RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5460
(994 letters)
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 181
Score = 185 bits (472), Expect = 9e-55
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Query: 292 EEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLK 351
E+ + Q + E KW GNDII AK M ++M EM+ RG K
Sbjct: 7 EQKAGEAINQP--MMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNK 64
Query: 352 TTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVK 411
+I AK I++A + +L +++A QC + + +LL +RI QL I S VK
Sbjct: 65 R--ALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVK 122
Query: 412 ADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQN 461
A + + + L+ A+NLM +V TV+ + AS K
Sbjct: 123 ATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDA 172
Score = 169 bits (430), Expect = 5e-49
Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 36/207 (17%)
Query: 697 EEDKQKIAQQVEFFRSEKLKFDREVAKWDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLK 756
E+ + Q + E KW GNDII AK M ++M EM+ RG K
Sbjct: 7 EQKAGEAINQP--MMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNK 64
Query: 757 TTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSKVK 816
+I AK I++A + +L +++A QC + +
Sbjct: 65 R--ALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIR------------------------ 98
Query: 817 ADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAKNL 876
+LL +RI QL I S VKA + + + L+ A+NL
Sbjct: 99 --------TNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNL 150
Query: 877 MNAVVLTVKSSYVASTKYPRQNQVALD 903
M +V TV+ + AS K L
Sbjct: 151 MQSVKETVREAEAASIKIRTDAGFTLR 177
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 178 bits (453), Expect = 7e-53
Identities = 93/124 (75%), Positives = 108/124 (87%)
Query: 114 IDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGI 173
IDDFLAVSENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +EMDNYEPG+
Sbjct: 1 IDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGV 60
Query: 174 YTERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRR 233
YTE+VLEA K+L VMP F +VE AV+ALS+ P + +DENEFIDASRLVYDG+R+IR+
Sbjct: 61 YTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRK 120
Query: 234 AVLM 237
AVLM
Sbjct: 121 AVLM 124
Score = 112 bits (282), Expect = 7e-30
Identities = 60/77 (77%), Positives = 67/77 (87%)
Query: 613 IDDFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGI 672
IDDFLAVSENHILEDVNKCV+ALQE D D LDRTAGAIRGR+ARV +VV +EMDNYEPG+
Sbjct: 1 IDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGV 60
Query: 673 YTERVLEAIKVLREQGM 689
YTE+VLEA K+L M
Sbjct: 61 YTEKVLEATKLLSNTVM 77
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 137
Score = 148 bits (376), Expect = 2e-42
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 5/135 (3%)
Query: 116 DFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYT 175
L SE I +D++KC +A+ +L A +I R+ R+ V E++N E +
Sbjct: 3 SLLDASEEAIKKDLDKCKVAMANMQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR 62
Query: 176 ERVLEAIKVLREQVMPNFATRVEVAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAV 235
E V A L + + P A++ + F+D+ + V ++R A
Sbjct: 63 EAVKAASDELSKTISPMVM-----DAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAF 117
Query: 236 LMNRTDEELDPEDIE 250
D P D+E
Sbjct: 118 QPQEPDFPPPPPDLE 132
Score = 94.5 bits (235), Expect = 2e-23
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 615 DFLAVSENHILEDVNKCVLALQEGDADILDRTAGAIRGRSARVANVVAAEMDNYEPGIYT 674
L SE I +D++KC +A+ +L A +I R+ R+ V E++N E +
Sbjct: 3 SLLDASEEAIKKDLDKCKVAMANMQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR 62
Query: 675 ERVLEAIKVLREQ 687
E V A L +
Sbjct: 63 EAVKAASDELSKT 75
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 131
Score = 141 bits (357), Expect = 7e-40
Identities = 77/113 (68%), Positives = 101/113 (89%)
Query: 1 METDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAA 60
+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLACS+SNNE+GVK+VR +A
Sbjct: 19 LETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSA 78
Query: 61 SSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTEAVDDITT 113
S + +L QVINAA LAA+P+SK+AQENMD+FKE W+ QVRVLT+AVDDIT+
Sbjct: 79 SQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITS 131
Score = 136 bits (343), Expect = 6e-38
Identities = 81/148 (54%), Positives = 110/148 (74%), Gaps = 20/148 (13%)
Query: 465 KKSHTAIVDRILLVFSFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEVANLA 524
++ A++D + SF+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+EVANLA
Sbjct: 4 RQLRKAVMDHV--SDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLA 61
Query: 525 CSMSNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQV 584
CS+SNNE+GVK+VR +AS + +L QVINAA LAA+P+SK +
Sbjct: 62 CSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSK------------------L 103
Query: 585 AQENMDVFKEAWDSQVRVLTEAVDDITT 612
AQENMD+FKE W+ QVRVLT+AVDDIT+
Sbjct: 104 AQENMDLFKEQWEKQVRVLTDAVDDITS 131
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 72
Score = 87.9 bits (218), Expect = 7e-22
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 47 SNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQVRVLTE 106
+ N+ V+ ++ S L QV++AARIL P ++ A E+ + K W V +T
Sbjct: 6 TANKTTVEGIQATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTG 65
Query: 107 AVDDIT 112
VD+
Sbjct: 66 LVDEAI 71
Score = 76.7 bits (189), Expect = 6e-18
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
Query: 528 SNNEDGVKMVRYAASSIASLYTQVINAARILAARPRSKVAQENMDVFKEAWDSQSQVAQE 587
+ N+ V+ ++ S L QV++AARIL P ++ A E+ +
Sbjct: 6 TANKTTVEGIQATVKSARELTPQVVSAARILLRNPGNQAAYEHFET-------------- 51
Query: 588 NMDVFKEAWDSQVRVLTEAVDDIT 611
K W V +T VD+
Sbjct: 52 ----MKNQWIDNVEKMTGLVDEAI 71
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 138
Score = 60.7 bits (147), Expect = 1e-11
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 16/139 (11%)
Query: 431 SLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETDIPILV 490
+ AA + A+ ++ +T + + + T IL V + +
Sbjct: 15 GVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDT-----ILTVTENIFSS----- 64
Query: 491 LIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQ 550
G+ E+ + A A + LV ++ + + + AA +A +
Sbjct: 65 ------MGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAK 118
Query: 551 VINAARILAARPRSKVAQE 569
++ AA+ AA P S+ Q+
Sbjct: 119 MVEAAKGAAAHPDSEEQQQ 137
Score = 60.7 bits (147), Expect = 2e-11
Identities = 16/76 (21%), Positives = 33/76 (43%)
Query: 13 AARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSIASLYTQVIN 72
+ G+ E+ + A A + LV ++ + + + AA +A +++
Sbjct: 62 FSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVE 121
Query: 73 AARILAARPRSKVAQE 88
AA+ AA P S+ Q+
Sbjct: 122 AAKGAAAHPDSEEQQQ 137
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 125
Score = 53.0 bits (127), Expect = 5e-09
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 350 LKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSK 409
++ A ++ A L + +A + +S + ++A + AL QL +K
Sbjct: 5 PHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTK 64
Query: 410 VKADVQNISGELIVSGLDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQV 463
V A +S L++A + + AV V +S A+ V
Sbjct: 65 VVAPT--------ISSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGV 110
Score = 46.0 bits (109), Expect = 1e-06
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 41/161 (25%)
Query: 755 LKTTMDVINAAKKISEAGTNLDKLTRQIADQCPESSTKKDLLAYLQRIALYCHQLNITSK 814
++ A ++ A L + +A + +S + ++A + AL QL +K
Sbjct: 5 PHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTK 64
Query: 815 VKADVQKPTNKDLLAYLQRIALYCHQLNITSKVKADVQNISGELIVSGLDSATSLIQAAK 874
V A +S L++A +
Sbjct: 65 VVAPT----------------------------------------ISSPVCQEQLVEAGR 84
Query: 875 NLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNL 915
+ AV V +S A+ V +AT++ QA L
Sbjct: 85 LVAKAVEGCVSASQAATEDGQLLRGV-GAAATAVTQALNEL 124
Score = 26.4 bits (58), Expect = 9.3
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 864 DSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVALDSATSLIQAAKNLMNAVVLTV 923
T +I AA + V + V + L++A + + AV V
Sbjct: 40 GLQTQVIAAATQCALSTSQLVACTKVVAPTISSPV-----CQEQLVEAGRLVAKAVEGCV 94
Query: 924 KSSYVASTKYPRQNQV 939
+S A+ V
Sbjct: 95 SASQAATEDGQLLRGV 110
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 158
Score = 49.0 bits (117), Expect = 3e-07
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 461 NQVAKKSHTAIVDRILLVFSFMETDIPILVLIEAARS-----GNEKEVEKAAENFADHAN 515
+ + A+ + F +T PI +L AA + E+ E+ A NF +HA
Sbjct: 93 KDLKARMQEAMTQEV--SDVFSDTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAA 150
Query: 516 KLVEVAN 522
+L A
Sbjct: 151 RLGATAE 157
Score = 42.4 bits (100), Expect = 5e-05
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 1 METDIPILVLIEAARS-----GNEKEVEKAAENFADHANKLVEVAN 41
+T PI +L AA + E+ E+ A NF +HA +L A
Sbjct: 112 SDTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAARLGATAE 157
>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD
{Escherichia coli [TaxId: 562]}
Length = 329
Score = 31.2 bits (70), Expect = 0.60
Identities = 36/309 (11%), Positives = 86/309 (27%), Gaps = 29/309 (9%)
Query: 143 ILDRTAGAIRGRSARVANVVAAEMDNYEPGIYTERVLEAIKVLREQVMPNFATRV----E 198
I++R ARV V + + +RVL+A + L +Q AT +
Sbjct: 8 IIERCRELALRAPARV---VFPDALD-------QRVLKAAQYLHQQ---GLATPILVANP 54
Query: 199 VAVDALSTTPPKEVDENEFIDASRLVYDGVREIRRAVLMNRTDEELDPEDIELDDQYTTS 258
+ + + +D + ID + R + D + D +
Sbjct: 55 FELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTDPLMFAA 114
Query: 259 EAATMPRSKELGVDEYPDISGITTAREAMRKMTEEDKQKIAQQVEFFRSEKLKFDREVAK 318
+ ++ +TA + Q + + ++
Sbjct: 115 AMVSAGKADVCIAGNLS-----STANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGPALG 169
Query: 319 WDDTGNDIIVLAKHMCMIMMEMTDFTRGRGPLKTTMDVINAAKKISEAGTNLDKLTRQIA 378
+ D A + I + + R + + +++ S G+ +
Sbjct: 170 FADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSF----SSNGSARHPCVANVQ 225
Query: 379 DQCPESSTKKDLLAYLQRIALYCHQLNITSKVKADVQNISGE---LIVSGLDSATSLIQA 435
+ L + + + KA + G+ ++ L++ +
Sbjct: 226 QATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKI 285
Query: 436 AKNLMNAVV 444
A+ L
Sbjct: 286 AQRLGGYRA 294
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
{Trypanosoma brucei [TaxId: 5691]}
Length = 92
Score = 29.0 bits (65), Expect = 0.63
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 290 MTEEDKQKIAQQVEF-FRSEKLKFDR 314
++ E+KQK+ +QVEF F ++ D
Sbjct: 6 LSSENKQKLQKQVEFYFSDVNVQRDI 31
Score = 29.0 bits (65), Expect = 0.63
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 695 MTEEDKQKIAQQVEF-FRSEKLKFDR 719
++ E+KQK+ +QVEF F ++ D
Sbjct: 6 LSSENKQKLQKQVEFYFSDVNVQRDI 31
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 28.3 bits (63), Expect = 3.5
Identities = 20/147 (13%), Positives = 50/147 (34%), Gaps = 29/147 (19%)
Query: 426 LDSATSLIQAAKNLMNAVVLTVKSSYVASTKYPRQNQVAKKSHTAIVDRILLVFSFMETD 485
L+ ++ + +LM A+ L V +S + ++ +
Sbjct: 45 LEVNERILNSCTDLMKAIRLLVTTSTSLQKE-IVESGRGAATQQE--------------- 88
Query: 486 IPILVLIEAARSGNEKE-VEKAAENFADHANKLVEVANLACSMSNNEDGVKMVRYAASSI 544
A++ E + A++ A +LVE A+ + + + + I
Sbjct: 89 -------FYAKNSRWTEGLISASKAVGWGATQLVEAADKVVLHTGKYE---ELIVCSHEI 138
Query: 545 ASLYTQVINAARILAARPRSKVAQENM 571
A+ Q++ A+++ A + +
Sbjct: 139 AASTAQLVAASKVKA--NKHSPHLSRL 163
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 28.2 bits (62), Expect = 5.0
Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 9 VLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNED-GVKMVRYAASSIASLY 67
+L+ + ++ +V + D GV MV +A ++ +
Sbjct: 184 ILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASV 243
Query: 68 TQVINAARILAARPRSKVAQENMDVFKE 95
+ + + + ++ + KE
Sbjct: 244 SAIQQTTKQIYDDQSLVNVEDKIVSVKE 271
Score = 28.2 bits (62), Expect = 5.0
Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 490 VLIEAARSGNEKEVEKAAENFADHANKLVEVANLACSMSNNED-GVKMVRYAASSIASLY 548
+L+ + ++ +V + D GV MV +A ++ +
Sbjct: 184 ILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASV 243
Query: 549 TQVINAARILAARPRSKVAQENMDVFKE 576
+ + + + ++ + KE
Sbjct: 244 SAIQQTTKQIYDDQSLVNVEDKIVSVKE 271
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.128 0.345
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,330,677
Number of extensions: 151341
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 45
Length of query: 994
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 900
Effective length of database: 1,116,976
Effective search space: 1005278400
Effective search space used: 1005278400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)