 Aligned_cols=422 Identities=63% Similarity=0.915 Sum_probs=394.2
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhC
Q psy5460 1 METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAAR 80 (994)
Q Consensus 1 ldt~~PL~~L~eAa~~G~ee~~~~~a~~F~eha~klvevA~lv~a~s~d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~ 80 (994)
+||++||+.|++|+++||+++|.+|+.+|++|+++|++|||++|++|+|+++++.+++++.||++||||||+||++|+.+
T Consensus 378 ldt~tpllll~eaa~~G~ee~~~eya~~f~eha~~lvevarl~~~is~n~~~v~~v~~sa~ql~~L~Pqvi~Aa~~l~~~ 457 (835)
T KOG3681|consen 378 LDTTTPLLLLIEAAKAGNEEEVKEYAANFREHANKLVEVARLACSISNNEEGVKIVQHSAAQLESLCPQVINAARILAAR 457 (835)
T ss_pred HhhhhHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHhcchHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHhHHHHHHHHHHHHHHHhcCChhHHHhHHHHHHHHHhHHHH
Q psy5460 81 PRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVAN 160 (994)
Q Consensus 81 P~sk~A~Enle~l~~~W~~~v~~L~~avDditd~~dFL~vSe~~I~~d~~~c~~Ai~~~d~~~~~~~a~~I~gra~RV~~ 160 (994)
|.||.|+|||+.|+++|+++|+.|+.+||++|+++|||++||.||.+|+++|..||++.||+.++.++|+|+||++|||+
T Consensus 458 P~sk~A~enme~~k~~w~~~V~~lt~avd~~t~~~dfl~vSE~hi~ed~~kc~~ai~~~~~~~l~~~a~~i~~ra~rv~~ 537 (835)
T KOG3681|consen 458 PGSKAAQENMETYKNQWEDQVRVLTTAVDDITDIDDFLAVSEEHILEDVNKCGVAIQSIDPQMLDRTAGAIRGRANRVLH 537 (835)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcCCCCchhhhHHHHhHHHHHHHHHHHHHHHhccCC
Q psy5460 161 VVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRT 240 (994)
Q Consensus 161 Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~np~~~~~~~~f~da~~~l~~~V~~vr~av~~~~~ 240 (994)
|+++||||+|||+|+++|+++++.|.++++|+|.+++..+.+.+..+.......++|+++++.++++++ |.
T Consensus 538 v~~aE~dn~e~~~yte~v~~a~~~l~~~v~~~~~d~~~~a~e~~d~~~~~~~~~n~~i~a~~~V~d~i~---------~~ 608 (835)
T KOG3681|consen 538 VVKAEMDNYEPPVYTERVKEAVDVLSETVMPQFGDAVSVAVEILDPDKAFRGEENRFLDASRLVYDAIR---------RT 608 (835)
T ss_pred HHHHHHhccCCchhhHHHHHHHHHHHhccchhHHHHHHHHHHhcCchhcccchhhHHhhhhHHHHhccc---------CC
Confidence 999999999999999999999999999999999999999998888887788889999999999999887 56
Q ss_pred CCCCCCCCccccccccccccccCCCCccCCCCCCCCccCCCchhHHhhcCChHHHHHHHHHHHHHHhhhhhhHHHhhhhc
Q psy5460 241 DEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWD 320 (994)
Q Consensus 241 p~el~~~~s~~~~~~~~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~~lp~~e~~ki~~~~~~~~~~a~~l~~E~~kW~ 320 (994)
|+++ ++++++.. +.+. |.+| +.+.++.|++ |++ ||++++..|..++++||+|++|||
T Consensus 609 ~~~~--~~~~~E~l---~~~~--~~~t------------~~~~~~~m~~-~~e---kia~~~~~~~~~~s~ld~Ev~KWd 665 (835)
T KOG3681|consen 609 PEDL--PDPDLEAL---ELAR--SKPT------------PETDREKMRK-PQE---KIAKQGLPFKLLTSKLDAEVEKWD 665 (835)
T ss_pred CCCC--ChHhHhhh---hccc--cCCC------------chhhhhhccC-CHh---hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777 35666432 2232 2122 0345777777 665 999999999999999999999999
Q ss_pred c-CCchHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHhhhCCCchhHHHHHHHHHHHHH
Q psy5460 321 D-TGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIAL 399 (994)
Q Consensus 321 ~-~~N~IV~~Ak~Ma~~m~~M~~ftrg~G~l~tk~dli~~Ak~iae~~~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~~ 399 (994)
| ++||||++||+||++||+||+||||+||||||.|||++||+||++|+++++++|+||+||||+++|++||+||++||+
T Consensus 666 d~~~NDII~~AK~M~~im~~Mt~FTRG~GPlKtt~DlI~aAk~iAeag~~m~rlareia~qcpDs~~k~dLLa~lerIpl 745 (835)
T KOG3681|consen 666 DKSGNDIIALAKNMCSIMYEMTDFTRGDGPLKTTSDLISAAKKIAEAGSRMTRLAREIAKQCPDSAIKTDLLAYLERIPL 745 (835)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHhCCChHHHHHHHHHHHHhHH
Confidence 9 699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccccccccccchhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhh
Q psy5460 400 YCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQV 463 (994)
Q Consensus 400 ~~~QL~i~s~vKa~~~~~g~e~~~s~~~~~~~lI~~AknLm~~V~~tv~~~~~as~K~~~~~~l 463 (994)
|||||+||+|||+++++.|++ .+|||.|+|||+.|++||+++|.||+||.+.++.
T Consensus 746 ~c~QLqI~Skvka~~~~~~~~---------~slIq~tknlmn~vvqtvk~syv~stk~~~~~~~ 800 (835)
T KOG3681|consen 746 YCHQLQICSKVKATVKNLGGE---------LSLIQATKNLMNEVVQTVKASYVAATKLQQSVKG 800 (835)
T ss_pred HHHHHHHHHHHHHHHhhccch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988763 2799999999999999999999999999875443
No 4
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=100.00 E-value=4.9e-87 Score=833.21 Aligned_cols=453 Identities=52% Similarity=0.746 Sum_probs=372.2
Q ss_pred CccchHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhHHHHHHHHH
Q psy5460 1 METDIPILVLIEAARS-----GNEKEVEKAAENFADHANKLVEVANLACSMS-NNEDGVKMVRYAASSIASLYTQVINAA 74 (994)
Q Consensus 1 ldt~~PL~~L~eAa~~-----G~ee~~~~~a~~F~eha~klvevA~lv~a~s-~d~~~vk~i~~aa~qLe~L~PQVi~Aa 74 (994)
+||++||+.|++|++. ||++.|++|++.|++|+++|++||++||++| +|+++++.|+.++.+|+.|+||||+||
T Consensus 491 ~d~~~pL~~L~~Aa~~~~~~~g~e~~~~~~a~~F~~ha~~l~~vA~lva~~s~~d~~~v~~I~~aa~~l~~L~pqvi~Aa 570 (968)
T PF01044_consen 491 TDTTTPLKELVEAAKAPSGTPGREENFEEKAQNFQEHADQLVEVARLVAAMSCTDEETVKEIRHAAEQLEKLTPQVINAA 570 (968)
T ss_dssp TSSSHHHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998 9999999999999999999999999999988 899999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHhHHHHHHHHHHHHHHHhcCChhHHHhHHHHHHHH
Q psy5460 75 RILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGR 154 (994)
Q Consensus 75 r~L~~~P~sk~A~Enle~l~~~W~~~v~~L~~avDditd~~dFL~vSe~~I~~d~~~c~~Ai~~~d~~~~~~~a~~I~gr 154 (994)
++|+.||+|++|+|||++||++|++.++.|+++||+|+|++|||++||++|.+|+++|++||+++||+.|++++++|+||
T Consensus 571 ~~l~~~P~sk~A~e~le~~~~~W~~~v~~L~~~vd~i~d~~eFl~vSe~~i~~d~~~c~~Al~~~d~~~~~~~a~~I~~r 650 (968)
T PF01044_consen 571 RILAANPSSKAAKEHLEVFREAWEDAVEDLTEAVDEITDVDEFLAVSEEHILKDVDKCEKALRSGDPQELDRAASSIAGR 650 (968)
T ss_dssp HHCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcCCCCchhhhHH-------HHhHHHHHHH
Q psy5460 155 SARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEF-------IDASRLVYDG 227 (994)
Q Consensus 155 a~RV~~Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~np~~~~~~~~f-------~da~~~l~~~ 227 (994)
++|||+|+++|+||++||.|+++|++++++|+++++|+|..+.+.+. ||.++.+.+.| +++.+.|+++
T Consensus 651 a~rV~~va~~e~dn~eDp~y~~~v~~a~~~L~~~i~~~v~~ak~va~-----n~~d~~a~~~~~~~~~~li~av~~V~~a 725 (968)
T PF01044_consen 651 ANRVIQVAKREMDNSEDPIYRNRVLEAIDQLEQAIPPMVAAAKEVAT-----NPLDKNAQQQFRESNKELIDAVRQVRDA 725 (968)
T ss_dssp HHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-----HHTTTTTHHHHCHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766664 45554455555 4555666666
Q ss_pred HHHHHHHHhccCCCCCCCCCCccccccccccccccCCCCccCCCCCC-CCccCCCchhHHhhcCChHHHHHHHHHHHHHH
Q psy5460 228 VREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEY-PDISGITTAREAMRKMTEEDKQKIAQQVEFFR 306 (994)
Q Consensus 228 V~~vr~av~~~~~p~el~~~~s~~~~~~~~~~a~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~lp~~e~~ki~~~~~~~~ 306 (994)
|+.+++++++++.|+.++ .+++++. +. ..+++++++| ..+++. .......+.+.++..+|++++.+|.+++..|.
T Consensus 726 v~~~~~~~L~~~~~~~~~-~~~~~e~-ed-~~a~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~ 801 (968)
T PF01044_consen 726 VRDIRHPVLMNRSPEDLP-SDSELEQ-ED-EQAPPRSPSP-EDTEPPPRPPPPEETDREKMSRLPEEEKAKIAKQVQPIK 801 (968)
T ss_dssp HCHHHHHHC---S---------------------------------------TTS---S-----S-SSSTTCCCH-HHHH
T ss_pred ccCCCcchhcccCccccc-CCCCCcc-cc-CCCCCCCCCc-hhhccCCCCCCCcccchHHHHhCCHHHHhChhhhhHHHH
Confidence 666666666777777653 2333331 11 1134555544 222110 00111223455678899999999999999999
Q ss_pred hhhhhhHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHhhhCCCchh
Q psy5460 307 SEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESST 386 (994)
Q Consensus 307 ~~a~~l~~E~~kW~~~~N~IV~~Ak~Ma~~m~~M~~ftrg~G~l~tk~dli~~Ak~iae~~~~l~~lar~iA~~c~D~~~ 386 (994)
.++++||+|++||++++||||.+||+||.+|++||+|+||+| |||+|||++||+||++|+++++++|.||++|||+++
T Consensus 802 ~~~~~l~~e~~kW~~~~Ndiv~~ak~Ma~~m~~m~~f~rg~g--~~~~dli~~Ak~ia~~~~~~~~~ar~ia~~c~d~~~ 879 (968)
T PF01044_consen 802 EAASELDQEVEKWDDQGNDIVALAKSMASMMMEMSQFTRGEG--KTKKDLITAAKKIAEEGNKLTKLAREIADQCPDKRL 879 (968)
T ss_dssp HHHHHHHHHHTTB-STT-HHHHHHHHHHHHHHHHHHHTTS-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSBHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccccchhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhh
Q psy5460 387 KKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVA 464 (994)
Q Consensus 387 k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~~g~e~~~s~~~~~~~lI~~AknLm~~V~~tv~~~~~as~K~~~~~~l~ 464 (994)
|.+||.||++||+|||||+|||+||+++++.++++..+++++.++||++|||||++|++||++||+||+||++..++.
T Consensus 880 k~~Ll~~~~~i~~~~~QL~i~s~VKa~~~~~~~~~~~~~~~~~~~li~~aknLm~~V~~~v~~~~~as~k~~~~~~~~ 957 (968)
T PF01044_consen 880 KEDLLAYLERIPTICQQLKIISTVKADVQGSSGELSVSDLESAESLIQNAKNLMNAVVETVKAAEAASIKYRRDAGPV 957 (968)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHTTTTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBSTTCCGS
T ss_pred HHHHHHHHCcchhHHHHHHhHeeecHHhcCCCCCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCe
Confidence 999999999999999999999999999999988888888899999999999999999999999999999999875554
No 5
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=98.03 E-value=0.0012 Score=77.85 Aligned_cols=210 Identities=15% Similarity=0.250 Sum_probs=151.7
Q ss_pred chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCC
Q psy5460 4 DIPILVLIEAARSGN-EKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPR 82 (994)
Q Consensus 4 ~~PL~~L~eAa~~G~-ee~~~~~a~~F~eha~klvevA~lv~a~s~d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~ 82 (994)
..|++.|......++ .+.+++....|.-+-+|+.+.+-|+-+.++|.++.-.||.--+-+|+|.+-+|+|-. | |.
T Consensus 265 ~~~v~klr~~l~~~~s~~~ld~lI~DFD~n~DRi~QIGlFAIa~s~d~K~kt~IRSCLASlEsLDt~LIPalq-l---~~ 340 (552)
T PF05482_consen 265 KFSVDKLRNSLRNKRSSNDLDELIADFDVNMDRIMQIGLFAIAFSPDLKRKTIIRSCLASLESLDTCLIPALQ-L---PD 340 (552)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHhhHHHHHHHhHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHHH-h---hc
Confidence 568888888877655 778999999999999999999999999999999999999999999999999999888 3 88
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHhHHHHHHHHHHHHHHHhcCCh-hHHHhHHHHHHHHHhHHHHH
Q psy5460 83 SKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDA-DILDRTAGAIRGRSARVANV 161 (994)
Q Consensus 83 sk~A~Enle~l~~~W~~~v~~L~~avDditd~~dFL~vSe~~I~~d~~~c~~Ai~~~d~-~~~~~~a~~I~gra~RV~~V 161 (994)
++.+.-|-+.|-+.|-+++..++.++.+|+|+.-|+..--+ .+..++.++.+.-+ ..+. .|... ..|
T Consensus 341 s~~~~~hs~iLe~Hf~eE~~~fr~~I~eIIDS~Af~~~~ld----~L~~~I~~~ek~~~k~~l~----~lvQm----~~v 408 (552)
T PF05482_consen 341 SKSSDHHSEILEQHFNEEMNKFRNAIHEIIDSRAFCQCYLD----MLQEGIDAAEKRFPKTQLE----DLVQM----GSV 408 (552)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH----HHHHHHHHHHhccchhHHH----HHHHH----HHH
Confidence 99999999999999999999999999999999999985443 34445555544433 1111 12121 123
Q ss_pred HHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcCCCCchhhhHHHHhHHHHHHHHHHHHHHHhcc
Q psy5460 162 VAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMN 238 (994)
Q Consensus 162 ak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~np~~~~~~~~f~da~~~l~~~V~~vr~av~~~ 238 (994)
...+..-+ .-..++.+-.+.+.+....++.+. ++++ ....+.+..+.+.-.+.|+.-++.++.++.++
T Consensus 409 l~ehf~l~---vn~~~L~~~~~~~~qdf~~il~EC-kAil-----~~a~~vdpkRIiKRfkIL~~vL~KL~~~l~~~ 476 (552)
T PF05482_consen 409 LLEHFQLP---VNYKELHEEGKRLHQDFIMILREC-KAIL-----MCATQVDPKRIIKRFKILYSVLRKLQDALSKS 476 (552)
T ss_pred HHHHHhcc---hhHHhhhhhhHHHHHHHHHHHHHH-HHHH-----hccCcCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333321 111222222333333444444443 2222 12344567799999999999999999999755
No 6
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=97.99 E-value=0.0021 Score=76.03 Aligned_cols=211 Identities=15% Similarity=0.242 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccccccccccchhccCCchHHHHH
Q psy5460 355 DVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQ 434 (994)
Q Consensus 355 dli~~Ak~iae~~~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~~g~e~~~s~~~~~~~lI~ 434 (994)
+.+...+.+......+..-+=.||+-|... -|+.|-..|+++-.-|.-|+=-+ | ..+. ..
T Consensus 170 e~~~e~~~l~~~ie~il~hAlafaNVal~~-DkkAlsa~CQkVl~Ec~af~~~~---------~------~~n~---~~- 229 (552)
T PF05482_consen 170 EQLSESKQLRSIIEHILSHALAFANVALEE-DKKALSALCQKVLRECNAFQEEC---------G------DSNP---SN- 229 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhh-hHHHHHHHHHHHHHHHHHHHHHh---------c------CCCh---Hh-
Confidence 334556777777778888888899999966 59999999999999998775111 0 0011 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhHHHHhhhhhccccccc-chhHHHHHHHHhcCC-HHHHHHHHHHHHH
Q psy5460 435 AAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMET-DIPILVLIEAARSGN-EKEVEKAAENFAD 512 (994)
Q Consensus 435 ~AknLm~~V~~tv~~~~~as~K~~~~~~l~~~~~~avv~~v~~~dsF~dt-~~PL~~L~~Aa~~Gd-~e~~~~~a~~F~e 512 (994)
++|- |+.--+.++.+.+....|+..-|. .+|.|+ ..|++.|......++ .+.+++....|.-
T Consensus 230 --~kL~------------AlsLe~ALY~LE~~vNeALLrLVf--~~f~d~~~~~v~klr~~l~~~~s~~~ld~lI~DFD~ 293 (552)
T PF05482_consen 230 --RKLE------------ALSLEDALYQLETFVNEALLRLVF--ECFSDFEKFSVDKLRNSLRNKRSSNDLDELIADFDV 293 (552)
T ss_pred --hhhH------------HHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 1111 011113456677788889888887 558885 889999998888765 7888999999999
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHhhhhHHHHHhhhhhhHHHhhhhHHH
Q psy5460 513 HANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVF 592 (994)
Q Consensus 513 ha~~l~evA~lv~~~s~ne~~~~~i~~aa~~le~L~PQVI~Aar~l~~~P~sk~A~en~e~~~~~w~~~~~~~~e~~~~~ 592 (994)
+.||+.+++-++-+.|+|.+..-.||.--..+|.|-+-+|.|-.+ |.|+.+.-|.+ .+
T Consensus 294 n~DRi~QIGlFAIa~s~d~K~kt~IRSCLASlEsLDt~LIPalql----~~s~~~~~hs~------------------iL 351 (552)
T PF05482_consen 294 NMDRIMQIGLFAIAFSPDLKRKTIIRSCLASLESLDTCLIPALQL----PDSKSSDHHSE------------------IL 351 (552)
T ss_pred hHHHHHHHhHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHHHHHh----hccccchhhHH------------------HH
Confidence 999999999999999999999999999999999999999999883 77776677766 36
Q ss_pred HHHHHHHHHHHHHhhhhhcChHHHHHhhHHH
Q psy5460 593 KEAWDSQVRVLTEAVDDITTIDDFLAVSENH 623 (994)
Q Consensus 593 k~~W~~~v~~L~~~vDdit~~~dFl~vse~~ 623 (994)
.+.|.+.+..++.++.+|+|+.-|+...-+-
T Consensus 352 e~Hf~eE~~~fr~~I~eIIDS~Af~~~~ld~ 382 (552)
T PF05482_consen 352 EQHFNEEMNKFRNAIHEIIDSRAFCQCYLDM 382 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 6789999999999999999999999855433
No 7
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=94.86 E-value=0.31 Score=49.72 Aligned_cols=121 Identities=28% Similarity=0.248 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHHHHHHH
Q psy5460 758 TMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALY 837 (994)
Q Consensus 758 t~dli~~Ak~iae~~~~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~~~~~~ 837 (994)
+++||.+||.++...+.|..-|..+.. ... --+.|+.....|..-+-||=+-|+|||+...+
T Consensus 9 teGLISAAKaVa~at~~LveaA~~vv~-g~~--~~E~LIvaa~eVAasTAQLv~AsrVKa~~~S~--------------- 70 (152)
T PF01608_consen 9 TEGLISAAKAVAAATNMLVEAADGVVQ-GTG--SEEELIVAAKEVAASTAQLVAASRVKADPNSK--------------- 70 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TS----HHHHHHHHHHHHHHHHHHHHHHCTTS-TTSC---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC--cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH---------------
Confidence 689999999999999999998888776 233 23677778888888887777777777653322
Q ss_pred hhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhhhhHHHHHHHhhhH
Q psy5460 838 CHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMN 917 (994)
Q Consensus 838 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~~~~~~~~~~~~~~~~~~~~ 917 (994)
.-..|-.+++....+....|+++..+..........+ -+.+++.|.-+-.|.
T Consensus 71 ---------------------------~~~~L~~As~~V~~At~~LV~av~~~~~~~~~~~~~d-~s~ls~~~~k~~eMe 122 (152)
T PF01608_consen 71 ---------------------------TQDRLEQASKAVKKATENLVAAVKAAIEQEEEQEEVD-FSKLSLHQAKRQEME 122 (152)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-----------HHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-hhhhcHHHHHHHHHH
Confidence 2246777888888888888888877766544422222 245788999888998
Q ss_pred HHHHHhh
Q psy5460 918 AVVLTVK 924 (994)
Q Consensus 918 ~~~~~~~ 924 (994)
+-|.-+|
T Consensus 123 ~Qv~iL~ 129 (152)
T PF01608_consen 123 AQVRILK 129 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776554
No 8
>KOG4261|consensus
Probab=93.81 E-value=1.5 Score=54.20 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=156.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCC----CCHHHHHHHHHHHHHhhhhHHHHHHHHhhhCCCchhHHHHHHHHHHHH
Q psy5460 323 GNDIIVLAKHMCMIMMEMTDFTRGRGPL----KTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIA 398 (994)
Q Consensus 323 ~N~IV~~Ak~Ma~~m~~M~~ftrg~G~l----~tk~dli~~Ak~iae~~~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~ 398 (994)
.++.+.+|-..+.-..+.-. +|+|+- +-..-+...||..|..+..+.--++.|+..|.|...+..+.+.+-++.
T Consensus 621 ~~~~~~~a~~vg~~s~~~l~--i~e~~~~g~~~f~d~l~asakavA~~~aalvl~aK~iaavcDd~~~q~rVIaaatqcA 698 (1003)
T KOG4261|consen 621 RQEVLRAAGHVGEASGHLLN--IGEAMASGSAGFPDGLMASAKAVANATAALVLKAKNIAAVCDDCQLQNRVIAAATQCA 698 (1003)
T ss_pred chhHhHhhcccccchhhhhh--hhcccCCcccCcchhhhhchhhhhhhhHHHhhhhhhHHHhcccHHHHHHHHHHHHHHH
Confidence 44555555444444433333 444431 123457788999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcccccccccccchhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhhHHHHhhhhh-
Q psy5460 399 LYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILL- 477 (994)
Q Consensus 399 ~~~~QL~i~s~vKa~~~~~g~e~~~s~~~~~~~lI~~AknLm~~V~~tv~~~~~as~K~~~~~~l~~~~~~avv~~v~~- 477 (994)
.-..||-+|++|-++.- ....+ -.+++..+++.-.+|...+..|..|+..+....++.-... .|+....+
T Consensus 699 laTsqLVacakvvspTi--~~~~c------QeQl~~aar~v~~SV~~~~~~sq~a~~d~~ll~dvlaaa~-dVs~aLtel 769 (1003)
T KOG4261|consen 699 LATSQLVACAKVVSPTI--SNPAC------QEQLTEAARLVGRSVNNLVVASQAATGDFGLLGDVLAAAR-DVSQALTEL 769 (1003)
T ss_pred hhhccceeeeccccccc--CcHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHH-HHHHHHHHH
Confidence 99999999988755432 11111 1378899999999999999999999887766555542211 11111100
Q ss_pred ---cccccccchhHHHHHHHHh------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q psy5460 478 ---VFSFMETDIPILVLIEAAR------------SGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAAS 542 (994)
Q Consensus 478 ---~dsF~dt~~PL~~L~~Aa~------------~Gd~e~~~~~a~~F~eha~~l~evA~lv~~~s~ne~~~~~i~~aa~ 542 (994)
+.-|....+|..+-.++.. -||-..+-..+..+..|...|+++-+-..+--.+-+....+..+++
T Consensus 770 leHak~~a~~~tp~~~~eq~~~~~~~rttri~~s~gd~~emvR~Ar~l~qttqlLve~~qgeA~~~~dle~~~~Llsaak 849 (1003)
T KOG4261|consen 770 LEHAKYSAAVATPRGRYEQATDEILYRTTRIFVSMGDAGEMVRQARLLAQTTQLLVEASQGEAEQEKDLENSCKLLSAAK 849 (1003)
T ss_pred HHHHHHhhccCCCCCCcccCCceeEEEEeeeeeecCCHHHHHHHhHHhhhcHHHHHHHHhhhhhcccchhhHHHHHhHHh
Confidence 0112222222222222211 2677777777777778888888877765555555566778889999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC
Q psy5460 543 SIASLYTQVINAARILAARPRS 564 (994)
Q Consensus 543 ~le~L~PQVI~Aar~l~~~P~s 564 (994)
.+..-+.+.+.|++-.+.+|++
T Consensus 850 ~ladstaqmvlaak~ass~p~~ 871 (1003)
T KOG4261|consen 850 RLADSTAQMVLAAKGASSNPSA 871 (1003)
T ss_pred hhhhhHHHHHHHHhhhcCCchh
Confidence 9999999999999999999975
No 9
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=93.08 E-value=1.4 Score=43.77 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy5460 16 SGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKE 95 (994)
Q Consensus 16 ~G~ee~~~~~a~~F~eha~klvevA~lv~a~s~d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~sk~A~Enle~l~~ 95 (994)
.++.+++...+..|..+-..|++-++.++...++++....|+.+...|-.=|-.+|.++-.+-.+|++.-++.-|-.-.+
T Consensus 28 ~~~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~LG~sc~~Lv~aag~~~~~P~d~~~k~~L~~~AR 107 (125)
T PF08913_consen 28 RTNPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQDLGMSCIELVQAAGAVQSNPSDPYAKRELADAAR 107 (125)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCchhHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHH
Q psy5460 96 AWDSQVRVLTEAV 108 (994)
Q Consensus 96 ~W~~~v~~L~~av 108 (994)
.=.+.|..+..++
T Consensus 108 ~v~EkVs~VlaaL 120 (125)
T PF08913_consen 108 AVSEKVSQVLAAL 120 (125)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666553
No 10
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=91.80 E-value=2.1 Score=43.81 Aligned_cols=90 Identities=27% Similarity=0.257 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccccccccccchhccCCchHHH
Q psy5460 353 TMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSL 432 (994)
Q Consensus 353 k~dli~~Ak~iae~~~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~~g~e~~~s~~~~~~~l 432 (994)
++.||++||.++.+.+-|+.-|..+... ..+ -..|.-....|..-+.||-+.|+||++... ..-..|
T Consensus 9 teGLISAAKaVa~at~~LveaA~~vv~g-~~~--~E~LIvaa~eVAasTAQLv~AsrVKa~~~S----------~~~~~L 75 (152)
T PF01608_consen 9 TEGLISAAKAVAAATNMLVEAADGVVQG-TGS--EEELIVAAKEVAASTAQLVAASRVKADPNS----------KTQDRL 75 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-S----HHHHHHHHHHHHHHHHHHHHHHCTTS-TTS----------CCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCc--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHH
Confidence 5779999999999999999999987763 333 345888889999999999999999997742 233467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy5460 433 IQAAKNLMNAVVLTVKSSYVAST 455 (994)
Q Consensus 433 I~~AknLm~~V~~tv~~~~~as~ 455 (994)
-.+.+....+...+|+++..+..
T Consensus 76 ~~As~~V~~At~~LV~av~~~~~ 98 (152)
T PF01608_consen 76 EQASKAVKKATENLVAAVKAAIE 98 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888778877654433
No 11
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=87.84 E-value=5.3 Score=39.66 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=80.2
Q ss_pred hcCChhHHHhHHHHHHHHHhHHHHHHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcCCCCchhhhH
Q psy5460 137 QEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENE 216 (994)
Q Consensus 137 ~~~d~~~~~~~a~~I~gra~RV~~Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~np~~~~~~~~ 216 (994)
...+|+.+-..+..+-..-..+++-.+.-+-..+++....+|+.+++.|-.+.+-.++.+ ..+..+|.|+...+.
T Consensus 27 s~~~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~LG~sc~~Lv~aa-----g~~~~~P~d~~~k~~ 101 (125)
T PF08913_consen 27 SRTNPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQDLGMSCIELVQAA-----GAVQSNPSDPYAKRE 101 (125)
T ss_dssp CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-TT-HHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh-----CcCCCCCCchhHHHH
Confidence 356899999999999999999999999999999999999999999999999887776632 356789999999999
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q psy5460 217 FIDASRLVYDGVREIRRAV 235 (994)
Q Consensus 217 f~da~~~l~~~V~~vr~av 235 (994)
+.+.++.+.+.|..|=-++
T Consensus 102 L~~~AR~v~EkVs~VlaaL 120 (125)
T PF08913_consen 102 LADAARAVSEKVSQVLAAL 120 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986555
No 12
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=85.23 E-value=13 Score=39.92 Aligned_cols=122 Identities=24% Similarity=0.171 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHHHHHHH
Q psy5460 758 TMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIALY 837 (994)
Q Consensus 758 t~dli~~Ak~iae~~~~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~~~~~~ 837 (994)
+++||.+||.++.....|..-+..+-....+ -..|......|.--+.||=.-++||++
T Consensus 56 ~EgLisAAkaV~~a~~~Lv~aA~~~~~g~~~---~E~LI~aAk~VAasTaQLVaAsrvka~------------------- 113 (200)
T smart00307 56 TEGLISAAKAVAAATNVLVEAADGVVTGKGS---EEELIVAAKEVAASTAQLVAASRVKAD------------------- 113 (200)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHHhhccC-------------------
Confidence 6888888888888888888777766543322 356666666666666666655555543
Q ss_pred hhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhhhhHHHHHHHhhhH
Q psy5460 838 CHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMN 917 (994)
Q Consensus 838 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~~~~~~~~~~~~~~~~~~~~ 917 (994)
.. +..-..|..++|.+-.+....|.++..+..+-..+...---|.+++.+.-+-.|.
T Consensus 114 -------------~~----------S~~~~~L~~Ask~V~~At~~LVaaak~~~~~~~e~~~~~d~s~l~~~~~k~~emE 170 (200)
T smart00307 114 -------------KD----------SQAQDRLQAASKAVTNATANLVAAVKSGMIFDEEQEEEEDFSKLSLHEGKTQEME 170 (200)
T ss_pred -------------CC----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhccchHHHHHHHHH
Confidence 11 2233588999999999999999998887765312111111356788888888888
Q ss_pred HHHHHhh
Q psy5460 918 AVVLTVK 924 (994)
Q Consensus 918 ~~~~~~~ 924 (994)
+-|.-.|
T Consensus 171 ~Qv~IL~ 177 (200)
T smart00307 171 QQVEILK 177 (200)
T ss_pred HHHHHHH
Confidence 8775543
No 13
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=83.73 E-value=25 Score=37.76 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc----------hhhhhhhhhHHHHhhhhhcccccccchhHHHHHHHHhc--
Q psy5460 430 TSLIQAAKNLMNAVVLTVKSSYVASTKYPR----------QNQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARS-- 497 (994)
Q Consensus 430 ~~lI~~AknLm~~V~~tv~~~~~as~K~~~----------~~~l~~~~~~avv~~v~~~dsF~dt~~PL~~L~~Aa~~-- 497 (994)
+..+..++.||+++..+|+++-.|-..+-. ++.-...+..+++...- ....-...|++++..
T Consensus 8 e~IL~aa~~i~~a~~~Lv~aA~~~Q~Eiv~~gr~~~~~~~fY~kn~~w~EgLisAAk------aV~~a~~~Lv~aA~~~~ 81 (200)
T smart00307 8 ESILEAAKAITKAIAALVKAATNAQREIVAQGRGGASPGEFYKKNSRWTEGLISAAK------AVAAATNVLVEAADGVV 81 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCcccHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 468889999999999999988766433311 11111133344443321 112223456666552
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5460 498 ---GNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAA 560 (994)
Q Consensus 498 ---Gd~e~~~~~a~~F~eha~~l~evA~lv~~~s~ne~~~~~i~~aa~~le~L~PQVI~Aar~l~~ 560 (994)
|+.+.+-..+..+-.++.+|+.-++ +-. ..|.+..+.+..+...+..-+-++|.+++....
T Consensus 82 ~g~~~~E~LI~aAk~VAasTaQLVaAsr-vka-~~~S~~~~~L~~Ask~V~~At~~LVaaak~~~~ 145 (200)
T smart00307 82 TGKGSEEELIVAAKEVAASTAQLVAASR-VKA-DKDSQAQDRLQAASKAVTNATANLVAAVKSGMI 145 (200)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHh-hcc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777888888888875555 221 234445666777777888888888877776654
No 14
>KOG4261|consensus
Probab=80.31 E-value=88 Score=39.58 Aligned_cols=200 Identities=18% Similarity=0.143 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q psy5460 22 VEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQV 101 (994)
Q Consensus 22 ~~~~a~~F~eha~klvevA~lv~a~s~d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~sk~A~Enle~l~~~W~~~v 101 (994)
.-..+..--.-+..++-=|..+++.|.|..+...|..++.+.-.=+-|++--|+...--=+|..-++.+...-+.-...|
T Consensus 656 l~asakavA~~~aalvl~aK~iaavcDd~~~q~rVIaaatqcAlaTsqLVacakvvspTi~~~~cQeQl~~aar~v~~SV 735 (1003)
T KOG4261|consen 656 LMASAKAVANATAALVLKAKNIAAVCDDCQLQNRVIAAATQCALATSQLVACAKVVSPTISNPACQEQLTEAARLVGRSV 735 (1003)
T ss_pred hhhchhhhhhhhHHHhhhhhhHHHhcccHHHHHHHHHHHHHHHhhhccceeeecccccccCcHHHHHHHHHHHHHHHHHH
Confidence 33345555666777777888888899999999888888888776666666555444433334455555555555555555
Q ss_pred HHHHHHHhhhcChH----H------HHHHhHHHHHHHHHHHHHHHh-----------------------cCChhHHHhHH
Q psy5460 102 RVLTEAVDDITTID----D------FLAVSENHILEDVNKCVLALQ-----------------------EGDADILDRTA 148 (994)
Q Consensus 102 ~~L~~avDditd~~----d------FL~vSe~~I~~d~~~c~~Ai~-----------------------~~d~~~~~~~a 148 (994)
+.+...+...+.=. | -+..|-..+..|+. |.-+-. -+++..++++|
T Consensus 736 ~~~~~~sq~a~~d~~ll~dvlaaa~dVs~aLtelleHak-~~a~~~tp~~~~eq~~~~~~~rttri~~s~gd~~emvR~A 814 (1003)
T KOG4261|consen 736 NNLVVASQAATGDFGLLGDVLAAARDVSQALTELLEHAK-YSAAVATPRGRYEQATDEILYRTTRIFVSMGDAGEMVRQA 814 (1003)
T ss_pred HHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCcccCCceeEEEEeeeeeecCCHHHHHHHh
Confidence 54444444333211 1 12334445555543 222211 23788899999
Q ss_pred HHHHHHHhHHHHHHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcCCCCchhhhHHHHhHHHHHHH
Q psy5460 149 GAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDG 227 (994)
Q Consensus 149 ~~I~gra~RV~~Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~np~~~~~~~~f~da~~~l~~~ 227 (994)
--+.....-.+++.+.+.++-.|-....+++.+.++|..+-..|+. +++..++||.+....++++.++..+...
T Consensus 815 r~l~qttqlLve~~qgeA~~~~dle~~~~Llsaak~ladstaqmvl-----aak~ass~p~~~~~q~rlrkaAe~lr~~ 888 (1003)
T KOG4261|consen 815 RLLAQTTQLLVEASQGEAEQEKDLENSCKLLSAAKRLADSTAQMVL-----AAKGASSNPSAEDQQQRLRKAAEGLRAA 888 (1003)
T ss_pred HHhhhcHHHHHHHHhhhhhcccchhhHHHHHhHHhhhhhhHHHHHH-----HHhhhcCCchhHHHHHHHHHhhHHHHHH
Confidence 8888888999999999999999999999999999999988766654 3356789998877777777766655433
No 15
>KOG0980|consensus
Probab=75.21 E-value=2.4e+02 Score=36.47 Aligned_cols=104 Identities=25% Similarity=0.218 Sum_probs=70.1
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccccccccc
Q psy5460 340 MTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISG 419 (994)
Q Consensus 340 M~~ftrg~G~l~tk~dli~~Ak~iae~~~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~vKa~~~~~g~ 419 (994)
-..|.+.... =|+.||.+||.++-+++-|..-|-.+-.. +++ =.+|.=.+..|.--..||-+-|+|||+....
T Consensus 824 ~~eFY~kNsr--WTEGLISAaKAVa~aatvLVeaAdkvV~~-~gk--fEeLIVas~EIAAsTaQLVaASrVKA~k~S~-- 896 (980)
T KOG0980|consen 824 PNEFYKKNSR--WTEGLISAAKAVAWAATVLVEAADKVVTG-TGK--FEELIVASQEIAASTAQLVAASRVKADKDSK-- 896 (980)
T ss_pred HHHHHHhcCc--hhHHHHHHHHHHHHHHHHHHHHhhhHhcC-CCC--cHHHHHhhhHHHHHHHHHHHHHHhhccccch--
Confidence 3456665543 48999999999999999999877766655 333 3457777899999999999999999976432
Q ss_pred cchhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy5460 420 ELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYP 458 (994)
Q Consensus 420 e~~~s~~~~~~~lI~~AknLm~~V~~tv~~~~~as~K~~ 458 (994)
..+.|-.++|...++-..+|...+.+-.+++
T Consensus 897 --------~ld~L~~ask~Vtqat~~lVa~vks~~sq~e 927 (980)
T KOG0980|consen 897 --------KLDALEVASKAVTQATAQLVASVKSGQSQLE 927 (980)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 2334555555555544444444443333333
No 16
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=46.66 E-value=4.2e+02 Score=28.86 Aligned_cols=97 Identities=8% Similarity=0.066 Sum_probs=66.9
Q ss_pred HHHhcCCh-hHHHhHHHHHHHHHhHHHHHHHhhhhcCCCccchHHHHHHHHHHHHhhchhhHhHHHHHHHHhhcCCCCch
Q psy5460 134 LALQEGDA-DILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEV 212 (994)
Q Consensus 134 ~Ai~~~d~-~~~~~~a~~I~gra~RV~~Vak~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~~av~~a~~~l~~np~~~~ 212 (994)
..+.+++| +.|+.+.+.|.=-|++.+-++..=-.+...+.-|++|.....+|-+.+--.+. +. |..+.+.+++.
T Consensus 112 ~sv~~nQPP~iFv~~sK~VIl~ahkLVfiGDTl~r~~~~~dvr~~v~~~s~~Lc~~LK~~v~-aT----K~AAl~yPs~~ 186 (210)
T PF12026_consen 112 SSVSNNQPPKIFVAHSKFVILSAHKLVFIGDTLCREAQSADVRNEVLCSSNQLCDLLKTLVL-AT----KKAALQYPSPS 186 (210)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHT-S-HH
T ss_pred HhcccCCCcchhhhcCcEEEEEeeeeeeeccHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHhCCChH
Confidence 35666766 88888888888888888755555556666778999999999988765533322 22 23356677788
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHH
Q psy5460 213 DENEFIDASRLVYDGVREIRRAV 235 (994)
Q Consensus 213 ~~~~f~da~~~l~~~V~~vr~av 235 (994)
+.++..|....|-...+++|..+
T Consensus 187 AlqeMvd~v~eLs~~A~qfr~~L 209 (210)
T PF12026_consen 187 ALQEMVDRVKELSQHAQQFRTTL 209 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999888888887654
No 17
>KOG0980|consensus
Probab=41.04 E-value=9.6e+02 Score=31.42 Aligned_cols=121 Identities=26% Similarity=0.222 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHhhhhhhccccccCCchhhHHHHHHHHHH
Q psy5460 757 TTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYLQRIAL 836 (994)
Q Consensus 757 tt~dli~~Ak~iae~~~~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~vka~~~~~~~~~~~~~~~~~~~ 836 (994)
=|.+||.+||.++-+++-|.--|-.+-.. +.+- ..|+-.+.-|.--..||=+-|+|||+--.+
T Consensus 834 WTEGLISAaKAVa~aatvLVeaAdkvV~~-~gkf--EeLIVas~EIAAsTaQLVaASrVKA~k~S~-------------- 896 (980)
T KOG0980|consen 834 WTEGLISAAKAVAWAATVLVEAADKVVTG-TGKF--EELIVASQEIAASTAQLVAASRVKADKDSK-------------- 896 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHhcC-CCCc--HHHHHhhhHHHHHHHHHHHHHHhhccccch--------------
Confidence 37899999999999999888777666555 4444 788888899988888888888888764332
Q ss_pred HhhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhHhhcccccccccchhhhhHHHHHHHhhh
Q psy5460 837 YCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLM 916 (994)
Q Consensus 837 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~a~nlm~~v~~~v~~~~~as~k~~~~~~~~~~~~~~~~~~~~~~~ 916 (994)
. -+.|-+|+|..-++-..+|.+.+.+..++.-....+. |-+|+.|.=+-=|
T Consensus 897 ----------~------------------ld~L~~ask~Vtqat~~lVa~vks~~sq~e~~~~~DF-S~ls~h~~K~~EM 947 (980)
T KOG0980|consen 897 ----------K------------------LDALEVASKAVTQATAQLVASVKSGQSQLEQQQSLDF-SSLSLHQLKTQEM 947 (980)
T ss_pred ----------h------------------hHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc-ccccHHHHHHHHH
Confidence 1 1244445555555555555555566666655433332 4578888877777
Q ss_pred HHHHHHh
Q psy5460 917 NAVVLTV 923 (994)
Q Consensus 917 ~~~~~~~ 923 (994)
.-=|.-.
T Consensus 948 E~QVkvL 954 (980)
T KOG0980|consen 948 EQQVKVL 954 (980)
T ss_pred HHHHHHH
Confidence 6655443
No 18
>PF13675 PilJ: Type IV pili methyl-accepting chemotaxis transducer N-term; PDB: 3EZI_D 3EZH_B.
Probab=40.55 E-value=1.3e+02 Score=28.28 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q psy5460 21 EVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQ 100 (994)
Q Consensus 21 ~~~~~a~~F~eha~klvevA~lv~a~s~d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~sk~A~Enle~l~~~W~~~ 100 (994)
..=..+...+-.+.||+..+-+......++.....++.+...++.-=..+.+....+- .+....+.|+.+...| ..
T Consensus 13 ~~IN~AG~qRMlSQRia~~~~~~~~~~~~~~~~~~l~~~~~~f~~~l~~L~~~~~~~~---~~~~i~~~~~~v~~~W-~~ 88 (112)
T PF13675_consen 13 AAINLAGRQRMLSQRIAKLALLAAAGPDDAQARAELREAIAEFEQSLQALQNGDPSLG---PSPEIRAQLQQVEALW-QE 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH----S--GGGHHHHHHHHHHHT------HHHHHHHHH-------TT-HHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCcccc---chHHHHHHHHHHHHHH-HH
Confidence 3445577888889998876655544444556667777777766655444554444433 4567789999999999 54
Q ss_pred HHHHHHH
Q psy5460 101 VRVLTEA 107 (994)
Q Consensus 101 v~~L~~a 107 (994)
+......
T Consensus 89 ~~~~~~~ 95 (112)
T PF13675_consen 89 LRPALQA 95 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 19
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=39.14 E-value=5.1e+02 Score=31.80 Aligned_cols=118 Identities=16% Similarity=0.251 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHhHHHHHHHHHHHHHHHhcCChhHH
Q psy5460 67 YTQVINAARILAAR--PRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADIL 144 (994)
Q Consensus 67 ~PQVi~Aar~L~~~--P~sk~A~Enle~l~~~W~~~v~~L~~avDditd~~dFL~vSe~~I~~d~~~c~~Ai~~~d~~~~ 144 (994)
.|.+-..-..+..+ .=+..-+.++..+++.|......=.+++-+ |.+++...- .-=..|=.++|...|
T Consensus 60 ~~~~~elL~~l~~~~~~l~~~e~a~lr~~~r~~~~~~~iP~elv~~------~~~~~s~a~----~~W~~AR~~nDf~~F 129 (494)
T PF02074_consen 60 SPEIGELLEELEEEKEDLDEWERANLREMRRDYERATKIPEELVEE------LARLTSEAE----QAWEEARENNDFSAF 129 (494)
T ss_dssp SHHHHHHHHHHHCSGSSTTHHHHHHHHHHHHHHHHHHCS-HHHHHH------HHHHHHHHH----HHHHHHHHCT-HHHH
T ss_pred CHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhCCCHHHHHH------HHHHHHHHH----HHHHHHHhhCCHHHH
Confidence 44444433333333 223567788888888887654322222111 111111111 112334456777888
Q ss_pred HhHHHHHHHHHhHHHHHHH-------hhhhcCCCccchHHHHHHHHHHHHhhchhhH
Q psy5460 145 DRTAGAIRGRSARVANVVA-------AEMDNYEPGIYTERVLEAIKVLREQVMPNFA 194 (994)
Q Consensus 145 ~~~a~~I~gra~RV~~Vak-------~e~dnsedp~y~~~V~~a~~~L~~~i~p~v~ 194 (994)
...=..|-...++++.... .=.|.+|++.-...|......|+..+.|.+.
T Consensus 130 ~P~Le~iv~l~re~a~~~~~~~~~YDaLLd~yEpg~t~~~ld~~F~~lk~~l~~l~~ 186 (494)
T PF02074_consen 130 APYLEKIVELQREIAEYLGYELSPYDALLDDYEPGMTTEKLDEIFAELKAFLVPLLQ 186 (494)
T ss_dssp HHHHHHHHHHHHHHHHHCTSTTSHHHHHHHHHSTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776666655443 2356788889999999999999999988865
No 20
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=37.02 E-value=4.9e+02 Score=27.23 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5460 52 GVKMVRYAASSIASLYTQVINAARILAARPRS-KVAQENMDVFKEAWDSQVRVLTEAVDDIT 112 (994)
Q Consensus 52 ~vk~i~~aa~qLe~L~PQVi~Aar~L~~~P~s-k~A~Enle~l~~~W~~~v~~L~~avDdit 112 (994)
+.+.|+.+...|..- ++ ++ .|-.+|.| +|=++.++.-++.-..++.-|..++-.++
T Consensus 12 g~~~v~~A~~~L~~~-~~-lp---~lg~D~aS~~Wr~~~ld~skq~V~s~laAm~AatAqvv 68 (161)
T PF09141_consen 12 GQRAVQAAEEELDTP-AE-LP---PLGSDPASKRWRQNTLDVSKQNVNSQLAAMNAATAQVV 68 (161)
T ss_dssp HHHHHHHHHCCTTS----------S--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCC-cc-CC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555521 11 11 22334544 55566688888888888887777777776
No 21
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=36.76 E-value=2.1e+02 Score=28.04 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHhhhhhh
Q psy5460 358 NAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSK 409 (994)
Q Consensus 358 ~~Ak~iae~~~~l~~lar~iA~~c~D~~~k~~LL~~~e~I~~~~~QL~i~s~ 409 (994)
.+--.+++.++.+....-.+++.++-+|.|=..-+.+.++.++.+||+++..
T Consensus 32 ~~~~qL~D~~~~l~~~C~~yaD~~~~p~~KF~FREllsrLE~~~rqLr~~~s 83 (110)
T PF08919_consen 32 AQWSQLSDKLQQLHSSCSGYADSIIQPHAKFAFRELLSRLESQSRQLRSCGS 83 (110)
T ss_dssp --HHHHHHHHHHHHHHHHHHGGG-S-CCCHHHHHHHHHHHHHHHHHHCHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcCcchhhhHHHHHHHHHHHHHHHHhccC
Confidence 3345688899999999999999888888888888888999999999998754
No 22
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=33.89 E-value=2.4e+02 Score=27.62 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHhhhhhhc
Q psy5460 762 INAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKV 815 (994)
Q Consensus 762 i~~Ak~iae~~~~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QLki~s~v 815 (994)
..+--.+++.+..|....-.+++.++-++-|=.....+.|+.+...||++-.+.
T Consensus 31 ~~~~~qL~D~~~~l~~~C~~yaD~~~~p~~KF~FREllsrLE~~~rqLr~~~s~ 84 (110)
T PF08919_consen 31 MAQWSQLSDKLQQLHSSCSGYADSIIQPHAKFAFRELLSRLESQSRQLRSCGSS 84 (110)
T ss_dssp ---HHHHHHHHHHHHHHHHHHGGG-S-CCCHHHHHHHHHHHHHHHHHHCHSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCcchhhhHHHHHHHHHHHHHHHHhccCC
Confidence 444456889999999999999998888899999999999999999999995443
No 23
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=25.86 E-value=1.3e+03 Score=28.31 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCchHHHHHHH------HHHH---------HHHHHHhhccC----CCCCChHHHHHHHHHHHHhhhHHHHHHHHHhccCC
Q psy5460 727 TGNDIIVLAKH------MCMI---------MMEMTDFTRGR----GPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCP 787 (994)
Q Consensus 727 ~~NdIv~~ak~------Ma~~---------m~~m~~ftrg~----g~lktt~dli~~Ak~iae~~~~l~~~a~~~a~~c~ 787 (994)
..|++|++||- |-++ +++||.|+.|. ||-.--..-.+-++-+-|.--.+.+-.|+|+++-.
T Consensus 438 ~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s 517 (673)
T COG4192 438 TQGELIQAAKLAVVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNS 517 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46888887763 4444 57889998753 44333334455566666777777777888887754
Q ss_pred C
Q psy5460 788 E 788 (994)
Q Consensus 788 D 788 (994)
.
T Consensus 518 ~ 518 (673)
T COG4192 518 S 518 (673)
T ss_pred C
Confidence 3
No 24
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=21.63 E-value=1e+03 Score=25.55 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=38.3
Q ss_pred hhhHHHHHhhhhhhHHHhhhhHHHHHHHHHHHHHHHHhhhhhcChHHHHHhh
Q psy5460 569 ENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVS 620 (994)
Q Consensus 569 en~e~~~~~w~~~~~~~~e~~~~~k~~W~~~v~~L~~~vDdit~~~dFl~vs 620 (994)
++.+.....|+++.....+.+..|-..=..-.+.|...+|++++|+|+.-..
T Consensus 141 ~~~~~I~~~~~~l~~~~~~~a~~f~~~l~~~~~~ll~~lD~~vt~dDl~~~~ 192 (208)
T PF14644_consen 141 EHQEAIQNFWEKLLEEVRKEAQMFVARLAQFTEKLLLLLDEVVTPDDLQPPR 192 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHcCCCC
Confidence 3444445567777777777778887777778888888899999988875543
No 25
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=20.71 E-value=1.1e+03 Score=25.68 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHH
Q psy5460 23 EKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINAARILAAR-PRSKVAQENMDVFKEAWDSQV 101 (994)
Q Consensus 23 ~~~a~~F~eha~klvevA~lv~a~s~d~~~vk~i~~aa~qLe~L~PQVi~Aar~L~~~-P~sk~A~Enle~l~~~W~~~v 101 (994)
-...+---=-+.||+.++--+|.-....+....|..+.++|..+=-.++.|.+.-+.+ | |..|-..|..--.+.....
T Consensus 124 v~~sK~VIl~ahkLVfiGDTl~r~~~~~dvr~~v~~~s~~Lc~~LK~~v~aTK~AAl~yP-s~~AlqeMvd~v~eLs~~A 202 (210)
T PF12026_consen 124 VAHSKFVILSAHKLVFIGDTLCREAQSADVRNEVLCSSNQLCDLLKTLVLATKKAALQYP-SPSALQEMVDRVKELSQHA 202 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHHH
T ss_pred hhcCcEEEEEeeeeeeeccHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH
Confidence 3333333334556666666677777788889999999999999999999888876654 6 5566666766666666666
Q ss_pred HHHHHH
Q psy5460 102 RVLTEA 107 (994)
Q Consensus 102 ~~L~~a 107 (994)
..++.+
T Consensus 203 ~qfr~~ 208 (210)
T PF12026_consen 203 QQFRTT 208 (210)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 26
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=20.16 E-value=3.8e+02 Score=28.04 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHhccCCCcchHHHHHHHHHhhhhhhhHh
Q psy5460 757 TTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQL 809 (994)
Q Consensus 757 tt~dli~~Ak~iae~~~~l~~~a~~~a~~c~D~~~k~~Ll~~~e~i~t~~~QL 809 (994)
+-.+|..+|+.++++-..|.+-+..-+ .+ -|++||...-|+.-.++||
T Consensus 113 ~~~~Ll~Aar~L~~A~sdll~sa~p~~---~e--~Rq~ll~AA~~vg~as~~l 160 (161)
T PF09141_consen 113 DGDKLLDAARKLCGAFSDLLKSAEPES---KE--PRQNLLEAASRVGEASGQL 160 (161)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTSTTT----S--SCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCc---cc--cHHHHHHHHHHHHHHhhcc
Confidence 348899999999999888877655544 33 4599999999999888886
Done!