RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5461
(221 letters)
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 59.7 bits (144), Expect = 2e-12
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 76 DAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYN 135
+V+I P P L A AFK++ D + G +TF R+YSG G YN
Sbjct: 14 GEVVEIHPDPNG------------PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYN 61
Query: 136 IHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLK 173
+ E++ RLL A+ +EV E++ G++ AV GLK
Sbjct: 62 TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLK 99
Score = 34.6 bits (79), Expect = 0.002
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 2 DAIVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVL 61
+V+I P P L A AFK++ D + G +TF R+YSG V
Sbjct: 14 GEVVEIHPDPNG------------PLAALAFKIMADPYVGRLTFIRVYSGTLTSGS-YVY 60
Query: 62 CGSSYKNIGVQKLM 75
+ + V +L+
Sbjct: 61 NTTKGRKERVARLL 74
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 58.9 bits (142), Expect = 3e-12
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 101 LCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNE 160
A+ FKV D G V + R+Y G K G + ++ L + D EV E
Sbjct: 10 PLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEE 67
Query: 161 IQCGNIAAVTGLK 173
+ G + V +
Sbjct: 68 AEAGFVLGVPKAE 80
Score = 42.0 bits (98), Expect = 4e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 27 LCARAFKVVHDKHRGAVTFFRIYSGAFKKN 56
A+ FKV D G V + R+Y G K
Sbjct: 10 PLAKVFKVQVDPFMGQVAYLRLYRGRLKPG 39
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 55.7 bits (133), Expect = 4e-10
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 58 VPVLCGSSYKNIGVQKLMDAIVDILPS 84
PV S + IGV L++ I++ LPS
Sbjct: 241 YPVALASGEREIGVLPLLELILEALPS 267
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 54.3 bits (130), Expect = 1e-09
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 58 VPVLCGSSYKNIGVQKLMDAIVDILPS 84
PV GS+ KN GVQ L+DA+VD LPS
Sbjct: 250 TPVFLGSALKNKGVQLLLDAVVDYLPS 276
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 50.8 bits (121), Expect = 5e-09
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 101 LCARAFKVVHDKHRGA-VTFFRIYSGAFKKGQKFYNIHLD---------QSEQITRLLLA 150
L K+V +G F R+++G K GQK + + I R++L
Sbjct: 35 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLM 94
Query: 151 EADDYKEVNEIQCGNIAAVTGLK 173
+ +++ GNI + G+
Sbjct: 95 MGRFVEPIDDCPAGNIIGLVGID 117
Score = 30.8 bits (69), Expect = 0.049
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 27 LCARAFKVVHDKHRGA-VTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDIL 82
L K+V +G F R+++G K + G +Y L + +
Sbjct: 35 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRV 91
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 32.7 bits (73), Expect = 0.023
Identities = 10/69 (14%), Positives = 23/69 (33%)
Query: 16 ALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLM 75
+ Q + V +K + + + P++ S+ + L+
Sbjct: 127 LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLV 186
Query: 76 DAIVDILPS 84
AI D +P+
Sbjct: 187 KAIEDFIPT 195
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 31.8 bits (71), Expect = 0.042
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 58 VPVLCGSSYKNIGVQKLMDAIVDILPSP 85
VP++ S+ I + L++ I + + +P
Sbjct: 177 VPIIPVSALHKINIDSLIEGIEEYIKTP 204
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 30.5 bits (69), Expect = 0.043
Identities = 13/81 (16%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 112 KHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTG 171
K G + +I +G+ KK + ++Q+ ++T + + +E++ CG+ +
Sbjct: 19 KDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAI---YDEADEEISSSICGDQVRLR- 74
Query: 172 LKRERGKDKRTRVIPKPTSVV 192
++ + + V+ + V
Sbjct: 75 VRGDDSDVQTGYVLTSTKNPV 95
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 31.2 bits (69), Expect = 0.059
Identities = 11/80 (13%), Positives = 26/80 (32%)
Query: 4 IVDILPSPTERPALAMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCG 63
+V+ + + G + A V + A + A + N + ++
Sbjct: 92 VVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 151
Query: 64 SSYKNIGVQKLMDAIVDILP 83
S+ + V + + LP
Sbjct: 152 SAETGLNVDTIAAIVRKHLP 171
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 30.4 bits (67), Expect = 0.10
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 58 VPVLCGSSYKNIGVQKLMDAIVDILPSP 85
++ S+ GV +L + I+ L +
Sbjct: 149 SSIIPISAKTGFGVDELKNLIITTLNNA 176
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 29.3 bits (64), Expect = 0.21
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 46 FRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83
+ + + S+ NI + +++ I+ L
Sbjct: 127 REVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 164
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.3 bits (64), Expect = 0.27
Identities = 3/35 (8%), Positives = 14/35 (40%)
Query: 49 YSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDILP 83
+ + + S+ +++L + I +++
Sbjct: 148 FEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 28.8 bits (64), Expect = 0.33
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 53 FKKNHVPVLCGSSYKNI----------GVQKLMDAIVDILPSP 85
+K P++ GS+ + VQKL+DA+ +P P
Sbjct: 154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.4 bits (59), Expect = 0.96
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 56 NHVPVLCGSSYKNIGVQKLMDAIVDILPSPTERPAL 91
S+ V +L ++ ++P E P
Sbjct: 143 PEAEPRMLSALDERQVAELKADLLALMP---EGPFF 175
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 26.6 bits (57), Expect = 2.1
Identities = 8/57 (14%), Positives = 22/57 (38%)
Query: 25 DSLCARAFKVVHDKHRGAVTFFRIYSGAFKKNHVPVLCGSSYKNIGVQKLMDAIVDI 81
L + +++V H R + V ++ S+ G+ +L+ ++ +
Sbjct: 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215
>d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 153
Score = 25.8 bits (55), Expect = 3.4
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 92 AMFQHFGDSLCARAFKVVHDKHRGAVTFFRIYSGAFKKGQKFYNIHLDQSEQIT 145
Q ++ R + A + S F++ Q+F N L S++++
Sbjct: 102 HAKQMARETHAVRMRVSTSVDNEVAQKVYE--SIGFREDQEFKNYTLPISDELS 153
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 25.8 bits (56), Expect = 4.6
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 127 FKKGQKFYNIHLDQSEQITRLLLAEADDYKEVNEIQCGNIAAVTGLKRERGKDKRTRVIP 186
++K Y+ HL +E + D +V + ++A T E+ +D ++P
Sbjct: 334 YQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQ----DLAMGTDADGEKIRDHMRNIVP 389
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 25.3 bits (54), Expect = 6.1
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 56 NHVPVLCGSSYKNIGVQKLMDAIVDI 81
V VL S+ G + L +
Sbjct: 215 PPVRVLYLSAKTREGFEDLETLAYEH 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.408
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 814,229
Number of extensions: 36608
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 22
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.1 bits)