BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5461
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 213 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 272
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 273 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 332
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 333 VEELKAGDLGAVVGLKE 349
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 240 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 299
Query: 51 GAF 53
G
Sbjct: 300 GTL 302
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 48 IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGD-------- 99
I G PV GS+ KN GVQ L+DA+VD LPSP + P + G+
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDP 305
Query: 100 --SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKE 157
L A AFK++ D + G +TF R+YSG G YN + E++ RLL A+ +E
Sbjct: 306 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREE 365
Query: 158 VNEIQCGNIAAVTGLKR 174
V E++ G++ AV GLK
Sbjct: 366 VEELKAGDLGAVVGLKE 382
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD----------SLCARAFKVVHDKHRGAVTFFRIYS 50
+DA+VD LPSP + P + G+ L A AFK++ D + G +TF R+YS
Sbjct: 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYS 332
Query: 51 GAF 53
G
Sbjct: 333 GTL 335
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 59 PVLCGSSYKNIGVQKLMDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAF 106
PVLCG+++KN GVQ ++DA++D LPSP + P + DS A AF
Sbjct: 255 PVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF 314
Query: 107 KVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNI 166
KV+ D + G +TFFR+YSG G N + E++ RLL A+ +E++ + G+I
Sbjct: 315 KVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 167 AAVTGLK 173
AA GLK
Sbjct: 375 AAAVGLK 381
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 1 MDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAFKVVHDKHRGAVTFFRI 48
+DA++D LPSP + P + DS A AFKV+ D + G +TFFR+
Sbjct: 271 LDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRV 330
Query: 49 YSGAF 53
YSG
Sbjct: 331 YSGTM 335
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 59 PVLCGSSYKNIGVQKLMDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAF 106
PVLCG+++KN GVQ ++DA++D LPSP + P + DS A AF
Sbjct: 255 PVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF 314
Query: 107 KVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNI 166
KV+ D + G +TFFR+YSG G N + E++ RLL A+ +E++ + G+I
Sbjct: 315 KVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 167 AAVTGLK 173
AA GLK
Sbjct: 375 AAAVGLK 381
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 1 MDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAFKVVHDKHRGAVTFFRI 48
+DA++D LPSP + P + DS A AFKV+ D + G +TFFR+
Sbjct: 271 LDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRV 330
Query: 49 YSGAF 53
YSG
Sbjct: 331 YSGTM 335
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 59 PVLCGSSYKNIGVQKLMDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAF 106
PVLCG+++KN GVQ ++DA++D LPSP + P + DS A AF
Sbjct: 255 PVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF 314
Query: 107 KVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNI 166
KV+ D + G +TFFR+YSG G N + E++ RLL A+ +E++ + G+I
Sbjct: 315 KVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 167 AAVTGLK 173
AA GLK
Sbjct: 375 AAAVGLK 381
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 1 MDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAFKVVHDKHRGAVTFFRI 48
+DA++D LPSP + P + DS A AFKV+ D + G +TFFR+
Sbjct: 271 LDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRV 330
Query: 49 YSGAF 53
YSG
Sbjct: 331 YSGTM 335
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 59 PVLCGSSYKNIGVQKLMDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAF 106
PVLCG+++KN GVQ ++DA++D LPSP + P + DS A AF
Sbjct: 255 PVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF 314
Query: 107 KVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNI 166
KV+ D + G +TFFR+YSG G N + E++ RLL A+ +E++ + G+I
Sbjct: 315 KVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 167 AAVTGLK 173
AA GLK
Sbjct: 375 AAAVGLK 381
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 1 MDAIVDILPSPTE----------RPALAMFQHFGDS--LCARAFKVVHDKHRGAVTFFRI 48
+DA++D LPSP + P + DS A AFKV+ D + G +TFFR+
Sbjct: 271 LDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRV 330
Query: 49 YSGAF 53
YSG
Sbjct: 331 YSGTM 335
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 12/128 (9%)
Query: 58 VPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMF----------QHFGDS--LCARA 105
VP +CGSS+KN GV ++DA++D LP+PTE PA+ +H D+ + A
Sbjct: 265 VPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLA 324
Query: 106 FKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGN 165
FK+ D G +TF R+YSG G N + E++ R++ A+ +E+ E++ G+
Sbjct: 325 FKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGD 384
Query: 166 IAAVTGLK 173
IAA+ G+K
Sbjct: 385 IAALIGMK 392
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 1 MDAIVDILPSPTERPALAMF----------QHFGDS--LCARAFKVVHDKHRGAVTFFRI 48
+DA++D LP+PTE PA+ +H D+ + AFK+ D G +TF R+
Sbjct: 282 LDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARV 341
Query: 49 YSGAF 53
YSG
Sbjct: 342 YSGVL 346
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 12/126 (9%)
Query: 60 VLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMF----------QHFGDS--LCARAFK 107
V CGS++KN GVQ ++DA++D LPSP + PA+ +H D A AFK
Sbjct: 263 VTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFK 322
Query: 108 VVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIA 167
+ D G +TFFR+YSG G N E+ R++ A+ +E+ E++ G+IA
Sbjct: 323 IATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIA 382
Query: 168 AVTGLK 173
A GLK
Sbjct: 383 AAIGLK 388
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 1 MDAIVDILPSPTERPALAMF----------QHFGDS--LCARAFKVVHDKHRGAVTFFRI 48
+DA++D LPSP + PA+ +H D A AFK+ D G +TFFR+
Sbjct: 278 LDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRV 337
Query: 49 YSG 51
YSG
Sbjct: 338 YSG 340
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%), Gaps = 12/126 (9%)
Query: 60 VLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMF----------QHFGDS--LCARAFK 107
V CGS++KN GVQ ++DA++D LPSP + PA+ +H D A AFK
Sbjct: 264 VTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFK 323
Query: 108 VVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIA 167
+ D G +TFFR+YSG G N E+ R++ A+ +E+ E++ G+IA
Sbjct: 324 IATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIA 383
Query: 168 AVTGLK 173
A GLK
Sbjct: 384 AAIGLK 389
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 1 MDAIVDILPSPTERPALAMF----------QHFGDS--LCARAFKVVHDKHRGAVTFFRI 48
+DA++D LPSP + PA+ +H D A AFK+ D G +TFFR+
Sbjct: 279 LDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRV 338
Query: 49 YSG 51
YSG
Sbjct: 339 YSG 341
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 50 SGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALA-MFQHFGDSLCARAFKV 108
G K P+ GS+ N GV +L+DA V P P R + + + + FK+
Sbjct: 243 EGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKI 302
Query: 109 VHDK---HRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGN 165
+ HR + F RI SG ++KG K Y++ L + QI L A + E G+
Sbjct: 303 QANXDPGHRDRIAFLRIASGQYQKGXKAYHVRLKKEIQINNALTFXAGKRENAEEAWPGD 362
Query: 166 IAAV 169
I +
Sbjct: 363 IIGL 366
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
Query: 59 PVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDS-LCARAFKVVHDKHRGAV 117
PV S + IGV L++ I++ LPSPTER FGD A+ FKV D G V
Sbjct: 249 PVALASGEREIGVLPLLELILEALPSPTER--------FGDGPPLAKVFKVQVDPFMGQV 300
Query: 118 TFFRIYSGAFKKGQKFYNIHLDQSE----QITRLLLAEADDYKEVNEIQCGNIAAV---T 170
+ R+Y G K G QSE ++ L + D EV E + G + V
Sbjct: 301 AYLRLYRGRLKPGDSL------QSEAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAE 354
Query: 171 GLKR 174
GL R
Sbjct: 355 GLHR 358
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGDSL-CARAFKVVHDKHRGAVTFFRIYSGAFK 54
++ I++ LPSPTER FGD A+ FKV D G V + R+Y G K
Sbjct: 265 LELILEALPSPTER--------FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLK 311
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 53 FKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFG-DSLCARAFKV--- 108
K PV GS+ N GV++++D V+ P P RPA G ++ FK+
Sbjct: 264 LKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQAN 323
Query: 109 VHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAA 168
+ HR + F RI SG F +G + + + + + A D V E G+I
Sbjct: 324 MDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIG 383
Query: 169 V 169
+
Sbjct: 384 I 384
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGD-SLCARAFKV---VHDKHRGAVTFFRIYSGAFKKN 56
+D V+ P P RPA G+ + FK+ + HR + F RI SG F +
Sbjct: 286 LDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRG 345
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 58 VPVLCGSSYKNIGVQKLMDAIVDILPSPTERPA-LAMFQHFGDSLCARAFKV---VHDKH 113
PV G++ N GV ++D +V+ P+P R + D FK+ + KH
Sbjct: 252 TPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKH 311
Query: 114 RGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV 169
R V F R+ SG ++KG K + + I+ L A D V E G+I +
Sbjct: 312 RDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL 367
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 1 MDAIVDILPSPTERPA-LAMFQHFGDSLCARAFKV---VHDKHRGAVTFFRIYSGAFKK 55
+D +V+ P+P R + D FK+ + KHR V F R+ SG ++K
Sbjct: 269 LDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEK 327
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 58 VPVLCGSSYKNIGVQKLMDAIVDILPSPTERPA-LAMFQHFGDSLCARAFKV---VHDKH 113
PV G++ N GV ++D +V+ P+P R + D FK+ + KH
Sbjct: 252 TPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKH 311
Query: 114 RGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV 169
R V F R+ SG ++KG K + + I+ L A D V E G+I +
Sbjct: 312 RDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL 367
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 1 MDAIVDILPSPTERPA-LAMFQHFGDSLCARAFKV---VHDKHRGAVTFFRIYSGAFKK 55
+D +V+ P+P R + D FK+ + KHR V F R+ SG ++K
Sbjct: 269 LDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEK 327
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 61 LCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFF 120
+ S+ + IG++++++AIV+ +P P P L A F +D +RGAV F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPPKGDPQ--------KPLKALIFDSYYDPYRGAVAFV 212
Query: 121 RIYSGAFKKGQKFYNIHLDQSEQITRL 147
RI+ G K G K + + ++T +
Sbjct: 213 RIFDGEVKPGDKIMLMSTGKEYEVTEV 239
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPV 60
++AIV+ +P P P L A F +D +RGAV F RI+ G K +
Sbjct: 175 LEAIVNRIPPPKGDPQ--------KPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIM 226
Query: 61 L--CGSSYK--NIGVQ 72
L G Y+ +G Q
Sbjct: 227 LMSTGKEYEVTEVGAQ 242
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 61 LCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFF 120
+ S+ + IG++++++AIV+ +P P P L A F +D +RGAV F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPPKGDPQ--------KPLKALIFDSYYDPYRGAVAFV 212
Query: 121 RIYSGAFKKGQKFYNIHLDQSEQITRL 147
RI+ G K G K + ++T +
Sbjct: 213 RIFDGEVKPGDKIXLXSTGKEYEVTEV 239
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 1 MDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFK 54
++AIV+ +P P P L A F +D +RGAV F RI+ G K
Sbjct: 175 LEAIVNRIPPPKGDPQ--------KPLKALIFDSYYDPYRGAVAFVRIFDGEVK 220
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 59 PVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVT 118
P+ GS+ NIG+ L++ I + S T R LC FK+ + K R +
Sbjct: 214 PLYHGSAKSNIGIDNLIEVITNKFYSSTHRGP--------SELCGNVFKIEYTKKRQRLA 265
Query: 119 FFRIYSGAF 127
+ R+YSG
Sbjct: 266 YIRLYSGVL 274
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 22 HFGDS-LCARAFKVVHDKHRGAVTFFRIYSGAF 53
H G S LC FK+ + K R + + R+YSG
Sbjct: 242 HRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVL 274
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 30/155 (19%)
Query: 52 AFKKNHVPVLCGSSY-------KNIG---VQKLMDAIVDILPSPT---ERPALAMFQHFG 98
+K P++ GS+ +G VQKL+DA+ +P PT E+P L +
Sbjct: 153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVE--- 209
Query: 99 DSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEV 158
V RG V + G KKG + L S+ I ++ +K +
Sbjct: 210 --------SVYSIPGRGTVVTGTLERGILKKGDECE--FLGHSKNIRTVVTGIEMFHKSL 259
Query: 159 NEIQCG-NIAA-VTGLKRERGKDKRTRVIPKPTSV 191
+ + G N+ A V GLKRE +R V+ KP S+
Sbjct: 260 DRAEAGDNLGALVRGLKRE--DLRRGLVMAKPGSI 292
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 30/155 (19%)
Query: 52 AFKKNHVPVLCGSSY-------KNIG---VQKLMDAIVDILPSPT---ERPALAMFQHFG 98
+K P++ GS+ +G VQKL+DA+ +P PT E+P L +
Sbjct: 164 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVE--- 220
Query: 99 DSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEV 158
V RG V + G KKG + L S+ I ++ +K +
Sbjct: 221 --------SVYSIPGRGTVVTGTLERGILKKGDECE--FLGHSKNIRTVVTGIEXFHKSL 270
Query: 159 NEIQCG-NIAA-VTGLKRERGKDKRTRVIPKPTSV 191
+ + G N+ A V GLKRE +R V KP S+
Sbjct: 271 DRAEAGDNLGALVRGLKRE--DLRRGLVXAKPGSI 303
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 5 VDILPSPTERPALAMFQH-FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCG 63
VD + S T+RP L + H F + R +V+ ++ T + S + K + V+ G
Sbjct: 419 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVG 478
Query: 64 SSYKNIGVQKL 74
+ Y +G + L
Sbjct: 479 NCYGFVGNRML 489
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 5 VDILPSPTERPALAMFQH-FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCG 63
VD + S T+RP L + H F + R +V+ ++ T + S + K + V+ G
Sbjct: 434 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVG 493
Query: 64 SSYKNIGVQKL 74
+ Y +G + L
Sbjct: 494 NCYGFVGNRML 504
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 5 VDILPSPTERPALAMFQH-FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCG 63
VD + S T+RP L + H F + R +V+ ++ T + S + K + V+ G
Sbjct: 434 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVG 493
Query: 64 SSYKNIGVQKL 74
+ Y +G + L
Sbjct: 494 NCYGFVGNRML 504
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 5 VDILPSPTERPALAMFQH-FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCG 63
VD + S T+RP L + H F + R +V+ ++ T + S + K + V+ G
Sbjct: 155 VDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVG 214
Query: 64 SSYKNIGVQKL 74
+ Y +G + L
Sbjct: 215 NCYGFVGNRML 225
>pdb|2PJU|A Chain A, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|B Chain B, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|C Chain C, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|D Chain D, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
Length = 225
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 131 QKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTG 171
QK +N+ LDQ IT E D ++NE++ AV G
Sbjct: 125 QKTFNLRLDQRSYIT-----EEDARGQINELKANGTEAVVG 160
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 141 SEQITRLLLAEADDYKEVNEIQCG----NIAAVTGLKRERGKDKRTRVIPKPTSVVQCSA 196
SE+I + L AE DD + +Q G + +RE+G + +R +P CSA
Sbjct: 227 SEEIAQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEEREQGS-RGSRYLPNGVEETICSA 285
Query: 197 RWTLNLE 203
R +N++
Sbjct: 286 RLAVNVD 292
>pdb|2R63|A Chain A, Structural Role Of A Buried Salt Bridge In The 434
Repressor Dna-Binding Domain, Nmr, 20 Structures
Length = 63
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 175 ERGKDKRTRVIPKPTSVVQCSARWTLN 201
E GK KR R +P+ S + S W LN
Sbjct: 35 ENGKTKRPRFLPELASALGVSVDWLLN 61
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 41 GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFG 98
GAV +RI G + P+ G S+ +G+ +A ++ + LAMF FG
Sbjct: 136 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 193
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 41 GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFG 98
GAV +RI G + P+ G S+ +G+ +A ++ + LAMF FG
Sbjct: 136 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
>pdb|1R63|A Chain A, Structural Role Of A Buried Salt Bridge In The 434
Repressor Dna-Binding Domain, Nmr, 20 Structures
Length = 63
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 175 ERGKDKRTRVIPKPTSVVQCSARWTLN 201
E GK KR R +P+ S + S W LN
Sbjct: 35 ENGKTKRPRFLPELASALGVSVDWLLN 61
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 41 GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFG 98
GAV +RI G + P+ G S+ +G+ +A ++ + LAMF FG
Sbjct: 136 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
>pdb|1PRA|A Chain A, Determination Of The Nuclear Magnetic Resonance Solution
Structure Of The Dna-Binding Domain (Residues 1 To 69)
Of The 434 Repressor And Comparison With The X-Ray
Crystal Structure
Length = 69
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 175 ERGKDKRTRVIPKPTSVVQCSARWTLN 201
E GK KR R +P+ S + S W LN
Sbjct: 35 ENGKTKRPRFLPELASALGVSVDWLLN 61
>pdb|2OR1|L Chain L, Recognition Of A Dna Operator By The Repressor Of Phage
434. A View At High Resolution
pdb|2OR1|R Chain R, Recognition Of A Dna Operator By The Repressor Of Phage
434. A View At High Resolution
pdb|1PER|L Chain L, The Complex Between Phage 434 Repression Dna-Binding
Domain And Operator Site Or3: Structural Differences
Between Consensus And Non-Consensus Half-Sites
pdb|1PER|R Chain R, The Complex Between Phage 434 Repression Dna-Binding
Domain And Operator Site Or3: Structural Differences
Between Consensus And Non-Consensus Half-Sites
pdb|1RPE|L Chain L, The Phage 434 Or2R1-69 Complex At 2.5 Angstroms Resolution
pdb|1RPE|R Chain R, The Phage 434 Or2R1-69 Complex At 2.5 Angstroms Resolution
pdb|1R69|A Chain A, Structure Of The Amino-Terminal Domain Of Phage 434
Repressor At 2.0 Angstroms Resolution
Length = 69
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 175 ERGKDKRTRVIPKPTSVVQCSARWTLN 201
E GK KR R +P+ S + S W LN
Sbjct: 35 ENGKTKRPRFLPELASALGVSVDWLLN 61
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 64 SSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIY 123
S+ +GVQ +++ +V R L A D + G V+ RI
Sbjct: 162 SAKTGVGVQDVLERLV--------RDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIK 213
Query: 124 SGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVN--EIQCGNIA 167
+G +KG K + Q+ RL + K+V+ E++CG +
Sbjct: 214 NGTLRKGDKVKVMSTGQTYNADRLGIFTP---KQVDRTELKCGEVG 256
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 64 SSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIY 123
S+ +GVQ +++ +V R L A D + G V+ RI
Sbjct: 162 SAKTGVGVQDVLERLV--------RDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIK 213
Query: 124 SGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVN--EIQCGNIA 167
+G +KG K + Q+ RL + K+V+ E++CG +
Sbjct: 214 NGTLRKGDKVKVMSTGQTYNADRLGIFTP---KQVDRTELKCGEVG 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,266,592
Number of Sequences: 62578
Number of extensions: 250470
Number of successful extensions: 780
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 70
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)