RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5460
(994 letters)
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo
sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Length = 256
Score = 236 bits (603), Expect = 2e-71
Identities = 170/237 (71%), Positives = 209/237 (88%)
Query: 1 METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR +A
Sbjct: 19 LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSA 78
Query: 61 SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAV 120
S + +L QVINAA LAA+P+SK+AQENMD+FKE W+ QVRVLT+AVDDIT+IDDFLAV
Sbjct: 79 SQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAV 138
Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE 180
SENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +EMDNYEPG+YTE+VLE
Sbjct: 139 SENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLE 198
Query: 181 AIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLM 237
A K+L VMP F +VE AV+ALS+ P + +DENEFIDASRLVYDG+R+IR+AVLM
Sbjct: 199 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLM 255
Score = 179 bits (454), Expect = 6e-51
Identities = 142/242 (58%), Positives = 182/242 (75%), Gaps = 20/242 (8%)
Query: 465 KKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLA 524
++ A++D + SF+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLA
Sbjct: 4 RQLRKAVMDHV--SDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLA 61
Query: 525 CSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQV 584
CS+SNNE+GVK+VR +AS + +L QVINAA LAA+P QS++
Sbjct: 62 CSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKP------------------QSKL 103
Query: 585 AQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILD 644
AQENMD+FKE W+ QVRVLT+AVDDIT+IDDFLAVSENHILEDVNKCV+ALQE D D LD
Sbjct: 104 AQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLD 163
Query: 645 RTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIA 704
RTAGAIRGR+ARV +VV +EMDNYEPG+YTE+VLEA K+L M + E + ++
Sbjct: 164 RTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALS 223
Query: 705 QQ 706
Sbjct: 224 SD 225
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo
sapiens} PDB: 1st6_A
Length = 1066
Score = 245 bits (624), Expect = 1e-67
Identities = 115/467 (24%), Positives = 195/467 (41%), Gaps = 20/467 (4%)
Query: 1 METDIPILVLIEAARS-----GNEKEVEKAAENFADHANKLVEVANLACSM-SNNEDGVK 54
+T PI +L AA + E+ ++ A NF +H+ KL A A ++ + N+ V+
Sbjct: 600 SDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKLGATAEKAAAVGTANKSTVE 659
Query: 55 MVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTI 114
++ + + L QV++AARIL P ++ A E+ + K W V +T VD+
Sbjct: 660 GIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDT 719
Query: 115 DDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIY 174
L SE I +D++KC +A+ +L A +I R+ R+ V E++N E +
Sbjct: 720 KSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKF 779
Query: 175 TERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRA 234
E V A L + + P A++ + F+D+ + V ++R A
Sbjct: 780 REAVKAASDELSKTISPMVM-----DAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREA 834
Query: 235 VLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEED 294
D P D+E P + ++ + +
Sbjct: 835 FQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEG-------EVPPPRPPPPEEKDEEFPE 887
Query: 295 KQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTM 354
++ + + E KW GNDII AK M ++M EM+ RG K
Sbjct: 888 QKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKR-- 945
Query: 355 DVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADV 414
+I AK I++A + +L +++A QC + + +LL +RI QL I S VKA +
Sbjct: 946 ALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATM 1005
Query: 415 QNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN 461
+ + L+ A+NLM +V TV+ + AS K
Sbjct: 1006 LGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDA 1052
Score = 147 bits (371), Expect = 3e-36
Identities = 97/477 (20%), Positives = 169/477 (35%), Gaps = 72/477 (15%)
Query: 480 SFMETDIPILVLIEAARS-----GNEKEVEKAAENFADHANKLVEVANLACSM-SNNEDG 533
F +T PI +L AA + E+ ++ A NF +H+ KL A A ++ + N+
Sbjct: 598 VFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKLGATAEKAAAVGTANKST 657
Query: 534 VKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFK 593
V+ ++ + + L QV++AARIL P +Q A E+ + K
Sbjct: 658 VEGIQASVKTARELTPQVVSAARILLRNP------------------GNQAAYEHFETMK 699
Query: 594 EAWDSQVRVLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGR 653
W V +T VD+ L SE I +D++KC +A+ +L A +I R
Sbjct: 700 NQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARR 759
Query: 654 SARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMR-------------------- 693
+ R+ V E++N E + E V A L + +
Sbjct: 760 ANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLD 819
Query: 694 --KMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKH-------------- 737
K+ + + + ++ + T
Sbjct: 820 SGYRILGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPE 879
Query: 738 --MCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPE------- 788
+ + + + + A+K S G ++ +++A E
Sbjct: 880 EKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRG 939
Query: 789 -SSTKKDLLAYLQRIALYCHQLNITSKVKAD--VQKPTNKDLLAYLQRIALYCHQLNITS 845
S TK+ L+ + IA ++ +K A K +LL +RI QL I S
Sbjct: 940 GSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILS 999
Query: 846 KVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAL 902
VKA + + + L+ A+NLM +V TV+ + AS K L
Sbjct: 1000 TVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTL 1056
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical
bundle, lipid binding; 1.8A {Gallus gallus} SCOP:
a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Length = 188
Score = 173 bits (438), Expect = 1e-49
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
Query: 285 EAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFT 344
E + E+ + Q + +L E KW GNDII AK M ++M EM+
Sbjct: 2 EKDEEFPEQKAGEAINQPMMMAARQL--HDEARKWSSKGNDIIAAAKRMALLMAEMSRLV 59
Query: 345 RGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQL 404
RG K + I AK I++A + +L +++A QC + + +LL +RI QL
Sbjct: 60 RGGSGNKRAL--IQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQL 117
Query: 405 NITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN 461
I S VKA + + + L+ A+NLM +V TV+ + AS K
Sbjct: 118 KILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDA 174
Score = 156 bits (396), Expect = 5e-44
Identities = 53/214 (24%), Positives = 81/214 (37%), Gaps = 36/214 (16%)
Query: 690 EAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFT 749
E + E+ + Q + +L E KW GNDII AK M ++M EM+
Sbjct: 2 EKDEEFPEQKAGEAINQPMMMAARQL--HDEARKWSSKGNDIIAAAKRMALLMAEMSRLV 59
Query: 750 RGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQL 809
RG K + I AK I++A + +L +++A QC + + +LL +RI QL
Sbjct: 60 RGGSGNKRAL--IQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQL 117
Query: 810 NITSKVKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSL 869
I S VKA + + + L
Sbjct: 118 KILSTVKATML--------------------------------GRTNISDEESEQATEML 145
Query: 870 IQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALD 903
+ A+NLM +V TV+ + AS K L
Sbjct: 146 VHNAQNLMQSVKETVREAEAASIKIRTDAGFTLR 179
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 167 bits (422), Expect = 2e-46
Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 22/276 (7%)
Query: 186 REQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELD 245
+V P E + EV + A+R ++D R+ ++
Sbjct: 16 EGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWS-----SKPGIPAA 70
Query: 246 PEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFF 305
I + + ++AA P ++ D P + + Q I
Sbjct: 71 EVGIGVVAEADAADAAGFPVPPDMEDDYEP--------ELLLMPSNQPVNQPILA----- 117
Query: 306 RSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISE 365
RE KW GNDII AK M ++M EM+ RG K + I AK I++
Sbjct: 118 --AAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAK 173
Query: 366 AGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSG 425
A + +L +++A QC + + +LL +RI QL I S VKA + +
Sbjct: 174 ASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEES 233
Query: 426 LDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN 461
+ L+ A+NLM +V TV+ + AS K
Sbjct: 234 EQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDA 269
Score = 144 bits (364), Expect = 1e-38
Identities = 55/251 (21%), Positives = 86/251 (34%), Gaps = 37/251 (14%)
Query: 654 SARVANVVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFR-- 711
+ + ++ G+ E A + E + Q
Sbjct: 58 ARKWSSKPGIPAAEVGIGVVAEAD-AADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPIL 116
Query: 712 SEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEA 771
+ RE KW GNDII AK M ++M EM+ RG K + I AK I++A
Sbjct: 117 AAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRAL--IQCAKDIAKA 174
Query: 772 GTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDLLAYL 831
+ +L +++A QC + + +LL +RI QL I S VKA +
Sbjct: 175 SDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATML----------- 223
Query: 832 QRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVAS 891
+ + L+ A+NLM +V TV+ + AS
Sbjct: 224 ---------------------GRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAAS 262
Query: 892 TKYPRQNQVAL 902
K L
Sbjct: 263 IKIRTDAGFTL 273
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 88.0 bits (217), Expect = 1e-17
Identities = 92/648 (14%), Positives = 193/648 (29%), Gaps = 165/648 (25%)
Query: 31 DHANK-LVEV------ANLACSMSNNEDGVKMVRYAASSIASLYTQ--VINAAR----IL 77
+ K ++ V N C + +D K + + I + ++ L
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCK--DVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 78 AARPRSKVA-------QENMDVFKEAWDSQVR-------VLTEAVDDITTIDDFLA---V 120
++ V + N ++ R + E D + + A V
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 121 SENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAE--MDNYEPGIY---- 174
S + + +L L+ ++D G+ G++ +V + + I+
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 175 -----TERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVR 229
E VLE ++ L Q+ PN+ +R D S + + RL+ +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSR----SDHSSNIKLRIHSIQAEL--RRLLKS--K 241
Query: 230 EIRRA--VLMNRTDEELDPEDIE-LDDQ----YTTSEAATMPRSKELGVDEYPDISGITT 282
VL + + + TT R K++ D +S TT
Sbjct: 242 PYENCLLVL----LNVQNAKAWNAFNLSCKILLTT-------RFKQV-TD---FLSAATT 286
Query: 283 AREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTD 342
++ + E + K+ L + +
Sbjct: 287 THISLDHHSM----------TLTPDEVKSL---LLKY--LDCRPQDLPREVLTTN----- 326
Query: 343 FTRGRGPLKTTMDVINAAKKISEAGT-------NLDKLTRQIADQCPESSTKKDLLAYLQ 395
P + ++ I A T N DKLT I + +
Sbjct: 327 ------PRRLSI--I-AESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMFD 376
Query: 396 RIALYCHQLNITSKV---------KADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLT 446
R++++ +I + + K+DV + +L L + + K ++
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----VEKQPKES----TIS 427
Query: 447 VKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILV------------LIEA 494
+ S Y+ K +N+ A H +IVD + +F D+ L
Sbjct: 428 IPSIYL-ELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 495 ARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIA---SLYTQV 551
+F K+ + + + + ++ +++ I Y ++
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 552 INA--------ARILAARPRSKVAQ-----ENMDVFKEAWDSQSQVAQ 586
+NA L + + + E+ +F+EA QV +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA---HKQVQR 589
Score = 70.7 bits (172), Expect = 2e-12
Identities = 107/743 (14%), Positives = 213/743 (28%), Gaps = 231/743 (31%)
Query: 242 EELDPEDIELDDQYTTSEAATMPR---SKELGVDEYPDISGITTAREAMRKM--TEEDKQ 296
+ D +D++ D MP+ SKE E I A ++ T KQ
Sbjct: 31 DNFDCKDVQ--D---------MPKSILSKE----EIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 297 KIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDV 356
+ + V+ F E L+ + + +
Sbjct: 76 E--EMVQKFVEEVLRINYK---F------------------------------------- 93
Query: 357 INAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQN 416
L I + + S +Y Q + ++ D Q
Sbjct: 94 ----------------LMSPIKTEQRQPSMMTR---------MYIEQRD---RLYNDNQV 125
Query: 417 ISGELIVSGLDSATSLIQAAKNLMNAVVLTV-------KSSYVASTKYPRQNQVAKKSHT 469
+ + VS L L QA L A + + K+ V
Sbjct: 126 FA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--------DVCLS--- 173
Query: 470 AIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSN 529
++ F I L N E E KL + + + ++
Sbjct: 174 ---YKVQCKMDF-----KIFWL----NLKNCNSPETVLEML----QKL--LYQIDPNWTS 215
Query: 530 NEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENM 589
D ++ SI + R+L ++P + V ++ +
Sbjct: 216 RSDHSSNIKLRIHSIQAELR------RLLKSKPYENC----LLVLLNVQNA------KAW 259
Query: 590 DVFKEAWDSQVRVLTEAVDDITTID----DFL-AVSENHILEDVNKCVLALQEGD---AD 641
+ F + ++L +TT DFL A + HI D + L E
Sbjct: 260 NAF----NLSCKIL------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 642 ILDRTAGAIR----GRSARVANVVAAEM-------DNYEPGIYTERVLEAIKVLREQGME 690
LD + + R +++A + DN++ + +++ I+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIES------- 361
Query: 691 AMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDI--IVLAKHMCMIMMEMTDF 748
++ + + +K+ ++ F I I+L +I ++
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFP-------------PSA--HIPTILL----SLIWFDVIKS 402
Query: 749 TRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQ 808
M V+N K S + T I E K + L R +
Sbjct: 403 --------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--DH 452
Query: 809 LNITSKVKADVQKPTNKD-----LLAY-LQRIALYCHQLNITSKVKADVQNISGELIVSG 862
NI +D P D + + L+ I ++ + V D + + ++
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 863 LDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNA---- 918
+A + + N + L Y+ P+ ++ L + +NL+ +
Sbjct: 512 --TAWNASGSILNTLQ--QLKFYKPYICDND-PKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 919 ---VVLTVKSSYVASTKYPRQNQ 938
+ L + + + +Q Q
Sbjct: 567 LLRIALMAEDEAIFEEAH-KQVQ 588
Score = 69.9 bits (170), Expect = 4e-12
Identities = 105/789 (13%), Positives = 210/789 (26%), Gaps = 262/789 (33%)
Query: 166 MDNYEPGIYTERVLEAIKVLREQVMPNFATR-VEVAVDALSTTPPKEVDE-----NEFID 219
MD +E G + + + + V + + NF + V+ ++ + +E+D + +
Sbjct: 7 MD-FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDA-VS 62
Query: 220 ASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISG 279
+ ++ + + ++ +E L + ++ S T R + Y
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRI-----NYKFLMSPIKTEQRQPSMMTRMY----- 112
Query: 280 ITTAREAMRKMTEEDKQKIAQ-QVEFFRSEKLKFDREVAKWDDTGNDIIVLAKH-MCMIM 337
R D Q A+ V R + R+ ++++ +
Sbjct: 113 -----IEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLI---DGV---- 158
Query: 338 MEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIAD--------QCPESSTKKD 389
G G KT + ++ K+ ++ C ++ +
Sbjct: 159 -------LGSG--KTWV-ALDVCLS--------YKVQCKMDFKIFWLNLKNC---NSPET 197
Query: 390 LLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKS 449
+L LQ++ +Q++ N + S D ++++ ++
Sbjct: 198 VLEMLQKL---LYQID---------PNWT-----SRSDHSSNIKLRIHSIQAE-----LR 235
Query: 450 SYVASTKYPRQ----NQVAKKSHTAIVD---RILL------VFSFMETDIPILVLIEAAR 496
+ S Y V + +ILL V F+ + ++
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 497 SG-NEKEVEKAAENFADH-ANKLVEVAN----LACSMSNNEDGVKMVRYAASSIASLYTQ 550
EV+ + D L S+ IA
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----------------IA----- 334
Query: 551 VINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDI 610
E++ WD N D +S + VL +
Sbjct: 335 ------------------ESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEP--AEY 371
Query: 611 TTIDDFLAVSENHILEDVN--KCVLAL--QEGDADILDRTAGAIRGRSARVANVVAAEMD 666
+ D L+V + +L+L + + + S E
Sbjct: 372 RKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQ 420
Query: 667 NYE-----PGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREV 721
E P IY E ++ E + V+ + K FD
Sbjct: 421 PKESTISIPSIYLE----------------LKVKLENEYALHRSIVDHYNIPK-TFD--- 460
Query: 722 AKWDDTGNDII------VLAKHMCMI-MMEMTDFTRGRGPLKTTMDVINAAKKISEAGTN 774
DD + + H+ I E R +D +KI T
Sbjct: 461 --SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVFLDFRFLEQKIRHDSTA 513
Query: 775 LDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTN----KDLLAY 830
+ S +L LQ++ Y + I P +L +
Sbjct: 514 WN---------ASGS-----ILNTLQQLKFY--KPYICD------NDPKYERLVNAILDF 551
Query: 831 LQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVA 890
L +I SK T L++ A LM + +
Sbjct: 552 LPKIEENLIC----SK-------------------YTDLLRIA--LMA------EDEAIF 580
Query: 891 STKYPRQNQ 899
+ +Q Q
Sbjct: 581 EEAH-KQVQ 588
Score = 30.2 bits (67), Expect = 4.0
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 60/200 (30%)
Query: 1 METDIPILVLIE------AARSGNE----------KEVEKAAENFADHANKLVEVANLAC 44
+ ++V+ + + E + K +A H +V+ N+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPK 457
Query: 45 SMSNN------EDGVKMVRYAASSIA------------SLYTQV-IN----AARILAARP 81
+ ++ D Y S I +L+ V ++ +I
Sbjct: 458 TFDSDDLIPPYLDQ-----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 82 RSKVAQENMDVFKEAWDSQVRVLTEAVDD--------ITTIDDFLAVSENHILEDVNKCV 133
+ ++ Q++ + D + I DFL E +++ +
Sbjct: 513 AWNASGSILNTL-----QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 134 L--ALQEGDADILDRTAGAI 151
L AL D I + +
Sbjct: 568 LRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.2 bits (161), Expect = 5e-11
Identities = 79/534 (14%), Positives = 155/534 (29%), Gaps = 159/534 (29%)
Query: 430 TSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPIL 489
L+ + A L + + P + A T + LV F+ +
Sbjct: 18 HVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAE---LVGKFLGY---VS 69
Query: 490 VLIEAARSGNEKEVEKAA-----ENF---AD-HANKLVEVANLACSMSNNEDGVKMVRYA 540
L+E ++ G +V + D HA LA + D +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA--------LAAKLLQENDTTLVKTKE 121
Query: 541 ASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVA-----QENMDV-FKE 594
I + ARI+A RP K + +F+ + +Q+ Q N D F+E
Sbjct: 122 L--IKNYI-----TARIMAKRPFDKKSNS--ALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 595 AWDSQVRVLTEAVDDITTIDDFLAVSENHILE---DVNKCVLALQEG------------- 638
+R L + + + D + S + E +G
Sbjct: 173 -----LRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 639 -DADILD---------------------RTAG--------AIRGRSARVANVVAA----E 664
D D L + G ++G + +V A E
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 665 MDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKW 724
D++E + V +AI VL G+ + + + L +
Sbjct: 286 TDSWES--FFVSVRKAITVLFFIGVR-------------CYEA--YPNTSLP-PSILEDS 327
Query: 725 DDTGNDIIVLAKHMCMIMMEMTDFTRG--RGPLKTTMDVINA----AKKISEAGTN---- 774
+ + M I + ++ ++ N+ K++ + N
Sbjct: 328 LENNEGV---PSPMLSI--------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 775 ---------LDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQ-LNIT----SKVKADVQ 820
L L + S + + + +R + ++ L + S +
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 821 KPTNKDLLAYLQRIALYCHQLNITSKVK-----ADVQNISGELIVSGLDSATSL 869
NKDL+ ++ + I V +D++ +SG + +D L
Sbjct: 437 DLINKDLVK--NNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 65.8 bits (160), Expect = 6e-11
Identities = 104/725 (14%), Positives = 187/725 (25%), Gaps = 327/725 (45%)
Query: 10 LIEAARSGNEKEVEKAA-----ENF---AD-HANKLVEVANLACSMSNNEDGVKMVRYAA 60
L+E ++ G +V + D HA LA + D +
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA--------LAAKLLQENDTTLVKTKEL 122
Query: 61 SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDIT------TI 114
I + ARI+A RP K + +F+ + ++ +
Sbjct: 123 --IKNYI-----TARIMAKRPFDKKSNS--ALFRAVGEGNAQL-------VAIFGGQGNT 166
Query: 115 DDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIY 174
DD+ E L++ L Y+ Y
Sbjct: 167 DDYF--EE-------------LRD-----L------------------------YQ--TY 180
Query: 175 TERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRA 234
V + IK E + L T DA ++ G+ I
Sbjct: 181 HVLVGDLIKFSAETLSE------------LIRTTL---------DAEKVFTQGL-NILEW 218
Query: 235 VLMNRTDEELDPEDIELDDQYTTSEAATMPRSKELGVDEYPDISGITTAREAMRKMTEED 294
+ + P D Y S + P + G+
Sbjct: 219 L----ENPSNTP-----DKDYLLSIPISCP------------LIGVI------------- 244
Query: 295 KQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTM 354
Q + +V AK + E+ + +G T
Sbjct: 245 -----QLAHY----------------------VVTAKLLGFTPGELRSYLKG-----ATG 272
Query: 355 ---DVINAAKKISEAGT--NLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQ----LN 405
++ A I+E + + R+ + L I + C++ +
Sbjct: 273 HSQGLV-TAVAIAETDSWESFFVSVRKA-------------ITVLFFIGVRCYEAYPNTS 318
Query: 406 ITSKVKAD-VQNISGE------LIVSGLDSAT--------------------SLIQAAKN 438
+ + D ++N E L +S L SL+ AKN
Sbjct: 319 LPPSILEDSLEN--NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 439 LMNAVV------LTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFS--FMETDIPILV 490
L VV L + + K P ++ + +R L FS F+ P+
Sbjct: 377 L---VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS---ERK-LKFSNRFL----PVAS 425
Query: 491 -----LIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIA 545
L+ A K++ K +F ++ + + DG + R + SI+
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFN--------AKDIQIPVYDTFDGSDL-RVLSGSIS 476
Query: 546 SLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTE 605
RI+ + + + W++ +
Sbjct: 477 E---------RIV-----------------------DCIIRLPVK-----WETTTQ---- 495
Query: 606 AVDDITTIDDFLAVSENHILEDVNKCVLALQEG---DADILDRTAGAIRGRSARVANVVA 662
T I DF G + + T G RV +VA
Sbjct: 496 --FKATHILDF---------------------GPGGASGLGVLTHRNKDGTGVRV--IVA 530
Query: 663 AEMDN 667
+D
Sbjct: 531 GTLDI 535
Score = 60.4 bits (146), Expect = 3e-09
Identities = 56/325 (17%), Positives = 102/325 (31%), Gaps = 105/325 (32%)
Query: 346 GRGPLKTTMDVIN---AAKKI-SEAGTNLDKLTRQ-----IAD---QCPESSTKKDLLAY 393
G G MD+ AA+ + + A D + I D P + T
Sbjct: 1630 GMG-----MDLYKTSKAAQDVWNRA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 394 LQRI-ALYCHQLNITSKVKADVQNISGELIVSGLDSATSLI-QAAKNLMNAVVLTVKSSY 451
+RI Y + + D + + ++ + +TS ++ K L++ T
Sbjct: 1681 GKRIRENY---SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS---AT----- 1729
Query: 452 VASTKYPRQN-QVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENF 510
Q Q A L + E + K + A F
Sbjct: 1730 --------QFTQPA-----------LTLME--------KAAFEDLK---SKGLIPADATF 1759
Query: 511 ADH------ANKLVEVANLACSMSNNEDGVKMVRY---AASSIASLYTQVINAARILAAR 561
A H A L +A+ MS E V++V Y + ++A
Sbjct: 1760 AGHSLGEYAA--LASLAD---VMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 562 PRSKVA---QENMDVFKEAWDSQS----QVAQENMDVFKEAWDSQVRVL---TEAVDDIT 611
P A QE + E ++ ++ N++ + Q V A+D +T
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE------NQQY-VAAGDLRALDTVT 1866
Query: 612 TIDDFL--------AVSENHILEDV 628
+ +F+ + ++ LE+V
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 53.1 bits (127), Expect = 4e-07
Identities = 51/357 (14%), Positives = 97/357 (27%), Gaps = 161/357 (45%)
Query: 86 AQE-NM--------DVFKEAWD-------------------------------SQVRVLT 105
+QE M ++ W+ + + +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 106 EAVDDIT--TIDDFLAVSENHILEDVNKCVLALQ-EGDADILDRTAGAIRGRSARVANVV 162
E + TI D +E I +++N+ + + +L T + A +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEK-IFKEINEHSTSYTFRSEKGLLSATQ------FTQPA-LT 1737
Query: 163 AAEMDNYEPGIYTERVLEAI-KVLREQ-VMPN---FATRV-----E----VAV-DALSTT 207
E A + L+ + ++P FA E ++ D +S
Sbjct: 1738 LMEK--------------AAFEDLKSKGLIPADATFA---GHSLGEYAALASLADVMS-- 1778
Query: 208 PPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSEAATMPRSK 267
+V+ R + M +PR
Sbjct: 1779 ---------IESLVEVVF------YRGMTM----------------------QVAVPRD- 1800
Query: 268 ELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGND-- 325
ELG Y + I R A ++E Q + ++V + E+ N
Sbjct: 1801 ELGRSNY-GMIAINPGRVAA-SFSQEALQYVVERVGKRTGWLV----EIV------NYNV 1848
Query: 326 ---IIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAK--KISEAGTNLDKLTRQI 377
V A + R L T +V+N K KI ++ +L + +
Sbjct: 1849 ENQQYVAAGDL-----------RA---LDTVTNVLNFIKLQKI-----DIIELQKSL 1886
Score = 51.6 bits (123), Expect = 1e-06
Identities = 42/300 (14%), Positives = 85/300 (28%), Gaps = 123/300 (41%)
Query: 567 AQE-NM--------DVFKEAWD------------SQSQVAQEN---MDV-FKEAWDSQVR 601
+QE M ++ W+ S + N + + F ++R
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 602 VLTEAVDDITTIDDFLAVSENHILEDVNKCVLALQ-EGDADILDRTA------------- 647
A+ TI D +E I +++N+ + + +L T
Sbjct: 1686 ENYSAM-IFETIVDGKLKTEK-IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 648 -GAIRGRSARVANVVAA-----EMDNYEPGIYT-----ERVL---EAIKVLREQG----- 688
++ + A+ A E Y V+ ++V+ +G
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGE--------YAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 689 -------------MEAMR------KMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGN 729
M A+ ++E Q + ++V + E+ N
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV----EIV------N 1845
Query: 730 D-----IIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAK--KISEAGTNLDKLTRQI 782
V A + R L T +V+N K KI ++ +L + +
Sbjct: 1846 YNVENQQYVAAGDL-----------RA---LDTVTNVLNFIKLQKI-----DIIELQKSL 1886
Score = 49.7 bits (118), Expect = 5e-06
Identities = 57/348 (16%), Positives = 106/348 (30%), Gaps = 120/348 (34%)
Query: 5 IPILVLIEAARSGNEKEVEKAAENFADHANKL----VEVANLACSMSNNEDGVKMVRYAA 60
P++ +I+ A ++ A L E+ + + + G+ A
Sbjct: 238 CPLIGVIQLA-------------HYVVTAKLLGFTPGELRSYLKGATGHSQGL----VTA 280
Query: 61 SSIA------SLYTQVINAARILA--------ARPRSKVAQENMDVFKEAWDSQ------ 100
+IA S + V A +L A P + + + +++ ++
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL---EDSLENNEGVPSP 337
Query: 101 ---VRVLT-EAVDD-ITTIDDFLAVSENHI---LEDVN---KCVLALQEGDADILDRTAG 149
+ LT E V D + + L + + L VN V++ G L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLP-AGKQVEISL--VNGAKNLVVS---GPPQSLYGLNL 391
Query: 150 AIRGRSARVANVVAAEMDNYE-PGIYTERVLEAIKVLREQVMPNFATR-VEVAV------ 201
+R A + +D P ++ER K F+ R + VA
Sbjct: 392 TLRKAKA------PSGLDQSRIP--FSER-----K-------LKFSNRFLPVASPFHSHL 431
Query: 202 --DALSTTPPKEVDENEFIDASRL---VY---DGVREIRRAVLMNRTDEELDPEDIELDD 253
A V N +A + VY DG ++R + + D
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVL------SGSISE---RIVD 481
Query: 254 QYTTS----EAATMPRSKELGVDEYP-DISGITTAREAMRKMTEEDKQ 296
E T ++ + +D P SG+ +T +K
Sbjct: 482 CIIRLPVKWETTTQFKATHI-LDFGPGGASGLG-------VLTHRNKD 521
Score = 48.9 bits (116), Expect = 1e-05
Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 45/163 (27%)
Query: 6 PILVLIEAA--RSGNEKEVEKAAENFADH------ANKLVEVANLACSMSNNEDGVKMVR 57
P L L+E A K + A FA H A L +A+ MS E V++V
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA--LASLAD---VMSI-ESLVEVVF 1787
Query: 58 YAASSIASLYTQVINAAR---ILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITTI 114
Y R + A PR ++ + N + A + + + + + +
Sbjct: 1788 Y----------------RGMTMQVAVPRDELGRSNYGMI--AINPGRVAASFSQEALQYV 1829
Query: 115 DDFLAVSENHILEDVN-KC-----VLALQEGDADILDRTAGAI 151
+ + ++E VN V A GD LD T +
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAA---GDLRALD-TVTNV 1868
Score = 47.7 bits (113), Expect = 2e-05
Identities = 48/286 (16%), Positives = 87/286 (30%), Gaps = 106/286 (37%)
Query: 768 ISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQKPTNKDL 827
I + L +L R D ++ LNI ++ P +KD
Sbjct: 188 IKFSAETLSELIRTTLDAEK----------------VFTQGLNILEWLENPSNTP-DKDY 230
Query: 828 LAY----------LQRIALY---CHQLNIT-SKVKADVQNISGELIVSGLDSATSLIQAA 873
L +Q +A Y L T ++++ ++ +G GL +A I
Sbjct: 231 LLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATG--HSQGLVTAV-AIAET 286
Query: 874 K---NLMNAVVLTVKSSY---VASTK-YPRQNQVALDSATSLIQAAKNL-------MNAV 919
+ +V + + V + YP +L S+++ + M
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPN---TSLPP--SILEDSLENNEGVPSPM--- 338
Query: 920 VLTVKS-------SYVAST--KYPRQNQVA-----SP--IVV--------------WKMK 949
L++ + YV T P QV +VV K K
Sbjct: 339 -LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 950 APEKKPLVRPEKPEEVRAKVRKGSQKK--VQN---PIKALSEFQSP 990
AP ++++ S++K N P+ + F S
Sbjct: 398 AP----------SGLDQSRI-PFSERKLKFSNRFLPVAS--PFHSH 430
Score = 46.2 bits (109), Expect = 7e-05
Identities = 47/312 (15%), Positives = 92/312 (29%), Gaps = 117/312 (37%)
Query: 4 DIPILVLIEAARSGNEKEVEKAAENFADHANKLVEV-------------------ANLAC 44
+ V I S E+F K + V + L
Sbjct: 276 GLVTAVAIAETDSW---------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 45 SMSNNED---------GV------KMVRYAASSIAS---LYTQVINAAR--ILAARPRS- 83
S+ NNE + V S + + + ++N A+ +++ P+S
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 84 --------KV-AQENMDVFKEAWDSQVRV-LTEAVDDITTIDDFLAVSE---NHILEDVN 130
K A +D Q R+ +E + FL V+ +H+L +
Sbjct: 387 YGLNLTLRKAKAPSGLD--------QSRIPFSERKLKFSN--RFLPVASPFHSHLLVPAS 436
Query: 131 KCVLALQEGDADILDRTAGAIRGRSARVANVV-----AAEMDNYEPGIYTERVLEAIKVL 185
+ D++ + + ++ V +++ I +ER+++ I +
Sbjct: 437 DLINK------DLVKNNV-SFNAKDIQIP--VYDTFDGSDLRVLSGSI-SERIVDCI--I 484
Query: 186 REQVMPNFATRVEVAVDALSTTPPKEVDENEFID--------ASRLVYD-----GVREIR 232
R V + E +T +D L + GVR I
Sbjct: 485 RLPV--KW----ETTTQFKATH---------ILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 233 RAVLMNRTDEEL 244
L D++
Sbjct: 530 AGTLDINPDDDY 541
Score = 40.4 bits (94), Expect = 0.003
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 12 EAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLY--TQ 69
A S +++ ++ E LVE+ N N + + V AA + +L T
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNY------NVENQQYV--AAGDLRALDTVTN 1867
Query: 70 VINAARI 76
V+N ++
Sbjct: 1868 VLNFIKL 1874
Score = 35.8 bits (82), Expect = 0.10
Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 38/168 (22%)
Query: 753 GPLKTTMDV-----INAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLA-YLQRIALYC 806
G L+ + V A++ + L + T A E +T +L+ +L Y
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGKFLG----Y- 67
Query: 807 HQLNITSKVKADVQKPTNKDLLAYLQRI-ALYCHQLNITSKVKADVQNISGELIVSGLDS 865
++S V+ ++ L L Y +I + L L
Sbjct: 68 ----VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA------------LAAKLLQE 111
Query: 866 ATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAK 913
+ + K L +K+ A R +SA L +A
Sbjct: 112 NDTTLVKTKEL-------IKNYITARIMAKRPFDKKSNSA--LFRAVG 150
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein;
NMR {Mus musculus} SCOP: a.216.1.1
Length = 139
Score = 46.7 bits (110), Expect = 4e-06
Identities = 16/75 (21%), Positives = 33/75 (44%)
Query: 14 ARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINA 73
+ G+ E+ + A A + LV ++ + + + AA +A +++ A
Sbjct: 64 SSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEA 123
Query: 74 ARILAARPRSKVAQE 88
A+ AA P S+ Q+
Sbjct: 124 AKGAAAHPDSEEQQQ 138
Score = 46.7 bits (110), Expect = 4e-06
Identities = 16/75 (21%), Positives = 33/75 (44%)
Query: 495 ARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINA 554
+ G+ E+ + A A + LV ++ + + + AA +A +++ A
Sbjct: 64 SSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEA 123
Query: 555 ARILAARPRSKVAQE 569
A+ AA P S+ Q+
Sbjct: 124 AKGAAAHPDSEEQQQ 138
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.048
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 15/65 (23%)
Query: 660 VVAAEMDNYEPGIYTERVLEAIKVLREQGMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDR 719
+ A+ EP E+I+ RE+ + ++++ K + E K +
Sbjct: 74 IAQADRLTQEP--------ESIRKWREEQRKRLQELDAASKVMEQEWRE-------KAKK 118
Query: 720 EVAKW 724
++ +W
Sbjct: 119 DLEEW 123
Score = 29.0 bits (64), Expect = 5.9
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 285 EAMRKMTEEDKQKIAQQVEFFRSEK----LKFDREVAKW 319
E++RK EE ++++ + + + K +++ +W
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of
metallocarboxypept carboxypeptidase, hydrolase; 2.10A
{Trypanosoma cruzi}
Length = 505
Score = 32.9 bits (74), Expect = 0.57
Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 16/185 (8%)
Query: 568 QENMDVFKEAWDSQSQVAQENMDVFKEAWDSQVRVLTEAVDDITTIDDFLAVSENHILED 627
+ ++ +++ ++ + N+ + AW+ + + E V+ T + E
Sbjct: 63 RALIEEAEKSVGDLEKLQRANLREMRRAWELENLLPEEFVERKTVLTTKAHQVWKTCREK 122
Query: 628 VNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQ 687
+ + L R G +R + A +D YEPG+ +R+ E +R
Sbjct: 123 NDFAGFLPTLKELIALFREEGKLRAG-NSGKHPYEALVDIYEPGMTLQRLDEIFGNVRSW 181
Query: 688 GMEAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTD 747
+ ++ +E ++K E K F + D
Sbjct: 182 ----LPELLKEVQEKQKALGETVLEPKGPFPVSKQEALCR-----FFMDVWKF------D 226
Query: 748 FTRGR 752
F GR
Sbjct: 227 FDGGR 231
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin,
transferase-transferase inhibitor complex; HET: IM5;
2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A*
3fow_A*
Length = 275
Score = 31.4 bits (71), Expect = 1.2
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 646 TAGAIRGRSARVANVVAAEMDNYEPGIYTERVLE-----AIKVLREQGMEAMRKMTEEDK 700
G +R +V ++ G + ++ IK+ + A K+ +
Sbjct: 191 VIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKI----ALGACAKLATKYA 246
Query: 701 QKIAQQVEFFRSEKLKFDREV 721
+ E + +KL + ++
Sbjct: 247 KGEF---EAYVEQKLISEEDL 264
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA
binding protein; 1.60A {Trypanosoma brucei} SCOP:
a.4.5.46
Length = 92
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 290 MTEEDKQKIAQQVEF-FRSEKLKFDR 314
++ E+KQK+ +QVEF F ++ D
Sbjct: 6 LSSENKQKLQKQVEFYFSDVNVQRDI 31
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 695 MTEEDKQKIAQQVEF-FRSEKLKFDR 719
++ E+KQK+ +QVEF F ++ D
Sbjct: 6 LSSENKQKLQKQVEFYFSDVNVQRDI 31
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR
{Mus musculus}
Length = 131
Score = 30.1 bits (67), Expect = 1.4
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 14 ARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINA 73
+ G+ E+ + A A + LV ++ + + + AA +A +++ A
Sbjct: 34 SSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEA 93
Query: 74 ARILAARPRSKVAQENM 90
A+ AA P S+ Q+ +
Sbjct: 94 AKGAAAHPDSEEQQQRL 110
Score = 30.1 bits (67), Expect = 1.4
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 495 ARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVINA 554
+ G+ E+ + A A + LV ++ + + + AA +A +++ A
Sbjct: 34 SSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEA 93
Query: 555 ARILAARPRSKVAQENM 571
A+ AA P S+ Q+ +
Sbjct: 94 AKGAAAHPDSEEQQQRL 110
>1r0d_A HIP1-related, huntingtin interacting protein 12, HIP 12;
endocytosis, actin-binding, structural genomics, PSI,
protein structure initiative; 1.90A {Homo sapiens} SCOP:
a.216.1.1
Length = 206
Score = 30.4 bits (68), Expect = 1.9
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 762 INAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQK 821
I+A+K + T L + ++ + ++L+ IA QL SKVKA+
Sbjct: 108 ISASKAVGWGATQLVEAADKVVLH---TGKYEELIVCSHEIAASTAQLVAASKVKANKHS 164
Query: 822 PTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGL 863
P L + + + ++K + + SGL
Sbjct: 165 PHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTMDFSGL 206
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 31.3 bits (71), Expect = 1.9
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 116 DFLAVS----ENHILEDVNKCVLALQEGDADILDRTAGAIRG-RSARV 158
DF V + I +DV VL Q I +RT A G A V
Sbjct: 121 DFDFVREIIEQGAIPDDVTIQVLT-QCRPELI-ERTFQACSGAPRAIV 166
Score = 31.3 bits (71), Expect = 1.9
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 615 DFLAVS----ENHILEDVNKCVLALQEGDADILDRTAGAIRG-RSARV 657
DF V + I +DV VL Q I +RT A G A V
Sbjct: 121 DFDFVREIIEQGAIPDDVTIQVLT-QCRPELI-ERTFQACSGAPRAIV 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 2.5
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 18/43 (41%)
Query: 871 QAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSL-IQAA 912
QA K L ++ L Y DSA +L I+A
Sbjct: 20 QALKKLQASLKL-----YA-----D-------DSAPALAIKAT 45
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase;
2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A
1ka4_A
Length = 499
Score = 29.1 bits (64), Expect = 9.4
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 8/119 (6%)
Query: 164 AEMDNYEPGIYTERVLEAIKVLREQVMPNFATRVEVAVDA-----LSTTPPKEVDENEFI 218
A +D YE G+ T V + +VL +++ P +E +E E +
Sbjct: 158 ALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNL 217
Query: 219 DASRLV-YDGVREIRRAVLMNRTDEELDPEDIELDDQYTTSE--AATMPRSKELGVDEY 274
+ + R V + E D+ + +Y + + E G Y
Sbjct: 218 WILQKFGFPLGTRARLDVSAHPFTTEFGIRDVRITTRYEGYDFRRTILSTVHEFGHALY 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.128 0.345
Gapped
Lambda K H
0.267 0.0412 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,529,750
Number of extensions: 923395
Number of successful extensions: 2798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2744
Number of HSP's successfully gapped: 69
Length of query: 994
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 891
Effective length of database: 3,825,930
Effective search space: 3408903630
Effective search space used: 3408903630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)