Query psy5461
Match_columns 221
No_of_seqs 158 out of 1597
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 18:11:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xex_A Elongation factor G; GT 100.0 4E-34 1.4E-38 272.3 17.5 193 23-217 221-443 (693)
2 2rdo_7 EF-G, elongation factor 100.0 1.5E-33 5.2E-38 268.7 18.3 174 44-217 248-451 (704)
3 1dar_A EF-G, elongation factor 100.0 1.8E-33 6E-38 267.8 16.5 175 43-217 241-444 (691)
4 4fn5_A EF-G 1, elongation fact 100.0 8.6E-33 2.9E-37 263.8 13.1 176 42-217 249-454 (709)
5 3vqt_A RF-3, peptide chain rel 100.0 6.7E-32 2.3E-36 251.0 16.0 164 51-214 262-447 (548)
6 3tr5_A RF-3, peptide chain rel 100.0 2.6E-31 9E-36 245.9 18.1 168 49-217 242-430 (528)
7 2h5e_A Peptide chain release f 100.0 6.8E-31 2.3E-35 243.3 14.5 167 50-217 244-431 (529)
8 2dy1_A Elongation factor G; tr 100.0 6E-30 2.1E-34 242.6 14.5 164 45-217 235-418 (665)
9 3j25_A Tetracycline resistance 99.9 3.3E-29 1.1E-33 236.6 1.1 162 47-218 202-381 (638)
10 1n0u_A EF-2, elongation factor 99.9 6.8E-26 2.3E-30 219.7 13.4 160 46-216 317-523 (842)
11 2ywe_A GTP-binding protein LEP 99.9 2.3E-24 7.8E-29 201.8 22.0 185 23-217 124-332 (600)
12 3cb4_D GTP-binding protein LEP 99.9 1.9E-23 6.5E-28 195.7 20.3 185 23-217 122-330 (599)
13 1g7s_A Translation initiation 99.7 2.4E-17 8.1E-22 154.4 14.1 127 55-184 189-327 (594)
14 2c78_A Elongation factor TU-A; 99.7 3.9E-16 1.3E-20 139.7 11.8 149 24-184 127-307 (405)
15 1d2e_A Elongation factor TU (E 99.6 9.4E-16 3.2E-20 136.9 10.8 149 24-184 118-289 (397)
16 1jny_A EF-1-alpha, elongation 99.6 1.9E-14 6.4E-19 130.0 11.5 146 26-184 146-316 (435)
17 2elf_A Protein translation elo 99.5 8.4E-15 2.9E-19 129.9 8.0 152 24-183 111-275 (370)
18 1kk1_A EIF2gamma; initiation o 99.5 9.6E-14 3.3E-18 124.3 14.0 149 25-185 138-316 (410)
19 3sjy_A Translation initiation 99.5 8.9E-14 3E-18 124.3 13.1 149 25-185 130-308 (403)
20 3j2k_7 ERF3, eukaryotic polype 99.5 7.2E-14 2.4E-18 126.4 12.0 113 57-184 198-326 (439)
21 3p26_A Elongation factor 1 alp 99.5 9.6E-14 3.3E-18 126.9 13.0 152 25-185 172-362 (483)
22 1s0u_A EIF-2-gamma, translatio 99.5 3E-13 1E-17 121.0 15.2 149 25-185 136-314 (408)
23 3avx_A Elongation factor TS, e 99.5 8.3E-14 2.8E-18 137.5 11.6 149 24-184 411-580 (1289)
24 3mca_A HBS1, elongation factor 99.5 1.9E-13 6.4E-18 128.0 13.4 145 26-184 317-488 (592)
25 3izy_P Translation initiation 99.5 4.7E-14 1.6E-18 130.5 6.0 151 23-184 103-258 (537)
26 3izq_1 HBS1P, elongation facto 99.4 3.3E-13 1.1E-17 126.8 11.6 151 25-184 306-495 (611)
27 1r5b_A Eukaryotic peptide chai 99.4 1.1E-12 3.7E-17 119.6 8.4 114 57-184 225-355 (467)
28 1f60_A Elongation factor EEF1A 99.4 5.3E-12 1.8E-16 114.7 12.6 146 26-184 147-327 (458)
29 1zo1_I IF2, translation initia 99.4 1.5E-12 5E-17 119.6 8.8 149 23-183 102-256 (501)
30 1zun_B Sulfate adenylate trans 99.3 3.8E-12 1.3E-16 114.8 10.7 116 57-185 197-326 (434)
31 1wb1_A Translation elongation 99.2 1.2E-12 4.1E-17 119.7 1.3 148 23-182 124-281 (482)
32 3e1y_E Eukaryotic peptide chai 98.9 5.1E-09 1.7E-13 85.4 8.1 82 97-184 3-88 (204)
33 1xe1_A Hypothetical protein PF 97.7 0.00048 1.7E-08 50.7 10.5 76 100-183 34-113 (116)
34 3vqt_A RF-3, peptide chain rel 97.5 2.2E-05 7.5E-10 72.7 1.2 67 1-68 286-356 (548)
35 4fn5_A EF-G 1, elongation fact 97.3 6.5E-05 2.2E-09 71.5 1.9 61 1-62 282-354 (709)
36 2rdo_7 EF-G, elongation factor 97.2 7.4E-05 2.5E-09 71.1 0.7 63 1-64 279-353 (704)
37 1dar_A EF-G, elongation factor 97.1 0.00011 3.6E-09 69.9 1.5 62 1-63 273-344 (691)
38 2xex_A Elongation factor G; GT 97.1 9.3E-05 3.2E-09 70.3 0.4 62 1-63 271-344 (693)
39 3tr5_A RF-3, peptide chain rel 97.0 0.00021 7.1E-09 65.9 1.8 67 1-68 268-338 (528)
40 1d1n_A Initiation factor 2; be 96.8 0.0029 9.8E-08 45.2 6.3 75 104-182 10-89 (99)
41 1n0u_A EF-2, elongation factor 96.8 8.2E-05 2.8E-09 72.2 -3.0 58 1-58 335-410 (842)
42 3qq5_A Small GTP-binding prote 96.8 8.3E-06 2.9E-10 73.2 -9.3 153 23-184 139-324 (423)
43 2crv_A IF-2MT, translation ini 96.5 0.0089 3E-07 44.2 7.1 75 102-183 15-98 (120)
44 2h5e_A Peptide chain release f 96.3 0.0011 3.9E-08 60.9 1.4 64 1-65 269-336 (529)
45 3j25_A Tetracycline resistance 96.2 0.00095 3.2E-08 62.8 0.6 50 1-58 230-279 (638)
46 1zo1_I IF2, translation initia 95.2 0.083 2.8E-06 48.2 9.3 76 104-183 412-492 (501)
47 3izy_P Translation initiation 94.7 0.28 9.5E-06 45.1 11.4 80 102-182 449-534 (537)
48 2dy1_A Elongation factor G; tr 94.4 0.0028 9.5E-08 59.9 -2.8 51 1-58 265-315 (665)
49 4dhe_A Probable GTP-binding pr 94.2 0.028 9.6E-07 44.4 3.1 65 23-87 143-214 (223)
50 3pqc_A Probable GTP-binding pr 93.9 0.057 1.9E-06 41.3 4.4 61 23-83 132-193 (195)
51 1zj6_A ADP-ribosylation factor 93.4 0.14 4.9E-06 39.0 5.8 62 23-87 116-181 (187)
52 1ky3_A GTP-binding protein YPT 93.3 0.084 2.9E-06 39.7 4.4 60 23-82 117-176 (182)
53 1mh1_A RAC1; GTP-binding, GTPa 93.2 0.097 3.3E-06 39.6 4.6 64 24-87 109-183 (186)
54 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.11 3.9E-06 38.9 5.0 59 23-83 115-173 (177)
55 3bwd_D RAC-like GTP-binding pr 93.1 0.051 1.8E-06 41.1 2.8 62 24-85 112-182 (182)
56 1c1y_A RAS-related protein RAP 93.0 0.12 4E-06 38.3 4.7 59 23-82 107-165 (167)
57 2efe_B Small GTP-binding prote 93.0 0.14 4.7E-06 38.6 5.2 60 24-85 117-176 (181)
58 1svi_A GTP-binding protein YSX 92.9 0.12 4.1E-06 39.6 4.8 61 23-83 133-194 (195)
59 2dyk_A GTP-binding protein; GT 92.8 0.16 5.4E-06 37.4 5.1 55 23-83 107-161 (161)
60 1zd9_A ADP-ribosylation factor 92.7 0.2 6.8E-06 38.4 5.8 62 23-84 123-185 (188)
61 3q72_A GTP-binding protein RAD 92.7 0.099 3.4E-06 38.8 3.9 58 23-82 105-162 (166)
62 1r8s_A ADP-ribosylation factor 92.7 0.23 7.9E-06 36.6 6.0 57 24-83 101-161 (164)
63 1r2q_A RAS-related protein RAB 92.7 0.13 4.6E-06 38.0 4.6 58 24-83 111-168 (170)
64 3t1o_A Gliding protein MGLA; G 92.6 0.13 4.4E-06 39.2 4.6 57 23-82 134-190 (198)
65 2erx_A GTP-binding protein DI- 92.6 0.14 4.7E-06 38.0 4.6 60 24-85 109-168 (172)
66 1vg8_A RAS-related protein RAB 92.6 0.13 4.4E-06 39.8 4.6 58 24-83 117-174 (207)
67 1z0j_A RAB-22, RAS-related pro 92.6 0.16 5.4E-06 37.7 4.9 59 24-84 111-169 (170)
68 2fg5_A RAB-22B, RAS-related pr 92.5 0.21 7.1E-06 38.4 5.7 60 24-85 128-187 (192)
69 1g7s_A Translation initiation 92.5 0.74 2.5E-05 42.8 10.2 67 115-185 479-550 (594)
70 1m2o_B GTP-binding protein SAR 92.3 0.25 8.5E-06 38.1 5.8 57 23-82 123-190 (190)
71 1upt_A ARL1, ADP-ribosylation 91.9 0.18 6.3E-06 37.4 4.5 61 23-83 107-168 (171)
72 1f6b_A SAR1; gtpases, N-termin 91.9 0.28 9.6E-06 38.1 5.8 57 23-82 125-197 (198)
73 2il1_A RAB12; G-protein, GDP, 91.8 0.2 6.9E-06 38.6 4.8 59 23-82 130-188 (192)
74 2atx_A Small GTP binding prote 91.8 0.13 4.3E-06 39.6 3.6 61 24-84 122-193 (194)
75 2h57_A ADP-ribosylation factor 91.8 0.39 1.3E-05 36.6 6.4 58 23-83 125-186 (190)
76 2h17_A ADP-ribosylation factor 91.7 0.25 8.5E-06 37.5 5.2 56 23-81 121-180 (181)
77 3iev_A GTP-binding protein ERA 91.6 0.28 9.4E-06 41.5 5.8 61 23-84 121-182 (308)
78 4gzl_A RAS-related C3 botulinu 91.6 0.17 5.9E-06 39.5 4.2 59 24-82 134-203 (204)
79 1ek0_A Protein (GTP-binding pr 91.5 0.19 6.5E-06 37.1 4.2 60 23-83 107-168 (170)
80 2y8e_A RAB-protein 6, GH09086P 91.3 0.19 6.5E-06 37.5 4.0 60 23-84 118-177 (179)
81 4dsu_A GTPase KRAS, isoform 2B 91.2 0.24 8.3E-06 37.4 4.6 58 23-83 108-165 (189)
82 3q85_A GTP-binding protein REM 91.1 0.2 6.9E-06 37.2 4.0 57 24-82 109-165 (169)
83 3tw8_B RAS-related protein RAB 91.0 0.15 5.1E-06 38.2 3.2 58 24-83 113-170 (181)
84 3clv_A RAB5 protein, putative; 91.0 0.2 6.9E-06 38.1 4.0 56 24-82 147-202 (208)
85 2b6h_A ADP-ribosylation factor 91.0 0.43 1.5E-05 36.7 5.9 57 24-83 130-190 (192)
86 2hup_A RAS-related protein RAB 90.9 0.25 8.6E-06 38.4 4.6 61 23-84 133-193 (201)
87 1moz_A ARL1, ADP-ribosylation 90.9 0.17 5.7E-06 38.2 3.4 57 23-82 118-178 (183)
88 1kao_A RAP2A; GTP-binding prot 90.9 0.12 4.2E-06 38.0 2.6 58 23-82 107-164 (167)
89 4bas_A ADP-ribosylation factor 90.9 0.32 1.1E-05 37.1 5.1 61 24-84 127-189 (199)
90 2iwr_A Centaurin gamma 1; ANK 90.8 0.26 8.9E-06 37.0 4.4 59 24-82 108-167 (178)
91 3tkl_A RAS-related protein RAB 90.7 0.2 6.9E-06 38.2 3.7 58 24-83 121-178 (196)
92 3dz8_A RAS-related protein RAB 90.7 0.17 5.9E-06 38.8 3.3 58 23-82 127-184 (191)
93 1fzq_A ADP-ribosylation factor 90.7 0.43 1.5E-05 36.3 5.6 59 23-84 116-178 (181)
94 2nzj_A GTP-binding protein REM 90.7 0.2 6.9E-06 37.3 3.6 57 24-82 111-167 (175)
95 3ihw_A Centg3; RAS, centaurin, 90.6 0.27 9.2E-06 37.7 4.4 60 23-82 118-178 (184)
96 3o47_A ADP-ribosylation factor 90.6 0.28 9.5E-06 41.9 4.9 60 24-83 266-326 (329)
97 2x77_A ADP-ribosylation factor 90.5 0.31 1.1E-05 37.1 4.6 60 24-83 123-183 (189)
98 2fn4_A P23, RAS-related protei 90.5 0.22 7.4E-06 37.3 3.7 59 23-83 113-171 (181)
99 1z08_A RAS-related protein RAB 90.5 0.2 6.8E-06 37.2 3.4 57 24-82 111-167 (170)
100 2a9k_A RAS-related protein RAL 90.4 0.34 1.2E-05 36.4 4.8 57 24-82 123-179 (187)
101 1ksh_A ARF-like protein 2; sma 90.3 0.29 9.9E-06 37.1 4.3 58 23-83 118-179 (186)
102 4djt_A GTP-binding nuclear pro 90.0 0.22 7.6E-06 38.9 3.5 60 24-85 117-176 (218)
103 3reg_A RHO-like small GTPase; 90.0 0.23 7.9E-06 38.1 3.5 61 24-84 127-188 (194)
104 2gf9_A RAS-related protein RAB 89.9 0.18 6.2E-06 38.5 2.9 58 24-83 127-184 (189)
105 1u8z_A RAS-related protein RAL 89.9 0.24 8.3E-06 36.4 3.5 57 24-82 109-165 (168)
106 3lvq_E ARF-GAP with SH3 domain 89.8 0.36 1.2E-05 43.2 5.2 59 23-84 422-484 (497)
107 2gf0_A GTP-binding protein DI- 89.8 0.49 1.7E-05 36.0 5.3 59 24-85 114-172 (199)
108 4he6_A Peptidase family U32; u 89.8 1.8 6.2E-05 29.6 7.7 76 99-181 6-85 (89)
109 1g16_A RAS-related protein SEC 89.8 0.37 1.3E-05 35.5 4.5 58 23-83 107-164 (170)
110 1x3s_A RAS-related protein RAB 89.8 0.43 1.5E-05 36.2 5.0 58 24-84 121-178 (195)
111 2ce2_X GTPase HRAS; signaling 89.7 0.39 1.3E-05 35.0 4.5 56 24-82 108-163 (166)
112 3kkq_A RAS-related protein M-R 89.7 0.34 1.2E-05 36.5 4.2 58 23-82 122-180 (183)
113 2g6b_A RAS-related protein RAB 89.7 0.27 9.2E-06 36.9 3.6 59 23-83 115-173 (180)
114 3t5g_A GTP-binding protein RHE 89.6 0.28 9.4E-06 37.0 3.6 61 23-85 110-170 (181)
115 2q3h_A RAS homolog gene family 89.5 0.4 1.4E-05 36.9 4.6 62 24-85 124-196 (201)
116 2fv8_A H6, RHO-related GTP-bin 89.5 0.34 1.2E-05 37.7 4.2 62 24-85 129-201 (207)
117 3con_A GTPase NRAS; structural 89.5 0.42 1.5E-05 36.3 4.7 57 24-83 126-182 (190)
118 1z0f_A RAB14, member RAS oncog 89.4 0.31 1.1E-05 36.3 3.7 58 23-82 119-176 (179)
119 3i8s_A Ferrous iron transport 89.3 0.29 9.9E-06 40.6 3.8 59 23-85 111-170 (274)
120 2bov_A RAla, RAS-related prote 89.2 0.38 1.3E-05 36.9 4.2 58 24-83 119-176 (206)
121 2hxs_A RAB-26, RAS-related pro 89.1 0.25 8.6E-06 37.0 3.1 60 24-85 114-174 (178)
122 2gco_A H9, RHO-related GTP-bin 89.0 0.42 1.4E-05 37.0 4.4 58 24-81 129-197 (201)
123 2bcg_Y Protein YP2, GTP-bindin 88.8 0.37 1.3E-05 37.3 3.9 60 23-84 112-171 (206)
124 3bc1_A RAS-related protein RAB 88.7 0.31 1.1E-05 36.8 3.4 58 23-82 126-183 (195)
125 3l0i_B RAS-related protein RAB 88.5 0.14 4.8E-06 39.7 1.3 58 24-83 138-195 (199)
126 2oil_A CATX-8, RAS-related pro 88.4 0.36 1.2E-05 36.9 3.5 58 23-82 129-186 (193)
127 2j1l_A RHO-related GTP-binding 88.3 0.47 1.6E-05 37.2 4.3 60 24-83 138-208 (214)
128 3oes_A GTPase rhebl1; small GT 88.3 0.3 1E-05 37.8 3.0 60 24-85 129-188 (201)
129 1zbd_A Rabphilin-3A; G protein 88.3 0.34 1.1E-05 37.4 3.4 58 23-82 112-169 (203)
130 2qu8_A Putative nucleolar GTP- 88.3 0.53 1.8E-05 37.3 4.6 59 24-83 142-204 (228)
131 2lkc_A Translation initiation 88.1 0.56 1.9E-05 35.0 4.4 60 23-82 106-169 (178)
132 2fu5_C RAS-related protein RAB 88.1 0.37 1.3E-05 36.3 3.4 59 23-83 112-170 (183)
133 2a5j_A RAS-related protein RAB 87.9 0.36 1.2E-05 36.9 3.3 58 23-82 125-182 (191)
134 2bme_A RAB4A, RAS-related prot 87.7 0.64 2.2E-05 35.0 4.6 59 23-83 114-172 (186)
135 1ega_A Protein (GTP-binding pr 87.7 0.91 3.1E-05 38.1 5.9 60 23-84 115-175 (301)
136 1z2a_A RAS-related protein RAB 87.7 0.34 1.2E-05 35.7 2.9 57 24-82 109-165 (168)
137 2f7s_A C25KG, RAS-related prot 87.6 0.41 1.4E-05 37.3 3.5 59 23-83 140-198 (217)
138 1wf3_A GTP-binding protein; GT 87.3 0.95 3.3E-05 38.1 5.8 57 24-84 117-173 (301)
139 2o52_A RAS-related protein RAB 87.2 0.62 2.1E-05 36.0 4.3 59 23-83 129-187 (200)
140 2wkq_A NPH1-1, RAS-related C3 87.1 0.42 1.4E-05 39.8 3.5 62 24-85 259-331 (332)
141 3p32_A Probable GTPase RV1496/ 86.9 0.2 6.8E-06 43.2 1.4 60 25-84 218-284 (355)
142 2j0v_A RAC-like GTP-binding pr 86.8 0.31 1.1E-05 37.9 2.3 64 24-87 113-183 (212)
143 3a1s_A Iron(II) transport prot 86.7 0.42 1.4E-05 39.3 3.2 58 22-83 108-166 (258)
144 3cph_A RAS-related protein SEC 86.4 0.64 2.2E-05 35.9 4.0 57 24-83 125-181 (213)
145 1z06_A RAS-related protein RAB 86.3 0.67 2.3E-05 35.2 4.0 59 23-83 126-187 (189)
146 3c5c_A RAS-like protein 12; GD 86.2 0.78 2.7E-05 35.0 4.4 58 23-82 126-184 (187)
147 2gj8_A MNME, tRNA modification 86.2 0.5 1.7E-05 35.7 3.2 53 24-85 115-167 (172)
148 3q3j_B RHO-related GTP-binding 86.1 0.75 2.6E-05 36.1 4.3 62 24-85 131-204 (214)
149 2ew1_A RAS-related protein RAB 85.8 0.5 1.7E-05 36.9 3.1 58 24-83 131-188 (201)
150 3th5_A RAS-related C3 botulinu 85.9 0.15 5.3E-06 39.5 0.0 58 24-81 134-202 (204)
151 3cb4_D GTP-binding protein LEP 85.6 0.21 7.1E-06 46.6 0.8 54 1-62 173-226 (599)
152 3iby_A Ferrous iron transport 85.5 0.72 2.5E-05 37.8 4.0 56 22-81 108-164 (256)
153 4dcu_A GTP-binding protein ENG 85.4 0.73 2.5E-05 41.0 4.3 61 23-84 305-369 (456)
154 2atv_A RERG, RAS-like estrogen 85.3 0.65 2.2E-05 35.6 3.5 58 23-82 131-189 (196)
155 1lnz_A SPO0B-associated GTP-bi 85.0 0.68 2.3E-05 39.9 3.8 59 23-85 273-331 (342)
156 2ywe_A GTP-binding protein LEP 85.0 0.26 8.9E-06 45.9 1.2 55 1-64 175-229 (600)
157 2hjg_A GTP-binding protein ENG 84.8 0.95 3.3E-05 40.0 4.7 60 23-83 285-348 (436)
158 2p5s_A RAS and EF-hand domain 84.7 0.7 2.4E-05 35.5 3.4 59 24-83 133-196 (199)
159 2g3y_A GTP-binding protein GEM 84.7 0.72 2.5E-05 36.6 3.6 57 24-82 145-201 (211)
160 3cpj_B GTP-binding protein YPT 84.5 0.63 2.2E-05 36.6 3.1 59 24-84 118-176 (223)
161 4dkx_A RAS-related protein RAB 84.3 0.93 3.2E-05 36.2 4.1 60 23-84 117-176 (216)
162 1mky_A Probable GTP-binding pr 84.3 1.3 4.3E-05 39.2 5.3 61 23-84 291-355 (439)
163 3cbq_A GTP-binding protein REM 84.2 0.92 3.1E-05 35.0 3.9 61 23-85 129-189 (195)
164 2cxx_A Probable GTP-binding pr 83.7 0.89 3.1E-05 34.2 3.6 61 23-84 121-184 (190)
165 3b1v_A Ferrous iron uptake tra 83.0 1.3 4.6E-05 36.6 4.7 58 23-84 106-164 (272)
166 2hf9_A Probable hydrogenase ni 82.8 0.74 2.5E-05 36.1 2.9 54 28-82 168-222 (226)
167 1m7b_A RND3/RHOE small GTP-bin 82.7 1.2 4.1E-05 33.6 4.0 58 24-81 111-180 (184)
168 1gwn_A RHO-related GTP-binding 82.3 1.3 4.3E-05 34.6 4.1 58 24-81 132-201 (205)
169 2yc2_C IFT27, small RAB-relate 82.1 0.85 2.9E-05 34.9 2.9 60 23-83 131-191 (208)
170 2cjw_A GTP-binding protein GEM 82.0 1.3 4.4E-05 34.1 4.0 57 24-82 114-170 (192)
171 3e3x_A BIPA; MCSG,PSI2, struct 82.0 0.86 2.9E-05 39.3 3.1 27 192-218 53-79 (332)
172 2wsm_A Hydrogenase expression/ 81.5 0.93 3.2E-05 35.4 3.0 59 25-84 155-214 (221)
173 2hjg_A GTP-binding protein ENG 80.3 1.5 5.2E-05 38.7 4.3 56 23-84 110-165 (436)
174 3gee_A MNME, tRNA modification 80.2 1.3 4.5E-05 39.9 3.8 57 24-85 343-400 (476)
175 3c5h_A Glucocorticoid receptor 80.1 1.7 5.9E-05 35.2 4.3 57 23-82 197-253 (255)
176 3gj0_A GTP-binding nuclear pro 78.3 1.2 4E-05 34.9 2.6 57 24-84 119-175 (221)
177 2wji_A Ferrous iron transport 78.2 1.2 4.2E-05 33.0 2.6 56 23-82 107-163 (165)
178 3h2y_A GTPase family protein; 78.0 2.8 9.7E-05 36.2 5.2 60 24-83 96-159 (368)
179 2e87_A Hypothetical protein PH 76.5 2.2 7.5E-05 36.5 4.0 56 24-83 280-335 (357)
180 3dpu_A RAB family protein; roc 76.1 1.5 5.3E-05 39.7 3.1 61 24-86 150-210 (535)
181 1xzp_A Probable tRNA modificat 75.8 2.8 9.4E-05 37.8 4.6 55 24-83 350-404 (482)
182 1mky_A Probable GTP-binding pr 75.7 1.6 5.4E-05 38.6 2.9 57 24-84 110-166 (439)
183 3ec1_A YQEH GTPase; atnos1, at 75.5 4 0.00014 35.2 5.5 60 24-83 98-161 (369)
184 2zej_A Dardarin, leucine-rich 74.5 3.1 0.00011 31.3 4.1 61 24-85 112-179 (184)
185 2wjg_A FEOB, ferrous iron tran 73.4 1.1 3.9E-05 33.7 1.2 59 23-85 111-170 (188)
186 2p67_A LAO/AO transport system 73.1 1.4 4.9E-05 37.5 2.0 27 57-83 234-260 (341)
187 3llu_A RAS-related GTP-binding 72.9 2.7 9.3E-05 32.0 3.4 59 23-82 128-195 (196)
188 3k53_A Ferrous iron transport 71.1 2.6 9E-05 34.3 3.1 56 25-84 110-166 (271)
189 1udx_A The GTP-binding protein 68.6 4.6 0.00016 35.7 4.2 57 24-84 269-325 (416)
190 3geh_A MNME, tRNA modification 67.2 3 0.0001 37.3 2.8 55 25-85 331-385 (462)
191 2fh5_B SR-beta, signal recogni 67.2 7.4 0.00025 29.8 4.8 25 57-81 183-213 (214)
192 2yv5_A YJEQ protein; hydrolase 66.8 4 0.00014 34.2 3.3 55 23-79 109-164 (302)
193 2aka_B Dynamin-1; fusion prote 66.5 2.6 9E-05 34.4 2.1 58 23-81 191-250 (299)
194 3t5d_A Septin-7; GTP-binding p 65.8 1.6 5.6E-05 35.7 0.7 61 24-85 144-205 (274)
195 4dcu_A GTP-binding protein ENG 64.9 6 0.00021 35.0 4.3 56 23-84 130-185 (456)
196 1yrb_A ATP(GTP)binding protein 62.9 2.6 9E-05 33.7 1.4 26 58-83 231-256 (262)
197 2www_A Methylmalonic aciduria 60.9 3.5 0.00012 35.3 1.9 27 57-83 252-278 (349)
198 1oix_A RAS-related protein RAB 60.5 8.1 0.00028 29.3 3.8 56 24-81 134-189 (191)
199 1u0l_A Probable GTPase ENGC; p 58.1 7.7 0.00026 32.3 3.6 54 23-79 114-168 (301)
200 2f9l_A RAB11B, member RAS onco 57.3 10 0.00035 28.7 4.0 58 24-83 110-167 (199)
201 2qtf_A Protein HFLX, GTP-bindi 55.8 7.1 0.00024 33.6 3.0 29 58-86 328-356 (364)
202 1cip_A Protein (guanine nucleo 52.8 6.2 0.00021 34.0 2.1 59 24-82 260-342 (353)
203 1pui_A ENGB, probable GTP-bind 52.2 21 0.0007 27.0 5.0 28 57-84 172-199 (210)
204 1jwy_B Dynamin A GTPase domain 52.0 7.2 0.00024 32.1 2.3 61 23-84 197-262 (315)
205 2qm8_A GTPase/ATPase; G protei 49.6 9.1 0.00031 32.5 2.7 27 57-83 234-260 (337)
206 2qag_A Septin-2, protein NEDD5 47.0 6.9 0.00024 33.6 1.5 62 23-86 173-239 (361)
207 1puj_A YLQF, conserved hypothe 44.3 14 0.00048 30.5 2.9 56 24-83 50-105 (282)
208 1zcb_A G alpha I/13; GTP-bindi 43.0 13 0.00044 32.0 2.6 26 57-82 326-351 (362)
209 3l82_B F-box only protein 4; T 42.6 48 0.0016 26.8 5.7 57 24-83 162-222 (227)
210 3zvr_A Dynamin-1; hydrolase, D 35.4 14 0.00047 35.4 1.6 56 23-80 216-274 (772)
211 2x2e_A Dynamin-1; nitration, h 34.1 10 0.00035 32.2 0.5 57 23-80 196-254 (353)
212 3cnl_A YLQF, putative uncharac 31.5 31 0.0011 28.0 3.1 52 24-81 46-98 (262)
213 3iz5_B 60S ribosomal protein L 31.3 93 0.0032 25.6 5.8 28 99-126 39-67 (261)
214 2c78_A Elongation factor TU-A; 29.6 18 0.0006 31.3 1.2 56 2-65 204-259 (405)
215 3r7w_A Gtpase1, GTP-binding pr 29.5 53 0.0018 27.0 4.2 59 23-82 114-179 (307)
216 4a17_A RPL8; eukaryotic riboso 29.1 1.2E+02 0.004 25.0 6.1 26 100-125 41-67 (264)
217 2rcn_A Probable GTPase ENGC; Y 28.4 58 0.002 28.0 4.3 53 23-78 159-213 (358)
218 1d2e_A Elongation factor TU (E 28.4 17 0.00058 31.4 0.9 55 2-64 187-241 (397)
219 1giy_D 50S ribosomal protein L 28.0 1.2E+02 0.0042 23.3 5.7 26 100-125 13-39 (178)
220 2xtp_A GTPase IMAP family memb 27.7 13 0.00043 29.7 -0.0 24 61-84 185-208 (260)
221 3l2o_B F-box only protein 4; s 26.7 1.2E+02 0.0041 25.6 5.9 57 24-83 247-307 (312)
222 1rl2_A Protein (ribosomal prot 26.7 94 0.0032 22.9 4.7 27 99-125 12-39 (137)
223 3j21_B 50S ribosomal protein L 26.7 2E+02 0.0067 23.3 6.9 25 98-122 38-63 (239)
224 1wxq_A GTP-binding protein; st 23.8 8.5 0.00029 33.6 -1.9 57 24-84 214-271 (397)
225 1vq8_A 50S ribosomal protein L 21.2 2.5E+02 0.0085 22.7 6.5 28 98-125 36-64 (240)
No 1
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4e-34 Score=272.35 Aligned_cols=193 Identities=27% Similarity=0.406 Sum_probs=162.6
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccc-----------
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPAL----------- 91 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~----------- 91 (221)
.|+.+...++. .+....+.....+++++.++..+|||+|||++|.|+++|||+|++++|+|.+++..
T Consensus 221 ~dd~l~e~~l~--~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~ 298 (693)
T 2xex_A 221 TSDELMEKYLG--DEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEE 298 (693)
T ss_dssp TCHHHHHHHHT--TCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEE
T ss_pred CCHHHHHHHhc--CCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccc
Confidence 34455555444 12222333455677788888999999999999999999999999999999875331
Q ss_pred -cccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEc
Q psy5461 92 -AMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVT 170 (221)
Q Consensus 92 -~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~ 170 (221)
.+.|++++||+|+|||+.+|+++|+++|+|||||+|++||+|++.+++++++|++|+.++|+++++++++.||||+++.
T Consensus 299 ~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 378 (693)
T 2xex_A 299 VIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAV 378 (693)
T ss_dssp EEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEE
T ss_pred eeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEe
Confidence 2356778999999999999999999999999999999999999999898999999999999999999999999999999
Q ss_pred CCCCCccCcEEecCC--------CCCCCce----------ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 171 GLKRERGKDKRTRVI--------PKPTSVV----------QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 171 gl~~~~~Gdtl~~~~--------~~p~~~v----------~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
|++++++||||++.. ..|.|++ |.++|.+||++|+++||++++.+|.
T Consensus 379 gl~~~~~GdTl~~~~~~~~~~~~~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~ 443 (693)
T 2xex_A 379 GLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDE 443 (693)
T ss_dssp SCSSCCTTCEEEETTCCEECCCCSSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC--
T ss_pred CcccCccCCEEecCCCccccCCcCCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcC
Confidence 999999999999752 1233666 7899999999999999999999864
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.5e-33 Score=268.73 Aligned_cols=174 Identities=28% Similarity=0.427 Sum_probs=155.0
Q ss_pred hHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccc------------cccCCCCCCcEEEEEEEeec
Q psy5461 44 TFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPAL------------AMFQHFGDSLCARAFKVVHD 111 (221)
Q Consensus 44 ~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~------------~~~~~~~~~~~~~Vfk~~~d 111 (221)
....+++++.++..+|||+|||++|.||++|||+|++++|+|.+++.. .+.|++++||+|+|||+.+|
T Consensus 248 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d 327 (704)
T 2rdo_7 248 IKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD 327 (704)
T ss_pred HHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEc
Confidence 345667778888999999999999999999999999999999875321 23456789999999999999
Q ss_pred CCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCC------
Q psy5461 112 KHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVI------ 185 (221)
Q Consensus 112 ~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~------ 185 (221)
+++|+++|+|||||+|++||+|++.+.+++++|++|+.++|+++++++++.||||+++.|++++++||||++..
T Consensus 328 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~l~ 407 (704)
T 2rdo_7 328 PFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILE 407 (704)
T ss_pred CCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcccccC
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999752
Q ss_pred --CCCCCce----------ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 186 --PKPTSVV----------QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 186 --~~p~~~v----------~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
+.|.|++ |.++|.+||++|+++||++++.+|.
T Consensus 408 ~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~ 451 (704)
T 2rdo_7 408 RMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDE 451 (704)
T ss_pred CCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcC
Confidence 1133555 7899999999999999999999865
No 3
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.8e-33 Score=267.84 Aligned_cols=175 Identities=32% Similarity=0.480 Sum_probs=140.2
Q ss_pred chHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccc----------cccCCCCCCcEEEEEEEeecC
Q psy5461 43 VTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPAL----------AMFQHFGDSLCARAFKVVHDK 112 (221)
Q Consensus 43 l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~----------~~~~~~~~~~~~~Vfk~~~d~ 112 (221)
.....+++++.++..+|||+|||++|.|+++|||+|++++|+|.+++.. .+.|++++||+|+|||+.+|+
T Consensus 241 ~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~ 320 (691)
T 1dar_A 241 ELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADP 320 (691)
T ss_dssp HHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEET
T ss_pred HHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcC
Confidence 3455677778888999999999999999999999999999999886432 245677899999999999999
Q ss_pred CCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCCCC-----
Q psy5461 113 HRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVIPK----- 187 (221)
Q Consensus 113 ~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~----- 187 (221)
++|+++|+|||||+|++||+|++.+++++++|++|+.++|+++++++++.||||+++.|++++++||||++...+
T Consensus 321 ~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~ 400 (691)
T 1dar_A 321 YVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILE 400 (691)
T ss_dssp TTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC
T ss_pred CCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccC
Confidence 999999999999999999999999988899999999999999999999999999999999999999999974211
Q ss_pred ----CCCce----------ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 188 ----PTSVV----------QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 188 ----p~~~v----------~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
|.|++ |.++|.+||++|+++||++++.+|.
T Consensus 401 ~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~ 444 (691)
T 1dar_A 401 SIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHP 444 (691)
T ss_dssp --------------------------------CCCCSCEEEC--
T ss_pred CCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcC
Confidence 22444 7899999999999999999999864
No 4
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.98 E-value=8.6e-33 Score=263.83 Aligned_cols=176 Identities=28% Similarity=0.442 Sum_probs=157.1
Q ss_pred cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCccccc------------ccCCCCCCcEEEEEEEe
Q psy5461 42 AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALA------------MFQHFGDSLCARAFKVV 109 (221)
Q Consensus 42 ~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~------------~~~~~~~~~~~~Vfk~~ 109 (221)
......++..+..+..+|++++||.++.|+..|||+|++++|+|.+++... ..|++++||+++|||+.
T Consensus 249 ~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~ 328 (709)
T 4fn5_A 249 AEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIA 328 (709)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECC
T ss_pred HHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEee
Confidence 334566677788889999999999999999999999999999998876431 34788899999999999
Q ss_pred ecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCCC---
Q psy5461 110 HDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVIP--- 186 (221)
Q Consensus 110 ~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~--- 186 (221)
+|+++|+++|+|||||+|++||+|++.++++++++++++.++|+++++++++.|||||+|.|++++.+||||++...
T Consensus 329 ~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~~~ 408 (709)
T 4fn5_A 329 TDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPII 408 (709)
T ss_dssp CBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSCCB
T ss_pred cccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997511
Q ss_pred -----CCCCce----------ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 187 -----KPTSVV----------QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 187 -----~p~~~v----------~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
-|.|++ |.++|.+||++|+++||++++.++.
T Consensus 409 ~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~e 454 (709)
T 4fn5_A 409 LERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDE 454 (709)
T ss_dssp CC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEET
T ss_pred CCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEec
Confidence 133555 8899999999999999999998754
No 5
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.98 E-value=6.7e-32 Score=250.96 Aligned_cols=164 Identities=21% Similarity=0.298 Sum_probs=139.5
Q ss_pred ccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccc-cCCCCCCcEEEEEEEeec---CCCceEEEEEEEceE
Q psy5461 51 GAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAM-FQHFGDSLCARAFKVVHD---KHRGAVTFFRIYSGA 126 (221)
Q Consensus 51 ~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~-~~~~~~~~~~~Vfk~~~d---~~~G~i~~~RV~sG~ 126 (221)
.++++..+|||||||++|.||++|||+|++++|+|.+++.... ....++||.|+|||+..+ +++|+++|+|||||+
T Consensus 262 ~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~ 341 (548)
T 3vqt_A 262 RYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGT 341 (548)
T ss_dssp HHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESC
T ss_pred HHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecce
Confidence 4567789999999999999999999999999999987654321 223467999999999887 899999999999999
Q ss_pred EcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCC-C-------CCCCce------
Q psy5461 127 FKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVI-P-------KPTSVV------ 192 (221)
Q Consensus 127 L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~-~-------~p~~~v------ 192 (221)
|++|++|++.+++++++++++++++|.++++++++.|||||+|.|++++++|||||+.. + .|.|++
T Consensus 342 l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i~~~~P~~~~av~p 421 (548)
T 3vqt_A 342 FTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRL 421 (548)
T ss_dssp EETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCCEEECCSEEEEEEE
T ss_pred ecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCCCCCCCcceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999752 1 122444
Q ss_pred ----ehHHHHHHHHHHhhcCCceEEE
Q psy5461 193 ----QCSARWTLNLEVGASSPIISKS 214 (221)
Q Consensus 193 ----~~~~l~~~L~~L~~~Dp~l~~~ 214 (221)
|.++|.++|++|+++||+..++
T Consensus 422 ~~~~d~~kl~~~L~~L~eed~~~v~~ 447 (548)
T 3vqt_A 422 KNPLKAKQLQKGLEQLAEEGAVQLFR 447 (548)
T ss_dssp SCGGGHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCchhHHHHHHHHHHhhhcCceeEEE
Confidence 7799999999999999975543
No 6
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.97 E-value=2.6e-31 Score=245.91 Aligned_cols=168 Identities=24% Similarity=0.311 Sum_probs=143.4
Q ss_pred hhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCC-CCCCcEEEEEEEee--cC-CCceEEEEEEEc
Q psy5461 49 YSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQH-FGDSLCARAFKVVH--DK-HRGAVTFFRIYS 124 (221)
Q Consensus 49 ~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~-~~~~~~~~Vfk~~~--d~-~~G~i~~~RV~s 124 (221)
++++.++..+|||+|||++|.||++|||+|++++|+|.+......... .++||+|+|||+.+ |+ ++|+++|+||||
T Consensus 242 ~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~s 321 (528)
T 3tr5_A 242 REGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIAS 321 (528)
T ss_dssp HHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEE
T ss_pred HHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEec
Confidence 445566778899999999999999999999999999987644322222 25899999999986 88 999999999999
Q ss_pred eEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCCC-------CCCCce-----
Q psy5461 125 GAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVIP-------KPTSVV----- 192 (221)
Q Consensus 125 G~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~-------~p~~~v----- 192 (221)
|+|++||.|++.+.++++++++++.++|.+++++++|.||||+++.|++++++|||||+..+ .|.|++
T Consensus 322 G~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~~~~~~~~~~~~~P~~~~~i~ 401 (528)
T 3tr5_A 322 GQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVR 401 (528)
T ss_dssp SCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESSCCCCBCCCEEECCSEEEEEE
T ss_pred CeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999997521 112333
Q ss_pred -----ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 193 -----QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 193 -----~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
|.++|.+||++|++|||+ ++.++.
T Consensus 402 ~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~ 430 (528)
T 3tr5_A 402 LKDPLKQKALLKGLTQLSEEGAT-QLFRPL 430 (528)
T ss_dssp ESCGGGHHHHHHHHHHHHHTTSC-EEEEET
T ss_pred ECChhHHHHHHHHHHHHHhcCCe-EEEEcC
Confidence 789999999999999997 555553
No 7
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.97 E-value=6.8e-31 Score=243.28 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=136.8
Q ss_pred hccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCC-CCCcEEEEEEEee---cCCCceEEEEEEEce
Q psy5461 50 SGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHF-GDSLCARAFKVVH---DKHRGAVTFFRIYSG 125 (221)
Q Consensus 50 ~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~-~~~~~~~Vfk~~~---d~~~G~i~~~RV~sG 125 (221)
+++.++..+|||+|||++|.||++|||+|++++|+|.++......+.+ ++||+|+|||+.. ++++|+++|+||+||
T Consensus 244 ~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG 323 (529)
T 2h5e_A 244 ELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSG 323 (529)
T ss_dssp HHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEES
T ss_pred HHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecC
Confidence 445677899999999999999999999999999999875321111122 5799999999987 467999999999999
Q ss_pred EEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCCC-------CCCCce------
Q psy5461 126 AFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVIP-------KPTSVV------ 192 (221)
Q Consensus 126 ~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~-------~p~~~v------ 192 (221)
+|++||+|++.+.++.++|++++.++|.+++++++|.||||+++.|++++++||||++..+ .|.|++
T Consensus 324 ~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~~~~~~~~~~~~P~~~~~v~~ 403 (529)
T 2h5e_A 324 KYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRL 403 (529)
T ss_dssp CEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSCCCCBCCCEEECCSEEEEEEE
T ss_pred eEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCCccccCCCCCCCccEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998522 122444
Q ss_pred ----ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 193 ----QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 193 ----~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
|.++|.+||++|++||| +++.++.
T Consensus 404 ~~~~d~~kl~~~L~~L~~ed~-~~~~~~~ 431 (529)
T 2h5e_A 404 KDPLKQKQLLKGLVQLSEEGA-VQVFRPI 431 (529)
T ss_dssp SCC---CTHHHHHHHHHHTTS-CEEEEET
T ss_pred CChHHHHHHHHHHHHHHhhCC-EEEEEeC
Confidence 77899999999999998 6777654
No 8
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.96 E-value=6e-30 Score=242.65 Aligned_cols=164 Identities=23% Similarity=0.262 Sum_probs=146.5
Q ss_pred HHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEc
Q psy5461 45 FFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYS 124 (221)
Q Consensus 45 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~s 124 (221)
...+++++.++..+|++++||++|.||++|||+|++++|+|.++ ..++||+++|||+..|+++|+++++||||
T Consensus 235 ~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~-------~~~~p~~~~V~k~~~d~~~G~~~~~rV~s 307 (665)
T 2dy1_A 235 EKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER-------FGDGPPLAKVFKVQVDPFMGQVAYLRLYR 307 (665)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH-------HCSCSCEEEEEEEEEETTTEEEEEEEEEE
T ss_pred HHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc-------CCCCCeEEEEEEEEEcCCCCeEEEEEEcc
Confidence 44566777788899999999999999999999999999999742 15789999999999999999999999999
Q ss_pred eEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCCC----------CCCCce--
Q psy5461 125 GAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVIP----------KPTSVV-- 192 (221)
Q Consensus 125 G~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~----------~p~~~v-- 192 (221)
|+|++||+|++.+ +.++|++|+.++|.+.++++++.||||+++.|++++++||||++... .|.|++
T Consensus 308 G~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~~~~ 385 (665)
T 2dy1_A 308 GRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPV 385 (665)
T ss_dssp SEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCCEEE
T ss_pred cEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCceEEE
Confidence 9999999999876 66899999999999999999999999999999999999999997421 122555
Q ss_pred --------ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 193 --------QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 193 --------~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
|.++|.++|++|+++||++++.+|.
T Consensus 386 ~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~ 418 (665)
T 2dy1_A 386 ALHPKGRTDEARLGEALRKLLEEDPSLKLERQE 418 (665)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHCTTSEEEECT
T ss_pred EEEECChhhHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 7899999999999999999999864
No 9
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.95 E-value=3.3e-29 Score=236.64 Aligned_cols=162 Identities=18% Similarity=0.265 Sum_probs=141.8
Q ss_pred HHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceE
Q psy5461 47 RIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGA 126 (221)
Q Consensus 47 ~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~ 126 (221)
.++.+..++..+|||+|||++|.||++|||+|++++|+|.+ ...+||+|+|||+.+|+++|+++|+|||||+
T Consensus 202 ~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~--------~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~ 273 (638)
T 3j25_A 202 EESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTH--------RGPSELCGNVFKIEYTKKRQRLAYIRLYSGV 273 (638)
T ss_dssp HHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGG--------GSCCCCCBEEBCCCCCSTTCCCCBCCBSSBC
T ss_pred HHhhhhcccccccccccccccCCCchhHhhhhhccccCccc--------chhhhhcceeeeeeeeccCceEEEEEEEcCc
Confidence 34445667789999999999999999999999999999987 4578999999999999999999999999999
Q ss_pred EcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccCcEEecCC--------CCCCCce------
Q psy5461 127 FKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVI--------PKPTSVV------ 192 (221)
Q Consensus 127 L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~--------~~p~~~v------ 192 (221)
|++||+|++.+.+ ++++.+++.++|+++++++++.||||+++.| ..+++|||+++.. +.|.|++
T Consensus 274 l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep 351 (638)
T 3j25_A 274 LHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEP 351 (638)
T ss_dssp CCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEEC
T ss_pred ccCCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeecc
Confidence 9999999887654 5799999999999999999999999999988 5778888887651 2244444
Q ss_pred ----ehHHHHHHHHHHhhcCCceEEEcccc
Q psy5461 193 ----QCSARWTLNLEVGASSPIISKSKRRQ 218 (221)
Q Consensus 193 ----~~~~l~~~L~~L~~~Dp~l~~~~~~~ 218 (221)
|.++|.++|++|+++||++++.++.+
T Consensus 352 ~~~~d~~kL~~aL~kL~~eDPsl~v~~~~e 381 (638)
T 3j25_A 352 SKPEQREMLLDALLEISDSDPLLRYYVDST 381 (638)
T ss_dssp CSHHHHHHHHHHHHHHHHTCTTCCCCCCSS
T ss_pred CChHHHHHHHHHHHHHhhcCCeeEEEecCC
Confidence 78999999999999999999987754
No 10
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.93 E-value=6.8e-26 Score=219.71 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=133.3
Q ss_pred HHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccc-----------------cccCCCCCCcEEEEEEE
Q psy5461 46 FRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPAL-----------------AMFQHFGDSLCARAFKV 108 (221)
Q Consensus 46 ~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~-----------------~~~~~~~~~~~~~Vfk~ 108 (221)
..+++++ .+..+|+ +++|||+|++++|+|.+++.. ...|++++||+|+|||+
T Consensus 317 ~~l~~~~-~~~~~pv----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~ 385 (842)
T 1n0u_A 317 KALLKVV-MRKFLPA----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKM 385 (842)
T ss_dssp HHHHHHH-HHHHSBH----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEE
T ss_pred HHHHHHH-Hhhccch----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEee
Confidence 5666666 4456776 789999999999999865321 12467889999999999
Q ss_pred eecCCCce-EEEEEEEceEEcCCCEEEecc------CCc---eeeeceeEeeecCCeeeeCccccCCEEEEcCCCCCccC
Q psy5461 109 VHDKHRGA-VTFFRIYSGAFKKGQKFYNIH------LDQ---SEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGK 178 (221)
Q Consensus 109 ~~d~~~G~-i~~~RV~sG~L~~gd~v~~~~------~~~---~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~G 178 (221)
..+++.|+ ++|+|||||+|++||+|++.+ .++ .+||++|++++|+++++++++.|||||+|.|++++.+|
T Consensus 386 ~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~ 465 (842)
T 1n0u_A 386 VPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLK 465 (842)
T ss_dssp EEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCS
T ss_pred eecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceec
Confidence 99999996 999999999999999996543 334 58999999999999999999999999999999988554
Q ss_pred -cEEecCC--------CCC-CCce----------ehHHHHHHHHHHhhcCCceEEEcc
Q psy5461 179 -DKRTRVI--------PKP-TSVV----------QCSARWTLNLEVGASSPIISKSKR 216 (221)
Q Consensus 179 -dtl~~~~--------~~p-~~~v----------~~~~l~~~L~~L~~~Dp~l~~~~~ 216 (221)
+||++.. .-| .|++ |.++|.+||++|+++||++++.++
T Consensus 466 t~Tl~~~~~~~~l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~ 523 (842)
T 1n0u_A 466 TGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS 523 (842)
T ss_dssp SEEEESCTTCCCBCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred ceeecCCCCccccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 5998741 112 2555 889999999999999999999998
No 11
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.93 E-value=2.3e-24 Score=201.79 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=148.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCcE
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLC 102 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~~ 102 (221)
.+-|++..+||++......+-....+.+.. .-...+++++||++|.||++|+++|.+++|+|.. +.++||.
T Consensus 124 ~~ipiIvviNKiDl~~a~~~~v~~el~~~l-g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~--------~~~~pl~ 194 (600)
T 2ywe_A 124 QDLVIIPVINKIDLPSADVDRVKKQIEEVL-GLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG--------DPQKPLK 194 (600)
T ss_dssp TTCEEEEEEECTTSTTCCHHHHHHHHHHTS-CCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC--------CTTSCCE
T ss_pred CCCCEEEEEeccCccccCHHHHHHHHHHhh-CCCcccEEEEEeecCCCchHHHHHHHHhcccccc--------cccCCcc
Confidence 466899999996543221111122232221 1122358999999999999999999999999975 5678999
Q ss_pred EEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEE-cC---CCCCccC
Q psy5461 103 ARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV-TG---LKRERGK 178 (221)
Q Consensus 103 ~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i-~g---l~~~~~G 178 (221)
++||++++|++.|+++++||++|++++||.|++..+++.+++.+++.+.+ +.++++++.||||+++ .| ++++++|
T Consensus 195 ~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~G 273 (600)
T 2ywe_A 195 ALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIG 273 (600)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTT
T ss_pred eeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCC
Confidence 99999999999999999999999999999999999998899999997764 6889999999999976 45 4578999
Q ss_pred cEEecCC-C---------CCCCce----------ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 179 DKRTRVI-P---------KPTSVV----------QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 179 dtl~~~~-~---------~p~~~v----------~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
|||+... + .|.|++ |.++|.++|++|.++||++.+.+.-
T Consensus 274 Dtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~et 332 (600)
T 2ywe_A 274 DTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPES 332 (600)
T ss_dssp CEEEESSSCCSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred CEEEeCCCccccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEEECC
Confidence 9998742 1 123555 7789999999999999999998653
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.91 E-value=1.9e-23 Score=195.67 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=147.4
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCcE
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLC 102 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~~ 102 (221)
.+.|++..+||++......+-....+.+.. .....+++++||++|.||++|++.|.+++|+|.. +.++|+.
T Consensus 122 ~~ipiIvViNKiDl~~a~~~~v~~ei~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~--------~~~~p~~ 192 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAADPERVAEEIEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG--------DPEGPLQ 192 (599)
T ss_dssp TTCEEEEEEECTTSTTCCHHHHHHHHHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC--------CTTSCCE
T ss_pred CCCCEEEeeeccCcccccHHHHHHHHHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCCCccc--------cccCCce
Confidence 466899999996543221122223333221 2222358999999999999999999999999976 5789999
Q ss_pred EEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEE-cCC---CCCccC
Q psy5461 103 ARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV-TGL---KRERGK 178 (221)
Q Consensus 103 ~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i-~gl---~~~~~G 178 (221)
++||++++|++.|+++++||++|+|++||.+++..+++.+++.+++.+.+ +.++++++.||||+++ .|+ +++++|
T Consensus 193 alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~-~~~~~~~~~aGdi~~~~~gi~~~~~~~~G 271 (599)
T 3cb4_D 193 ALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTP-KQVDRTELKCGEVGWLVCAIKDIHGAPVG 271 (599)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESS-SEEECSEECTTCEEEEECCCSSGGGSCTT
T ss_pred eeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccC-CceECCEEcCCCeeEeeccccccccCccC
Confidence 99999999999999999999999999999999999998899999997765 5889999999999976 454 478999
Q ss_pred cEEecCC-C---------CCCCce----------ehHHHHHHHHHHhhcCCceEEEccc
Q psy5461 179 DKRTRVI-P---------KPTSVV----------QCSARWTLNLEVGASSPIISKSKRR 217 (221)
Q Consensus 179 dtl~~~~-~---------~p~~~v----------~~~~l~~~L~~L~~~Dp~l~~~~~~ 217 (221)
|||+... + .|.|++ |.++|.++|++|+++||++.+....
T Consensus 272 Dtl~~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~et 330 (599)
T 3cb4_D 272 DTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPES 330 (599)
T ss_dssp CEEEESSSCCSSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred CEeeecCCccccccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEEecc
Confidence 9998741 1 122555 5679999999999999999987543
No 13
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.73 E-value=2.4e-17 Score=154.38 Aligned_cols=127 Identities=14% Similarity=0.195 Sum_probs=109.8
Q ss_pred ccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEE
Q psy5461 55 KNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFY 134 (221)
Q Consensus 55 ~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~ 134 (221)
+..+|++++||++|.||++||++|..++|+|.+. .+..++++|+.++||++..+++.|+++++||++|+|++||.|+
T Consensus 189 ~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~---~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~ 265 (594)
T 1g7s_A 189 ASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE---QLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIA 265 (594)
T ss_dssp TTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG---GGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEE
T ss_pred cCcceEEEEeccCCCCchhHHHHHHhhccccchh---hhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEE
Confidence 3467999999999999999999999998865531 1123567899999999999999999999999999999999999
Q ss_pred eccCCcee--eeceeEeee--------cCCeeeeCccc--cCCEEEEcCCCCCccCcEEecC
Q psy5461 135 NIHLDQSE--QITRLLLAE--------ADDYKEVNEIQ--CGNIAAVTGLKRERGKDKRTRV 184 (221)
Q Consensus 135 ~~~~~~~~--~v~~i~~~~--------g~~~~~v~~a~--aGdIv~i~gl~~~~~Gdtl~~~ 184 (221)
+.+.+..+ +|++|+.+. +.+..+++++. +|+++++.|++++.+||||+..
T Consensus 266 ~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~ 327 (594)
T 1g7s_A 266 MMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVV 327 (594)
T ss_dssp EEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTTCEEEEC
T ss_pred ECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCCCCCCEEEec
Confidence 98877544 999998763 66788999988 9999999999999999999875
No 14
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.66 E-value=3.9e-16 Score=139.66 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=115.2
Q ss_pred CCc-eeeeeeeecccc--cCCcchHHHHhhcc----ccccCceeEecCCCcccc------------------HHHHHHHH
Q psy5461 24 GDS-LCARAFKVVHDK--HRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNIG------------------VQKLMDAI 78 (221)
Q Consensus 24 ~~~-~~~~vfk~~~d~--~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~G------------------i~~LLd~I 78 (221)
+-| ++..++|++... ..-+.....+.+.. ......|++.+||++|.| +.+|+++|
T Consensus 127 ~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l 206 (405)
T 2c78_A 127 GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAI 206 (405)
T ss_dssp TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHH
Confidence 446 788999965321 10111112222211 122357999999999987 89999999
Q ss_pred HhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCC---ceeeeceeEeeecCCe
Q psy5461 79 VDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLD---QSEQITRLLLAEADDY 155 (221)
Q Consensus 79 ~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~---~~~~v~~i~~~~g~~~ 155 (221)
.+++|.|.. ..++||.+.|.+++.++++|+++++||++|+|++||+|.+.+.+ ...+|.+|... .
T Consensus 207 ~~~lp~p~~--------~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~ 274 (405)
T 2c78_A 207 DEYIPTPVR--------DVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----R 274 (405)
T ss_dssp HHHSCCCCC--------CCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----T
T ss_pred HhhcCCCCC--------CCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----C
Confidence 999998865 46789999999999999999999999999999999999998876 47899998643 3
Q ss_pred eeeCccccCCEEEEc--CC--CCCccCcEEecC
Q psy5461 156 KEVNEIQCGNIAAVT--GL--KRERGKDKRTRV 184 (221)
Q Consensus 156 ~~v~~a~aGdIv~i~--gl--~~~~~Gdtl~~~ 184 (221)
.++++|.|||++++. |+ +++++||+++..
T Consensus 275 ~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~ 307 (405)
T 2c78_A 275 KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKP 307 (405)
T ss_dssp EEESEEETTCEEEEEESSCCTTTCCTTCEEEST
T ss_pred cccCEEcCCCEEEEEECCCcHhhcCceEEEEcC
Confidence 688999999999654 65 578999999975
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.63 E-value=9.4e-16 Score=136.94 Aligned_cols=149 Identities=20% Similarity=0.226 Sum_probs=114.3
Q ss_pred CCc-eeeeeeeecccc--cCCcchHHHHhhcc----ccccCceeEecCCCccc---------c-HHHHHHHHHhhCCCCC
Q psy5461 24 GDS-LCARAFKVVHDK--HRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNI---------G-VQKLMDAIVDILPSPT 86 (221)
Q Consensus 24 ~~~-~~~~vfk~~~d~--~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~---------G-i~~LLd~I~~~~PsP~ 86 (221)
+-| ++..++|++... ..-+.....+++.. .....+|++.+||++|. | |.+|+++|.+++|.|.
T Consensus 118 ~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 118 GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 446 678999965321 11111222232222 12235799999999976 4 9999999999999886
Q ss_pred CcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCC--ceeeeceeEeeecCCeeeeCccccC
Q psy5461 87 ERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLD--QSEQITRLLLAEADDYKEVNEIQCG 164 (221)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~v~~a~aG 164 (221)
. +.++||.+.|++++.++++|+++++||++|+|++||+|++.+.+ +..+|++|... ..++++|.||
T Consensus 198 ~--------~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG 265 (397)
T 1d2e_A 198 R--------DLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAG 265 (397)
T ss_dssp C--------CTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETT
T ss_pred C--------CCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCC
Confidence 5 46789999999999999999999999999999999999987764 56789998643 2678999999
Q ss_pred CEEEEc--CC--CCCccCcEEecC
Q psy5461 165 NIAAVT--GL--KRERGKDKRTRV 184 (221)
Q Consensus 165 dIv~i~--gl--~~~~~Gdtl~~~ 184 (221)
|++++. |+ ++++.||+++..
T Consensus 266 ~~v~~~l~~i~~~~i~~G~~l~~~ 289 (397)
T 1d2e_A 266 DNLGALVRGLKREDLRRGLVMAKP 289 (397)
T ss_dssp CEEEEEESSCCGGGCCTTCEEEST
T ss_pred CceEEEecccchhccCceeEEeCC
Confidence 999654 66 478999999975
No 16
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.55 E-value=1.9e-14 Score=129.99 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=110.0
Q ss_pred ceeeeeeeecccc--cC---CcchHHHHhhcccc----ccCceeEecCCCccccHH------------HHHHHHHhhCCC
Q psy5461 26 SLCARAFKVVHDK--HR---GAVTFFRIYSGAFK----KNHVPVLCGSSYKNIGVQ------------KLMDAIVDILPS 84 (221)
Q Consensus 26 ~~~~~vfk~~~d~--~~---g~l~~~~l~~~~~~----~~~~Pv~~gSa~~~~Gi~------------~LLd~I~~~~Ps 84 (221)
+++..++|++... .. -+.....+.+.... ....|++..||++|.||. .|+++|.. +|+
T Consensus 146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~ 224 (435)
T 1jny_A 146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LEL 224 (435)
T ss_dssp TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCC
T ss_pred eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCC
Confidence 5888999965322 10 11222333332211 224789999999999996 79999766 455
Q ss_pred CCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccC
Q psy5461 85 PTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCG 164 (221)
Q Consensus 85 P~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG 164 (221)
|.. ..++|+.+.|..++..++.|+++++||++|+|++||.|++.+.+...+|++|+.. ..++++|.||
T Consensus 225 p~~--------~~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG 292 (435)
T 1jny_A 225 PPK--------PVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPG 292 (435)
T ss_dssp CCC--------GGGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTT
T ss_pred CCC--------CCCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCC
Confidence 653 2357888888888888899999999999999999999999988888999999642 4689999999
Q ss_pred CEEEE--cCC--CCCccCcEEecC
Q psy5461 165 NIAAV--TGL--KRERGKDKRTRV 184 (221)
Q Consensus 165 dIv~i--~gl--~~~~~Gdtl~~~ 184 (221)
|++++ .|+ +++++||+++..
T Consensus 293 ~~v~~~l~g~~~~~i~~Gd~l~~~ 316 (435)
T 1jny_A 293 DNIGFNVRGVEKKDIKRGDVVGHP 316 (435)
T ss_dssp CEEEEEEESSCGGGCCTTCEEECT
T ss_pred CEEEEEEecCCHHHcCCccEecCC
Confidence 99976 454 578999999975
No 17
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.54 E-value=8.4e-15 Score=129.89 Aligned_cols=152 Identities=11% Similarity=-0.021 Sum_probs=106.9
Q ss_pred CCce-eeeee-eecccccCCcchHHHHhhcccc--ccCceeEe--cCCCc---cccHHHHHHHHHhhCCCCCCccccccc
Q psy5461 24 GDSL-CARAF-KVVHDKHRGAVTFFRIYSGAFK--KNHVPVLC--GSSYK---NIGVQKLMDAIVDILPSPTERPALAMF 94 (221)
Q Consensus 24 ~~~~-~~~vf-k~~~d~~~g~l~~~~l~~~~~~--~~~~Pv~~--gSa~~---~~Gi~~LLd~I~~~~PsP~~~~~~~~~ 94 (221)
+.+. +..++ |++.++..-+.....+.+.... ...+|+++ +||++ |.||++|++.|.+++|+|... ...
T Consensus 111 ~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~-~~~-- 187 (370)
T 2elf_A 111 GFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAE-NAE-- 187 (370)
T ss_dssp TCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHH-HHH--
T ss_pred CCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccC-Ccc--
Confidence 3455 78888 9654211001112333332211 23579999 99999 999999999999999876210 000
Q ss_pred CCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEc--CC
Q psy5461 95 QHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVT--GL 172 (221)
Q Consensus 95 ~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~--gl 172 (221)
....|+..+|..++..++.|+++++||++|++++||+|++...++..+|++|.. ++ +++++|.|||++++. |+
T Consensus 188 -~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~---~~v~~a~aGd~v~i~l~gv 262 (370)
T 2elf_A 188 -LNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-HD---VDIDSAPAGTRVGMRLKNV 262 (370)
T ss_dssp -GGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-TT---EEESEEETTCEEEEEEESC
T ss_pred -cccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-CC---CCccEEcCCCcceEEEecc
Confidence 023455556666666688999999999999999999999998888899999964 32 689999999999765 54
Q ss_pred --CCCccCcEEec
Q psy5461 173 --KRERGKDKRTR 183 (221)
Q Consensus 173 --~~~~~Gdtl~~ 183 (221)
+++++||+++.
T Consensus 263 ~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 263 QAKDIERGFIISD 275 (370)
T ss_dssp CGGGCCTTCEEES
T ss_pred CHHHcCCceEEEC
Confidence 47899999997
No 18
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.53 E-value=9.6e-14 Score=124.29 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=107.1
Q ss_pred Cceeeeeeeeccccc-CCcchHHHHhhcccc--ccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCc
Q psy5461 25 DSLCARAFKVVHDKH-RGAVTFFRIYSGAFK--KNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSL 101 (221)
Q Consensus 25 ~~~~~~vfk~~~d~~-~g~l~~~~l~~~~~~--~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~ 101 (221)
.+++..++|++.... .....++.+.+-... ...+|++.+||++|.||++|+++|.+++|.|.. +.+.|+
T Consensus 138 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~--------~~~~~~ 209 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKR--------DPNKPP 209 (410)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC--------CTTSCC
T ss_pred CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc--------ccCCCc
Confidence 468888999653221 111233344332221 246799999999999999999999999998865 456788
Q ss_pred EEEEEEEe--------ecCCCceEEEEEEEceEEcCCCEEEeccCCc------------eeeeceeEeeecCCeeeeCcc
Q psy5461 102 CARAFKVV--------HDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQ------------SEQITRLLLAEADDYKEVNEI 161 (221)
Q Consensus 102 ~~~Vfk~~--------~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a 161 (221)
.+.|..++ .++++|+++++||++|+|++||+|.+...++ ..+|.+|+ . ...++++|
T Consensus 210 ~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~---~-~~~~v~~a 285 (410)
T 1kk1_A 210 KMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ---A-GGQFVEEA 285 (410)
T ss_dssp EEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE---E-TTEEESEE
T ss_pred EEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE---E-CCeEecEE
Confidence 88888765 3566899999999999999999999875432 34566655 2 35689999
Q ss_pred ccCCEEEEc-C----C--CCCccCcEEecCC
Q psy5461 162 QCGNIAAVT-G----L--KRERGKDKRTRVI 185 (221)
Q Consensus 162 ~aGdIv~i~-g----l--~~~~~Gdtl~~~~ 185 (221)
.|||++++. + + +++..||+++...
T Consensus 286 ~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~ 316 (410)
T 1kk1_A 286 YPGGLVGVGTKLDPYLTKGDLMAGNVVGKPG 316 (410)
T ss_dssp CSSSCEEEEESSCGGGTGGGTTTTCEEECTT
T ss_pred cCCCEEEEEEecCcccchhhccceeEEecCC
Confidence 999988664 2 2 3567899998753
No 19
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.52 E-value=8.9e-14 Score=124.30 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=111.2
Q ss_pred Cceeeeeeeeccc-ccCCcchHHHHhhccc--cccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCc
Q psy5461 25 DSLCARAFKVVHD-KHRGAVTFFRIYSGAF--KKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSL 101 (221)
Q Consensus 25 ~~~~~~vfk~~~d-~~~g~l~~~~l~~~~~--~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~ 101 (221)
.+++..++|++.. ....+..+..+.+... .....|++..||++|.||++|+++|.+++|.|.. ..+.|+
T Consensus 130 ~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~--------~~~~~~ 201 (403)
T 3sjy_A 130 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR--------DLSQKP 201 (403)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC--------CTTSCC
T ss_pred CCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC--------CCCCCc
Confidence 4788999996532 2111222333333221 2236799999999999999999999999998865 457899
Q ss_pred EEEEEEEee--------cCCCceEEEEEEEceEEcCCCEEEeccCCc------------eeeeceeEeeecCCeeeeCcc
Q psy5461 102 CARAFKVVH--------DKHRGAVTFFRIYSGAFKKGQKFYNIHLDQ------------SEQITRLLLAEADDYKEVNEI 161 (221)
Q Consensus 102 ~~~Vfk~~~--------d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a 161 (221)
.+.|..++. ++++|.++++||.+|++++||+|.+...++ ..+|++|+. ...++++|
T Consensus 202 ~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a 277 (403)
T 3sjy_A 202 VMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEA 277 (403)
T ss_dssp EEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEE
T ss_pred EEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEE
Confidence 999988764 455899999999999999999999975443 357888864 34689999
Q ss_pred ccCCEEEEc-----CC--CCCccCcEEecCC
Q psy5461 162 QCGNIAAVT-----GL--KRERGKDKRTRVI 185 (221)
Q Consensus 162 ~aGdIv~i~-----gl--~~~~~Gdtl~~~~ 185 (221)
.|||++++. ++ +++..||+++...
T Consensus 278 ~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~ 308 (403)
T 3sjy_A 278 KPGGLVAIGTYLDPSLTKADNLLGSIITLAD 308 (403)
T ss_dssp CSSSCEEEEESSCHHHHGGGTTTTCEEEETT
T ss_pred eCCCEEEEEeccccccchhhhccccEEeCCC
Confidence 999999873 22 3678999998753
No 20
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.51 E-value=7.2e-14 Score=126.43 Aligned_cols=113 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred CceeEecCCCccccHHH------------HHHHHHhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEc
Q psy5461 57 HVPVLCGSSYKNIGVQK------------LMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYS 124 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~------------LLd~I~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~s 124 (221)
.+|++..||++|.|+.+ |++.+ +.+|+|.. ..++||.+.|..++. +.|+++.+||.+
T Consensus 198 ~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l-~~i~~~~~--------~~~~p~r~~v~~~~~--~~G~v~~G~v~~ 266 (439)
T 3j2k_7 198 DIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-DNLPNFNR--------SVDGPIRLPIVDKYK--DMGTVVLGKLES 266 (439)
T ss_pred CeeEEEeeccCCcccccccccccccCchHHHHHH-HhCCCCcc--------CCCCCeEEEEEEEEc--CCCeEEEEEEEe
Confidence 57899999999999998 55544 45777654 457899999998875 569999999999
Q ss_pred eEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEE--EcCCC--CCccCcEEecC
Q psy5461 125 GAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAA--VTGLK--RERGKDKRTRV 184 (221)
Q Consensus 125 G~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~--i~gl~--~~~~Gdtl~~~ 184 (221)
|+|++||+|.+...+.+.+|++|+. ...++++|.|||.|+ +.|++ +++.||++++.
T Consensus 267 G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~ 326 (439)
T 3j2k_7 267 GSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFILCDP 326 (439)
T ss_pred eEEecCCEEEEccCCceEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEecCC
Confidence 9999999999999888889999874 346899999999997 77776 67999999875
No 21
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.51 E-value=9.6e-14 Score=126.89 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=109.4
Q ss_pred CceeeeeeeecccccCCcchHHHHhhcc--------ccccCceeEecCCCccccHH------------------HHHHHH
Q psy5461 25 DSLCARAFKVVHDKHRGAVTFFRIYSGA--------FKKNHVPVLCGSSYKNIGVQ------------------KLMDAI 78 (221)
Q Consensus 25 ~~~~~~vfk~~~d~~~g~l~~~~l~~~~--------~~~~~~Pv~~gSa~~~~Gi~------------------~LLd~I 78 (221)
.+++..++|++.... -+..++.+.+.. ......|++..||++|.||. ++|+.+
T Consensus 172 ~~iIvviNK~Dl~~~-~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i 250 (483)
T 3p26_A 172 HNLIIAMNKMDNVDW-SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENA 250 (483)
T ss_dssp CCEEEEEECGGGGTT-CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHH
T ss_pred CcEEEEEECcCcccc-hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHH
Confidence 458889999653221 122222222221 12225789999999999986 356666
Q ss_pred HhhCCC--CCCcccccccCCCCCCcEEEEEEEeecC---CCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeee--
Q psy5461 79 VDILPS--PTERPALAMFQHFGDSLCARAFKVVHDK---HRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAE-- 151 (221)
Q Consensus 79 ~~~~Ps--P~~~~~~~~~~~~~~~~~~~Vfk~~~d~---~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~-- 151 (221)
...+|. |.. ..+.|+.+.|..++..+ +.|+++.+||.+|+|++||+|.+...+...+|++|....
T Consensus 251 ~~~~~~~~p~~--------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~ 322 (483)
T 3p26_A 251 AFKISKENEGI--------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQ 322 (483)
T ss_dssp HHHHHHHHTTC--------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC
T ss_pred Hhhcccccccc--------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCcc
Confidence 655655 433 45789999999988876 479999999999999999999999988888999998552
Q ss_pred --cCCeeeeCccccCCEEEE--cCC--CCCccCcEEecCC
Q psy5461 152 --ADDYKEVNEIQCGNIAAV--TGL--KRERGKDKRTRVI 185 (221)
Q Consensus 152 --g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~ 185 (221)
|.++.++++|.|||+|++ .+. ++++.||+++...
T Consensus 323 ~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~~~~ 362 (483)
T 3p26_A 323 GQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 362 (483)
T ss_dssp -----CCEESCEETTCEEEEEEESCCGGGCCTTCEEECTT
T ss_pred ccccccccccEECCCCEEEEEEEecccccCCceEEEEcCC
Confidence 455689999999999976 444 6889999999753
No 22
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=3e-13 Score=121.04 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=104.6
Q ss_pred Cceeeeeeeecccc-cCCcchHHHHhhcccc--ccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCc
Q psy5461 25 DSLCARAFKVVHDK-HRGAVTFFRIYSGAFK--KNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSL 101 (221)
Q Consensus 25 ~~~~~~vfk~~~d~-~~g~l~~~~l~~~~~~--~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~ 101 (221)
.+++..++|++... ......++.+.+.... ....|++..||++|.||++|+++|.+.+|.|.. +.+.|+
T Consensus 136 ~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~--------~~~~~~ 207 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR--------DPDATP 207 (408)
T ss_dssp CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCC--------CTTSCC
T ss_pred CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc--------cCCCCe
Confidence 37889999975322 2122344444443221 246799999999999999999999999998864 457889
Q ss_pred EEEEEEEee--------cCCCceEEEEEEEceEEcCCCEEEeccCCc------------eeeeceeEeeecCCeeeeCcc
Q psy5461 102 CARAFKVVH--------DKHRGAVTFFRIYSGAFKKGQKFYNIHLDQ------------SEQITRLLLAEADDYKEVNEI 161 (221)
Q Consensus 102 ~~~Vfk~~~--------d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a 161 (221)
.+.|..++. ++++|.++.+||.+|+|++||.|.+...++ ..+|.+|+. ...++++|
T Consensus 208 ~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a 283 (408)
T 1s0u_A 208 RMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA----GNTILRKA 283 (408)
T ss_dssp EEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE----TTEEESEE
T ss_pred EEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE----CCEEcCEE
Confidence 998887653 445789999999999999999999865321 467888864 23679999
Q ss_pred ccCCEEEEcC-----C--CCCccCcEEecCC
Q psy5461 162 QCGNIAAVTG-----L--KRERGKDKRTRVI 185 (221)
Q Consensus 162 ~aGdIv~i~g-----l--~~~~~Gdtl~~~~ 185 (221)
.|||.+++.. + ++++.||+++...
T Consensus 284 ~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~ 314 (408)
T 1s0u_A 284 HPGGLIGVGTTLDPYLTKSDALTGSVVGLPG 314 (408)
T ss_dssp CSSSCEEEECSSCGGGTGGGTTTTCEEESTT
T ss_pred eCCCeEEEEeccCcccchhhccceeEEECCC
Confidence 9999998742 2 2578999998753
No 23
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.50 E-value=8.3e-14 Score=137.54 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=114.2
Q ss_pred CCc-eeeeeeeecccc--cCCcchHHHHhhcc----ccccCceeEecCCCcc--------ccHHHHHHHHHhhCCCCCCc
Q psy5461 24 GDS-LCARAFKVVHDK--HRGAVTFFRIYSGA----FKKNHVPVLCGSSYKN--------IGVQKLMDAIVDILPSPTER 88 (221)
Q Consensus 24 ~~~-~~~~vfk~~~d~--~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~--------~Gi~~LLd~I~~~~PsP~~~ 88 (221)
+-| ++..++|++... ..-+.....+.+.. .....+|++.+||++| .||.+|+++|.+++|.|..
T Consensus 411 gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r- 489 (1289)
T 3avx_A 411 GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER- 489 (1289)
T ss_dssp TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC-
T ss_pred CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc-
Confidence 345 688899965322 11111122222211 1223589999999999 6899999999999998865
Q ss_pred ccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCC--ceeeeceeEeeecCCeeeeCccccCCE
Q psy5461 89 PALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLD--QSEQITRLLLAEADDYKEVNEIQCGNI 166 (221)
Q Consensus 89 ~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~--~~~~v~~i~~~~g~~~~~v~~a~aGdI 166 (221)
..++||.+.|..++.++++|+++++||++|+|++||+|.+.+.+ ...+|++|... ..++++|.|||+
T Consensus 490 -------~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~----~~~v~eA~AGd~ 558 (1289)
T 3avx_A 490 -------AIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF----RKLLDEGRAGEN 558 (1289)
T ss_dssp -------GGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECS----SCEESEEETTCE
T ss_pred -------ccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeec----CceeeEEecCCc
Confidence 45689999999999899999999999999999999999988776 56899998643 357899999999
Q ss_pred EEE--cCC--CCCccCcEEecC
Q psy5461 167 AAV--TGL--KRERGKDKRTRV 184 (221)
Q Consensus 167 v~i--~gl--~~~~~Gdtl~~~ 184 (221)
+++ .|+ ++++.||+|+..
T Consensus 559 Vgl~L~GI~~~dI~RGdVL~~~ 580 (1289)
T 3avx_A 559 VGVLLRGIKREEIERGQVLAKP 580 (1289)
T ss_dssp EEEEESSCCGGGCCTTCEEEST
T ss_pred ceeEeeecchhcCCcccEEecC
Confidence 865 476 478999999975
No 24
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=1.9e-13 Score=128.02 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=112.0
Q ss_pred ceeeeeeeecccc---cCCcchHHHHhhcc-----ccccCceeEecCCCccccHH--------------HHHHHHHhhCC
Q psy5461 26 SLCARAFKVVHDK---HRGAVTFFRIYSGA-----FKKNHVPVLCGSSYKNIGVQ--------------KLMDAIVDILP 83 (221)
Q Consensus 26 ~~~~~vfk~~~d~---~~g~l~~~~l~~~~-----~~~~~~Pv~~gSa~~~~Gi~--------------~LLd~I~~~~P 83 (221)
+++..+||++... ..-+.....+.... .....+|++.+||++|.||. .|+++|...+|
T Consensus 317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 3888999965321 11111222222221 12234689999999999998 89999999887
Q ss_pred CCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeC-ccc
Q psy5461 84 SPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVN-EIQ 162 (221)
Q Consensus 84 sP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~-~a~ 162 (221)
|.. ..++||.+.|..++.. +.|+++++||.+|+|++||.|.+...+...+|++|... ..+++ +|.
T Consensus 397 -p~~--------~~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~----~~~~~~~a~ 462 (592)
T 3mca_A 397 -PEK--------PYRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN----SDPSSTWAV 462 (592)
T ss_dssp -CSC--------TTTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS----SSCSCCEEE
T ss_pred -ccc--------cccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc----CccCcceec
Confidence 332 4578999999999999 89999999999999999999999988888899999842 35788 999
Q ss_pred cCCEEE--EcCCC--CCccCcEEecC
Q psy5461 163 CGNIAA--VTGLK--RERGKDKRTRV 184 (221)
Q Consensus 163 aGdIv~--i~gl~--~~~~Gdtl~~~ 184 (221)
|||+|+ +.|++ +++.||+++..
T Consensus 463 aG~~v~~~l~~i~~~~i~rG~vl~~~ 488 (592)
T 3mca_A 463 AGDTVTLQLADIEVNQLRPGDILSNY 488 (592)
T ss_dssp TTCEEEEEESSSCGGGCCTTCEEECS
T ss_pred CCCEEEEEEccccccccceEEEeccC
Confidence 999996 56765 68999999976
No 25
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.45 E-value=4.7e-14 Score=130.54 Aligned_cols=151 Identities=14% Similarity=0.072 Sum_probs=112.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhc----cccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSG----AFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFG 98 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~----~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~ 98 (221)
.+-|++..++|++............+... ...+..+|++.+||++|.||++|++.|...++.+... .+++
T Consensus 103 ~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~------~~~~ 176 (537)
T 3izy_P 103 AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELK------ADPT 176 (537)
T ss_dssp TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCC------CCSS
T ss_pred cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhccccc------CCCC
Confidence 45689999999764321111111112111 1112367999999999999999999999887654321 1467
Q ss_pred CCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCC-cc
Q psy5461 99 DSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRE-RG 177 (221)
Q Consensus 99 ~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~ 177 (221)
.|+.+.|+++..++++|++++++|.+|+|++||.+... ....+|+.|+... ..++++|.||++|.|.|+++. ..
T Consensus 177 ~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~---g~~v~~A~~G~~V~i~g~~~~~~~ 251 (537)
T 3izy_P 177 GAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG--KSWAKVRLMFDEN---GRAVNEAYPSMPVGIIGWRDLPSA 251 (537)
T ss_dssp SSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS--SCCEEEEEEEECC---CCCSCCSCCSTTCCCCSSEEEEEE
T ss_pred CCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC--CceEEEEEEEcCC---CCCCcEEcCCCEEEEECCCCCCCC
Confidence 89999999999999999999999999999999998542 2335777765443 357999999999999999875 89
Q ss_pred CcEEecC
Q psy5461 178 KDKRTRV 184 (221)
Q Consensus 178 Gdtl~~~ 184 (221)
||+|+..
T Consensus 252 Gd~l~~~ 258 (537)
T 3izy_P 252 GDEILEV 258 (537)
T ss_dssp ESSCCSC
T ss_pred CCEEEec
Confidence 9999875
No 26
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.45 E-value=3.3e-13 Score=126.76 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=109.4
Q ss_pred CceeeeeeeecccccCCcchHHHHhhcc--------ccccCceeEecCCCccccHHH---------------HHHHHHhh
Q psy5461 25 DSLCARAFKVVHDKHRGAVTFFRIYSGA--------FKKNHVPVLCGSSYKNIGVQK---------------LMDAIVDI 81 (221)
Q Consensus 25 ~~~~~~vfk~~~d~~~g~l~~~~l~~~~--------~~~~~~Pv~~gSa~~~~Gi~~---------------LLd~I~~~ 81 (221)
.+++..++|++.... .+..+..+.... ......|++..||++|.||.+ |++.|...
T Consensus 306 ~~iIVVvNKiDl~~~-~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l 384 (611)
T 3izq_1 306 HNLIIAMNKMDNVDW-SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENA 384 (611)
T ss_dssp CEEEEEEECTTTTTT-CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTS
T ss_pred CeEEEEEecccccch-hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHH
Confidence 358888999653221 112222222211 112257899999999999874 45555443
Q ss_pred ---CCC--CCCcccccccCCCCCCcEEEEEEEeecC---CCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeee--
Q psy5461 82 ---LPS--PTERPALAMFQHFGDSLCARAFKVVHDK---HRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAE-- 151 (221)
Q Consensus 82 ---~Ps--P~~~~~~~~~~~~~~~~~~~Vfk~~~d~---~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~-- 151 (221)
+|. |.. ..+.||.+.|..++..+ +.|+++.+||.+|+|++||.|.+...+...+|++|....
T Consensus 385 ~~~~p~~~p~~--------~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~ 456 (611)
T 3izq_1 385 AFKISKENEGI--------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQ 456 (611)
T ss_dssp CCCCCCSSSCC--------SCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCC
T ss_pred hhcccccCccc--------ccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccc
Confidence 232 221 35689999999998876 579999999999999999999999988888999998552
Q ss_pred --cCCeeeeCccccCCEEEE--cCC--CCCccCcEEecC
Q psy5461 152 --ADDYKEVNEIQCGNIAAV--TGL--KRERGKDKRTRV 184 (221)
Q Consensus 152 --g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~ 184 (221)
|..+.++++|.|||+|++ .|+ ++++.||+++..
T Consensus 457 ~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~~~ 495 (611)
T 3izq_1 457 GQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASV 495 (611)
T ss_dssp SCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTCEEBCS
T ss_pred cccccccccceecCCCcceEEeeeccHhhCcceEEccCC
Confidence 556788999999999976 454 688999999975
No 27
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.36 E-value=1.1e-12 Score=119.59 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=93.9
Q ss_pred CceeEecCCCccccHHH--------------HHHHHHhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEE
Q psy5461 57 HVPVLCGSSYKNIGVQK--------------LMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRI 122 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~--------------LLd~I~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV 122 (221)
.+|++..||++|.||.+ |++.|. .+|.|.. ..++||.+.|..++.+ .|+++++||
T Consensus 225 ~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~-~i~~~~~--------~~~~p~~~~v~~~~~~--~G~v~~G~v 293 (467)
T 1r5b_A 225 DVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLD-SMTHLER--------KVNAPFIMPIASKYKD--LGTILEGKI 293 (467)
T ss_dssp HEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHH-HCCCCHH--------HHTSCCEEECCEEEES--SSEEEEEEC
T ss_pred CceEEecccccccccccccccccCccccchhHHHHHH-hCCCCcC--------CCCCCcEEEEEEEEeC--CCeEEEEEE
Confidence 57899999999999875 566654 5777643 3468999999888754 689999999
Q ss_pred EceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEE--cC-CCCCccCcEEecC
Q psy5461 123 YSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV--TG-LKRERGKDKRTRV 184 (221)
Q Consensus 123 ~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l~~~~~Gdtl~~~ 184 (221)
.+|+|++||.|.+...++..+|++|+.. ...++++|.|||++++ .| .++++.||+++..
T Consensus 294 ~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i~rG~vl~~~ 355 (467)
T 1r5b_A 294 EAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDVQTGYVLTST 355 (467)
T ss_dssp CBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESEEETTCEEEEEEESCCTTCCTTCEEECS
T ss_pred eeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhCCceEEEeCC
Confidence 9999999999999888878899988632 2568999999999976 66 5688999999975
No 28
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.35 E-value=5.3e-12 Score=114.74 Aligned_cols=146 Identities=15% Similarity=0.088 Sum_probs=110.1
Q ss_pred ceeeeeeeecccc---cCCcchHHHHhhccc----cccCceeEecCCCccccHH------------------------HH
Q psy5461 26 SLCARAFKVVHDK---HRGAVTFFRIYSGAF----KKNHVPVLCGSSYKNIGVQ------------------------KL 74 (221)
Q Consensus 26 ~~~~~vfk~~~d~---~~g~l~~~~l~~~~~----~~~~~Pv~~gSa~~~~Gi~------------------------~L 74 (221)
+++..+||++... ..-+.....+.+... +....|++..||++|.||. .|
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~L 226 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTL 226 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSH
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHH
Confidence 4888999975321 111112222222111 1124789999999999985 58
Q ss_pred HHHHHhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCC
Q psy5461 75 MDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADD 154 (221)
Q Consensus 75 Ld~I~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~ 154 (221)
+++|.. +|+|.. ..+.|+.+.|..++..++.|+++++||.+|+++.||+|.+...+...+|.+|...
T Consensus 227 l~~l~~-~~~p~~--------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---- 293 (458)
T 1f60_A 227 LEAIDA-IEQPSR--------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH---- 293 (458)
T ss_dssp HHHHHT-SCCCCC--------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET----
T ss_pred HHHhhc-cCCCcc--------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC----
Confidence 888765 566654 4578999999999999999999999999999999999999988888899998742
Q ss_pred eeeeCccccCCEEEE--cCC--CCCccCcEEecC
Q psy5461 155 YKEVNEIQCGNIAAV--TGL--KRERGKDKRTRV 184 (221)
Q Consensus 155 ~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~ 184 (221)
..++++|.|||++++ .|+ ++++.||+|+..
T Consensus 294 ~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~~ 327 (458)
T 1f60_A 294 HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDA 327 (458)
T ss_dssp TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEET
T ss_pred CeEEEEEcCCCEEEEEEcCCcccccCceeEEecC
Confidence 357899999999865 576 478999999875
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.35 E-value=1.5e-12 Score=119.63 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=106.4
Q ss_pred CCCceeeeeeeecccccCC-----cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRG-----AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHF 97 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g-----~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~ 97 (221)
.+-|++..+||++...... ++....+..... +..+|++.+||++|.||++|++.|......+.. ...+
T Consensus 102 ~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~-~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~------~~~~ 174 (501)
T 1zo1_I 102 AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEW-GGESQFVHVSAKAGTGIDELLDAILLQAEVLEL------KAVR 174 (501)
T ss_dssp TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCC-SSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTT------TSCC
T ss_pred cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHh-CCCccEEEEeeeeccCcchhhhhhhhhhhhhcc------cccc
Confidence 4568999999975322111 111111111111 235799999999999999999999865322211 1145
Q ss_pred CCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCCCC-c
Q psy5461 98 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRE-R 176 (221)
Q Consensus 98 ~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~ 176 (221)
+.|+.+.|+++..++++|+++++||++|+|++||.+.+.. ...+|+.| .+.+..+++++.||+.+.+.|+++. .
T Consensus 175 ~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i---~~~~g~~v~~a~~g~~V~i~gl~~~~~ 249 (501)
T 1zo1_I 175 KGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF--EYGRVRAM---RNELGQEVLEAGPSIPVEILGLSGVPA 249 (501)
T ss_dssp CSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB--SSCEEEEE---CCTTTTSEEEECCSSCSSSEEECSCCC
T ss_pred ccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc--ceeEEEEE---EecCCCcCcEeccCCcEEEeCCCCCCC
Confidence 6789999999999999999999999999999999998753 22355554 4444457889999999988898874 8
Q ss_pred cCcEEec
Q psy5461 177 GKDKRTR 183 (221)
Q Consensus 177 ~Gdtl~~ 183 (221)
.||+++.
T Consensus 250 ~Gd~~~~ 256 (501)
T 1zo1_I 250 AGDEVTV 256 (501)
T ss_dssp TTEEEEE
T ss_pred CCCEEEe
Confidence 9999964
No 30
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.34 E-value=3.8e-12 Score=114.77 Aligned_cols=116 Identities=15% Similarity=0.068 Sum_probs=95.1
Q ss_pred CceeEecCCCccccHHH------------HHHHHHhhCCCCCCcccccccCCCCCCcEEEEEEEeecCCCceEEEEEEEc
Q psy5461 57 HVPVLCGSSYKNIGVQK------------LMDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYS 124 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~------------LLd~I~~~~PsP~~~~~~~~~~~~~~~~~~~Vfk~~~d~~~G~i~~~RV~s 124 (221)
..|++..||++|.||.+ |++.| +.+|.|.. ..++|+.+.|..+....+.|+...+||.+
T Consensus 197 ~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l-~~i~~~~~--------~~~~~~~~~v~~v~~~~~~~~g~~G~v~~ 267 (434)
T 1zun_B 197 TMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL-ETVEIASD--------RNYTDLRFPVQYVNRPNLNFRGFAGTLAS 267 (434)
T ss_dssp EEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHH-HHSCCTTC--------CCSSSCEEECCEEECSSSSCCEEEEECCB
T ss_pred CceEEEEeccCCCCcccccccCccccCchHHHHH-hcCCCccc--------CCCCCcEEEEEEEeccCCCceEEEEEEec
Confidence 47899999999999987 66644 45777654 45789999888887666667778899999
Q ss_pred eEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEcCCC--CCccCcEEecCC
Q psy5461 125 GAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLK--RERGKDKRTRVI 185 (221)
Q Consensus 125 G~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~~Gdtl~~~~ 185 (221)
|+|++||+|.+...++..+|++|.... .++++|.|||++++...+ +++.||+++...
T Consensus 268 G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~ 326 (434)
T 1zun_B 268 GIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHAD 326 (434)
T ss_dssp SCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETT
T ss_pred ceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCC
Confidence 999999999999888888999998553 379999999999876543 578999999763
No 31
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.23 E-value=1.2e-12 Score=119.72 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=109.2
Q ss_pred CCCceeeeeeeeccc-ccCCcchHHHHhhcccc---ccCceeEecCCCccccHHHHHHHHHhhCCCC--CCcccccccCC
Q psy5461 23 FGDSLCARAFKVVHD-KHRGAVTFFRIYSGAFK---KNHVPVLCGSSYKNIGVQKLMDAIVDILPSP--TERPALAMFQH 96 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d-~~~g~l~~~~l~~~~~~---~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP--~~~~~~~~~~~ 96 (221)
.+-|.+..++|++.. +..-+.....+.+.... -...|++..||++|.||++|++.|.+.+|.| .. +
T Consensus 124 ~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~--------~ 195 (482)
T 1wb1_A 124 FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR--------N 195 (482)
T ss_dssp TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC--------C
T ss_pred cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc--------c
Confidence 345778889996432 11112222333322111 1257899999999999999999999988755 32 3
Q ss_pred CCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEE--cCCC-
Q psy5461 97 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV--TGLK- 173 (221)
Q Consensus 97 ~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 173 (221)
.++||.+.|..++..++.|+++.+||.+|++++||.+.....+...+|++|... ..++++|.|||.+++ .|++
T Consensus 196 ~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~ 271 (482)
T 1wb1_A 196 TESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDA 271 (482)
T ss_dssp SSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCS
T ss_pred ccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCH
Confidence 456887777777777889999999999999999999999887777899998743 346899999999865 4764
Q ss_pred -CCccCcEEe
Q psy5461 174 -RERGKDKRT 182 (221)
Q Consensus 174 -~~~~Gdtl~ 182 (221)
+++.||+++
T Consensus 272 ~~i~~Gdvl~ 281 (482)
T 1wb1_A 272 KQIYRGXILT 281 (482)
T ss_dssp SCCCSSCBCC
T ss_pred hhccccceEe
Confidence 679999993
No 32
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.87 E-value=5.1e-09 Score=85.37 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=68.0
Q ss_pred CCCCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEE--cCCC-
Q psy5461 97 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV--TGLK- 173 (221)
Q Consensus 97 ~~~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 173 (221)
.++||++.|-.++. +.|++..+||.+|++++||+|.+...+.+.+|++|+.. .+++++|.|||.+++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~----~~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSD----DVETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSS----SSCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEEC----CEEeEEECCCCEEEEEEcCCCH
Confidence 35899999988865 57999999999999999999999988888899999743 257899999999976 7775
Q ss_pred -CCccCcEEecC
Q psy5461 174 -RERGKDKRTRV 184 (221)
Q Consensus 174 -~~~~Gdtl~~~ 184 (221)
+++.||++++.
T Consensus 77 ~di~rG~vl~~~ 88 (204)
T 3e1y_E 77 EEILPGFILCDP 88 (204)
T ss_dssp SCCCTTCEEBCS
T ss_pred HHCccceEEECC
Confidence 68999999975
No 33
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.69 E-value=0.00048 Score=50.65 Aligned_cols=76 Identities=17% Similarity=0.059 Sum_probs=53.6
Q ss_pred CcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCC-ceeeeceeEeeecCCeeeeCccccCCEEE--EcCCC-CC
Q psy5461 100 SLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLD-QSEQITRLLLAEADDYKEVNEIQCGNIAA--VTGLK-RE 175 (221)
Q Consensus 100 ~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~-~~~~v~~i~~~~g~~~~~v~~a~aGdIv~--i~gl~-~~ 175 (221)
|....|..+..-=+ |.+..+||.+|+|++|+.| ..+ ...+|.+|. + ..+++++|.+||-|+ |.|.. ++
T Consensus 34 P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE-~---~~e~v~eA~~GdnVai~Ikg~~~~I 105 (116)
T 1xe1_A 34 AGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIE-R---NREKVEFAIAGDRIGISIEGKIGKV 105 (116)
T ss_dssp SEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEE-E---TTEEESEEETTCEEEEEEESCCCCC
T ss_pred cEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEE-E---CCcCcCCcCCCCEEEEEEECCcccc
Confidence 44444444222223 8899999999999999999 233 345666665 2 356899999999996 45644 78
Q ss_pred ccCcEEec
Q psy5461 176 RGKDKRTR 183 (221)
Q Consensus 176 ~~Gdtl~~ 183 (221)
+.||++..
T Consensus 106 ~~GdVLyv 113 (116)
T 1xe1_A 106 KKGDVLEI 113 (116)
T ss_dssp CTTCEEEE
T ss_pred CCCcEEEE
Confidence 99999864
No 34
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.50 E-value=2.2e-05 Score=72.72 Aligned_cols=67 Identities=27% Similarity=0.489 Sum_probs=49.9
Q ss_pred ChhhhhcCCCCCCCCccccc-cCCCCceeeeeeeeccc---ccCCcchHHHHhhccccccCceeEecCCCcc
Q psy5461 1 MDAIVDILPSPTERPALAMF-QHFGDSLCARAFKVVHD---KHRGAVTFFRIYSGAFKKNHVPVLCGSSYKN 68 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~~-~~~~~~~~~~vfk~~~d---~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~ 68 (221)
||++++|+|+|.+++..... .+.++||+++|||+..| ++.|++++.|+++|+++.+.. |++.+..+.
T Consensus 286 Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~-v~~~~~~~~ 356 (548)
T 3vqt_A 286 LDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMR-LKHHRTGKD 356 (548)
T ss_dssp HHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCE-EEETTTTEE
T ss_pred HHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCE-EEeeccccc
Confidence 68999999999887654332 34578999999999766 899999999999999998665 766555443
No 35
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.31 E-value=6.5e-05 Score=71.53 Aligned_cols=61 Identities=38% Similarity=0.651 Sum_probs=51.0
Q ss_pred ChhhhhcCCCCCCCCccccc------------cCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEe
Q psy5461 1 MDAIVDILPSPTERPALAMF------------QHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLC 62 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~~------------~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~ 62 (221)
||++++++|+|.+++.+... .++++|++++|||+..|++.|.+++.|+++|+++.+.. |++
T Consensus 282 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~-v~~ 354 (709)
T 4fn5_A 282 LDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDS-VLN 354 (709)
T ss_dssp HHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCB-CBC
T ss_pred HHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCE-EEE
Confidence 68999999999998764321 25689999999999999999999999999999887654 443
No 36
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.17 E-value=7.4e-05 Score=71.13 Aligned_cols=63 Identities=38% Similarity=0.672 Sum_probs=50.6
Q ss_pred ChhhhhcCCCCCCCCccc------------cccCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecC
Q psy5461 1 MDAIVDILPSPTERPALA------------MFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGS 64 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~------------~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gS 64 (221)
||++++++|+|.+++.+. ...+.+.|++++|||+..|++.|.+++.|+++|+++.+.. |+..+
T Consensus 279 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~-v~~~~ 353 (704)
T 2rdo_7 279 LDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDT-VLNSV 353 (704)
T ss_pred HHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCE-EEeCC
Confidence 689999999998864321 1124678999999999999999999999999999988665 55544
No 37
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.15 E-value=0.00011 Score=69.92 Aligned_cols=62 Identities=37% Similarity=0.629 Sum_probs=50.5
Q ss_pred ChhhhhcCCCCCCCCccc----------cccCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEec
Q psy5461 1 MDAIVDILPSPTERPALA----------MFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCG 63 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~----------~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~g 63 (221)
||++++++|+|.+++.+. ...+.+.|++++|||+..|++.|.+++.|+++|+++.+.. |++.
T Consensus 273 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~-v~~~ 344 (691)
T 1dar_A 273 LDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSY-VYNT 344 (691)
T ss_dssp HHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCE-EEET
T ss_pred HHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCE-EEec
Confidence 589999999999875431 1124688999999999999999999999999999988665 5544
No 38
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.08 E-value=9.3e-05 Score=70.31 Aligned_cols=62 Identities=35% Similarity=0.564 Sum_probs=50.2
Q ss_pred ChhhhhcCCCCCCCCccc------------cccCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEec
Q psy5461 1 MDAIVDILPSPTERPALA------------MFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCG 63 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~------------~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~g 63 (221)
||++++++|+|.+++.+. ...+.++||+++|||+..|++.|++++.|+++|+++.+.. |++.
T Consensus 271 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~-v~~~ 344 (693)
T 2xex_A 271 LDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSY-VKNS 344 (693)
T ss_dssp HHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEE-EEET
T ss_pred HHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCE-EEec
Confidence 689999999999864431 1124678999999999999999999999999999988654 5543
No 39
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.98 E-value=0.00021 Score=65.87 Aligned_cols=67 Identities=27% Similarity=0.411 Sum_probs=51.5
Q ss_pred ChhhhhcCCCCCCCCccccc-cCCCCceeeeeeeecc--cc-cCCcchHHHHhhccccccCceeEecCCCcc
Q psy5461 1 MDAIVDILPSPTERPALAMF-QHFGDSLCARAFKVVH--DK-HRGAVTFFRIYSGAFKKNHVPVLCGSSYKN 68 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~~-~~~~~~~~~~vfk~~~--d~-~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~ 68 (221)
||++++++|+|.++...... ...+++++++|||+.+ |+ +.|++++.|+++|+++.+.. +++....+.
T Consensus 268 ld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~-v~~~~~~~~ 338 (528)
T 3tr5_A 268 LDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMK-AYHVRLKKE 338 (528)
T ss_dssp HHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEE-EEETTTTEE
T ss_pred HHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCE-EEecCCCce
Confidence 57899999999987653322 2347899999999974 88 99999999999999998665 666554433
No 40
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.83 E-value=0.0029 Score=45.24 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=58.8
Q ss_pred EEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCc---eeeeceeEeeecCCeeeeCccccCCEEEE--cCCCCCccC
Q psy5461 104 RAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQ---SEQITRLLLAEADDYKEVNEIQCGNIAAV--TGLKRERGK 178 (221)
Q Consensus 104 ~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~---~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~G 178 (221)
.|-++...+..|.+|=++|.+|.++.+..+++.+.+. ..++.+|..+ ...++++.+|.=|.| .+.++++.|
T Consensus 10 eVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~----KddV~EV~~G~ECGi~l~~~~dik~G 85 (99)
T 1d1n_A 10 EVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRY----KDDVREVAQGYECGLTIKNFNDIKEG 85 (99)
T ss_dssp EECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECS----SSCCSCCBTTCEEEEECTTCSSCSSC
T ss_pred EEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhccc----ccccceECCCcEEEEEEcCcCCCCCC
Confidence 3444444467799999999999999999999998874 3467776644 346899999999966 466789999
Q ss_pred cEEe
Q psy5461 179 DKRT 182 (221)
Q Consensus 179 dtl~ 182 (221)
|+|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9984
No 41
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.76 E-value=8.2e-05 Score=72.17 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=47.5
Q ss_pred ChhhhhcCCCCCCCCcccc-----------------ccCCCCceeeeeeeecccccCCc-chHHHHhhccccccCc
Q psy5461 1 MDAIVDILPSPTERPALAM-----------------FQHFGDSLCARAFKVVHDKHRGA-VTFFRIYSGAFKKNHV 58 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~-----------------~~~~~~~~~~~vfk~~~d~~~g~-l~~~~l~~~~~~~~~~ 58 (221)
||+|++++|||.+++.+.. ..++++|++++|||+..|++.|+ +++.|+++|+++.+..
T Consensus 335 Ld~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~ 410 (842)
T 1n0u_A 335 LEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQK 410 (842)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCE
T ss_pred HHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCE
Confidence 6899999999987542210 12568899999999999999996 9999999999887654
No 42
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.76 E-value=8.3e-06 Score=73.25 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=84.0
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCCcccccccCCCCCCcE
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPALAMFQHFGDSLC 102 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~~~~~~~~~~~~~~~~ 102 (221)
.+.|++..++|++....... ...+...+...+|++..||++|.|+++|++.|.+.+|.+.+.+... ..-..+.+.
T Consensus 139 ~~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~~e~~l~~-dLv~~gd~v 213 (423)
T 3qq5_A 139 MEIPFVVVVNKIDVLGEKAE----ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPYLG-DLIDGGDLV 213 (423)
T ss_dssp TTCCEEEECCCCTTTTCCCT----HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCCCCCCSCS-CCCCTTCCE
T ss_pred cCCCEEEEEeCcCCCCccHH----HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhhccCcchh-hccccCceE
Confidence 46799999999653332222 2233333444568999999999999999999999997762221000 011234455
Q ss_pred EEEEEEeecCCCc--------------------eEEEEEEEceEEc---CCCEEEeccCCceeeeceeEeeecCCeeeeC
Q psy5461 103 ARAFKVVHDKHRG--------------------AVTFFRIYSGAFK---KGQKFYNIHLDQSEQITRLLLAEADDYKEVN 159 (221)
Q Consensus 103 ~~Vfk~~~d~~~G--------------------~i~~~RV~sG~L~---~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 159 (221)
+.|..+......| .++..|.+.++|+ ....+....++...+|..+ .++..+..
T Consensus 214 ~lv~pid~~~pkgr~ilp~~~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv~tdsq~~~~v~~~----~p~~~~~t 289 (423)
T 3qq5_A 214 ILVVPIDLGAPKGRLIMPQVHAIREALDREAIALVVKERELRYVMENIGMKPKLVITDSQVAMKVASD----VPEDVELT 289 (423)
T ss_dssp EEECCCSCCSSTTCCCHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCCCBCTTHHHHHHHT----CCCSSSCC
T ss_pred EEEeeccccCcCCccccchHHHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEEEeccHHHHHHhcc----CCCCCCcc
Confidence 5555444333223 3333333344432 2233333333322233322 23334444
Q ss_pred cccc------CCEE-EEcC---CCCCccCcEEecC
Q psy5461 160 EIQC------GNIA-AVTG---LKRERGKDKRTRV 184 (221)
Q Consensus 160 ~a~a------GdIv-~i~g---l~~~~~Gdtl~~~ 184 (221)
+... ||+. .++| +++++.|||+...
T Consensus 290 ~~s~l~a~~kG~~~~~~~g~~~~~~~~~gd~v~~~ 324 (423)
T 3qq5_A 290 TFSIVESRYRGDLAYFVESVRKIEELEDGDTVVIM 324 (423)
T ss_dssp CBHHHHHHHSSCSHHHHHHHHTTTTCCTTCEEEEE
T ss_pred cHHHHhhccCCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 4444 9998 3444 6688999999654
No 43
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.50 E-value=0.0089 Score=44.15 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=57.8
Q ss_pred EEEEEEEeecCCCce---EEEEEEEceEEcCCCEEEeccCCce---eeeceeEeeecCCeeeeCccccCCEEEE--cCCC
Q psy5461 102 CARAFKVVHDKHRGA---VTFFRIYSGAFKKGQKFYNIHLDQS---EQITRLLLAEADDYKEVNEIQCGNIAAV--TGLK 173 (221)
Q Consensus 102 ~~~Vfk~~~d~~~G~---i~~~RV~sG~L~~gd~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~ 173 (221)
+-.||++- ..|+ +|=++|.+|.++.+..+++.+.+.. .++.+|.++ ...++++.+|.=|.| .+.+
T Consensus 15 Vr~vF~is---k~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrf----KdDVkEV~~G~ECGi~l~~fn 87 (120)
T 2crv_A 15 ILATFTVT---EGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHH----KDDISVIKTGMDCGLSLDEEK 87 (120)
T ss_dssp EEEEEEEE---ETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESS----SSCCSEECTTCEEEEECSCTT
T ss_pred EeEEEEeC---CCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhccc----ccccceecCCCEEEEEEccCC
Confidence 44566653 4466 9999999999999999999988742 366666543 346899999999965 4677
Q ss_pred -CCccCcEEec
Q psy5461 174 -RERGKDKRTR 183 (221)
Q Consensus 174 -~~~~Gdtl~~ 183 (221)
+++.||+|-.
T Consensus 88 iDik~GDiIE~ 98 (120)
T 2crv_A 88 VEFKPGDQVIC 98 (120)
T ss_dssp SCCCTTEEEEE
T ss_pred CCCCCCCEEEE
Confidence 8999999843
No 44
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.27 E-value=0.0011 Score=60.95 Aligned_cols=64 Identities=27% Similarity=0.443 Sum_probs=48.6
Q ss_pred ChhhhhcCCCCCCCCccc-cccCCCCceeeeeeeecc---cccCCcchHHHHhhccccccCceeEecCC
Q psy5461 1 MDAIVDILPSPTERPALA-MFQHFGDSLCARAFKVVH---DKHRGAVTFFRIYSGAFKKNHVPVLCGSS 65 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~-~~~~~~~~~~~~vfk~~~---d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa 65 (221)
||++++++|+|.++.... .....+++|+++|||+.. +++.|++++.|+++|+++.+.. |++...
T Consensus 269 Ld~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~-v~~~~~ 336 (529)
T 2h5e_A 269 LDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMK-LRQVRT 336 (529)
T ss_dssp HHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCE-EEETTT
T ss_pred HHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCE-EEEeeC
Confidence 588999999998764311 111236899999999975 4789999999999999998665 665443
No 45
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.21 E-value=0.00095 Score=62.77 Aligned_cols=50 Identities=28% Similarity=0.519 Sum_probs=43.3
Q ss_pred ChhhhhcCCCCCCCCccccccCCCCceeeeeeeecccccCCcchHHHHhhccccccCc
Q psy5461 1 MDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHV 58 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~ 58 (221)
||++++++|+|.++ .+.+++++|||+..|++.|.+++.|+++|+++.+..
T Consensus 230 Ld~i~~~~p~p~~~--------~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~ 279 (638)
T 3j25_A 230 IEVITNKFYSSTHR--------GPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDS 279 (638)
T ss_dssp HHHHHHSCCCSGGG--------SCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCC
T ss_pred hhhhhccccCcccc--------hhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCc
Confidence 58899999999653 457899999999999999999999999999876543
No 46
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.20 E-value=0.083 Score=48.19 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=58.2
Q ss_pred EEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCce---eeeceeEeeecCCeeeeCccccCCEEEE--cCCCCCccC
Q psy5461 104 RAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQS---EQITRLLLAEADDYKEVNEIQCGNIAAV--TGLKRERGK 178 (221)
Q Consensus 104 ~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~~~~G 178 (221)
.|-++...+..|.++=++|..|++++|..+++.+.+.. .++.+|.. ....++++..|.-|+| .+..+++.|
T Consensus 412 ~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~----~k~~v~e~~~g~ecgi~~~~~~~~~~g 487 (501)
T 1zo1_I 412 EVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRR----FKDDVNEVRNGMECGIGVKNYNDVRTG 487 (501)
T ss_dssp EEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEE----TTEEESEEETTCCEEEEBCCCTTCCTT
T ss_pred EEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcc----cCccccEECCCCEEEEEEcCcCCCCCC
Confidence 34444444566899999999999999999999987753 35555543 4568999999999975 466789999
Q ss_pred cEEec
Q psy5461 179 DKRTR 183 (221)
Q Consensus 179 dtl~~ 183 (221)
|.|-.
T Consensus 488 d~~~~ 492 (501)
T 1zo1_I 488 DVIEV 492 (501)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99854
No 47
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.70 E-value=0.28 Score=45.10 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=57.8
Q ss_pred EEEEEEEeecC---CCceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEEc--C-CCCC
Q psy5461 102 CARAFKVVHDK---HRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVT--G-LKRE 175 (221)
Q Consensus 102 ~~~Vfk~~~d~---~~G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i~--g-l~~~ 175 (221)
.|.|-++..-+ ..|.+|=|+|..|+++++..+++.+.+.....+.|..++ +....++++..|.=|+|. + ..++
T Consensus 449 ~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~~~~ 527 (537)
T 3izy_P 449 EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK-HHKDDTSVVKTGMDCGLSLDEEKIEF 527 (537)
T ss_dssp EEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC-CSSCCCSEEETTCEEEEESSSSCSSC
T ss_pred EEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc-ccCcccceEcCCCEEEEEEcCcccCC
Confidence 34444444333 257899999999999999999999987543333333332 345679999999999764 5 6689
Q ss_pred ccCcEEe
Q psy5461 176 RGKDKRT 182 (221)
Q Consensus 176 ~~Gdtl~ 182 (221)
+.||+|-
T Consensus 528 ~~gd~ie 534 (537)
T 3izy_P 528 KVGDAII 534 (537)
T ss_dssp SCCCEEE
T ss_pred CCCCEEE
Confidence 9999984
No 48
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.38 E-value=0.0028 Score=59.87 Aligned_cols=51 Identities=37% Similarity=0.630 Sum_probs=43.8
Q ss_pred ChhhhhcCCCCCCCCccccccCCCCceeeeeeeecccccCCcchHHHHhhccccccCc
Q psy5461 1 MDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHV 58 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~ 58 (221)
||++++++|+|.+. +.+.|++++|||+..|++.|.+++.|+++|+++.+..
T Consensus 265 l~~i~~~lp~p~~~-------~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~ 315 (665)
T 2dy1_A 265 LELILEALPSPTER-------FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDS 315 (665)
T ss_dssp HHHHHHHSCCHHHH-------HCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEE
T ss_pred HHHHHHhCCCcccc-------CCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCE
Confidence 57889999999653 1567999999999999999999999999999887654
No 49
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.17 E-value=0.028 Score=44.38 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=41.9
Q ss_pred CCCceeeeeeeeccccc-CCcchHHHHhhcccc------ccCceeEecCCCccccHHHHHHHHHhhCCCCCC
Q psy5461 23 FGDSLCARAFKVVHDKH-RGAVTFFRIYSGAFK------KNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTE 87 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~-~g~l~~~~l~~~~~~------~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~ 87 (221)
.+.|++..++|++.... ........+.+.... ....|++..||++|.||++|++.|.+.+|.+..
T Consensus 143 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 143 TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 46788899999653221 111122333333322 356799999999999999999999999987653
No 50
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.94 E-value=0.057 Score=41.25 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=42.0
Q ss_pred CCCceeeeeeeeccc-ccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHD-KHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d-~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.. +..-+.....+.+........|++..||++|.||++|++.|.+.++
T Consensus 132 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 467889999996532 2212333344444333334578999999999999999999988765
No 51
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.14 Score=39.05 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=41.1
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhc----cccccCceeEecCCCccccHHHHHHHHHhhCCCCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSG----AFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTE 87 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~----~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~ 87 (221)
.+.|++...+|.+... +.....+.+. ..+...++++..||++|.||+++++.|.+.++.+..
T Consensus 116 ~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp TTCEEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred CCCeEEEEEECCCCcC---CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 4678899999965332 1222222221 123345689999999999999999999998877644
No 52
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.34 E-value=0.084 Score=39.71 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=40.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.......+....+..-.......|++..||++|.||+++++.|.+.+
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 456888999996542222233343333322223456899999999999999999998754
No 53
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.24 E-value=0.097 Score=39.57 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=41.9
Q ss_pred CCceeeeeeeecccccC-----------CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCC
Q psy5461 24 GDSLCARAFKVVHDKHR-----------GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTE 87 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~-----------g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~ 87 (221)
+.|++...+|.+..... -.+...............|++..||++|.||++|++.|.+.++.|..
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 66888889996532210 12222222222222233489999999999999999999998876643
No 54
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.23 E-value=0.11 Score=38.90 Aligned_cols=59 Identities=10% Similarity=-0.039 Sum_probs=41.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.. ..++..+.+.+........|++..||++|.||+++++.|.+.+.
T Consensus 115 ~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 115 ESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456888999996533 23344444444333244678999999999999999999987653
No 55
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.09 E-value=0.051 Score=41.09 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCceeeeeeeecccccCC---------cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRG---------AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g---------~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|.+...... .++.....+-.......|++..||++|.||+++++.|.+.+..|
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 568888889965322211 12333332222222335899999999999999999999876544
No 56
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.04 E-value=0.12 Score=38.27 Aligned_cols=59 Identities=14% Similarity=-0.020 Sum_probs=39.6
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++.... -++..+.+.+-.......|++..||++|.||++|++.|.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDE-RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp SCCCEEEEEECTTCGGG-CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccc-ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 36788899999653322 223333333322222357899999999999999999998754
No 57
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.04 E-value=0.14 Score=38.61 Aligned_cols=60 Identities=17% Similarity=0.009 Sum_probs=40.7
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|.+.... .++..+.+.+... ....|++..||++|.||++|++.|.+.++..
T Consensus 117 ~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 117 NMVMALAGNKSDLLDA-RKVTAEDAQTYAQ-ENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TCEEEEEEECTTCTTT-CCSCHHHHHHHHH-HTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred CCcEEEEEECCccccc-ccCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5678888899653222 2344444433222 2346899999999999999999999988764
No 58
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.91 E-value=0.12 Score=39.56 Aligned_cols=61 Identities=13% Similarity=-0.037 Sum_probs=40.9
Q ss_pred CCCceeeeeeeecccccC-CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHR-GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~-g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+..... -......+.+........|++..||++|.||++|++.|.+.++
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 467889999996532211 1112234444333334678999999999999999999987653
No 59
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.79 E-value=0.16 Score=37.36 Aligned_cols=55 Identities=25% Similarity=0.204 Sum_probs=37.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.... + ..+.+.. +.+..|++..||++|.|++++++.|.+.+|
T Consensus 107 ~~~p~ilv~nK~Dl~~~--~---~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKH--E---LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp HTCCEEEEEECCCSGGG--G---GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred cCCCEEEEEECcccccc--h---HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 35688888899653322 1 1111111 222337899999999999999999999876
No 60
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.72 E-value=0.2 Score=38.39 Aligned_cols=62 Identities=8% Similarity=-0.057 Sum_probs=39.6
Q ss_pred CCCceeeeeeeecccccCC-cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRG-AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g-~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|.+...... +-....+..........+++..||++|.||++|++.|.+.+..
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678899999965332211 1111111111222345789999999999999999999987754
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.70 E-value=0.099 Score=38.79 Aligned_cols=58 Identities=14% Similarity=-0.036 Sum_probs=38.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+-|++...+|.+.... .++..+...... .....|++..||++|.||+++++.|.+.+
T Consensus 105 ~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 105 DDVPIILVGNKSDLVRS-REVSVDEGRACA-VVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp -CCCEEEEEECTTCCSS-CCSCHHHHHHHH-HHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccccccc-cccCHHHHHHHH-HHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 45688999999654322 233333332222 22246899999999999999999998753
No 62
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.69 E-value=0.23 Score=36.61 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=38.4
Q ss_pred CCceeeeeeeecccccCCcchHHHHhh----ccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYS----GAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~----~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+.... .....+.+ ...+...+|++..||++|.||+++++.|.+.++
T Consensus 101 ~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 101 DAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 6688899999654322 11122222 122234578999999999999999999998764
No 63
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.66 E-value=0.13 Score=38.00 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=38.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+-+++...+|.+.... .++......+.. +....|++..||++|.||++|++.|.+.++
T Consensus 111 ~~~iilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 111 NIVIALSGNKADLANK-RAVDFQEAQSYA-DDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TCEEEEEEECGGGGGG-CCSCHHHHHHHH-HHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred CCcEEEEEECccCccc-cccCHHHHHHHH-HHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 4566777789653322 233333333322 223468999999999999999999998875
No 64
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.63 E-value=0.13 Score=39.18 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=40.8
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++... +...+.+.+........|++..||++|.||+++++.|.+.+
T Consensus 134 ~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TSSCEEEEEECTTSTT---CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCCCEEEEEEchhccc---ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 4668889999965332 24555555444444444899999999999999999988754
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.14 Score=38.02 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=40.1
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|.+.... .++......... +....|++..||++|.||+++++.|.+.+...
T Consensus 109 ~~pii~v~nK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 109 SIPIMLVGNKCDESPS-REVQSSEAEALA-RTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp CCCEEEEEECGGGGGG-CCSCHHHHHHHH-HHHTCEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred CCCEEEEEEccccccc-cccCHHHHHHHH-HHhCCeEEEecCCCCcCHHHHHHHHHHHHhhh
Confidence 5688899999653222 122222222211 22236899999999999999999999987653
No 66
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.60 E-value=0.13 Score=39.80 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=40.2
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+.. ..+.....+..-.......|++..||++|.||++|++.|.+.++
T Consensus 117 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 117 NFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp GSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55888889996433 22333344333332244578999999999999999999988764
No 67
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.57 E-value=0.16 Score=37.68 Aligned_cols=59 Identities=15% Similarity=0.021 Sum_probs=38.4
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.-+++...+|.+.... .++..+.... ..+....|++..||++|.|+++|++.|.+.++.
T Consensus 111 ~~~iilv~nK~Dl~~~-~~v~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 111 SIVVAIAGNKCDLTDV-REVMERDAKD-YADSIHAIFVETSAKNAININELFIEISRRIPS 169 (170)
T ss_dssp TSEEEEEEECTTCGGG-CCSCHHHHHH-HHHHTTCEEEECBTTTTBSHHHHHHHHHHHCCC
T ss_pred CCcEEEEEECCccccc-cccCHHHHHH-HHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence 4567777788653221 1233333222 222234689999999999999999999988763
No 68
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.21 Score=38.42 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=41.1
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|.+.... .++..+.+.+.. +....|++..||++|.||++|++.|.+.++..
T Consensus 128 ~~piiiv~NK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDI-REVPLKDAKEYA-ESIGAIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TCEEEEEEECGGGGGG-CCSCHHHHHHHH-HTTTCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred CCcEEEEEECcccccc-cccCHHHHHHHH-HHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 5688888999654321 233344443332 22346899999999999999999999988653
No 69
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=92.50 E-value=0.74 Score=42.76 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=51.1
Q ss_pred ceEEEEEEEceEEcCCCEEEeccCCceeeeceeEeeecCCeeeeCccccCCEEEE--cCC---CCCccCcEEecCC
Q psy5461 115 GAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAV--TGL---KRERGKDKRTRVI 185 (221)
Q Consensus 115 G~i~~~RV~sG~L~~gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~~Gdtl~~~~ 185 (221)
|.++=++|..|++++|..+++ +.+. ..+.|..++ +....++++..|.-|+| .|. .+++.||.|....
T Consensus 479 ~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~-~~k~~v~~~~~g~e~gi~~~~~~~~~~~~~~d~~~~~~ 550 (594)
T 1g7s_A 479 PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQ-DKGENLKSASRGQKVAMAIKDAVYGKTIHEGDTLYVDI 550 (594)
T ss_dssp SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEE-ETTEEESEEETTCCEEEEEETCCBTTTBCTTCEEEECC
T ss_pred CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhc-ccCccccccCCCCEEEEEEeCcccCCCCCCCCEEEEEE
Confidence 799999999999999999998 4443 344444343 24568999999999965 454 5899999997653
No 70
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.29 E-value=0.25 Score=38.08 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=39.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccc-----------cccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAF-----------KKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~-----------~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++... +...+.+.+... +....+++..||++|.||+++++.|.+.+
T Consensus 123 ~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp TTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 4678999999964332 344444443221 12356899999999999999999998653
No 71
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.90 E-value=0.18 Score=37.39 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=39.2
Q ss_pred CCCceeeeeeeecccccCC-cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRG-AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g-~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+...... +-....+.........+|++..||++|.||+++++.|.+.++
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 4678899999965332211 111112212223334568999999999999999999987654
No 72
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.89 E-value=0.28 Score=38.09 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=39.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcccc----------------ccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFK----------------KNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~----------------~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++... ++..+.+.+.... ....+++..||++|.||+++++.|.+.+
T Consensus 125 ~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 125 ANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999965432 3344444332110 1346899999999999999999998754
No 73
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.81 E-value=0.2 Score=38.57 Aligned_cols=59 Identities=15% Similarity=0.015 Sum_probs=39.6
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... .++..+.+.+........+++..||++|.||+++++.|.+.+
T Consensus 130 ~~~piilV~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 130 EDAELLLVGNKLDCETD-REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp TTCEEEEEEECGGGGGG-CCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccc-cccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35688999999754332 233333333322221356899999999999999999998654
No 74
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.81 E-value=0.13 Score=39.57 Aligned_cols=61 Identities=7% Similarity=-0.042 Sum_probs=39.6
Q ss_pred CCceeeeeeeecccccC-----------CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHR-----------GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~-----------g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+.|++...+|.+..... -.+..+...+...+....|++..||++|.||+++++.|.+.+..
T Consensus 122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 66888899996532210 12333333332222233489999999999999999999876544
No 75
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.75 E-value=0.39 Score=36.60 Aligned_cols=58 Identities=19% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcc----ccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.+++...+|++... +.....+.+.. .....++++..||++|.||++|++.|.+.+-
T Consensus 125 ~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 125 RRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp SCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 4678889999965332 22223332222 2223578999999999999999999988763
No 76
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.70 E-value=0.25 Score=37.51 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=37.4
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhc----cccccCceeEecCCCccccHHHHHHHHHhh
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSG----AFKKNHVPVLCGSSYKNIGVQKLMDAIVDI 81 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~----~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~ 81 (221)
.+.|++...+|.+... +.....+.+. ......++++..||++|.||+++++.|.+.
T Consensus 121 ~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 121 RKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CCCeEEEEEECCCccc---CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 4678889999965322 1222222221 123345689999999999999999999864
No 77
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.63 E-value=0.28 Score=41.46 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=40.0
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcccc-ccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFK-KNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~-~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++..++|++... ..+.....+..-... +...+++..||++|.|+++|++.|..++|.
T Consensus 121 ~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 121 LNKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp GCCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred cCCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 4578999999965321 112222111111111 134689999999999999999999999975
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.59 E-value=0.17 Score=39.49 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCceeeeeeeecccccC-----------CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHR-----------GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~-----------g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|++..... -.+...............|++..||++|.||+++++.|.+.+
T Consensus 134 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 67888999997532211 013333333333333456899999999999999999998753
No 79
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.50 E-value=0.19 Score=37.11 Aligned_cols=60 Identities=10% Similarity=-0.072 Sum_probs=39.5
Q ss_pred CCCceeeeeeeeccccc--CCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKH--RGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~--~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.... ..++........ .+....|++..||++|.||+++++.|.+.++
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 107 KDIIIALVGNKIDXLQEGGERKVAREEGEKL-AEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TTCEEEEEEECGGGGGSSCCCCSCHHHHHHH-HHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred CCCcEEEEEECCCccccccccCCCHHHHHHH-HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 35678888899753221 123333332222 2222458999999999999999999998765
No 80
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.27 E-value=0.19 Score=37.53 Aligned_cols=60 Identities=15% Similarity=0.017 Sum_probs=39.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|.+.... .++.......... ....|++..||++|.|++++++.|.+.++.
T Consensus 118 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 118 SDVIIMLVGNKTDLSDK-RQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TSSEEEEEEECGGGGGG-CCSCHHHHHHHHH-HHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CCCcEEEEEECCccccc-CcCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 35678888999653322 2233333222222 224689999999999999999999988753
No 81
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.21 E-value=0.24 Score=37.38 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=39.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+... .....+.+..- .+....|++..||++|.||+++++.|.+.+.
T Consensus 108 ~~~p~i~v~nK~Dl~~--~~~~~~~~~~~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 108 EDVPMVLVGNKCDLPS--RTVDTKQAQDL-ARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp SCCCEEEEEECTTSSS--CSSCHHHHHHH-HHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCcc--cccCHHHHHHH-HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3678889999964332 22333332222 2222468999999999999999999988764
No 82
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.07 E-value=0.2 Score=37.18 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=39.1
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+-|++...+|.+.... .++......+.. +....|++..||++|.||+++++.|.+.+
T Consensus 109 ~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 109 DLPVILVGNKSDLARS-REVSLEEGRHLA-GTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp CCCEEEEEECTTCGGG-CCSCHHHHHHHH-HHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeeCcchhhc-ccCCHHHHHHHH-HHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 6789999999654322 234444433322 22245899999999999999999998753
No 83
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.03 E-value=0.15 Score=38.25 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=38.1
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+.... ..+......... .....|++..||++|.||++|++.|.+.+.
T Consensus 113 ~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 113 DVCRILVGNKNDDPER-KVVETEDAYKFA-GQMGIQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp TSEEEEEEECTTCGGG-CCSCHHHHHHHH-HHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchh-cccCHHHHHHHH-HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688888899653322 122323322222 222358999999999999999999987654
No 84
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.02 E-value=0.2 Score=38.08 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|++ ...-+.....+.+-..+ ...|++..||++|.||+++++.|.+.+
T Consensus 147 ~~piilv~NK~D--~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 147 NYIIILVANKID--KNKFQVDILEVQKYAQD-NNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CCEEEEEEECTT--CC-CCSCHHHHHHHHHH-TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEECCC--cccccCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 368888889965 22224444444443333 345899999999999999999987654
No 85
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.99 E-value=0.43 Score=36.74 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=38.7
Q ss_pred CCceeeeeeeecccccCCcchHHHHhh----ccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYS----GAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~----~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|++.... .....+.+ ...+...+|++..||++|.||+++++.|.+.+.
T Consensus 130 ~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 130 DAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 6788999999654322 11222222 122234578999999999999999999988763
No 86
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.95 E-value=0.25 Score=38.41 Aligned_cols=61 Identities=11% Similarity=-0.116 Sum_probs=41.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|.+.... .++..+.+.+........+++..||++|.||+++++.|.+.+..
T Consensus 133 ~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 133 SNIVQLLIGNKSDLSEL-REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTCEEEEEEECTTCGGG-CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccc-cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45688888899654322 23444444433333333389999999999999999999887753
No 87
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.88 E-value=0.17 Score=38.22 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcc----ccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++.... .....+.+.. ......|++..||++|.||+++++.|.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 118 QDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 46788999999653221 2222222221 223356899999999999999999998765
No 88
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.87 E-value=0.12 Score=37.97 Aligned_cols=58 Identities=17% Similarity=0.028 Sum_probs=38.4
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... .++......+-. +....|++..||++|.||++|++.|.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 107 EKVPVILVGNKVDLESE-REVSSSEGRALA-EEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp SCCCEEEEEECGGGGGG-CCSCHHHHHHHH-HHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccc-ccCCHHHHHHHH-HHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 36788999999753221 233333322221 22245899999999999999999998754
No 89
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.87 E-value=0.32 Score=37.13 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=39.1
Q ss_pred CCceeeeeeeecccccCC-cchHHHHhhccc-cccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRG-AVTFFRIYSGAF-KKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g-~l~~~~l~~~~~-~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+-|++...+|++...... +-....+..... +...++++..||++|.||+++++.|.+.+..
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 668899999965332211 111111111111 3356789999999999999999999887643
No 90
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.84 E-value=0.26 Score=37.02 Aligned_cols=59 Identities=8% Similarity=0.001 Sum_probs=39.7
Q ss_pred CCceeeeeeeeccc-ccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHD-KHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d-~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+-|++...+|.+.. ...-.+..+.+.+-.......|++..||++|.||+++++.|...+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 108 GLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp CCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 56888889996542 112234444443322222356899999999999999999998764
No 91
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.69 E-value=0.2 Score=38.21 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=38.2
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+.... .++....... ..+....|++..||++|.||+++++.|.+.+.
T Consensus 121 ~~p~ilv~nK~Dl~~~-~~~~~~~~~~-~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 121 NVNKLLVGNKCDLTTK-KVVDYTTAKE-FADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TCEEEEEEECTTCTTT-CCSCHHHHHH-HHHHTTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccc-cccCHHHHHH-HHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5688888899653322 2233333222 22223468999999999999999998887664
No 92
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.68 E-value=0.17 Score=38.79 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=38.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... -.+......... +....|++..||++|.||+++++.|.+.+
T Consensus 127 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEE-RVVPTEKGQLLA-EQLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp TTCEEEEEEECTTCGGG-CCSCHHHHHHHH-HHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccc-cccCHHHHHHHH-HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46688888999654322 123333332222 22245899999999999999999988764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.67 E-value=0.43 Score=36.30 Aligned_cols=59 Identities=15% Similarity=-0.001 Sum_probs=38.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhc----cccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSG----AFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~----~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|.+..... ....+.+. .......+++..||++|.||+++++.|.+.+..
T Consensus 116 ~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred cCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 456889999996543321 11222221 122335689999999999999999999987753
No 94
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.65 E-value=0.2 Score=37.31 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=38.0
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|++.... -++..+...... .....|++..||++|.||++|++.|.+.+
T Consensus 111 ~~piilv~NK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 111 HVPIILVGNKADLARC-REVSVEEGRACA-VVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp -CCEEEEEECTTCTTT-CCSCHHHHHHHH-HHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhccc-cccCHHHHHHHH-HHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 6788999999654322 233333322211 12236899999999999999999998765
No 95
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.63 E-value=0.27 Score=37.73 Aligned_cols=60 Identities=3% Similarity=-0.045 Sum_probs=40.8
Q ss_pred CCCceeeeeeeeccc-ccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHD-KHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d-~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+-|++...+|.+.. ...-.+..+.+.+........+++..||++|.||+++++.|.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 356888888996542 122345554444433333346899999999999999999988653
No 96
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=90.63 E-value=0.28 Score=41.87 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=39.6
Q ss_pred CCceeeeeeeeccccc-CCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKH-RGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~-~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|++.... ..+-....+..........|++..||++|.||++|++.|.+.+.
T Consensus 266 ~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 266 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 6688999999653321 11111122222223345678999999999999999999988654
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.51 E-value=0.31 Score=37.12 Aligned_cols=60 Identities=18% Similarity=0.021 Sum_probs=38.7
Q ss_pred CCceeeeeeeecccccCC-cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRG-AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g-~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+...... +-....+.........+|++..||++|.||+++++.|.+.++
T Consensus 123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 578889999965332211 111111111222333568999999999999999999988764
No 98
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.49 E-value=0.22 Score=37.28 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=39.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|++.... .++........ ......+++..||++|.||+++++.|.+.+.
T Consensus 113 ~~~piilv~nK~Dl~~~-~~v~~~~~~~~-~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 113 DDFPVVLVGNKADLESQ-RQVPRSEASAF-GASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp SCCCEEEEEECGGGGGG-CCSCHHHHHHH-HHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccc-cccCHHHHHHH-HHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 35688899999654322 12333333222 2223468999999999999999999987764
No 99
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.48 E-value=0.2 Score=37.15 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=38.0
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|.+.... .++..+.+.+-. +....|++..||++|.||+++++.|.+.+
T Consensus 111 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 111 EICLCIVGNKIDLEKE-RHVSIQEAESYA-ESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GSEEEEEEECGGGGGG-CCSCHHHHHHHH-HHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCeEEEEEECcccccc-cccCHHHHHHHH-HHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 4577888889654322 233333333322 22236899999999999999999998765
No 100
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.39 E-value=0.34 Score=36.38 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=39.6
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|.+.... .++....+.+... ....|++..||++|.||+++++.|.+.+
T Consensus 123 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDK-RQVSVEEAKNRAE-QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp TCCEEEEEECGGGGGG-CCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccc-CccCHHHHHHHHH-HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 6788999999654322 1334444433322 2346899999999999999999998765
No 101
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.34 E-value=0.29 Score=37.11 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=39.4
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcc----ccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.... .....+.+.. .....+|++..||++|.||+++++.|.+.++
T Consensus 118 ~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp TTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46788999999653322 1222222221 2234568999999999999999999988764
No 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.99 E-value=0.22 Score=38.93 Aligned_cols=60 Identities=8% Similarity=-0.015 Sum_probs=40.7
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.+++...+|++.... .++....... ..+....|++..||++|.||+++++.|.+.+..-
T Consensus 117 ~~piilv~nK~Dl~~~-~~~~~~~~~~-~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 117 EAPIVVCANKIDIKNR-QKISKKLVME-VLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp SSCEEEEEECTTCC-----CCHHHHHH-HTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred CCCEEEEEECCCCccc-cccCHHHHHH-HHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 4688899999653321 2333333333 3333457899999999999999999999887553
No 103
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.96 E-value=0.23 Score=38.07 Aligned_cols=61 Identities=23% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCceeeeeeeeccccc-CCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKH-RGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~-~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+.|++...+|.+.... ..++..+.+.+........+++..||++|.||+++++.|.+.+..
T Consensus 127 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 5688888999753321 233444444433333333338999999999999999999887644
No 104
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.94 E-value=0.18 Score=38.52 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=38.5
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|++.... .++..+.+.+-. +...+|++..||++|.||++|++.|.+.++
T Consensus 127 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 127 NAQVILVGNKCDLEDE-RVVPAEDGRRLA-DDLGFEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp TCEEEEEEECTTCGGG-CCSCHHHHHHHH-HHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccc-cCCCHHHHHHHH-HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688888999653322 123333332222 222358999999999999999999987653
No 105
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.90 E-value=0.24 Score=36.36 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=38.9
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|.+.... .++....+...... ...|++..||++|.||+++++.|.+.+
T Consensus 109 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 109 NVPFLLVGNKSDLEDK-RQVSVEEAKNRADQ-WNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp TSCEEEEEECGGGGGG-CCSCHHHHHHHHHH-HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccc-CccCHHHHHHHHHH-cCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 6789999999654322 12333343332222 235899999999999999999998654
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=89.83 E-value=0.36 Score=43.24 Aligned_cols=59 Identities=10% Similarity=-0.075 Sum_probs=40.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhh----ccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYS----GAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~----~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|.+.... .....+.+ ........|++..||++|.||++|++.|.+.+..
T Consensus 422 ~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTCEEEEEEECCSSSSC---CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred CCCcEEEEEECCCCCcC---CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36789999999654322 12222222 2223345689999999999999999999988754
No 107
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.82 E-value=0.49 Score=36.04 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=39.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|.+... .++........ ......+++..||++|.||++|++.|.+.+...
T Consensus 114 ~~piilv~nK~Dl~~--~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 114 DIPVMLVGNKCDETQ--REVDTREAQAV-AQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp GSCEEEEEECTTCSS--CSSCHHHHHHH-HHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred CCCEEEEEECccCCc--cccCHHHHHHH-HHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 558889999965322 22333222221 122235899999999999999999999988654
No 108
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=89.80 E-value=1.8 Score=29.57 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=49.5
Q ss_pred CCcEEEEEEEeecCCCceEEEEEEEceEEcCCCEEEeccCCc---eeeeceeEeeecCCeeeeCcc-ccCCEEEEcCCCC
Q psy5461 99 DSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQ---SEQITRLLLAEADDYKEVNEI-QCGNIAAVTGLKR 174 (221)
Q Consensus 99 ~~~~~~Vfk~~~d~~~G~i~~~RV~sG~L~~gd~v~~~~~~~---~~~v~~i~~~~g~~~~~v~~a-~aGdIv~i~gl~~ 174 (221)
-.|++.|.... ...| .+.+. ....+..||.|.+..++. ..++.+|+ ..+-++++.| +||+++.|.--..
T Consensus 6 ~~fvG~V~~~~--~~~g-~~~ie-~rN~f~~GD~iEi~~P~g~~~~~~v~~m~---d~~G~~i~~A~~~~~~v~i~~~~~ 78 (89)
T 4he6_A 6 REFAGLVLGYD--PETG-IATVQ-QRNHFRPGDEVEFFGPEIENFTQVIEKIW---DEDGNELDAARHPLQIVKFKVKRP 78 (89)
T ss_dssp GGCSEEEEEEE--TTTT-EEEEE-ESSCBCTTCEEEEESTTSCCEEEECCCEE---ETTSCEESCBCSTTCEEEEECSSC
T ss_pred cEEEEEEEEEe--CCCC-EEEEE-EcCCcCCCCEEEEEcCCCCcEEEEeHHeE---cCCCCEeeEcCCCCeEEEEECCCC
Confidence 34667665433 3223 34444 467999999998876653 24566654 3455688888 9999998854345
Q ss_pred CccCcEE
Q psy5461 175 ERGKDKR 181 (221)
Q Consensus 175 ~~~Gdtl 181 (221)
+..||.|
T Consensus 79 ~~~~dil 85 (89)
T 4he6_A 79 LFPYNMM 85 (89)
T ss_dssp CCTTCEE
T ss_pred CCCCCEE
Confidence 6778776
No 109
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.79 E-value=0.37 Score=35.54 Aligned_cols=58 Identities=16% Similarity=0.060 Sum_probs=38.8
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+... .....+...+-. +...+|++..||++|.||+++++.|.+.+.
T Consensus 107 ~~~piilv~nK~Dl~~--~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 107 DEAQLLLVGNKSDMET--RVVTADQGEALA-KELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTCEEEEEEECTTCTT--CCSCHHHHHHHH-HHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccCCc--CccCHHHHHHHH-HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568889999965422 223333322221 222358999999999999999999988764
No 110
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.79 E-value=0.43 Score=36.17 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=39.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+.|++...+|++... .++......+.. +....+++..||++|.||+++++.|.+.++.
T Consensus 121 ~~p~ilv~nK~Dl~~--~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 121 DIVNMLVGNKIDKEN--REVDRNEGLKFA-RKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CCEEEEEEECTTSSS--CCSCHHHHHHHH-HHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCcCcc--cccCHHHHHHHH-HHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 567888889965422 233333333322 2234689999999999999999999987754
No 111
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.68 E-value=0.39 Score=35.04 Aligned_cols=56 Identities=13% Similarity=0.035 Sum_probs=37.7
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|++... .+.....+.+. .+....|++..||++|.|++++++.|.+.+
T Consensus 108 ~~p~iiv~nK~Dl~~--~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAA--RTVESRQAQDL-ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CCCEEEEEECTTCSC--CCSCHHHHHHH-HHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEEchhhhh--cccCHHHHHHH-HHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 678899999965322 22223332222 222245899999999999999999998754
No 112
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.68 E-value=0.34 Score=36.54 Aligned_cols=58 Identities=21% Similarity=0.057 Sum_probs=39.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCC-ccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSY-KNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~-~~~Gi~~LLd~I~~~~ 82 (221)
.+-|++...+|.+.... -++..+.+.+..... ..|++..||+ +|.||+++++.|.+.+
T Consensus 122 ~~~p~ilv~nK~Dl~~~-~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 122 ESFPMILVANKVDLMHL-RKVTRDQGKEMATKY-NIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SCCCEEEEEECTTCSTT-CCSCHHHHHHHHHHH-TCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCchhc-cCcCHHHHHHHHHHh-CCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 45688899999653322 234444443322222 3789999999 9999999999998753
No 113
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.27 Score=36.88 Aligned_cols=59 Identities=20% Similarity=0.062 Sum_probs=39.0
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.... .++......+-. +...+|++..||++|.||+++++.|.+.+.
T Consensus 115 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 115 HDVALMLLGNKVDSAHE-RVVKREDGEKLA-KEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp TTCEEEEEEECCSTTSC-CCSCHHHHHHHH-HHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccCcc-cccCHHHHHHHH-HHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45688889999653322 123333322222 222358999999999999999999988764
No 114
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.58 E-value=0.28 Score=36.98 Aligned_cols=61 Identities=10% Similarity=-0.092 Sum_probs=40.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
.+-|++...+|++.... -++..+...+... ....|++..||++|.||+++++.|.+.+...
T Consensus 110 ~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHME-RVISYEEGKALAE-SWNAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp --CCEEEEEECTTCTTT-CCSCHHHHHHHHH-HTTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECccchhc-ceecHHHHHHHHH-HhCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 35688899999654322 2344444333222 2345899999999999999999999877543
No 115
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.53 E-value=0.4 Score=36.86 Aligned_cols=62 Identities=8% Similarity=-0.110 Sum_probs=40.3
Q ss_pred CCceeeeeeeeccccc-----------CCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKH-----------RGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~-----------~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|.+.... ...+.......-.......|++..||++|.||+++++.|.+.+..+
T Consensus 124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 5688888899753321 1223333333222222344899999999999999999998876543
No 116
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.53 E-value=0.34 Score=37.70 Aligned_cols=62 Identities=13% Similarity=-0.040 Sum_probs=39.0
Q ss_pred CCceeeeeeeecccccC-----------CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHR-----------GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~-----------g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|++..... ..+...............+++..||++|.||++|++.|.+.+..+
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 67888899996532210 112222222211122234889999999999999999999877544
No 117
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.45 E-value=0.42 Score=36.28 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=38.6
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|++... .+.....+.+.. +...+|++..||++|.|++++++.|.+.+.
T Consensus 126 ~~p~ilv~nK~Dl~~--~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 126 DVPMVLVGNKCDLPT--RTVDTKQAHELA-KSYGIPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp CCCEEEEEECTTCSC--CCSCHHHHHHHH-HHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCcCCc--ccCCHHHHHHHH-HHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 568889999965322 223333333322 222358999999999999999999987653
No 118
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.37 E-value=0.31 Score=36.35 Aligned_cols=58 Identities=14% Similarity=-0.017 Sum_probs=39.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... .++..+.+.+-... ...|++..||++|.||+++++.|.+.+
T Consensus 119 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 119 PNTVIILIGNKADLEAQ-RDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTCEEEEEEECTTCGGG-CCSCHHHHHHHHHH-TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccc-cccCHHHHHHHHHH-cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45678888999654322 23344444332222 346899999999999999999998754
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.33 E-value=0.29 Score=40.56 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=41.2
Q ss_pred CCCceeeeeeeeccccc-CCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 23 FGDSLCARAFKVVHDKH-RGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~-~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
.+.|++..++|++.... ........+.+. ..+|++..||++|.||++|++.|.+.++..
T Consensus 111 ~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~----lg~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 111 LGIPCIVALNMLDIAEKQNIRIEIDALSAR----LGCPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HTCCEEEEEECHHHHHHTTEEECHHHHHHH----HTSCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCEEEEEECccchhhhhHHHHHHHHHHh----cCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 46789999999653221 112223333332 236899999999999999999999988764
No 120
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.22 E-value=0.38 Score=36.94 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=40.1
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+.... -++....+.....+ ...|++..||++|.||++|++.|.+.+.
T Consensus 119 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 119 NVPFLLVGNKSDLEDK-RQVSVEEAKNRAEQ-WNVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp CCCEEEEEECTTCGGG-CCSCHHHHHHHHHH-HTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccCcccc-ccccHHHHHHHHHH-hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6788999999654322 23444444333222 2358999999999999999999988764
No 121
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.11 E-value=0.25 Score=36.96 Aligned_cols=60 Identities=7% Similarity=-0.077 Sum_probs=39.2
Q ss_pred CCc-eeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDS-LCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~-~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
..+ ++...+|.+.... .++..+...+-. +...+|++..||++|.||+++++.|.+.++.-
T Consensus 114 ~~~~iilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHM-RTIKPEKHLRFC-QENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp CCCEEEEEEECGGGGGG-CSSCHHHHHHHH-HHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEEccccccc-cccCHHHHHHHH-HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 344 6778899654322 123333332222 22236899999999999999999999887653
No 122
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.99 E-value=0.42 Score=36.98 Aligned_cols=58 Identities=12% Similarity=-0.046 Sum_probs=37.0
Q ss_pred CCceeeeeeeecccccC-----------CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhh
Q psy5461 24 GDSLCARAFKVVHDKHR-----------GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDI 81 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~-----------g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~ 81 (221)
+.|++...+|++..... ..+..+...+........+++..||++|.||++|++.|.+.
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 66888889996532210 11223332222222233489999999999999999998764
No 123
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.83 E-value=0.37 Score=37.30 Aligned_cols=60 Identities=13% Similarity=0.007 Sum_probs=39.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|.+.... .++.......-. +....|++..||++|.||+++++.|.+.+..
T Consensus 112 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 112 STVLKLLVGNKCDLKDK-RVVEYDVAKEFA-DANKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTCEEEEEEECTTCTTT-CCSCHHHHHHHH-HHTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccc-cccCHHHHHHHH-HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34678888899653322 123333332222 2234689999999999999999999887753
No 124
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=88.74 E-value=0.31 Score=36.78 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=38.8
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... .++..+.+.+-. +...+|++..||++|.||+++++.|.+.+
T Consensus 126 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLEDQ-RAVKEEEARELA-EKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp SSCCEEEEEECTTCGGG-CCSCHHHHHHHH-HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccccc-cccCHHHHHHHH-HHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46688899999654322 123333333322 22235899999999999999999998765
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=88.51 E-value=0.14 Score=39.66 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=32.7
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+.... -.+...... ...+....|++..||++|.||++|++.|.+.+.
T Consensus 138 ~~p~ilv~nK~Dl~~~-~~v~~~~~~-~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 138 NVNKLLVGNKCDLTTK-KVVDYTTAK-EFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CSEEEEC-CCSSCC---CCCCSCC-C-HHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred CCCEEEEEECccCCcc-ccCCHHHHH-HHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688888899653321 111111111 111222468899999999999999999988764
No 126
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.37 E-value=0.36 Score=36.86 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=38.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... .++......... +....+++..||++|.||+++++.|.+.+
T Consensus 129 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 129 ATIVVMLVGNKSDLSQA-REVPTEEARMFA-ENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp TTCEEEEEEECGGGGGG-CCSCHHHHHHHH-HHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCcccc-cccCHHHHHHHH-HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35678888999653322 123333333322 22345899999999999999999988654
No 127
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.33 E-value=0.47 Score=37.22 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=39.3
Q ss_pred CCceeeeeeeecccccC-----------CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHR-----------GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~-----------g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+..... ..++.....+........|++..||++|.||+++++.|.+.+.
T Consensus 138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 56888888996533211 1233333333222223458999999999999999999987654
No 128
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.31 E-value=0.3 Score=37.81 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=40.2
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+-|++...+|.+.... .++........... ...|++..||++|.||+++++.|.+.+...
T Consensus 129 ~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 129 RVPVVLVGNKADLSPE-REVQAVEGKKLAES-WGATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp CCCEEEEEECTTCGGG-CCSCHHHHHHHHHH-HTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECccCccc-cccCHHHHHHHHHH-hCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 5688999999653322 23333333222222 235899999999999999999998877443
No 129
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.30 E-value=0.34 Score=37.36 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=38.0
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... .++..+.+..-. +...+|++..||++|.||+++++.|.+.+
T Consensus 112 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 112 DNAQVLLVGNKCDMEDE-RVVSSERGRQLA-DHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp SSCEEEEEEECTTCTTS-CCSCHHHHHHHH-HHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCcc-cccCHHHHHHHH-HHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688889999654322 123333332222 22235899999999999999999887665
No 130
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.30 E-value=0.53 Score=37.26 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=38.1
Q ss_pred CCceeeeeeeecccccCCcchHH--HHhhcccccc--CceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFF--RIYSGAFKKN--HVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~--~l~~~~~~~~--~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|++.... .++... ...+...+.. ..+++..||++|.||++|++.|.+.+.
T Consensus 142 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHH
Confidence 6788999999653221 122221 1122222222 278999999999999999999988764
No 131
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.09 E-value=0.56 Score=34.98 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=36.1
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhc-cccc---cCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSG-AFKK---NHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~-~~~~---~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++......+-....+... .... ...|++..||++|.||++|++.|.+.+
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 106 ANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp GSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 35688888899543321111111111111 1111 126899999999999999999988654
No 132
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.08 E-value=0.37 Score=36.32 Aligned_cols=59 Identities=14% Similarity=-0.034 Sum_probs=35.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+-|++...+|.+.... .++..+.+.+-... ..+|++..||++|.||+++++.|.+.+.
T Consensus 112 ~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 112 ADVEKMILGNKCDVNDK-RQVSKERGEKLALD-YGIKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp TTCEEEEEEEC--CCSC-CCSCHHHHHHHHHH-HTCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccCCcc-CcCCHHHHHHHHHH-cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35688899999654322 23334443332222 2368999999999999999999987764
No 133
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.90 E-value=0.36 Score=36.90 Aligned_cols=58 Identities=9% Similarity=-0.104 Sum_probs=38.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|.+.... .++..+....-. +....+++..||++|.||+++++.|.+.+
T Consensus 125 ~~~piilv~nK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 125 SNMVIMLIGNKSDLESR-RDVKREEGEAFA-REHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp TTCEEEEEEECTTCGGG-CCSCHHHHHHHH-HHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCc-cccCHHHHHHHH-HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35678888899653321 233333333222 22245899999999999999999998765
No 134
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.74 E-value=0.64 Score=34.98 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=39.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.... .++......+.. +....|++..||++|.||+++++.|.+.+.
T Consensus 114 ~~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 114 QNIVIILCGNKKDLDAD-REVTFLEASRFA-QENELMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp TTCEEEEEEECGGGGGG-CCSCHHHHHHHH-HHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccc-cccCHHHHHHHH-HHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 45688899999754322 233333333322 223468999999999999999999887664
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=87.67 E-value=0.91 Score=38.11 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=39.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcccc-ccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFK-KNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~-~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|.+..++|++... .+-......+...+ ....+++..||++|.|+++|++.|...+|.
T Consensus 115 ~~~P~ilvlNK~D~~~--~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQ--EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SSSCEEEEEESTTTCC--CHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred cCCCEEEEEECcccCc--cHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4678999999954322 11122222222222 123368899999999999999999998874
No 136
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.66 E-value=0.34 Score=35.68 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=37.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|.+.... .++..+.+.+.. +...+|++..||++|.||+++++.|.+.+
T Consensus 109 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 109 DIPTALVQNKIDLLDD-SCIKNEEAEGLA-KRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp SCCEEEEEECGGGGGG-CSSCHHHHHHHH-HHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCcc-cccCHHHHHHHH-HHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 5688888999653221 123333333322 22245899999999999999999998654
No 137
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.62 E-value=0.41 Score=37.32 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=39.1
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|.+.... -++....+.+-. +...+|++..||++|.||++|++.|.+.+.
T Consensus 140 ~~~piilV~NK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 140 ENPDIVLIGNKADLPDQ-REVNERQARELA-DKYGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp TCCEEEEEEECTTCGGG-CCSCHHHHHHHH-HHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccc-cccCHHHHHHHH-HHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688899999653321 123333333222 222468999999999999999999987653
No 138
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=87.28 E-value=0.95 Score=38.07 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=38.6
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+.|++..++|++....... ....+ +.. ....+++..||++|.|+++|++.|...+|.
T Consensus 117 ~~p~ilV~NK~Dl~~~~~~-~~~~~-~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPEE-AMKAY-HEL--LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSCEEEEEECGGGCSSHHH-HHHHH-HHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEEECcccCCchHH-HHHHH-HHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 6789999999653321111 12222 212 234578999999999999999999998763
No 139
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.16 E-value=0.62 Score=36.00 Aligned_cols=59 Identities=17% Similarity=0.031 Sum_probs=39.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|++.... .++......+.. +....+++..||++|.||+++++.|.+.+.
T Consensus 129 ~~~piilv~nK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 129 PNIVVILCGNKKDLDPE-REVTFLEASRFA-QENELMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp TTCEEEEEEECGGGGGG-CCSCHHHHHHHH-HHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCcccc-cccCHHHHHHHH-HHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35688899999754322 223333333222 223468999999999999999999887653
No 140
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=87.11 E-value=0.42 Score=39.76 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=39.9
Q ss_pred CCceeeeeeeeccccc-----------CCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKH-----------RGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~-----------~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|++.... .-.+......+........|++..||++|.||++|++.|.+.+..|
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 5688888999753221 1123333333322223334899999999999999999998876443
No 141
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=86.95 E-value=0.2 Score=43.24 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=38.4
Q ss_pred Cceeeeeeeeccccc-CCcchHHHHhhcc--cc----ccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 25 DSLCARAFKVVHDKH-RGAVTFFRIYSGA--FK----KNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 25 ~~~~~~vfk~~~d~~-~g~l~~~~l~~~~--~~----~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.+..+||++.... ........+.+.. .. +-..||+..||++|.||++|++.|.++++.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 477888899654322 1112222332221 10 114689999999999999999999988753
No 142
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.76 E-value=0.31 Score=37.92 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=40.5
Q ss_pred CCceeeeeeeecccccCC-------cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRG-------AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPTE 87 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g-------~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~~ 87 (221)
+.|++...+|.+...... .+......+........|++..||++|.||+++++.|.+.+..+..
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 568888888865322111 1233333322222233589999999999999999999988866543
No 143
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.65 E-value=0.42 Score=39.25 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCCCceeeeeeeecccccC-CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 22 HFGDSLCARAFKVVHDKHR-GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 22 ~~~~~~~~~vfk~~~d~~~-g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.+.|++..++|++..... .......+.+. ..+|++..||++|.||++|++.|.+.+.
T Consensus 108 ~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~----lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 108 EMEKKVILAMTAIDEAKKTGMKIDRYELQKH----LGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCCEEEEEECHHHHHHTTCCBCHHHHHHH----HCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCCEEEEEECcCCCCccchHHHHHHHHHH----cCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 3567899999997532211 12223333332 2369999999999999999999998764
No 144
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.35 E-value=0.64 Score=35.87 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=37.9
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|++... ..+.......- .+...+|++..||++|.||+++++.|.+.++
T Consensus 125 ~~piilv~nK~Dl~~--~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 125 EAQLLLVGNKSDMET--RVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp CSEEEEEEECTTCSS--CCSCHHHHHHH-HHHHTCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCcc--cccCHHHHHHH-HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 568888899965422 22233322221 1222358999999999999999999987764
No 145
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=86.25 E-value=0.67 Score=35.23 Aligned_cols=59 Identities=12% Similarity=-0.086 Sum_probs=36.6
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCcc---ccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKN---IGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~---~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|++.... -++.......-. +....|++..||++| .||.++++.|.+.++
T Consensus 126 ~~~piilv~nK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 126 NDIPRILVGNKCDLRSA-IQVPTDLAQKFA-DTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SCCCEEEEEECTTCGGG-CCSCHHHHHHHH-HHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred CCCCEEEEEECcccccc-ceeCHHHHHHHH-HHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 45788899999654222 123333332222 223458999999999 999999999987764
No 146
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.23 E-value=0.78 Score=35.01 Aligned_cols=58 Identities=14% Similarity=-0.170 Sum_probs=38.9
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCC-CccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSS-YKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa-~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++.... .+++.+...+-..+ ..+|++..|| ++|.||+++++.|.+.+
T Consensus 126 ~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~-~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQY-RQVTKAEGVALAGR-FGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CCCCEEEEEECGGGGGG-CSSCHHHHHHHHHH-HTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhc-CccCHHHHHHHHHH-cCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 46788999999654322 23343333332222 2358999999 89999999999998754
No 147
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.22 E-value=0.5 Score=35.71 Aligned_cols=53 Identities=11% Similarity=-0.059 Sum_probs=34.7
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
+.|++...+|++......+ ..+....|++..||++|.||++|++.|.+.+...
T Consensus 115 ~~p~ilv~NK~Dl~~~~~~---------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 115 KLPITVVRNKADITGETLG---------MSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp TCCEEEEEECHHHHCCCCE---------EEEETTEEEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred CCCEEEEEECccCCcchhh---------hhhccCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 4577788888653221111 1111246899999999999999999999887653
No 148
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=86.14 E-value=0.75 Score=36.10 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=41.1
Q ss_pred CCceeeeeeeeccccc-----------CCcchHHHHhhccccccCceeEecCCCcccc-HHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKH-----------RGAVTFFRIYSGAFKKNHVPVLCGSSYKNIG-VQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~-----------~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~G-i~~LLd~I~~~~PsP 85 (221)
+.|++...+|.+.... .-.+......+-.......|++..||++|.| |++|++.|...+...
T Consensus 131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 5688888899654321 1234444443333333334899999999998 999999998876543
No 149
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.78 E-value=0.5 Score=36.91 Aligned_cols=58 Identities=16% Similarity=-0.035 Sum_probs=38.5
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|++.... .++..+....-. +....|++..||++|.||+++++.|...+.
T Consensus 131 ~~piilv~NK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 131 KVITVLVGNKIDLAER-REVSQQRAEEFS-EAQDMYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp TCEEEEEEECGGGGGG-CSSCHHHHHHHH-HHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCccc-cccCHHHHHHHH-HHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5678888899654321 233333332222 222368999999999999999999987664
No 150
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.87 E-value=0.15 Score=39.51 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=35.5
Q ss_pred CCceeeeeeeecccccCC-----------cchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhh
Q psy5461 24 GDSLCARAFKVVHDKHRG-----------AVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDI 81 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g-----------~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~ 81 (221)
+.|++...+|++...... .+...............|++..||++|.||++|++.|.+.
T Consensus 134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 567788888865322110 2222222222222223488999999999999999988754
No 151
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=85.61 E-value=0.21 Score=46.56 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=45.2
Q ss_pred ChhhhhcCCCCCCCCccccccCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEe
Q psy5461 1 MDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLC 62 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~ 62 (221)
++.+++++|+|.. +.+.|+.+++|++..|++.|.+++.++.+|+++.+..+.+.
T Consensus 173 l~~I~~~lp~p~~--------~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~ 226 (599)
T 3cb4_D 173 LERLVRDIPPPEG--------DPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVM 226 (599)
T ss_dssp HHHHHHHSCCCCC--------CTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEET
T ss_pred HHHHhhcCCCccc--------cccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEec
Confidence 3667888888853 46789999999999999999999999999999987765444
No 152
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=85.48 E-value=0.72 Score=37.80 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=39.7
Q ss_pred CCCCceeeeeeeeccc-ccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhh
Q psy5461 22 HFGDSLCARAFKVVHD-KHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDI 81 (221)
Q Consensus 22 ~~~~~~~~~vfk~~~d-~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~ 81 (221)
+.+.|++..++|++.- ..........+.+.. .+|++..||++|.|+++|++.|.+.
T Consensus 108 ~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l----g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 108 ELGKPVVVALNMMDIAEHRGISIDTEKLESLL----GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TSCSCEEEEEECHHHHHHTTCEECHHHHHHHH----CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc----CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3567999999997522 211223344443322 3689999999999999999999987
No 153
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=85.40 E-value=0.73 Score=40.99 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=41.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcc----ccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.+++..++|.+.... .+...+.+.+.. ......|++..||++|.||++|++.|.+.+..
T Consensus 305 ~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 305 AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 56789999999753322 223333333222 22235799999999999999999999877643
No 154
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.26 E-value=0.65 Score=35.58 Aligned_cols=58 Identities=10% Similarity=-0.087 Sum_probs=39.0
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccc-cHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNI-GVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~-Gi~~LLd~I~~~~ 82 (221)
.+-|++...+|.+.... -++......+.... ...|++..||++|. ||+++++.|.+.+
T Consensus 131 ~~~piilv~NK~Dl~~~-~~v~~~~~~~~~~~-~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 131 KNVTLILVGNKADLDHS-RQVSTEEGEKLATE-LACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp SCCCEEEEEECGGGGGG-CCSCHHHHHHHHHH-HTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccc-cccCHHHHHHHHHH-hCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 46688999999654332 23333333322212 24689999999999 9999999998765
No 155
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=85.01 E-value=0.68 Score=39.91 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=40.2
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
.+.|++..++|++.... +-....+.+.... ..|++..||+++.||++|++.|.+.+...
T Consensus 273 ~~~p~ilV~NK~Dl~~~--~e~~~~l~~~l~~--~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEA--AENLEAFKEKLTD--DYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp TTSCBCBEEECTTSTTH--HHHHHHHHHHCCS--CCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred cCCCEEEEEECccCCCC--HHHHHHHHHHhhc--CCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 36788899999643221 1122333333221 16789999999999999999999988653
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=84.98 E-value=0.26 Score=45.91 Aligned_cols=55 Identities=35% Similarity=0.519 Sum_probs=45.1
Q ss_pred ChhhhhcCCCCCCCCccccccCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecC
Q psy5461 1 MDAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGS 64 (221)
Q Consensus 1 l~~~~~~~p~p~~~~~~~~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gS 64 (221)
|+.+++++|+|.. +.+.|+.+++||+..|++.|.+++.++++|+++.+.. |+..+
T Consensus 175 le~I~~~lp~p~~--------~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~-I~~~~ 229 (600)
T 2ywe_A 175 LEAIVNRIPPPKG--------DPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK-IMLMS 229 (600)
T ss_dssp HHHHHHHSCCCCC--------CTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE-EEETT
T ss_pred HHHHHHhcccccc--------cccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE-EEecc
Confidence 3677888998853 4578999999999999999999999999999998765 55433
No 157
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=84.76 E-value=0.95 Score=39.98 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=39.7
Q ss_pred CCCceeeeeeeecccccCCcchHH----HHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFF----RIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~----~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.+.+++..++|.+.... .+.... .+.+........|++..||++|.||++|++.+...+.
T Consensus 285 ~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 285 AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp TTCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cCCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 46789999999753222 122222 2333333334579999999999999999888876553
No 158
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=84.73 E-value=0.7 Score=35.55 Aligned_cols=59 Identities=5% Similarity=-0.223 Sum_probs=37.9
Q ss_pred CCceeeeeeeecccc-----cCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDK-----HRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~-----~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+... ..-++......+- .+....|++..||++|.||+++++.|.+.+.
T Consensus 133 ~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL-AMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH-HHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCEEEEEECcccccccccccccccCHHHHHHH-HHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 568889999975321 1123333322221 1222458999999999999999999987653
No 159
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=84.71 E-value=0.72 Score=36.63 Aligned_cols=57 Identities=12% Similarity=-0.024 Sum_probs=37.4
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+-|++...+|++.... -++....... .......|++..||++|.||+++++.|...+
T Consensus 145 ~~piilVgNK~DL~~~-r~v~~~e~~~-~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 145 DIPIILVGNKSDLVRC-REVSVSEGRA-CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TSCEEEEEECTTCGGG-CCSCHHHHHH-HHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcEEEEEEChHHhcC-ceEeHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5688888999754322 1233322211 1112235789999999999999999998765
No 160
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.45 E-value=0.63 Score=36.63 Aligned_cols=59 Identities=14% Similarity=0.028 Sum_probs=38.4
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+.|++...+|.+.... .++.......-. +....|++..||++|.||+++++.|.+.+..
T Consensus 118 ~~piilv~nK~Dl~~~-~~v~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 118 NVAVGLIGNKSDLAHL-RAVPTEESKTFA-QENQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp -CEEEEEECCGGGGGG-CCSCHHHHHHHH-HHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECcccccc-cccCHHHHHHHH-HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5678888899654322 233333333222 2234689999999999999999999988754
No 161
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=84.33 E-value=0.93 Score=36.17 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=39.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+-|++.--+|.+.... -+++.+...+-..+ ...+.+-.||++|.||+++++.|...++.
T Consensus 117 ~~~piilVgNK~Dl~~~-r~V~~~e~~~~a~~-~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 117 SDVIIMLVGNKTDLADK-RQVSIEEGERKAKE-LNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TSSEEEEEEECTTCGGG-CCSCHHHHHHHHHH-HTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred CCCeEEEEeeccchHhc-CcccHHHHhhHHHH-hCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 45677778889653322 23444443332222 23578889999999999999999998865
No 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=84.28 E-value=1.3 Score=39.20 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=40.0
Q ss_pred CCCceeeeeeeecccccCCcchHH----HHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFF----RIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~----~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.+++..++|.+..+.. +.+.. .+.+........|+++.||++|.||++|++.|.+.++.
T Consensus 291 ~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 467888999997532211 22222 22222223345689999999999999999999876543
No 163
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=84.25 E-value=0.92 Score=35.01 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=40.7
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
.+.|++...+|++.... .+++.+...+-. +....+++..||++|.||+++++.|...+...
T Consensus 129 ~~~piilv~nK~Dl~~~-~~v~~~~~~~~a-~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 129 HDLPVILVGNKSDLARS-REVSLEEGRHLA-GTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp SCCCEEEEEECTTCTTT-CCSCHHHHHHHH-HHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeechhcccc-CCcCHHHHHHHH-HHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 36688888999654322 233333332221 12235889999999999999999999887543
No 164
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.65 E-value=0.89 Score=34.19 Aligned_cols=61 Identities=8% Similarity=-0.064 Sum_probs=38.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcccc---ccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFK---KNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~---~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|.+..... +-....+.+.... ....+++..||++|.||+++++.|.+.++.
T Consensus 121 ~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 121 LDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 467889999996543321 1112222221111 002368999999999999999999987654
No 165
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=82.99 E-value=1.3 Score=36.59 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=39.2
Q ss_pred CCCceeeeeeeecccccC-CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHR-GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~-g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++...+|++..... .......+.+. ..+|++..||++|.||++|++.|.+.+..
T Consensus 106 ~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~----lg~~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 106 TGIPVTIALNMIDVLDGQGKKINVDKLSYH----LGVPVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TCSCEEEEEECHHHHHHTTCCCCHHHHHHH----HTSCEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred cCCCEEEEEEChhhCCcCCcHHHHHHHHHH----cCCCEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 467888888886532211 12222333322 23689999999999999999999987754
No 166
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.77 E-value=0.74 Score=36.11 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=34.2
Q ss_pred eeeeeeecccccCCcchHHHHhhcccc-ccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 28 CARAFKVVHDKHRGAVTFFRIYSGAFK-KNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 28 ~~~vfk~~~d~~~g~l~~~~l~~~~~~-~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+..++|++.... .+.....+.+.... +...|++..||++|.|+++|++.|...+
T Consensus 168 iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 168 LIVINKIDLADA-VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp EEEEECGGGHHH-HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeccccCch-hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 778888643221 11233333332221 2246899999999999999999987654
No 167
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=82.66 E-value=1.2 Score=33.63 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=37.3
Q ss_pred CCceeeeeeeeccccc-----------CCcchHHHHhhccccccCceeEecCCC-ccccHHHHHHHHHhh
Q psy5461 24 GDSLCARAFKVVHDKH-----------RGAVTFFRIYSGAFKKNHVPVLCGSSY-KNIGVQKLMDAIVDI 81 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~-----------~g~l~~~~l~~~~~~~~~~Pv~~gSa~-~~~Gi~~LLd~I~~~ 81 (221)
+.|++...+|.+.... .-.+..+...+-.......|++..||+ ++.||+++++.|.+.
T Consensus 111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 5688888899653321 122333333332222234689999999 689999999998764
No 168
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=82.31 E-value=1.3 Score=34.58 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=37.3
Q ss_pred CCceeeeeeeeccccc-----------CCcchHHHHhhccccccCceeEecCCC-ccccHHHHHHHHHhh
Q psy5461 24 GDSLCARAFKVVHDKH-----------RGAVTFFRIYSGAFKKNHVPVLCGSSY-KNIGVQKLMDAIVDI 81 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~-----------~g~l~~~~l~~~~~~~~~~Pv~~gSa~-~~~Gi~~LLd~I~~~ 81 (221)
+.|++...+|++.... .-.+..+...+-.......+++..||+ +|.||+++++.|.+.
T Consensus 132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 5688888899754321 123343433332222234689999999 689999999998865
No 169
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=82.11 E-value=0.85 Score=34.86 Aligned_cols=60 Identities=13% Similarity=-0.109 Sum_probs=31.9
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCc-cccHHHHHHHHHhhCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYK-NIGVQKLMDAIVDILP 83 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~-~~Gi~~LLd~I~~~~P 83 (221)
.+.|++...+|++......++....+.+-... ...|++..||++ |.||+++++.|.+.+.
T Consensus 131 ~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 131 RPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-NTLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp SCCEEEEEEECC-------CCCHHHHHHHHHH-TTCEEEECCC-------CHHHHHHHHHHH
T ss_pred cCCcEEEEEECcccchhhccCCHHHHHHHHHH-cCCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 36688999999653320123444444332222 236899999999 9999999999987653
No 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=81.99 E-value=1.3 Score=34.05 Aligned_cols=57 Identities=12% Similarity=-0.026 Sum_probs=36.1
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
+.|++...+|.+.... -.+....... .......+++..||++|.||+++++.|...+
T Consensus 114 ~~piilV~NK~Dl~~~-r~v~~~~~~~-~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 114 DIPIILVGNKSDLVRX-REVSVSEGRA-XAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp CCCEEEEEECTTCGGG-CCSCHHHHHH-HHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCeEEEEEechhhhcc-ccccHHHHHH-HHHHhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 5678888889653221 1222222111 1111235788999999999999999998765
No 171
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=81.97 E-value=0.86 Score=39.28 Aligned_cols=27 Identities=4% Similarity=-0.146 Sum_probs=24.1
Q ss_pred eehHHHHHHHHHHhhcCCceEEEcccc
Q psy5461 192 VQCSARWTLNLEVGASSPIISKSKRRQ 218 (221)
Q Consensus 192 v~~~~l~~~L~~L~~~Dp~l~~~~~~~ 218 (221)
++..+|.++|++|+++||+|.+.++.+
T Consensus 53 vt~~kL~~aL~kl~~eDpsL~v~~~~~ 79 (332)
T 3e3x_A 53 VTSRNILERLEKELVHNVALRVEQTDD 79 (332)
T ss_dssp CSHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred chHHHHHHHHHHHhccCCEEEEEEcCC
Confidence 456799999999999999999998864
No 172
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=81.53 E-value=0.93 Score=35.38 Aligned_cols=59 Identities=12% Similarity=0.013 Sum_probs=36.9
Q ss_pred CceeeeeeeecccccCCcchHHHHhhcccc-ccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 25 DSLCARAFKVVHDKHRGAVTFFRIYSGAFK-KNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 25 ~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~-~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.+..++|++..... +.....+.+...+ +...|++..||++|.|+++|++.|.+.+..
T Consensus 155 ~~~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 155 VADLIVINKVALAEAV-GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCSEEEEECGGGHHHH-TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred cCCEEEEecccCCcch-hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 4667788886432110 1223333322211 234689999999999999999999887644
No 173
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=80.27 E-value=1.5 Score=38.66 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++..++|++..+....+ ..++ +.+.-+++..||++|.|+.+|++.|.+.+|.
T Consensus 110 ~~~pvilv~NK~D~~~~~~~~--~~~~----~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 110 TKKPVVLAVNKLDNTEMRANI--YDFY----SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CCSCEEEEEECCCC-----CC--CSSG----GGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred cCCCEEEEEECccCccchhhH--HHHH----HcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 567999999997643321111 1111 1123367889999999999999999999874
No 174
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=80.20 E-value=1.3 Score=39.89 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=38.4
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC-CC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP-SP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P-sP 85 (221)
+.|++..+||++.... .......+.+. ...|++..||++|.||++|++.|.+.++ .+
T Consensus 343 ~~piIvV~NK~Dl~~~-~~~~~~~l~~~----~~~~~i~vSAktg~GI~eL~~~i~~~~~~~~ 400 (476)
T 3gee_A 343 AAKFLTVANKLDRAAN-ADALIRAIADG----TGTEVIGISALNGDGIDTLKQHMGDLVKNLD 400 (476)
T ss_dssp TSEEEEEEECTTSCTT-THHHHHHHHHH----HTSCEEECBTTTTBSHHHHHHHHTHHHHSSC
T ss_pred CCCEEEEEECcCCCCc-cchhHHHHHhc----CCCceEEEEECCCCCHHHHHHHHHHHHhhcc
Confidence 4578888899653322 12222222221 1368999999999999999999999887 44
No 175
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=80.12 E-value=1.7 Score=35.22 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=36.6
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++.... .++ ....+........|++..||++|.||+++++.|.+.+
T Consensus 197 ~~~piilV~NK~Dl~~~-~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVE-RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTCCEEEEEECGGGBCH-HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEccccccc-HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688888899653221 111 2222212121246899999999999999999998653
No 176
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=78.26 E-value=1.2 Score=34.87 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=37.4
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+-|++...+|++.... .... ... ...+....+++..||++|.||+++++.|.+.+..
T Consensus 119 ~~p~ilv~nK~Dl~~~--~~~~-~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 119 NIPIVLCGNKVDIKDR--KVKA-KSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp TCCEEEEEECTTSSSC--SSCG-GGC-CHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred CCCEEEEEECCccccc--cccH-HHH-HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5688889999653221 1111 111 1112234689999999999999999999887643
No 177
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=78.25 E-value=1.2 Score=33.04 Aligned_cols=56 Identities=21% Similarity=0.123 Sum_probs=35.7
Q ss_pred CCCceeeeeeeecccccC-CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKHR-GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~-g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+.|++...+|++..... -......+.+. ...|++..||++|.||+++++.|.+.+
T Consensus 107 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 MGANLLLALNKMDLAKSLGIEIDVDKLEKI----LGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp TTCCEEEEEECHHHHHHTTCCCCHHHHHHH----HTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred cCCCEEEEEEchHhccccChhhHHHHHHHH----hCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356788888886532111 11112222221 125789999999999999999998764
No 178
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=78.00 E-value=2.8 Score=36.23 Aligned_cols=60 Identities=18% Similarity=0.000 Sum_probs=36.3
Q ss_pred CCceeeeeeeecc-cccCC-cchHHHHhhccccccC--ceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVH-DKHRG-AVTFFRIYSGAFKKNH--VPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~-d~~~g-~l~~~~l~~~~~~~~~--~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++..++|++. ++... +.....+.....+.+. .+++..||++|.|+++|++.|.++.+
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 5688888999653 22110 1111111111111122 37899999999999999999987653
No 179
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=76.48 E-value=2.2 Score=36.49 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=36.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++...+|.+.... .++ ..+.+. .+....|++..||++|.||++|++.|.+.+.
T Consensus 280 ~~piilV~NK~Dl~~~-~~~--~~~~~~-~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 280 DLPFLVVINKIDVADE-ENI--KRLEKF-VKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TSCEEEEECCTTTCCH-HHH--HHHHHH-HHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCh-HHH--HHHHHH-HHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 6678888888543221 111 222221 1123468999999999999999999988763
No 180
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=76.11 E-value=1.5 Score=39.68 Aligned_cols=61 Identities=10% Similarity=-0.011 Sum_probs=37.5
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSPT 86 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~ 86 (221)
+.|++...+|++.... .++....+.+... ....|++..||++|.||++|++.|.+.+....
T Consensus 150 ~~pvilV~NK~Dl~~~-~~v~~~~~~~~~~-~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 150 KSPVIVVMNKIDENPS-YNIEQKKINERFP-AIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp SCCEEEEECCTTTCTT-CCCCHHHHHHHCG-GGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred CCCEEEEEECCCcccc-cccCHHHHHHHHH-hcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 4688888899653322 2334444444332 23468999999999999999999998876643
No 181
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=75.81 E-value=2.8 Score=37.82 Aligned_cols=55 Identities=16% Similarity=0.034 Sum_probs=38.1
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++..+||++.... +....+.+.. +...|++..||++|.||++|++.|.+.+.
T Consensus 350 ~~piivV~NK~DL~~~---~~~~~~~~~~--~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 350 NKRYLVVINKVDVVEK---INEEEIKNKL--GTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TSSEEEEEEECSSCCC---CCHHHHHHHH--TCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCCEEEEEECcccccc---cCHHHHHHHh--cCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688899999654321 2233333211 12368999999999999999999998754
No 182
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=75.69 E-value=1.6 Score=38.60 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=36.9
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+.|++..+||++.... . ...+.....+.+..+++..||++|.|+.+|++.|.+.+|.
T Consensus 110 ~~p~ilv~NK~D~~~~---~-~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 110 TVDTILVANKAENLRE---F-EREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TCCEEEEEESCCSHHH---H-HHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccc---c-HHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 5788899999653221 0 1111011112223367889999999999999999988873
No 183
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=75.52 E-value=4 Score=35.24 Aligned_cols=60 Identities=20% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCceeeeeeeecc-cccCC-cchHHHHhhccccccC--ceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVH-DKHRG-AVTFFRIYSGAFKKNH--VPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~-d~~~g-~l~~~~l~~~~~~~~~--~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.|++..++|++. ++... +.....+.....+.+. .+++..||++|.|+++|++.|.++..
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5688888899653 22110 1111222211122222 37899999999999999999987653
No 184
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=74.48 E-value=3.1 Score=31.34 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=36.8
Q ss_pred CCceeeeeeeecccccCCcch--HHHHhhccccccCce----eEecCCCccc-cHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVT--FFRIYSGAFKKNHVP----VLCGSSYKNI-GVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~--~~~l~~~~~~~~~~P----v~~gSa~~~~-Gi~~LLd~I~~~~PsP 85 (221)
+-|++...+|++.... ..+. .........+...+| ++..||++|. |+++|++.|.+.++.-
T Consensus 112 ~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 112 SSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp TCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred CCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 4567766788653321 1111 012222222222334 8899999996 9999999999887653
No 185
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=73.39 E-value=1.1 Score=33.67 Aligned_cols=59 Identities=20% Similarity=0.113 Sum_probs=38.3
Q ss_pred CCCceeeeeeeecccccC-CcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 23 FGDSLCARAFKVVHDKHR-GAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~-g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
.+.|++...+|.+..... -......+.+. ...|++..||++|.||++|++.|...++.-
T Consensus 111 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 111 MGANLLLALNKMDLAKSLGIEIDVDKLEKI----LGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp TTCCEEEEEECHHHHHHTTCCCCHHHHHHH----HTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEEEhhhccccccchHHHHHHHHH----hCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 456788888886532111 11122222221 125899999999999999999999887653
No 186
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=73.08 E-value=1.4 Score=37.53 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.9
Q ss_pred CceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 57 HVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
..|++..||++|.|+++|++.|.+.++
T Consensus 234 ~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 234 QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988764
No 187
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=72.91 E-value=2.7 Score=32.04 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=35.9
Q ss_pred CCCceeeeeeeeccccc------CCcchHHH---HhhccccccCceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDKH------RGAVTFFR---IYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~------~g~l~~~~---l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+-|++...+|.+.-.. .-++.... +.+...+....+++..||++ .||+++++.|+..+
T Consensus 128 ~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 36688888999652110 01111111 11111114457899999999 99999999998754
No 188
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=71.10 E-value=2.6 Score=34.32 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=38.4
Q ss_pred Cceeeeeeeeccc-ccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 25 DSLCARAFKVVHD-KHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 25 ~~~~~~vfk~~~d-~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.|++..++|++.. ..........+.+. ...|++..||++|.|+.+|++.|...+..
T Consensus 110 ~p~ilv~NK~Dl~~~~~~~~~~~~l~~~----lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 110 KNIILVLNKFDLLKKKGAKIDIKKMRKE----LGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CSEEEEEECHHHHHHHTCCCCHHHHHHH----HSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred CCEEEEEEChhcCcccccHHHHHHHHHH----cCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 7888899996521 21122223333332 23689999999999999999999887643
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=68.59 E-value=4.6 Score=35.69 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=37.7
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
..|.+..++|++.... .....+.+... ....+++..||+++.||++|++.|.+.+..
T Consensus 269 ~~P~ILVlNKlDl~~~---~~~~~l~~~l~-~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 269 RRPSLVALNKVDLLEE---EAVKALADALA-REGLAVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HSCEEEEEECCTTSCH---HHHHHHHHHHH-TTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCEEEEEECCChhhH---HHHHHHHHHHH-hcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence 3566666788543221 22333333322 224579999999999999999999988854
No 190
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=67.17 E-value=3 Score=37.32 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=36.1
Q ss_pred CceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 25 DSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 25 ~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
.|++..++|++..... ... .+ +.. ....|++..||++|.||++|++.|.+.+...
T Consensus 331 ~piivV~NK~Dl~~~~-~~~--~~-~~~--~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 331 RPLILVMNKIDLVEKQ-LIT--SL-EYP--ENITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp SCEEEEEECTTSSCGG-GST--TC-CCC--TTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCCCCcch-hhH--HH-HHh--ccCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4778888885432210 111 11 001 1346899999999999999999999987654
No 191
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=67.16 E-value=7.4 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=20.5
Q ss_pred CceeEecCCCcc------ccHHHHHHHHHhh
Q psy5461 57 HVPVLCGSSYKN------IGVQKLMDAIVDI 81 (221)
Q Consensus 57 ~~Pv~~gSa~~~------~Gi~~LLd~I~~~ 81 (221)
..+++..||++| .||+++++.|.+.
T Consensus 183 ~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 183 KVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 578999999999 9999999998765
No 192
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=66.79 E-value=4 Score=34.16 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=33.9
Q ss_pred CCCceeeeeeeecccccCCcch-HHHHhhccccccCceeEecCCCccccHHHHHHHHH
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVT-FFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIV 79 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~-~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~ 79 (221)
.+.+.+..++|++-... .++. .....+ ..+...+|++..||++|.|+++|++.+.
T Consensus 109 ~~~~~ilV~NK~DL~~~-~~v~~~~~~~~-~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 109 FKVEPVIVFNKIDLLNE-EEKKELERWIS-IYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TTCEEEEEECCGGGCCH-HHHHHHHHHHH-HHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCCEEEEEEcccCCCc-cccHHHHHHHH-HHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 45678888999653221 1111 122211 1222246899999999999999988764
No 193
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=66.49 E-value=2.6 Score=34.43 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=36.8
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcccc--ccCceeEecCCCccccHHHHHHHHHhh
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFK--KNHVPVLCGSSYKNIGVQKLMDAIVDI 81 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~--~~~~Pv~~gSa~~~~Gi~~LLd~I~~~ 81 (221)
.+.+++..++|.+.... .......+...... ....|++..||++|.|+++|++.|...
T Consensus 191 ~~~~~i~V~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 191 QGQRTIGVITKLDLMDE-GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp TCSSEEEEEECGGGSCT-TCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCCeEEEEEEccccCCC-CchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 45688899999653222 12122222221111 124689999999999999999998764
No 194
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=65.80 E-value=1.6 Score=35.71 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=29.4
Q ss_pred CCceeeeeeeecccc-cCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCCC
Q psy5461 24 GDSLCARAFKVVHDK-HRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPSP 85 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~-~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP 85 (221)
..|++..++|++.-. ..-+....++.+.. ....++++..||.++.|+.+|++.|.+.+|--
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l-~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~ 205 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEI-QEHKIKIYEFPETDDEEENKLVKKIKDRLPLA 205 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHH-HHTTCCCCCC-----------CHHHHHTCSEE
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHH-HHcCCeEEcCCCCCChhHHHHHHHHhcCCCcE
Confidence 678999999954321 10111122333333 23356788899999999999999999988753
No 195
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=64.88 E-value=6 Score=34.96 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=35.1
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
.+.|++..++|++....... ... ....+.-+.+..||++|.|+.+|++.+.+.++.
T Consensus 130 ~~~pvilV~NK~D~~~~~~~--~~e----~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 130 TKKPVVLAVNKLDNTEMRAN--IYD----FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp CCSCEEEEEECC-----------CC----SGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred cCCCEEEEEECccchhhhhh--HHH----HHHcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 56789999999653221111 111 112223345789999999999999999998864
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=62.90 E-value=2.6 Score=33.70 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=23.1
Q ss_pred ceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 58 VPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 58 ~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
.|++..||++|.|+++|++.|.+.++
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhc
Confidence 47899999999999999999987764
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=60.86 E-value=3.5 Score=35.33 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred CceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 57 HVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
..|++..||++|.|+++|++.|.++++
T Consensus 252 ~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 252 KPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988764
No 198
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=60.52 E-value=8.1 Score=29.28 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=35.2
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhh
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDI 81 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~ 81 (221)
+.++....+|++.... .+...... +........+++..||+++.|++++++.|.+.
T Consensus 134 ~~~i~~v~nK~Dl~~~-~~~~~~~a-~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 134 NIVIMLVGNKSDLRHL-RAVPTDEA-RAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp TCEEEEEEECGGGGGG-CCSCHHHH-HHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccc-cccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4567777788653322 12222222 22223334578889999999999999998764
No 199
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=58.07 E-value=7.7 Score=32.25 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCCceeeeeeeecccccCCcch-HHHHhhccccccCceeEecCCCccccHHHHHHHHH
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVT-FFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIV 79 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~-~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~ 79 (221)
.+.|++...+|++-.... ++. ...+.+ ..+.. .+++..||++|.||+++++.+.
T Consensus 114 ~~~piilv~NK~DL~~~~-~v~~~~~~~~-~~~~~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 114 NELETVMVINKMDLYDED-DLRKVRELEE-IYSGL-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TTCEEEEEECCGGGCCHH-HHHHHHHHHH-HHTTT-SCEEECCTTTCTTHHHHHHHHS
T ss_pred CCCCEEEEEeHHHcCCch-hHHHHHHHHH-HHhhh-CcEEEEECCCCcCHHHHHHHhc
Confidence 356788888996532211 111 111111 12222 7899999999999999998775
No 200
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=57.32 E-value=10 Score=28.71 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=36.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
..++....+|++.... ........+. ......++++..||+++.|++++++.|.+.+.
T Consensus 110 ~~~i~~v~nK~Dl~~~-~~~~~~~a~~-l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 110 NIVIMLVGNKSDLRHL-RAVPTDEARA-FAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TCEEEEEEECTTCGGG-CCSCHHHHHH-HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEEECcccccc-cCcCHHHHHH-HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4567777888653322 1222222222 22223457888999999999999999887663
No 201
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=55.83 E-value=7.1 Score=33.63 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=24.9
Q ss_pred ceeEecCCCccccHHHHHHHHHhhCCCCC
Q psy5461 58 VPVLCGSSYKNIGVQKLMDAIVDILPSPT 86 (221)
Q Consensus 58 ~Pv~~gSa~~~~Gi~~LLd~I~~~~PsP~ 86 (221)
.+++..||+++.|+++|++.|.+.++.|.
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 46788999999999999999998876553
No 202
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=52.77 E-value=6.2 Score=33.97 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=38.6
Q ss_pred CCceeeeeeeeccc--c------------cCCcchHHHHhhccc----------cccCceeEecCCCccccHHHHHHHHH
Q psy5461 24 GDSLCARAFKVVHD--K------------HRGAVTFFRIYSGAF----------KKNHVPVLCGSSYKNIGVQKLMDAIV 79 (221)
Q Consensus 24 ~~~~~~~vfk~~~d--~------------~~g~l~~~~l~~~~~----------~~~~~Pv~~gSa~~~~Gi~~LLd~I~ 79 (221)
+-|++.+.||.+.. + +.|....+....-.. ....++++..||+++.||.++++.+.
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 56899999997532 1 113334433332221 12456788999999999999999987
Q ss_pred hhC
Q psy5461 80 DIL 82 (221)
Q Consensus 80 ~~~ 82 (221)
+.+
T Consensus 340 ~~i 342 (353)
T 1cip_A 340 DVI 342 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 203
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=52.17 E-value=21 Score=27.00 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=23.9
Q ss_pred CceeEecCCCccccHHHHHHHHHhhCCC
Q psy5461 57 HVPVLCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
..+++..||+++.|+++|++.|.++++.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4678889999999999999999987643
No 204
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=52.03 E-value=7.2 Score=32.10 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=40.6
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcccc--ccCceeEecCCCc---cccHHHHHHHHHhhCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGAFK--KNHVPVLCGSSYK---NIGVQKLMDAIVDILPS 84 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~--~~~~Pv~~gSa~~---~~Gi~~LLd~I~~~~Ps 84 (221)
.+.+++..++|++.... .+.....+...... ...+|+.+.||.+ +.|+.+|++.+.+++|.
T Consensus 197 ~~~~~i~v~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 197 EGKRTIGVITKLDLMDK-GTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCSSEEEEEECTTSSCS-SCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCcccCCc-chHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 46788899999653221 12122333322222 3467888999988 89999999999999875
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=49.61 E-value=9.1 Score=32.50 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.8
Q ss_pred CceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 57 HVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
..|++..||+++.|+++|++.|.++.+
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988764
No 206
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=47.00 E-value=6.9 Score=33.57 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=33.4
Q ss_pred CCCceeeeeeeecccccCCcchH--HHHhhccccccCceeEecCCCcccc---HHHHHHHHHhhCCCCC
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTF--FRIYSGAFKKNHVPVLCGSSYKNIG---VQKLMDAIVDILPSPT 86 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~--~~l~~~~~~~~~~Pv~~gSa~~~~G---i~~LLd~I~~~~PsP~ 86 (221)
.+.+++..++|++.... .++.. ..+.+. .+...+|++..||++|.| +..|++.|...+|.+.
T Consensus 173 ~~~piIlV~NK~Dl~~~-~ev~~~k~~i~~~-~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTL-KERERLKKRILDE-IEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp S-SCEEEEEECCSSSCH-HHHHHHHHHHHHH-TTCC-CCSCCCC---------CHHHHHHHHHTCSCEE
T ss_pred cCCCEEEEEECCCCCCH-HHHHHHHHHHHHH-HHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCCCE
Confidence 35688889999543221 12222 344333 333457899999999876 5567888888888764
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=44.29 E-value=14 Score=30.49 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+.+.+..++|++.-.. +. .+...+ ..+...+|+++.||.++.|+.+|++.+.+.++
T Consensus 50 ~kp~ilVlNK~DL~~~--~~-~~~~~~-~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 50 NKPRIMLLNKADKADA--AV-TQQWKE-HFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SSCEEEEEECGGGSCH--HH-HHHHHH-HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCH--HH-HHHHHH-HHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 5688888999642111 11 111111 12222358999999999999999998887765
No 208
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=42.99 E-value=13 Score=32.02 Aligned_cols=26 Identities=4% Similarity=0.083 Sum_probs=22.2
Q ss_pred CceeEecCCCccccHHHHHHHHHhhC
Q psy5461 57 HVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 57 ~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
..+++..||+++.||..+++.+.+.+
T Consensus 326 ~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 326 PLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCchhHHHHHHHHHHHH
Confidence 45688999999999999999887654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=42.57 E-value=48 Score=26.75 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhcc----ccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+-|+..+.||-+.+ .+.++...+.+.. ++ ...-|...||++|.|+.+=||-|++.+-
T Consensus 162 gapLLVlANKqqDl--p~Ams~~EI~e~L~L~~l~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 162 GRPLLVLSCISQGD--VKRMPCFYLAHELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp CSCEEEEEEESSTT--SCBCCHHHHHHHTTGGGGC-SCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCeEEEEeCCCcCc--cCCCCHHHHHHHcCCcCCC-CCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 45788888884322 2455555554432 22 3455888999999999999999987664
No 210
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=35.38 E-value=14 Score=35.41 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=36.1
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhc-c--ccccCceeEecCCCccccHHHHHHHHHh
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSG-A--FKKNHVPVLCGSSYKNIGVQKLMDAIVD 80 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~-~--~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~ 80 (221)
.+.+++.-++|++.=. .+.... .+... . ......||++.||++|.|+++|+++|..
T Consensus 216 ~g~pvIlVlNKiDlv~-~~~~~~-~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 216 QGQRTIGVITKLDLMD-EGTDAR-DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp TCSSEEEEEECTTSSC-TTCCSH-HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cCCCEEEEEeCcccCC-cchhhH-HHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4578899999954211 122211 22221 1 1224568999999999999999999987
No 211
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=34.15 E-value=10 Score=32.15 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=35.5
Q ss_pred CCCceeeeeeeecccccCCcchHHHHhhcc--ccccCceeEecCCCccccHHHHHHHHHh
Q psy5461 23 FGDSLCARAFKVVHDKHRGAVTFFRIYSGA--FKKNHVPVLCGSSYKNIGVQKLMDAIVD 80 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~--~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~ 80 (221)
.+.+++..++|.+.... +.....-+.... .+....++++.||+++.|+.+|++.+..
T Consensus 196 ~~~~~i~V~NK~Dl~~~-~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDE-GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TCTTEEEEEECGGGSCT-TCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCCceEEEeccccccCc-chhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 35688899999653221 111111111111 1123468999999999999999999876
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=31.53 E-value=31 Score=27.96 Aligned_cols=52 Identities=17% Similarity=-0.026 Sum_probs=32.6
Q ss_pred CCceeeeeeeec-ccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHHHHHhh
Q psy5461 24 GDSLCARAFKVV-HDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDI 81 (221)
Q Consensus 24 ~~~~~~~vfk~~-~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~ 81 (221)
+.+.+..++|++ .|+. . .....+ ..+...+|+ +.||.++.|+.+|++.|...
T Consensus 46 ~k~~iivlNK~DL~~~~---~-~~~~~~-~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 46 RKETIILLNKVDIADEK---T-TKKWVE-FFKKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TSEEEEEEECGGGSCHH---H-HHHHHH-HHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCCcEEEEECccCCCHH---H-HHHHHH-HHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 567888899964 2221 1 111111 112224578 89999999999999887654
No 213
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=31.30 E-value=93 Score=25.61 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCcEEEEEEEeecCCCce-EEEEEEEceE
Q psy5461 99 DSLCARAFKVVHDKHRGA-VTFFRIYSGA 126 (221)
Q Consensus 99 ~~~~~~Vfk~~~d~~~G~-i~~~RV~sG~ 126 (221)
....+.|..+++||.++- ||++.-..|.
T Consensus 39 ~~i~g~V~~IeyDPnRsA~IAlV~~~dg~ 67 (261)
T 3iz5_B 39 GYLKGVVTDIIHDPGRGAPLAKVTFRHPF 67 (261)
T ss_dssp SSSEEEEEEEEEETTTTEEEEEEECCCCS
T ss_pred CCccEEEEEEEECCCceeEEEEEEecCCC
Confidence 346799999999999765 8887766674
No 214
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=29.56 E-value=18 Score=31.31 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=40.0
Q ss_pred hhhhhcCCCCCCCCccccccCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCC
Q psy5461 2 DAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSS 65 (221)
Q Consensus 2 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa 65 (221)
+.+.+++|.|.. +.+.|+...|+++..++..|.+..-++.+|+++.++.=.+.++.
T Consensus 204 ~~l~~~lp~p~~--------~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~ 259 (405)
T 2c78_A 204 DAIDEYIPTPVR--------DVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLA 259 (405)
T ss_dssp HHHHHHSCCCCC--------CCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSS
T ss_pred HHHHhhcCCCCC--------CCCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCC
Confidence 556677887742 24567777777766678889999999999998877663445554
No 215
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=29.49 E-value=53 Score=27.01 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=35.7
Q ss_pred CCCceeeeeeeecccc--cCC---cchHHHHhhcccccc--CceeEecCCCccccHHHHHHHHHhhC
Q psy5461 23 FGDSLCARAFKVVHDK--HRG---AVTFFRIYSGAFKKN--HVPVLCGSSYKNIGVQKLMDAIVDIL 82 (221)
Q Consensus 23 ~~~~~~~~vfk~~~d~--~~g---~l~~~~l~~~~~~~~--~~Pv~~gSa~~~~Gi~~LLd~I~~~~ 82 (221)
.+-|++...+|.+... ... ++....+.+.....+ ..|++..||++ .|+.+++..++..+
T Consensus 114 ~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 114 PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 3678999999965322 111 033344433333323 37899999999 77777776666554
No 216
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=29.15 E-value=1.2e+02 Score=25.02 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.1
Q ss_pred CcEEEEEEEeecCCCce-EEEEEEEce
Q psy5461 100 SLCARAFKVVHDKHRGA-VTFFRIYSG 125 (221)
Q Consensus 100 ~~~~~Vfk~~~d~~~G~-i~~~RV~sG 125 (221)
...+.|..+++||.++- ||++.-..|
T Consensus 41 ~i~g~V~~IeyDPnRsA~IAlv~~~dg 67 (264)
T 4a17_A 41 YIRGCIRDIVHEPGRGAPLAEVAFRDP 67 (264)
T ss_dssp EEEEEEEEEECCTTCSSCEEEEEEECT
T ss_pred CcCEEEEEEEECCCCCceEEEEEecCC
Confidence 45789999999998764 888877777
No 217
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=28.38 E-value=58 Score=27.95 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCCceeeeeeeecc-cccCCcch-HHHHhhccccccCceeEecCCCccccHHHHHHHH
Q psy5461 23 FGDSLCARAFKVVH-DKHRGAVT-FFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAI 78 (221)
Q Consensus 23 ~~~~~~~~vfk~~~-d~~~g~l~-~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd~I 78 (221)
.+.+.+..++|++- ++. ... ..... ..++...+|+++.||.++.|++.|...+
T Consensus 159 ~~~~~iivlNK~DL~~~~--~~~~~~~~~-~~y~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 159 LQVEPLIVLNKIDLLDDE--GMDFVNEQM-DIYRNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp HTCEEEEEEECGGGCCHH--HHHHHHHHH-HHHHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred cCCCEEEEEECccCCCch--hHHHHHHHH-HHHHhCCCcEEEEecCCCcCHHHHHHhc
Confidence 35677888999642 221 110 11111 2233445689999999999999888754
No 218
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=28.38 E-value=17 Score=31.39 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=40.2
Q ss_pred hhhhhcCCCCCCCCccccccCCCCceeeeeeeecccccCCcchHHHHhhccccccCceeEecC
Q psy5461 2 DAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGS 64 (221)
Q Consensus 2 ~~~~~~~p~p~~~~~~~~~~~~~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gS 64 (221)
+.+.+++|.|.. +.+.|+...|+++..++..|.+..-++.+|+++.++.=.+.++
T Consensus 187 ~~l~~~~p~p~~--------~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~ 241 (397)
T 1d2e_A 187 DAVDTYIPVPTR--------DLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGH 241 (397)
T ss_dssp HHHHHHSCCCCC--------CTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEET
T ss_pred HHHHHhCCCCCC--------CCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCC
Confidence 566777887743 3456787778887778888999999999999887665334444
No 219
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=27.97 E-value=1.2e+02 Score=23.35 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=19.6
Q ss_pred CcEEEEEEEeecCCCce-EEEEEEEce
Q psy5461 100 SLCARAFKVVHDKHRGA-VTFFRIYSG 125 (221)
Q Consensus 100 ~~~~~Vfk~~~d~~~G~-i~~~RV~sG 125 (221)
...+.|..+++||.++. +|++.--.|
T Consensus 13 ~i~~~V~~IeyDP~RsA~IAlv~y~dg 39 (178)
T 1giy_D 13 GIPGRVATIEYDPNRSANIALINYADG 39 (178)
T ss_pred CccEEEEEEEECCCCCeEEEEEEecCC
Confidence 45789999999998765 777755555
No 220
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=27.70 E-value=13 Score=29.69 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.1
Q ss_pred EecCCCccccHHHHHHHHHhhCCC
Q psy5461 61 LCGSSYKNIGVQKLMDAIVDILPS 84 (221)
Q Consensus 61 ~~gSa~~~~Gi~~LLd~I~~~~Ps 84 (221)
+..||++|.|+++|++.|.+.++.
T Consensus 185 ~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 185 RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHh
Confidence 668999999999999999988754
No 221
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=26.74 E-value=1.2e+02 Score=25.62 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=38.3
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhcc----ccccCceeEecCCCccccHHHHHHHHHhhCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGA----FKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~----~~~~~~Pv~~gSa~~~~Gi~~LLd~I~~~~P 83 (221)
+-|+..+.||-+.+ .+.++...+.+.. .+ ...-|...||.+|.|+.+=||-+++.+-
T Consensus 247 ~apLLVfANKkQDl--p~Ams~~EI~e~L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 247 GRPLLVLSCISQGD--VKRMPCFYLAHELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TCCEEEEEEESSTT--SCBCCHHHHHHHTTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CCeEEEEeCCcccc--cCCCCHHHHHHHcCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 45787888863222 2455555554432 22 3455888999999999999999988764
No 222
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=26.73 E-value=94 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=19.7
Q ss_pred CCcEEEEEEEeecCCCce-EEEEEEEce
Q psy5461 99 DSLCARAFKVVHDKHRGA-VTFFRIYSG 125 (221)
Q Consensus 99 ~~~~~~Vfk~~~d~~~G~-i~~~RV~sG 125 (221)
....+.|..+++||.++. +|++.--.|
T Consensus 12 ~~i~~~V~~IeyDPnRsA~IAlv~y~dg 39 (137)
T 1rl2_A 12 DGIPGRVATIEYDPNRSANIALINYADG 39 (137)
T ss_dssp TTCCEEEEEEEEEGGGTEEEEEEEETTS
T ss_pred CCccEEEEEEEECCCCCEEEEEEEeCCC
Confidence 345789999999998765 777644444
No 223
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.72 E-value=2e+02 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=19.9
Q ss_pred CCCcEEEEEEEeecCCCce-EEEEEE
Q psy5461 98 GDSLCARAFKVVHDKHRGA-VTFFRI 122 (221)
Q Consensus 98 ~~~~~~~Vfk~~~d~~~G~-i~~~RV 122 (221)
.....+.|..+++||.++- ||++.-
T Consensus 38 ~~~i~g~V~~IeyDPnRsA~IALV~~ 63 (239)
T 3j21_B 38 EKTLRGVVEEIMHDPGRTAPVARVKF 63 (239)
T ss_dssp TCCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCccEEEEEEEECCCCCeeEEEEEe
Confidence 4567899999999999765 777763
No 224
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=23.84 E-value=8.5 Score=33.61 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=37.8
Q ss_pred CCceeeeeeeecccccCCcchHHHHhhccccccCceeEecCCCccccHHHHHH-HHHhhCCC
Q psy5461 24 GDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMD-AIVDILPS 84 (221)
Q Consensus 24 ~~~~~~~vfk~~~d~~~g~l~~~~l~~~~~~~~~~Pv~~gSa~~~~Gi~~LLd-~I~~~~Ps 84 (221)
..|++..+||.+.+ ..-....+.+.... ...+++..||+.+.|+.+|++ .|.+++|.
T Consensus 214 ~kP~i~v~NK~D~~---~~~~l~~l~~~~~~-~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~ 271 (397)
T 1wxq_A 214 NKPMVIAANKADAA---SDEQIKRLVREEEK-RGYIVIPTSAAAELTLRKAAKAGFIEYIPG 271 (397)
T ss_dssp HSCEEEEEECGGGS---CHHHHHHHHHHHHH-TTCEEEEECHHHHHHHHSCSSSCCCCSCC-
T ss_pred CCCEEEEEeCcccc---chHHHHHHHHHHhh-cCCcEEEEeccchhhHHHHHhhhhhhhcCC
Confidence 36888999996543 22223344332211 125789999999999999888 88888874
No 225
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=21.20 E-value=2.5e+02 Score=22.72 Aligned_cols=28 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred CCCcEEEEEEEeecCCCce-EEEEEEEce
Q psy5461 98 GDSLCARAFKVVHDKHRGA-VTFFRIYSG 125 (221)
Q Consensus 98 ~~~~~~~Vfk~~~d~~~G~-i~~~RV~sG 125 (221)
.....+.|..+++||.++. +|++.--.|
T Consensus 36 ~~~i~g~V~~IeyDPnRsA~IAlv~y~dg 64 (240)
T 1vq8_A 36 GDVIAGTVVDIEHDPARSAPVAAVEFEDG 64 (240)
T ss_dssp SSCCEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred cCCccEEEEEEEECCCCceeEEEEEecCC
Confidence 3456899999999999875 777754455
Done!