BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5464
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 165/337 (48%), Positives = 207/337 (61%), Gaps = 54/337 (16%)
Query: 59 LVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMV 118
LVAAVE + ++GD M AA EFADDPCSS+KRGNMVRAAR LLSAVTRLLILADM
Sbjct: 9 LVAAVE----DVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMA 64
Query: 119 DVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGE 178
DV+ LL L+VVED + K++NA ++ +L KA +L
Sbjct: 65 DVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKL------------------ 106
Query: 179 LLDNIKAFGRNATELMAQAAKRQMELKDPQXXXXXXXXXXILKKHSTMLLTASKVYVRHP 238
NI AAKRQ ELKD IL+K+ +L TAS+ ++HP
Sbjct: 107 ---NI------------MAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHP 151
Query: 239 ELAAAKENRNFVLGTTGFFTLAVTSLKKRSVS----------------LLHQVYERMVMD 282
++AA K NR+ + +++ + + S L+ +++++D
Sbjct: 152 DVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVD 211
Query: 283 PLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYM 341
PL+++E R RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQDLLSEYM
Sbjct: 212 PLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYM 271
Query: 342 ANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDH 378
N K+ S+ L AID M +KTRDLRRQLRKAV+DH
Sbjct: 272 GNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDH 308
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 98/146 (67%), Gaps = 44/146 (30%)
Query: 379 ERMVMDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQD 437
+++++DPL+++E R RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQD
Sbjct: 206 KQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQD 265
Query: 438 LLSDFM-------------------------------------------ETDIPILVLIE 454
LLS++M ET++P+LVLIE
Sbjct: 266 LLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIE 325
Query: 455 AARSGNEKEVEKAAENFADHANKLVE 480
AA++GNEKEV++ A+ F +HANKL+E
Sbjct: 326 AAKNGNEKEVKEYAQVFREHANKLIE 351
>pdb|4EHP|B Chain B, Crystal Structure Of Human Vinculin Head Domain (Residues
1-252) In Complex With Alpha-Catenin (Residues 277-382)
Length = 111
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 272 LHQVYERMVMDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVR 330
L+ +++++DPL+++E R RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVR
Sbjct: 11 LNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVR 70
Query: 331 QALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQL 371
QALQDLLSEYM N K+ S+ L AID M +KTRDLRRQL
Sbjct: 71 QALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQL 111
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 64/66 (96%), Gaps = 1/66 (1%)
Query: 379 ERMVMDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQD 437
+++++DPL+++E R RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQD
Sbjct: 16 KQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQD 75
Query: 438 LLSDFM 443
LLS++M
Sbjct: 76 LLSEYM 81
>pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-Catenin And Alpha-
Catenin
Length = 205
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 116/220 (52%), Gaps = 58/220 (26%)
Query: 56 AHVLVAAVEKATENFIERGDAMSL-------------------------AAREFADDPCS 90
AHVL A+VE+ATENF+E+GD ++ AA EFADDPCS
Sbjct: 2 AHVLAASVEQATENFLEKGDKIAKESQFLKEELVVAVEDVRKQGDLXKSAAGEFADDPCS 61
Query: 91 SLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNI 150
S+KRGN VRAAR LLSAVTRLLILAD DV+ LL L+VVED + K++NA ++ +L
Sbjct: 62 SVKRGNXVRAARALLSAVTRLLILADXADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQY 121
Query: 151 KAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQXX 210
KA +L NI AAKRQ ELKD
Sbjct: 122 KALKPEVDKL---------------------NIX------------AAKRQQELKDVGNR 148
Query: 211 XXXXXXXXILKKHSTMLLTASKVYVRHPELAAAKENRNFV 250
IL+K+ +L TAS+ ++HP++AA K NR+ +
Sbjct: 149 DQXAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLI 188
>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain
Length = 181
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 104/185 (56%), Gaps = 33/185 (17%)
Query: 66 ATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLK 125
A E+ ++GD M AA EFADDPCSS+KRGNMVRAAR LLSAVTRLLILADM DV+ LL
Sbjct: 12 AVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLV 71
Query: 126 SLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKA 185
L+VVED + K++NA ++ +L KA +L NI
Sbjct: 72 QLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKL---------------------NI-- 108
Query: 186 FGRNATELMAQAAKRQMELKDPQXXXXXXXXXXILKKHSTMLLTASKVYVRHPELAAAKE 245
AAKRQ ELKD IL+K+ +L TAS+ ++HP++AA K
Sbjct: 109 ----------MAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKA 158
Query: 246 NRNFV 250
NR+ +
Sbjct: 159 NRDLI 163
>pdb|4E18|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That
Co-Activates Vinculin
Length = 59
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/53 (96%), Positives = 52/53 (98%)
Query: 291 RPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMAN 343
RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQDLLSEYM N
Sbjct: 5 RPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGN 57
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/51 (94%), Positives = 51/51 (100%)
Query: 393 RPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFM 443
RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQDLLS++M
Sbjct: 5 RPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYM 55
>pdb|4E17|B Chain B, Alpha-E-Catenin Is An Autoinhibited Molecule That
Co-Activates Vinculin
Length = 40
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 34/36 (94%)
Query: 308 MADSNCTRDDRRERIVAECNAVRQALQDLLSEYMAN 343
+ DS+CTRDDRRERIVAECNAVRQALQDLLSEYM N
Sbjct: 3 IQDSSCTRDDRRERIVAECNAVRQALQDLLSEYMGN 38
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 33/34 (97%)
Query: 410 MADSNCTRDDRRERIVAECNAVRQALQDLLSDFM 443
+ DS+CTRDDRRERIVAECNAVRQALQDLLS++M
Sbjct: 3 IQDSSCTRDDRRERIVAECNAVRQALQDLLSEYM 36
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Query: 431 VRQALQDLLSD-FMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVE 480
+R+A+ D +SD F+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+E
Sbjct: 6 LRKAVXDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIE 56
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Query: 434 ALQDLLSD-FMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVE 480
A+ D +SD F+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+E
Sbjct: 3 AVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIE 50
>pdb|3CGH|A Chain A, Crystal Structure Of A Susd Homolog (Bt_3984) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 516
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 382 VMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAE-CNAVRQALQDLLS 440
V P AY + P+ ++ +S + + + +++++ERI+ + A Q + +
Sbjct: 391 VNKPTAYTD---PAGTNTYQNALSNITIKWNDSADKEEKQERIIVQKWIANWQLGNEAWA 447
Query: 441 DFMETDIPILVLIEAARSGNEKEVEKAA 468
DF T P L+ ++ +SG + EK A
Sbjct: 448 DFRRTGYPKLIPVKENKSGGVVDSEKGA 475
>pdb|2Y2Z|A Chain A, Ligand-Free Form Of Tetr-Like Repressor Simr
pdb|2Y30|A Chain A, Simocyclinone D8 Bound Form Of Tetr-Like Repressor Simr
pdb|2Y30|B Chain B, Simocyclinone D8 Bound Form Of Tetr-Like Repressor Simr
pdb|2Y31|A Chain A, Simocyclinone C4 Bound Form Of Tetr-Like Repressor Simr
pdb|2Y31|B Chain B, Simocyclinone C4 Bound Form Of Tetr-Like Repressor Simr
pdb|3ZQL|A Chain A, Dna-Bound Form Of Tetr-Like Repressor Simr
pdb|3ZQL|B Chain B, Dna-Bound Form Of Tetr-Like Repressor Simr
pdb|3ZQL|C Chain C, Dna-Bound Form Of Tetr-Like Repressor Simr
pdb|3ZQL|D Chain D, Dna-Bound Form Of Tetr-Like Repressor Simr
Length = 267
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 233 VYVRHPELAAAKEN------------RNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMV 280
+++RHP LA A N + FVLGT G F L V L + L + E V
Sbjct: 110 LWLRHPWLATAWRNGHPVWGPNSLRQQEFVLGTLGVFDLQVDELLS-LIGLYNGYVESFV 168
Query: 281 MDPLAYNERVR 291
+ + + E R
Sbjct: 169 RNEVGWLEEAR 179
>pdb|3IZR|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 304
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 331 QALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNE 390
+ Q SEY+ D E L + + R + + +K H+R + L Y +
Sbjct: 217 EKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQ 276
Query: 391 RVRPSLEERLESIISGAA 408
R + SL ERL ++ S A
Sbjct: 277 R-KASLVERLNALNSSAG 293
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 96/269 (35%), Gaps = 65/269 (24%)
Query: 15 PKNLEIRTMSVEKTLEPLVLQVTTLVNTXXXXXXXXXXXXXAHVLVAAVEKATENFIERG 74
P+ T ++E LEP+ Q++ LV V+AV+ A N + G
Sbjct: 2 PRMPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVSAVQAAVSNLVRVG 61
Query: 75 D---------------------------AMSLAAREFADDPCSSLKRGNMVRAARNLLSA 107
+ AA+ DP S R ++ +R +LS
Sbjct: 62 KETVQTTEDQILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLIDGSRGILSG 121
Query: 108 VTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKH 167
+ LL+ D +V K +RV + LE + A E+++ ++
Sbjct: 122 TSDLLLTFDEAEVR---KIIRVCKGILEYLTVA----EVVETME---------------- 158
Query: 168 GAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQXXXXXXXXXXILKKHSTML 227
+L+ K G T++ +RQ EL + +K+ +L
Sbjct: 159 ----------DLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVL 208
Query: 228 LTASKVYV-----RHPELAAAKENRNFVL 251
++A K++V + + A +NRNF +
Sbjct: 209 ISAMKIFVTTKNTKSQGIEEALKNRNFTV 237
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 30 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 89
Query: 346 IKD 348
+ D
Sbjct: 90 LVD 92
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 43 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 102
Query: 346 IKD 348
+ D
Sbjct: 103 LVD 105
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 44 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 103
Query: 346 IKD 348
+ D
Sbjct: 104 LVD 106
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 40 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 99
Query: 346 IKD 348
+ D
Sbjct: 100 LVD 102
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 39 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 98
Query: 346 IKD 348
+ D
Sbjct: 99 LVD 101
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 93
Query: 346 IKD 348
+ D
Sbjct: 94 LVD 96
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 29 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 88
Query: 346 IKD 348
+ D
Sbjct: 89 LVD 91
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 93
Query: 346 IKD 348
+ D
Sbjct: 94 LVD 96
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 36 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 95
Query: 346 IKD 348
+ D
Sbjct: 96 LVD 98
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 40 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 99
Query: 346 IKD 348
+ D
Sbjct: 100 LVD 102
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 93
Query: 346 IKD 348
+ D
Sbjct: 94 LVD 96
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 34 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 93
Query: 346 IKD 348
+ D
Sbjct: 94 LVD 96
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 35 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 94
Query: 346 IKD 348
+ D
Sbjct: 95 LVD 97
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 286 YNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMS 345
YN + +++ + +S A +A++N + + +R+V V Q +++EYM N S
Sbjct: 42 YNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGS 101
Query: 346 IKD 348
+ D
Sbjct: 102 LVD 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,959,650
Number of Sequences: 62578
Number of extensions: 363011
Number of successful extensions: 1083
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1029
Number of HSP's gapped (non-prelim): 59
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)