Query psy5464
Match_columns 481
No_of_seqs 150 out of 190
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 18:15:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3681|consensus 100.0 3.6E-93 7.8E-98 768.2 40.0 371 17-480 1-415 (835)
2 PF01044 Vinculin: Vinculin fa 100.0 2E-69 4.3E-74 607.9 36.4 404 19-480 1-533 (968)
3 PF01044 Vinculin: Vinculin fa 99.4 1.7E-09 3.6E-14 124.0 39.3 363 85-480 177-598 (968)
4 KOG3681|consensus 99.3 3E-10 6.5E-15 125.7 22.3 99 380-479 272-385 (835)
5 PF08913 VBS: Vinculin Binding 84.7 24 0.00052 32.4 12.3 91 137-227 25-117 (125)
6 PLN03094 Substrate binding sub 57.9 2.7E+02 0.0059 30.0 14.9 119 104-238 232-353 (370)
7 KOG0994|consensus 52.0 5.9E+02 0.013 32.1 24.3 41 422-462 1699-1741(1758)
8 PF05482 Serendipity_A: Serend 48.1 2.8E+02 0.0061 31.6 12.6 47 292-340 176-222 (552)
9 PF15030 DUF4527: Protein of u 43.1 3.3E+02 0.0071 28.3 11.2 112 351-471 12-132 (277)
10 smart00307 ILWEQ I/LWEQ domain 40.3 2.7E+02 0.0058 27.7 10.0 89 95-236 57-145 (200)
11 KOG4368|consensus 36.8 5E+02 0.011 30.2 12.3 147 299-475 119-281 (757)
12 PF12732 YtxH: YtxH-like prote 33.7 2.1E+02 0.0046 23.2 7.0 52 415-480 22-73 (74)
13 KOG3100|consensus 33.4 24 0.00051 34.9 1.5 47 383-429 140-189 (206)
14 TIGR01834 PHA_synth_III_E poly 32.4 4.9E+02 0.011 27.7 11.0 53 316-373 252-307 (320)
15 PF11932 DUF3450: Protein of u 32.4 5.1E+02 0.011 25.7 13.4 86 316-424 48-133 (251)
16 PF09712 PHA_synth_III_E: Poly 32.2 1E+02 0.0022 31.9 5.9 49 320-373 242-290 (293)
17 PF12205 GIT1_C: G protein-cou 30.7 2.4E+02 0.0052 26.0 7.4 78 318-412 36-113 (123)
18 COG4842 Uncharacterized protei 30.5 1.8E+02 0.0039 25.1 6.3 67 302-375 13-81 (97)
19 cd07619 BAR_Rich2 The Bin/Amph 28.6 6.6E+02 0.014 25.8 15.2 98 17-132 19-117 (248)
20 PF12732 YtxH: YtxH-like prote 27.9 2.4E+02 0.0053 22.9 6.4 31 312-342 21-51 (74)
21 PRK15039 transcriptional repre 26.4 4.3E+02 0.0094 23.0 7.9 26 423-448 37-62 (90)
22 COG1578 Uncharacterized conser 25.7 4.2E+02 0.0091 27.8 8.9 66 366-437 99-167 (285)
23 PF10428 SOG2: RAM signalling 25.3 9.3E+02 0.02 26.5 14.0 65 171-235 380-445 (445)
24 KOG0905|consensus 25.2 1.9E+02 0.0041 36.0 7.1 105 329-446 506-612 (1639)
25 TIGR00237 xseA exodeoxyribonuc 24.2 9.1E+02 0.02 26.2 11.6 75 354-443 299-373 (432)
26 PF13581 HATPase_c_2: Histidin 24.0 2.1E+02 0.0045 24.3 5.6 18 156-173 35-52 (125)
27 KOG3100|consensus 23.4 61 0.0013 32.2 2.4 63 265-327 124-189 (206)
28 PF01997 Translin: Translin fa 23.2 3E+02 0.0064 26.6 7.1 81 316-404 1-81 (200)
29 cd07646 I-BAR_IMD_IRSp53 Inver 22.7 6.1E+02 0.013 26.0 9.2 15 208-222 125-139 (232)
30 PRK00286 xseA exodeoxyribonucl 22.6 9.7E+02 0.021 25.7 12.6 75 354-443 304-378 (438)
31 PF05527 DUF758: Domain of unk 20.8 8.2E+02 0.018 24.2 11.4 69 410-481 104-183 (186)
32 COG3461 Uncharacterized conser 20.6 4.8E+02 0.011 23.3 7.1 80 141-252 7-87 (103)
33 PRK10132 hypothetical protein; 20.3 6.3E+02 0.014 22.7 9.1 50 317-371 12-61 (108)
34 PF03127 GAT: GAT domain; Int 20.3 5.5E+02 0.012 21.9 11.0 59 316-375 3-61 (100)
35 PF09141 Talin_middle: Talin, 20.1 3.3E+02 0.0072 26.3 6.5 51 58-112 82-132 (161)
No 1
>KOG3681|consensus
Probab=100.00 E-value=3.6e-93 Score=768.17 Aligned_cols=371 Identities=58% Similarity=0.812 Sum_probs=358.5
Q ss_pred CccceehhhhhhhhHHhhhhhhhcccC--CCCcccCCcchhhhhHHHHHHHHHHHHHHhh--------------------
Q psy5464 17 NLEIRTMSVEKTLEPLVLQVTTLVNTK--GPSKKKKGRSKRAHVLVAAVEKATENFIERG-------------------- 74 (481)
Q Consensus 17 ~lEIrtksVE~~LePLv~QVTtLVn~k--~~~~k~~g~s~~a~~~~~aV~~A~enfv~~G-------------------- 74 (481)
++||||++||++|+||++|||||||++ +|+++|+|++++++++|+.+++|++||+.+|
T Consensus 1 ~lei~T~tVE~~LePlv~QVTtLVn~~e~~~~~~k~~~~~~a~v~v~s~~~a~~~~v~k~~~ia~e~~~l~~em~~A~~~ 80 (835)
T KOG3681|consen 1 MLEIRTRTVESTLEPLVQQVTTLVNTKEEGPSDGKAGRSKTAPVAVASAEVATENFVGKGEKIAEEDQILKQEMPAALEE 80 (835)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHhccccCCCccccccccchhHHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHH
Confidence 479999999999999999999999997 7888999999999999999999999999999
Q ss_pred -----HHHHHHHhHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHH
Q psy5464 75 -----DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDN 149 (481)
Q Consensus 75 -----~~m~~Aa~~f~~dp~s~~~R~~mvraaR~lLs~vtrlLilaD~vdV~~il~~~~~v~~~l~~~~~~~s~~el~~~ 149 (481)
+.|..++++|.+||||++||++||+|||+||||||||||||||+||++||++++.|+++|++++++.|++||+++
T Consensus 81 V~~~~~~m~~aa~~~~~Dp~s~~~R~~~i~aaR~LLsavtrlLllaD~~dV~~ii~~~~~V~~~l~~le~~~t~~dlv~~ 160 (835)
T KOG3681|consen 81 VRKAGDLMKQAAREFDDDPCSVPKRGNLIRAARGLLSAVTRLLLLADMVDVKKIIRSCKKVLETLEVLENVNTMQDLVQI 160 (835)
T ss_pred HHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHH
Q psy5464 150 IKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLT 229 (481)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar~~Lkk~~~mL~t 229 (481)
|++|| |+|++|++++++||+|||||.|||+|++||+.||+++|||||
T Consensus 161 ~k~lg---------------------------------~~m~~l~~~~~~RqqeLk~~~~rd~laaar~~lk~~~p~L~t 207 (835)
T KOG3681|consen 161 FKQLG---------------------------------PEMVKLAHMAGKRQQELKDPKHRDQLAAARAVLKKLAPMLLT 207 (835)
T ss_pred HHHHh---------------------------------HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHH
Confidence 99999 999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCcHHHHHHHHhhHhhh-----hHhHhhccCc-----------hHHHHHHHHHHHHhhccCcccccc-cccc
Q psy5464 230 ASKVYVRHPELAAAKENRNFVLGTT-----GFFTLAVTSL-----------KKRSVSLLHQVYERMVMDPLAYNE-RVRP 292 (481)
Q Consensus 230 a~k~~~rhp~~~~a~~nR~~v~~~~-----~i~~~~~~~~-----------~~~~~~~l~~~~~~~~~dp~~~~~-~~r~ 292 (481)
|||+|||||+|+.+++||||||.+| +|++++|+.. .|.+++++.+|++++.++|++|++ +.||
T Consensus 208 ask~~lrhp~~~~a~~NRd~v~~~m~~aln~I~~v~q~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~l~~~~~~~r~ 287 (835)
T KOG3681|consen 208 ASKTCLRHPNCESAKKNRDYVFDQMSDALNEIIRVLQLTSPDEDTSESSGSAGKLASALIDFKKNIAIDPLTNPEARSRP 287 (835)
T ss_pred HHHHHHcCccHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcchhccchhHHHHHHhHHHHHHHhhhhhchhhccCc
Confidence 9999999999999999999999999 6778887421 355789999999999999999998 9999
Q ss_pred cHHHHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHH
Q psy5464 293 SLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLR 372 (481)
Q Consensus 293 ~Le~~Le~Iis~a~~~aDs~~Tr~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLr 372 (481)
+||++||+||+||++||||.| +|+|||+|+++|++++|+|++++++||++.|+++.+++++.+|++|+++++|||||||
T Consensus 288 ~le~~le~Iis~aa~~aDs~~-~d~rreri~a~~~al~q~l~d~l~E~~~~~~~k~~~~~l~~ai~~l~kkl~dLrrqLr 366 (835)
T KOG3681|consen 288 SLEVRLEQIISGAALMADSCC-RDLRRERIVAECNALRQALQDLLSEYQSNAGRKGRSPALELAIDQLTKKLKDLKRQLR 366 (835)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccccChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999977 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcCccccccccccchHHHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q psy5464 373 KAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVL 452 (481)
Q Consensus 373 kAavDhV~~~~dpl~~~~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn~lRqaLqdLlsey~~~~~~l~~l 452 (481)
+|++||| .| .|+.+.+||+.+
T Consensus 367 ~a~~d~i-------------------------------Sd----------------------------~fldt~tpllll 387 (835)
T KOG3681|consen 367 KAATDHV-------------------------------SD----------------------------SFLDTTTPLLLL 387 (835)
T ss_pred HHHHHHH-------------------------------HH----------------------------HHHhhhhHHHHH
Confidence 9999999 77 899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhHhhh
Q psy5464 453 IEAARSGNEKEVEKAAENFADHANKLVE 480 (481)
Q Consensus 453 ~~aA~~g~~~~~~e~~~~f~e~~~~Lve 480 (481)
+.||+.||++.++||+++|+||+++|+|
T Consensus 388 ~eaa~~G~ee~~~eya~~f~eha~~lve 415 (835)
T KOG3681|consen 388 IEAAKAGNEEEVKEYAANFREHANKLVE 415 (835)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997
No 2
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=100.00 E-value=2e-69 Score=607.88 Aligned_cols=404 Identities=45% Similarity=0.634 Sum_probs=345.4
Q ss_pred cceehhhhhhhhHHhhhhhhhcccCCCCcccCCcchhhhhHHHHHHHHHHHHHHhh------------------------
Q psy5464 19 EIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERG------------------------ 74 (481)
Q Consensus 19 EIrtksVE~~LePLv~QVTtLVn~k~~~~k~~g~s~~a~~~~~aV~~A~enfv~~G------------------------ 74 (481)
|||||+||++|+||++||||||++++++++++|.++..++++++|+.||+|||++|
T Consensus 1 ~i~TksvE~iLePl~~qVt~Lv~~~e~~~~~~~~~~~~~~~~~aV~~Av~~lv~vg~~ia~~~~d~~lk~eM~~A~~~v~ 80 (968)
T PF01044_consen 1 EIRTKSVEQILEPLAQQVTTLVITHEESEKSKGASPDLQRPVQAVEEAVENLVEVGEEIANESPDEILKQEMPEACEEVR 80 (968)
T ss_dssp SSSBHHHHHHHHHHHHHHHHHHHHHHTTCTTTSTSGGTHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999888777788888999999999999999999
Q ss_pred ---HHHHHHHhHhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHH
Q psy5464 75 ---DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIK 151 (481)
Q Consensus 75 ---~~m~~Aa~~f~~dp~s~~~R~~mvraaR~lLs~vtrlLilaD~vdV~~il~~~~~v~~~l~~~~~~~s~~el~~~~~ 151 (481)
+.|..++++|.+|||++++|+.||+|||+||++|||||||||+++|++|++.+++|+++|+++++++|++||+++|+
T Consensus 81 ~ag~~l~~aa~~l~~dP~s~~~R~~lv~aar~lL~~vt~lLllaD~~~Vr~Ii~~~~~v~~~l~~~e~~~s~~el~~~~~ 160 (968)
T PF01044_consen 81 DAGKNLLQAAQELRDDPCSSPKRKKLVRAARGLLSGVTRLLLLADMADVRKIIRACKKVLDYLERLESAESMEELVQAFK 160 (968)
T ss_dssp HHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGCT-SSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHhh
Q psy5464 152 AFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTAS 231 (481)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar~~Lkk~~~mL~ta~ 231 (481)
+|| +.|++|++++++||+||+||.+|++|.+||++||+++||||||+
T Consensus 161 ~f~---------------------------------~~~~~l~~~~~~Rq~eL~~~~~r~~l~~a~~~Lk~~~p~L~ts~ 207 (968)
T PF01044_consen 161 DFG---------------------------------PEMVELAKLTGRRQQELKDPEHRDQLAAARAVLKKCSPMLLTSS 207 (968)
T ss_dssp HHH---------------------------------HHHHHHHHHHHHHHCTBSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---------------------------------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 999 99999999999999999999999999999999999999999999
Q ss_pred hhhhcC---C--CcHHHHHHHHhhHhhh-----hHhHhhccCch--------------------H-HHHHHHHHHHHh--
Q psy5464 232 KVYVRH---P--ELAAAKENRNFVLGTT-----GFFTLAVTSLK--------------------K-RSVSLLHQVYER-- 278 (481)
Q Consensus 232 k~~~rh---p--~~~~a~~nR~~v~~~~-----~i~~~~~~~~~--------------------~-~~~~~l~~~~~~-- 278 (481)
|+|++| | ++++|++||||||++| .|.+++|+..+ + ++.++++.|+..
T Consensus 208 k~~l~h~~~p~~~~~~a~~nRd~v~~~m~~al~~Ii~vlq~~~~ded~~~~~~~~~~~~~~~~~~~~l~~a~d~l~~~~a 287 (968)
T PF01044_consen 208 KTYLRHPNDPGKEVEEARENRDYVFKQMRDALNEIIRVLQLTSYDEDEWDSDDLEVMKSALAGIGSKLASALDWLDDPNA 287 (968)
T ss_dssp HHHHHHHTSTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTHTSSCSCCCCHHHHHHHHHHHHHHHCTHHHHHHHHCSTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999 9 9999999999999999 46677774322 1 377889999887
Q ss_pred --------hc---cCcccccc-cccccHHHHHHHHHHHHHhhhhcCCCChhhHH-----HHH-----HHHH-HHHHHHHH
Q psy5464 279 --------MV---MDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRE-----RIV-----AECN-AVRQALQD 335 (481)
Q Consensus 279 --------~~---~dp~~~~~-~~r~~Le~~Le~Iis~a~~~aDs~~Tr~~rRe-----rIv-----aeCn-~lRqaLqd 335 (481)
+. ++|..|.+ +++|+++++|+.||++++.|||+.||++++++ +|+ ++|+ .+++.+.+
T Consensus 288 ~~g~~ge~~~r~I~~~a~~~~~~~~p~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~a~~l~e~~~~l~~~v~~ 367 (968)
T PF01044_consen 288 SPGGAGEKAIRQIVDPATYIAERCRPSLEERLERIISGAALMADSLCTRRERGEGASPQAIVLARQLAECNGELSQLVEQ 367 (968)
T ss_dssp -TTTCCHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHCHHCHGGSHHHHHCHHHHHHHH----HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 55 88999988 89999999999999999999999999999999 887 8887 34444444
Q ss_pred HHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhc-CccccccccccchHHHHHHHhhhhhhhhccc
Q psy5464 336 LLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVM-DPLAYNERVRPSLEERLESIISGAALMADSN 414 (481)
Q Consensus 336 LLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLrkAavDhV~~~~-dpl~~~~~~r~~Le~~Le~ii~g~a~~ADsa 414 (481)
.++.+... | ...+...+-.|+ +|+..-+ +|... -+....+.|+.+++....+||+.
T Consensus 368 al~~~~~~-~-------~~~~~~~~~~kl------------~qA~~wl~~p~~d---d~g~g~~AL~~lv~e~~~~A~~~ 424 (968)
T PF01044_consen 368 ALQNVEKS-G-------GAQAAHTVAGKL------------EQAQRWLANPGVD---DGGAGRQALRDLVEEARKLADSS 424 (968)
T ss_dssp HHHHHHHH-H-------HHHHHHHHHHHH------------HHHHHHHCSTSS-----SCHHHHHHHHHHHHHHHHHHTS
T ss_pred cccccccc-c-------cccccccccccc------------ccccccccccccc---cHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444321 1 111222233333 3442222 34432 24678899999999999999988
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHhhcchhHHHHHH
Q psy5464 415 CTRDDRRERIVAECNAVRQALQDLL----------------------------------------SDFMETDIPILVLIE 454 (481)
Q Consensus 415 ~Tr~e~rE~Iv~~Cn~lRqaLqdLl----------------------------------------sey~~~~~~l~~l~~ 454 (481)
+ +++|++|++.|+.+++..++|. ..|..++.||..|+.
T Consensus 425 ~--~~~R~~Il~lc~~i~~l~~qL~dL~~~~~~~spea~~la~~L~~~l~~L~~~l~~a~~~qv~d~F~d~~~pL~~L~~ 502 (968)
T PF01044_consen 425 D--PEEREEILELCDEIEQLTNQLADLEMRGEGDSPEAKALAEQLSQKLDDLRQQLQKAVVDQVSDTFTDTTTPLKELVE 502 (968)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHCHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSSSHHHHHHHH
T ss_pred c--cchHHhHHHHHHHHHHhcchhhhhhhccCCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8 8899999999999999444443 234589999999999
Q ss_pred HHhc-----CCHHHHHHHHHHHHHHHhHhhh
Q psy5464 455 AARS-----GNEKEVEKAAENFADHANKLVE 480 (481)
Q Consensus 455 aA~~-----g~~~~~~e~~~~f~e~~~~Lve 480 (481)
||.. ||++.+.+|++.|++|+++|++
T Consensus 503 Aa~~~~~~~g~e~~~~~~a~~F~~ha~~l~~ 533 (968)
T PF01044_consen 503 AAKAPSGTPGREENFEEKAQNFQEHADQLVE 533 (968)
T ss_dssp HHHT-TTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999986
No 3
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=99.42 E-value=1.7e-09 Score=123.99 Aligned_cols=363 Identities=19% Similarity=0.195 Sum_probs=210.8
Q ss_pred hcCCCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------HHHHhhHHHHHHHHHHhcCCh----
Q psy5464 85 ADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHL-----------------LLKSLRVVEDDLEKVKNASSQ---- 143 (481)
Q Consensus 85 ~~dp~s~~~R~~mvraaR~lLs~vtrlLilaD~vdV~~-----------------il~~~~~v~~~l~~~~~~~s~---- 143 (481)
..|--++..|..| .+||..|.--+-+|+.+=-+-++. +.+.++...+.+..+-...+.
T Consensus 177 q~eL~~~~~r~~l-~~a~~~Lk~~~p~L~ts~k~~l~h~~~p~~~~~~a~~nRd~v~~~m~~al~~Ii~vlq~~~~ded~ 255 (968)
T PF01044_consen 177 QQELKDPEHRDQL-AAARAVLKKCSPMLLTSSKTYLRHPNDPGKEVEEARENRDYVFKQMRDALNEIIRVLQLTSYDEDE 255 (968)
T ss_dssp HCTBSSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTHTSSCSCC
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3577777777555 578888888888888776555555 233333333334333333333
Q ss_pred ---HHHHHHHHHhhhhHHHHHHHHhhccCCC--CccchhhhhhhhhhhhhhHH-HHHHHHHHHHhhcCChhHHHHHHHHH
Q psy5464 144 ---GELLDNIKAFGRNATELMAQAAKHGAEG--SSATQGELLDNIKAFGRNAT-ELMAQAAKRQMELKDPQLRDDLAAAR 217 (481)
Q Consensus 144 ---~el~~~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~~~~~~Rq~dLkd~~~r~~l~aar 217 (481)
.++...++.++ ....-|.+|..+.... +...-|| .+. ++...+ .+..+...|..++.|...-
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~l~~a~d~l~~~~a~~g~~ge----------~~~r~I~~~a-~~~~~~~~p~~~~~l~~~~ 323 (968)
T PF01044_consen 256 WDSDDLEVMKSALA-GIGSKLASALDWLDDPNASPGGAGE----------KAIRQIVDPA-TYIAERCRPSLEERLERII 323 (968)
T ss_dssp CCHHHHHHHHHHHH-HHHCTHHHHHHHHCSTTS-TTTCCH----------HHHHHHHHHH-HHHHHTSSCCHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccc----------cccccccccc-ccccccccccccccccccc
Confidence 23333333333 1122455555554332 2222221 121 222222 2334566788888885543
Q ss_pred HHHHHhhHHHHHhhhhhhcCCC-----cHH---HHHHHH-hhHhhh--hHhHhhc---cCchHHHHHHHHHHHHhhccCc
Q psy5464 218 AILKKHSTMLLTASKVYVRHPE-----LAA---AKENRN-FVLGTT--GFFTLAV---TSLKKRSVSLLHQVYERMVMDP 283 (481)
Q Consensus 218 ~~Lkk~~~mL~ta~k~~~rhp~-----~~~---a~~nR~-~v~~~~--~i~~~~~---~~~~~~~~~~l~~~~~~~~~dp 283 (481)
.-+ ..|.=++ -+.=.+-+ ... .....+ .+.+.| ++.++-. ..+...+...|++...-+ .+|
T Consensus 324 ~~~---~~~~d~~-~~~~~~~~~~~~~~~~~a~~l~e~~~~l~~~v~~al~~~~~~~~~~~~~~~~~kl~qA~~wl-~~p 398 (968)
T PF01044_consen 324 SGA---ALMADSL-CTRRERGEGASPQAIVLARQLAECNGELSQLVEQALQNVEKSGGAQAAHTVAGKLEQAQRWL-ANP 398 (968)
T ss_dssp HHH---HHHHHHH-HHHCHHCHGGSHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CST
T ss_pred ccc---ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 322 2222222 22211211 111 111111 122222 1111111 012223444555554443 456
Q ss_pred ccccccccccHHHHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHH
Q psy5464 284 LAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRK 363 (481)
Q Consensus 284 ~~~~~~~r~~Le~~Le~Iis~a~~~aDs~~Tr~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kk 363 (481)
.. ..+..+.+.|+.|++++.++||+.+ +++|++|+..|+.+++..++|..-|+...| .+++......++.++
T Consensus 399 ~~---dd~g~g~~AL~~lv~e~~~~A~~~~--~~~R~~Il~lc~~i~~l~~qL~dL~~~~~~---~spea~~la~~L~~~ 470 (968)
T PF01044_consen 399 GV---DDGGAGRQALRDLVEEARKLADSSD--PEEREEILELCDEIEQLTNQLADLEMRGEG---DSPEAKALAEQLSQK 470 (968)
T ss_dssp SS-----SCHHHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHHHHHHHHCHCSCC---SSHHHHHHHHHHHHH
T ss_pred cc---ccHHHHHHHHHHHHHHHHHHHhccc--cchHHhHHHHHHHHHHhcchhhhhhhccCC---Ccccccccccchhhh
Confidence 43 2367889999999999999999754 889999999999999988888887775444 445667778999999
Q ss_pred hHHHHHHHHHHHHhhhhhhc-CccccccccccchHHHHHHHhh-----h-hhhhhcccccchhHHHHHHHHHHHHHHHH-
Q psy5464 364 TRDLRRQLRKAVVDHERMVM-DPLAYNERVRPSLEERLESIIS-----G-AALMADSNCTRDDRRERIVAECNAVRQAL- 435 (481)
Q Consensus 364 trDLRRqLrkAavDhV~~~~-dpl~~~~~~r~~Le~~Le~ii~-----g-~a~~ADsa~Tr~e~rE~Iv~~Cn~lRqaL- 435 (481)
++||+++|+++++|||--.| |+. . -|...+++... | .+.+.+.+..+++|-+++++.|+.+.+.-
T Consensus 471 l~~L~~~l~~a~~~qv~d~F~d~~------~-pL~~L~~Aa~~~~~~~g~e~~~~~~a~~F~~ha~~l~~vA~lva~~s~ 543 (968)
T PF01044_consen 471 LDDLRQQLQKAVVDQVSDTFTDTT------T-PLKELVEAAKAPSGTPGREENFEEKAQNFQEHADQLVEVARLVAAMSC 543 (968)
T ss_dssp HHHHHHHHHHHHHCHHHHHTTSSS------H-HHHHHHHHHHT-TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------C-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999992222 211 1 13334444433 3 34467788899999999999999999843
Q ss_pred HH-HHHH-------Hhhcchh--HHHHHHHHhcCCHHHHHHHHHHHHHHHhHhhh
Q psy5464 436 QD-LLSD-------FMETDIP--ILVLIEAARSGNEKEVEKAAENFADHANKLVE 480 (481)
Q Consensus 436 qd-Llse-------y~~~~~~--l~~l~~aA~~g~~~~~~e~~~~f~e~~~~Lve 480 (481)
.+ ...+ ..+...| +.+.+..+.+|+++.+.|+.+.|.++|++-++
T Consensus 544 ~d~~~v~~I~~aa~~l~~L~pqvi~Aa~~l~~~P~sk~A~e~le~~~~~W~~~v~ 598 (968)
T PF01044_consen 544 TDEETVKEIRHAAEQLEKLTPQVINAARILAANPSSKAAKEHLEVFREAWEDAVE 598 (968)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 22 2211 2233333 34447777899999999999999999998764
No 4
>KOG3681|consensus
Probab=99.29 E-value=3e-10 Score=125.72 Aligned_cols=99 Identities=52% Similarity=0.774 Sum_probs=82.0
Q ss_pred hhhcCccccc-cccccchHHHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh--------cchhH-
Q psy5464 380 RMVMDPLAYN-ERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFME--------TDIPI- 449 (481)
Q Consensus 380 ~~~~dpl~~~-~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn~lRqaLqdLlsey~~--------~~~~l- 449 (481)
.+.++|+.|+ ++.||++|+.||.||+|+++++|+.| +++|||+|+++||++||+|+++++||++ ..+++
T Consensus 272 ~~~~~~l~~~~~~~r~~le~~le~Iis~aa~~aDs~~-~d~rreri~a~~~al~q~l~d~l~E~~~~~~~k~~~~~l~~a 350 (835)
T KOG3681|consen 272 NIAIDPLTNPEARSRPSLEVRLEQIISGAALMADSCC-RDLRRERIVAECNALRQALQDLLSEYQSNAGRKGRSPALELA 350 (835)
T ss_pred HHHhhhhhchhhccCchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccccChhHHHH
Confidence 4568999998 49999999999999999999999999 9999999999999999999999999996 22222
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHHHHHhHhh
Q psy5464 450 -----LVLIEAARSGNEKEVEKAAENFADHANKLV 479 (481)
Q Consensus 450 -----~~l~~aA~~g~~~~~~e~~~~f~e~~~~Lv 479 (481)
.-|+.+=+.-....+..-++.|.++.-.|+
T Consensus 351 i~~l~kkl~dLrrqLr~a~~d~iSd~fldt~tpll 385 (835)
T KOG3681|consen 351 IDQLTKKLKDLKRQLRKAATDHVSDSFLDTTTPLL 385 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 334555566666777777888887766553
No 5
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions. Talin, in turn, links integrins to the actin cytoskeleton. The consensus sequence for Vinculin binding sites is LxxAAxxVAxxVxxLIxxA, with a secondary structure prediction of four amphipathic helices. The hydrophobic residues that define the VBS are themselves 'masked' and are buried in the core of a series of helical bundles that make up the talin rod []. ; PDB: 2L10_A 2KVP_A 2B0H_A 1RKC_B 1XWJ_B.
Probab=84.65 E-value=24 Score=32.36 Aligned_cols=91 Identities=25% Similarity=0.285 Sum_probs=68.7
Q ss_pred HHhcCChHHHHHHHHHhhhhHHHHHHHHhhccC-CCCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChh-HHHHHH
Q psy5464 137 VKNASSQGELLDNIKAFGRNATELMAQAAKHGA-EGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQ-LRDDLA 214 (481)
Q Consensus 137 ~~~~~s~~el~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~-~r~~l~ 214 (481)
.+...+++||...=++|+.+..+|..++.---+ -.+.-.+..+..+++-+|....+|...++..|.+--|+. +|+--.
T Consensus 25 ~ks~~~p~eL~~la~~lt~~y~~La~~~~~aaat~~~~ev~~~i~~~vq~LG~sc~~Lv~aag~~~~~P~d~~~k~~L~~ 104 (125)
T PF08913_consen 25 TKSRTNPEELGTLANDLTHDYSQLAQDAKGAAATTPSAEVQNRIKSAVQDLGMSCIELVQAAGAVQSNPSDPYAKRELAD 104 (125)
T ss_dssp HHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCchhHHHHHHH
Confidence 457789999999999999887777776655333 345556778999999999999999999999999999997 555556
Q ss_pred HHHHHHHHhhHHH
Q psy5464 215 AARAILKKHSTML 227 (481)
Q Consensus 215 aar~~Lkk~~~mL 227 (481)
+||.+-++-+-+|
T Consensus 105 ~AR~v~EkVs~Vl 117 (125)
T PF08913_consen 105 AARAVSEKVSQVL 117 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7787777766554
No 6
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=57.92 E-value=2.7e+02 Score=30.01 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHhhccCCCCccchhhhhhhh
Q psy5464 104 LLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNI 183 (481)
Q Consensus 104 lLs~vtrlLilaD~vdV~~il~~~~~v~~~l~~~~~~~s~~el~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (481)
|..+.+|+.=..|-.++.++-.+.+.+.+.++ +..+++..++...++...++.+ + .++++++|+
T Consensus 232 L~~~ltrL~~~~~~~~v~~l~~~~~~~a~~~~------~~~~ll~~l~~l~~~l~~ll~~---l-------~~~~lL~Nl 295 (370)
T PLN03094 232 LVGICTRLAREMEAIGVAKMYALAERAADLME------EARPLLLKIQAMAEDLQPLLSE---V-------RDSGLLKEV 295 (370)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHHHHHHhh---c-------chhhHHHHH
Confidence 34445555555555566666555555544443 2233555555554444443311 1 116899999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH---HhhHHHHHhhhhhhcCC
Q psy5464 184 KAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILK---KHSTMLLTASKVYVRHP 238 (481)
Q Consensus 184 ~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar~~Lk---k~~~mL~ta~k~~~rhp 238 (481)
..|-.++.+-.....+-...|-+|..-+.|..+...+. ++.-=+.+--.-++.-|
T Consensus 296 e~lt~~LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D~ 353 (370)
T PLN03094 296 EKLTRVAAEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFTGDE 353 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999988888888888888888766666555554444 33333334444455544
No 7
>KOG0994|consensus
Probab=51.96 E-value=5.9e+02 Score=32.08 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHH--HHHHHHhcCCHH
Q psy5464 422 ERIVAECNAVRQALQDLLSDFMETDIPIL--VLIEAARSGNEK 462 (481)
Q Consensus 422 E~Iv~~Cn~lRqaLqdLlsey~~~~~~l~--~l~~aA~~g~~~ 462 (481)
+.++..-|.--+-|+||-.+|.++...|. +..-+..++..+
T Consensus 1699 ~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1699 EKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence 34455555555677888888988887763 334444444333
No 8
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=48.11 E-value=2.8e+02 Score=31.56 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5464 292 PSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEY 340 (481)
Q Consensus 292 ~~Le~~Le~Iis~a~~~aDs~~Tr~~rRerIvaeCn~lRqaLqdLLsey 340 (481)
..|...++.|+++|..||. ..-++.+..|-+.|..+-.+-..|..+.
T Consensus 176 ~~l~~~ie~il~hAlafaN--Val~~DkkAlsa~CQkVl~Ec~af~~~~ 222 (552)
T PF05482_consen 176 KQLRSIIEHILSHALAFAN--VALEEDKKALSALCQKVLRECNAFQEEC 222 (552)
T ss_pred HHHHHHHHHHHHHHHHHHh--hchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466788999999999994 5668888899999988888887776553
No 9
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=43.13 E-value=3.3e+02 Score=28.29 Aligned_cols=112 Identities=20% Similarity=0.267 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhcCccccc--cccccchHHHHHHHhhhhhhhhcccccchhHHHH---HH
Q psy5464 351 EGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYN--ERVRPSLEERLESIISGAALMADSNCTRDDRRER---IV 425 (481)
Q Consensus 351 e~Le~AI~~m~kktrDLRRqLrkAavDhV~~~~dpl~~~--~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~---Iv 425 (481)
+++-+-|..+++....|+-|||--..-|- .+-. +.. .+++..|.+.|+.+-..- --++.+.|- =|.+ .|
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahr--eLQa-s~dEa~~L~~~L~~kl~eLqkk~-~Ea~lAVtP--LKak~AslV 85 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHR--ELQA-SRDEATRLQDELQGKLEELQKKQ-HEANLAVTP--LKAKLASLV 85 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHh-hhHhhccch--HHHHHHHHH
Confidence 55666666666666666666664333331 0000 111 145555555555543221 112322222 1222 35
Q ss_pred HHHH----HHHHHHHHHHHHHhhcchhHHHHHHHHhcCCHHHHHHHHHHH
Q psy5464 426 AECN----AVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENF 471 (481)
Q Consensus 426 ~~Cn----~lRqaLqdLlsey~~~~~~l~~l~~aA~~g~~~~~~e~~~~f 471 (481)
..|. .+.+-||+|.+.|-.+++- ...+-.-=+-.+.+||+.+|
T Consensus 86 ~kc~eRn~Li~~llqel~RHg~~~~lL---se~a~~mv~DvALaEYaAtF 132 (277)
T PF15030_consen 86 QKCRERNRLITHLLQELHRHGPANHLL---SELAQSMVNDVALAEYAATF 132 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 5664 3344556666665544421 12222233457788999998
No 10
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=40.28 E-value=2.7e+02 Score=27.68 Aligned_cols=89 Identities=28% Similarity=0.287 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHhhccCCCCcc
Q psy5464 95 GNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSA 174 (481)
Q Consensus 95 ~~mvraaR~lLs~vtrlLilaD~vdV~~il~~~~~v~~~l~~~~~~~s~~el~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (481)
+.+|.||+.+-.+++.|.=.||-+. ..-.++++|+...+..+
T Consensus 57 EgLisAAkaV~~a~~~Lv~aA~~~~------------------~g~~~~E~LI~aAk~VA-------------------- 98 (200)
T smart00307 57 EGLISAAKAVAAATNVLVEAADGVV------------------TGKGSEEELIVAAKEVA-------------------- 98 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHH--------------------
Confidence 5788899887777766655555432 35678999999999998
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhHHHHHhhhhhhc
Q psy5464 175 TQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVR 236 (481)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar~~Lkk~~~mL~ta~k~~~r 236 (481)
.....|. ++-|-.-=.|+..+++|..|-..+...+.-|.-++|.+..
T Consensus 99 -------------asTaQLV--aAsrvka~~~S~~~~~L~~Ask~V~~At~~LVaaak~~~~ 145 (200)
T smart00307 99 -------------ASTAQLV--AASRVKADKDSQAQDRLQAASKAVTNATANLVAAVKSGMI 145 (200)
T ss_pred -------------HHHHHHH--HHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 2222333345566777777777777777777888887754
No 11
>KOG4368|consensus
Probab=36.81 E-value=5e+02 Score=30.16 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=79.6
Q ss_pred HHHHHHHHhhhhcCCCChhhHHHHHHH-HHH---------HHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHH
Q psy5464 299 ESIISGAALMADSNCTRDDRRERIVAE-CNA---------VRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLR 368 (481)
Q Consensus 299 e~Iis~a~~~aDs~~Tr~~rRerIvae-Cn~---------lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLR 368 (481)
...||.+...-=+.||+|.|+|-|+.. -|. +|..|-=||..|....- .|+.++|-
T Consensus 119 kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcq---------------rk~~~~~~ 183 (757)
T KOG4368|consen 119 KDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQ---------------RKQARELL 183 (757)
T ss_pred HHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHH---------------HHHHHHHH
Confidence 345666666556689999999877653 222 23333333333322111 13556677
Q ss_pred HHHHHHHHhhhhhhcCccccc--cccccchHHHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHHHHH----HHHHHH
Q psy5464 369 RQLRKAVVDHERMVMDPLAYN--ERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQ----DLLSDF 442 (481)
Q Consensus 369 RqLrkAavDhV~~~~dpl~~~--~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn~lRqaLq----dLlsey 442 (481)
.-|.+.||--- | ..+. +...-.+++.|..+-+|..-|+||-+. .-+.--+.|+ .++++|
T Consensus 184 ~~l~~~v~~~y-c----~~~~~~~e~~~~~~~~ll~~we~~~yf~ds~~~----------ql~~~~~~~~~~~~~~~~~y 248 (757)
T KOG4368|consen 184 AALQKVVVPIY-C----TSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQ----------QLQSPALGLGQYQATLINEY 248 (757)
T ss_pred HHHHHHhHHHH-H----hhhhhhHhHHHHHHHHHHHHHhhcCchhHHHHH----------HhhhhhhhhhhHHHHHHhhh
Confidence 77777774432 1 1222 345567888999999999999996432 2222222222 255777
Q ss_pred hhcchhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy5464 443 METDIPILVLIEAARSGNEKEVEKAAENFADHA 475 (481)
Q Consensus 443 ~~~~~~l~~l~~aA~~g~~~~~~e~~~~f~e~~ 475 (481)
-..-.|+..-..+--.|=...-.+|+..-+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~qh~~~~q~~q~q~ 281 (757)
T KOG4368|consen 249 SSVVQPVQLAFQQQIQTLKTQHEEFVQQQQQQM 281 (757)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666644433333343444455554444443
No 12
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=33.69 E-value=2.1e+02 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=40.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHhcCCHHHHHHHHHHHHHHHhHhhh
Q psy5464 415 CTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVE 480 (481)
Q Consensus 415 ~Tr~e~rE~Iv~~Cn~lRqaLqdLlsey~~~~~~l~~l~~aA~~g~~~~~~e~~~~f~e~~~~Lve 480 (481)
.+..+-|++|-...+.++.-++++...+.+. + .+.+.+.++...|.+++++|
T Consensus 22 ~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~------~--------k~~~~~~~~~~~e~~~e~~d 73 (74)
T PF12732_consen 22 KSGKETREKLKDKAEDLKDKAKDLYEEAKEK------V--------KEKAEETADEAKEKAKELKD 73 (74)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999999999887664 1 14555677777888887776
No 13
>KOG3100|consensus
Probab=33.40 E-value=24 Score=34.92 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=35.3
Q ss_pred cCccc-cccccccchHH--HHHHHhhhhhhhhcccccchhHHHHHHHHHH
Q psy5464 383 MDPLA-YNERVRPSLEE--RLESIISGAALMADSNCTRDDRRERIVAECN 429 (481)
Q Consensus 383 ~dpl~-~~~~~r~~Le~--~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn 429 (481)
|||.- |....|..++. ++=.||++.++|-.|-.++-+||..||++|=
T Consensus 140 lDPkrhYkk~dr~~~PKYFQIGtIVe~p~dFYsSRm~kKeRK~Tivdell 189 (206)
T KOG3100|consen 140 LDPKRHYKKNDRKEVPKYFQIGTIVEDPEDFYSSRMPKKERKSTIVDELL 189 (206)
T ss_pred cCHHHHHhhhhhhhcchhheeeeeccCHHHHhhhccchhhHHHHHHHHHH
Confidence 55543 33333444443 4668999999999999999999999999883
No 14
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=32.44 E-value=4.9e+02 Score=27.74 Aligned_cols=53 Identities=13% Similarity=0.352 Sum_probs=37.1
Q ss_pred hhhHHH---HHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHHH
Q psy5464 316 DDRRER---IVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRK 373 (481)
Q Consensus 316 ~~rRer---IvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLrk 373 (481)
++..+- .+.--..+|.++++++.+|..+-+-+.++ -|+.+.+++.+|||++++
T Consensus 252 ~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRs-----ElDe~~krL~ELrR~vr~ 307 (320)
T TIGR01834 252 EENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRS-----ELDEAHQRIQQLRREVKS 307 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 454443 46666779999999999999887655444 355677777777776653
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.41 E-value=5.1e+02 Score=25.68 Aligned_cols=86 Identities=20% Similarity=0.370 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhcCccccccccccc
Q psy5464 316 DDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPS 395 (481)
Q Consensus 316 ~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLrkAavDhV~~~~dpl~~~~~~r~~ 395 (481)
++.+....++-..+..++..| ..|.. .++.-+....+.+.+|.+++.....-.- .+.|.
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L-~~~~~---------~l~~~v~~q~~el~~L~~qi~~~~~~~~-----------~l~p~ 106 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENL-EVYNE---------QLERQVASQEQELASLEQQIEQIEETRQ-----------ELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 345556666666666666665 33432 4666777777777777777744321111 22333
Q ss_pred hHHHHHHHhhhhhhhhcccccchhHHHHH
Q psy5464 396 LEERLESIISGAALMADSNCTRDDRRERI 424 (481)
Q Consensus 396 Le~~Le~ii~g~a~~ADsa~Tr~e~rE~I 424 (481)
+...++.+-.-. -.|.-+..++|.++|
T Consensus 107 m~~m~~~L~~~v--~~d~Pf~~~eR~~Rl 133 (251)
T PF11932_consen 107 MEQMIDELEQFV--ELDLPFLLEERQERL 133 (251)
T ss_pred HHHHHHHHHHHH--hcCCCCChHHHHHHH
Confidence 333333331111 247888888888888
No 16
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=32.25 E-value=1e+02 Score=31.89 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHHH
Q psy5464 320 ERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRK 373 (481)
Q Consensus 320 erIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLrk 373 (481)
-++|..-..+|+..++++.+|.+.-+-+.++ -|+.+.+++-+|||++|.
T Consensus 242 g~~~~a~m~~r~~~~~~~e~~L~~l~lPTr~-----evd~l~k~l~eLrre~r~ 290 (293)
T PF09712_consen 242 GQLVNALMDLRKQQQEVVEEYLRSLNLPTRS-----EVDELYKRLHELRREVRA 290 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 3456667779999999999999887754443 477899999999999985
No 17
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=30.67 E-value=2.4e+02 Score=26.01 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhcCccccccccccchH
Q psy5464 318 RRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLE 397 (481)
Q Consensus 318 rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLrkAavDhV~~~~dpl~~~~~~r~~Le 397 (481)
++++.+.....|+.++++|++-|=+ .-.++.+..++..|.....-|+.+=+++.-+- ...+.+
T Consensus 36 ~~~s~~pcae~I~~aV~~m~~LfP~----~~~~e~vr~~L~~L~~~~~~Lq~eC~~~~~~~-------------~~~~~~ 98 (123)
T PF12205_consen 36 RHDSFAPCAERIRSAVTEMAALFPK----DPRSETVRSSLRQLTSSAYRLQAECQKAQPED-------------DAVDIQ 98 (123)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTS-S----SB--HHHHHHHHHHHHHHHHHHHHHHS---S---------------SS-HH
T ss_pred ccccchhHHHHHHHHHHHHHHhCCC----ccCChHHHHHHHHHHHHHHHHHHHhcccCCCC-------------CchhHH
Confidence 4567889889999999999887732 22457788888888877777755543332221 233566
Q ss_pred HHHHHHhhhhhhhhc
Q psy5464 398 ERLESIISGAALMAD 412 (481)
Q Consensus 398 ~~Le~ii~g~a~~AD 412 (481)
...+.++.+++++|-
T Consensus 99 ~~t~qvi~~AYdIAK 113 (123)
T PF12205_consen 99 LVTQQVIQCAYDIAK 113 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667788888888775
No 18
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.47 E-value=1.8e+02 Score=25.10 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=42.1
Q ss_pred HHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCchHHHHHHHHHHHhHHHHHHHHHHH
Q psy5464 302 ISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKD--PSEGLERAIDHMCRKTRDLRRQLRKAV 375 (481)
Q Consensus 302 is~a~~~aDs~~Tr~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~--~se~Le~AI~~m~kktrDLRRqLrkAa 375 (481)
-..|..+.++ -++|-.....++..+..|.+.|.+..+..- .-...+.++.++.+.+.+|.++|+.+.
T Consensus 13 ~~~A~~~~~~-------~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a 81 (97)
T COG4842 13 RATAKDYAGS-------SGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAA 81 (97)
T ss_pred HHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566654 233444455555777777778877544221 226678888888888888888887544
No 19
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.58 E-value=6.6e+02 Score=25.77 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=53.9
Q ss_pred CccceehhhhhhhhHHhhhhhhhcccC-CCCcccCCcchhhhhHHHHHHHHHHHHHHhhHHHHHHHhHhhcCCCCchhhh
Q psy5464 17 NLEIRTMSVEKTLEPLVLQVTTLVNTK-GPSKKKKGRSKRAHVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRG 95 (481)
Q Consensus 17 ~lEIrtksVE~~LePLv~QVTtLVn~k-~~~~k~~g~s~~a~~~~~aV~~A~enfv~~G~~m~~Aa~~f~~dp~s~~~R~ 95 (481)
++|=++-++....+-+..++..++.+. +...+|+.+..|... -|+.|..++++|-+| ++-..
T Consensus 19 ~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~--------------L~q~M~~~g~elg~~---s~lg~ 81 (248)
T cd07619 19 QVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTT--------------LAQCMVEGAAVLGDD---SLLGK 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHH--------------HHHHHHHHHHhcCCC---chHHH
Confidence 344555566666777777777777653 222234455555333 378888888888432 22333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHH
Q psy5464 96 NMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVED 132 (481)
Q Consensus 96 ~mvraaR~lLs~vtrlLilaD~vdV~~il~~~~~v~~ 132 (481)
.|+..+. ...-+....+-.|+-.-+..+..++.+.+
T Consensus 82 aL~~~ge-a~~kla~a~~~~d~~i~~~fl~PL~~~le 117 (248)
T cd07619 82 MLKLCGE-TEDKLAQELILFELQIERDVVEPLYVLAE 117 (248)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 23444555555566555555555554444
No 20
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.92 E-value=2.4e+02 Score=22.88 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5464 312 NCTRDDRRERIVAECNAVRQALQDLLSEYMA 342 (481)
Q Consensus 312 ~~Tr~~rRerIvaeCn~lRqaLqdLLseym~ 342 (481)
+.+.++-|++|...++.++..++++......
T Consensus 21 P~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 21 PKSGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999998776543
No 21
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=26.42 E-value=4.3e+02 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q psy5464 423 RIVAECNAVRQALQDLLSDFMETDIP 448 (481)
Q Consensus 423 ~Iv~~Cn~lRqaLqdLlsey~~~~~~ 448 (481)
.|+....++|.||..+-.++.+.|+.
T Consensus 37 dIl~Ql~Avr~Al~~~~~~vl~~hl~ 62 (90)
T PRK15039 37 AVLQQIAAIRGAVNGLMREVIKGHLT 62 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999988888777744
No 22
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=25.71 E-value=4.2e+02 Score=27.83 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhhhhcCccccc-ccccc-chHHHHHHHhhhhhhhhcccccchhHHH-HHHHHHHHHHHHHHH
Q psy5464 366 DLRRQLRKAVVDHERMVMDPLAYN-ERVRP-SLEERLESIISGAALMADSNCTRDDRRE-RIVAECNAVRQALQD 437 (481)
Q Consensus 366 DLRRqLrkAavDhV~~~~dpl~~~-~~~r~-~Le~~Le~ii~g~a~~ADsa~Tr~e~rE-~Iv~~Cn~lRqaLqd 437 (481)
||++.+.-|++..+ ++|. .+|.+ ++++.++.++++--.+-|+.--...=|. .|+=+|++.=...=|
T Consensus 99 dl~~Avk~ai~GN~------iDfgv~G~~~~~lee~~~~~~~~~l~i~d~~k~~~~l~~a~VlYl~DNaGEi~FD 167 (285)
T COG1578 99 DLKTAVKLAIVGNV------IDFGVLGFSPFDLEEEVEKLLDAELYIDDSPKLLELLKNASVLYLTDNAGEIVFD 167 (285)
T ss_pred HHHHHHHHHHHhcc------eeeccccCCHhHHHHHHHHhhcCcccccchHHHHHHhccCcEEEEecCCccHHHH
Confidence 58999999999988 4554 24666 8999999998888888886622222222 444444444443333
No 23
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=25.31 E-value=9.3e+02 Score=26.45 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=54.0
Q ss_pred CCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q psy5464 171 GSSATQGELLDNIKAFGRNATELMAQAAKRQMELKD-PQLRDDLAAARAILKKHSTMLLTASKVYV 235 (481)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd-~~~r~~l~aar~~Lkk~~~mL~ta~k~~~ 235 (481)
|...+|.++.+.++.|...+.++...++.=..|+.= +.-|..|.---...|..+-+|..|+.-||
T Consensus 380 ~~~~~~~~fwe~~~~Fiks~i~l~~~iK~~~~~~~l~~dvr~~L~~l~k~tKE~t~lL~~S~~~~~ 445 (445)
T PF10428_consen 380 GGIREQKEFWEDCNSFIKSWISLLAKIKEIMKDLPLPPDVRARLRPLQKATKEVTILLEVSPWSYL 445 (445)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 478899999999999999999999998866666654 47788888888888888888888876553
No 24
>KOG0905|consensus
Probab=25.18 E-value=1.9e+02 Score=36.03 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhccCC-CCCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhcCccc-cccccccchHHHHHHHhhh
Q psy5464 329 VRQALQDLLSEYMANMSI-KDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLA-YNERVRPSLEERLESIISG 406 (481)
Q Consensus 329 lRqaLqdLLseym~n~g~-k~~se~Le~AI~~m~kktrDLRRqLrkAavDhV~~~~dpl~-~~~~~r~~Le~~Le~ii~g 406 (481)
.|+.|..|+..|...-.. -...-.+-++++++.+..+-++.-|.......+---+.-++ .+.+..|+
T Consensus 506 sr~~l~~li~ty~~~v~a~l~~~~~~~~s~~~Viq~Vk~ICs~L~~Vet~~It~~v~~l~~~~qrk~~~----------- 574 (1639)
T KOG0905|consen 506 SRHCLASLIDTYENEVDAALGSTGKLSSSVDRVIQAVKKICSALGGVETEEITNAVNKLKLIPQRKAPN----------- 574 (1639)
T ss_pred hHhHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHhhhhhhhcCCC-----------
Confidence 578889999999664321 11223455677788877777777776544444300011010 01111111
Q ss_pred hhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy5464 407 AALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETD 446 (481)
Q Consensus 407 ~a~~ADsa~Tr~e~rE~Iv~~Cn~lRqaLqdLlsey~~~~ 446 (481)
.-.|++.+.+--+|+|-..||.++-|..+||.-|-+..
T Consensus 575 --i~sd~s~~~~Rg~enie~~~~el~~aI~~lleLYcn~f 612 (1639)
T KOG0905|consen 575 --ITSDDSLVSHRGLENIEKVNNELTAAIYDLLELYCNSF 612 (1639)
T ss_pred --cccchhHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 22367766666669999999999999999999997543
No 25
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.17 E-value=9.1e+02 Score=26.23 Aligned_cols=75 Identities=8% Similarity=0.027 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhhcCccccccccccchHHHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHH
Q psy5464 354 ERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQ 433 (481)
Q Consensus 354 e~AI~~m~kktrDLRRqLrkAavDhV~~~~dpl~~~~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn~lRq 433 (481)
...+....+++..|.+.|..++-..+ .....--..+.+.|+. .++.-..+.+++++-..-+.+.+
T Consensus 299 ~~~L~~~~qrLd~L~~RL~~a~~~~L-------~~k~~rL~~L~~rL~a--------LSPl~~~~~~~~~l~~~~~~l~~ 363 (432)
T TIGR00237 299 QNKLALQQLQFEKLEKRKQAALNKQL-------ERTRQKKTRLTKRLTQ--------TNPSPQILRAQTRTEQLNRRLNA 363 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777665554 0000000112223332 34444455667777777777777
Q ss_pred HHHHHHHHHh
Q psy5464 434 ALQDLLSDFM 443 (481)
Q Consensus 434 aLqdLlsey~ 443 (481)
+++..+....
T Consensus 364 ~~~~~l~~~~ 373 (432)
T TIGR00237 364 LKNAQANLKL 373 (432)
T ss_pred HHHHHHHHHH
Confidence 7777665544
No 26
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=24.03 E-value=2.1e+02 Score=24.31 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.2
Q ss_pred hHHHHHHHHhhccCCCCc
Q psy5464 156 NATELMAQAAKHGAEGSS 173 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~ 173 (481)
-..|+++||++||..+..
T Consensus 35 av~E~~~Nav~H~~~~~~ 52 (125)
T PF13581_consen 35 AVSEALTNAVEHGYPGDP 52 (125)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 356999999999998765
No 27
>KOG3100|consensus
Probab=23.43 E-value=61 Score=32.17 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhhccCcccccc-cccccHHHH--HHHHHHHHHhhhhcCCCChhhHHHHHHHHH
Q psy5464 265 KKRSVSLLHQVYERMVMDPLAYNE-RVRPSLEER--LESIISGAALMADSNCTRDDRRERIVAECN 327 (481)
Q Consensus 265 ~~~~~~~l~~~~~~~~~dp~~~~~-~~r~~Le~~--Le~Iis~a~~~aDs~~Tr~~rRerIvaeCn 327 (481)
..++..-|.-++.|-.|||....- ..|..+++. +-.||++.++|=.|-.++-+|+.-||++|=
T Consensus 124 T~e~KrDLqlLKmRaalDPkrhYkk~dr~~~PKYFQIGtIVe~p~dFYsSRm~kKeRK~Tivdell 189 (206)
T KOG3100|consen 124 TMELKRDLQLLKMRAALDPKRHYKKNDRKEVPKYFQIGTIVEDPEDFYSSRMPKKERKSTIVDELL 189 (206)
T ss_pred CHHHHHHHHHHHHHhccCHHHHHhhhhhhhcchhheeeeeccCHHHHhhhccchhhHHHHHHHHHH
Confidence 345777888889999999986444 556666664 468999999999999999999999999884
No 28
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=23.16 E-value=3e+02 Score=26.56 Aligned_cols=81 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhcCccccccccccc
Q psy5464 316 DDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPS 395 (481)
Q Consensus 316 ~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLrkAavDhV~~~~dpl~~~~~~r~~ 395 (481)
|+.||+|+..|..+-..-...+. .--+-..+.-+..+..+..+++.++..+...+ -+ ...+...|.+.|.+.
T Consensus 1 ~d~RE~iik~sRdi~~~Sk~~I~-----~lhr~~~~~~~~~l~~a~~~l~~l~~~~~~l~--~~-~~~~~~~y~~~~s~~ 72 (200)
T PF01997_consen 1 HDRRERIIKLSRDITRLSKKIIF-----ALHRIDQEKAEKILEEAEEKLKELKKLLKQLA--EL-PGHPFYRYHGAYSPG 72 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HCCTCTTHHHHHHHHHHHHHHHHHHCHSHHHH--HC-TTCGHHHHGGGTHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-----HHHhccccchHHHHHHHHHHHHHHHHHHhhhc--cc-CCCcHHHHHHHHHHH
Q ss_pred hHHHHHHHh
Q psy5464 396 LEERLESII 404 (481)
Q Consensus 396 Le~~Le~ii 404 (481)
+++-.|++.
T Consensus 73 lQE~vEa~~ 81 (200)
T PF01997_consen 73 LQEYVEAIS 81 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 29
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=22.69 E-value=6.1e+02 Score=25.95 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy5464 208 QLRDDLAAARAILKK 222 (481)
Q Consensus 208 ~~r~~l~aar~~Lkk 222 (481)
.+-|-+..|+.-|||
T Consensus 125 ~k~~sleK~qseLKK 139 (232)
T cd07646 125 SKGESLEKCQAELKK 139 (232)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355677888888887
No 30
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.60 E-value=9.7e+02 Score=25.66 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhhcCccccccccccchHHHHHHHhhhhhhhhcccccchhHHHHHHHHHHHHHH
Q psy5464 354 ERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQ 433 (481)
Q Consensus 354 e~AI~~m~kktrDLRRqLrkAavDhV~~~~dpl~~~~~~r~~Le~~Le~ii~g~a~~ADsa~Tr~e~rE~Iv~~Cn~lRq 433 (481)
..-+....+.+..|.++|..++-..+ .....--..+...|+. -++..+...+++++-.+=+.+.+
T Consensus 304 ~~~l~~~~q~L~~l~~rL~~a~~~~L-------~~~~~~L~~l~~rL~~--------lsP~~~L~r~~qrL~~L~~rL~~ 368 (438)
T PRK00286 304 ERLLAQQQQRLDRLQQRLQRALERRL-------RLAKQRLERLSQRLQQ--------QNPQRRIERAQQRLEQLEQRLRR 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh--------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777776655444 0000000111222222 45555666778888888888888
Q ss_pred HHHHHHHHHh
Q psy5464 434 ALQDLLSDFM 443 (481)
Q Consensus 434 aLqdLlsey~ 443 (481)
+++..+..+.
T Consensus 369 a~~~~L~~~~ 378 (438)
T PRK00286 369 AMRRQLKRKR 378 (438)
T ss_pred HHHHHHHHHH
Confidence 8888886655
No 31
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=20.80 E-value=8.2e+02 Score=24.16 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=38.7
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh--hcchhH---------HHHHHHHhcCCHHHHHHHHHHHHHHHhHh
Q psy5464 410 MADSNCTRDDRRERIVAECNAVRQALQDLLSDFM--ETDIPI---------LVLIEAARSGNEKEVEKAAENFADHANKL 478 (481)
Q Consensus 410 ~ADsa~Tr~e~rE~Iv~~Cn~lRqaLqdLlsey~--~~~~~l---------~~l~~aA~~g~~~~~~e~~~~f~e~~~~L 478 (481)
|..-.||.| |.=+...++-.|+.|..++..+- +.+-+| .-+-++.-.++ ...+++....++-.++|
T Consensus 104 F~eV~fTfD--~~~L~~~L~ec~~~L~~lv~~HLT~KS~~Ri~~vF~~f~~~efL~~lf~~~-~~~~~~L~~i~~~Lnkl 180 (186)
T PF05527_consen 104 FYEVDFTFD--RNYLSKLLKECRDLLHQLVEPHLTPKSHGRIDHVFNFFSDPEFLDALFSPD-EEYRDHLGKICDGLNKL 180 (186)
T ss_dssp HTSTTS-----HHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHT-HHHHHHHTSG---GGHHHHHHHHHHHHHH
T ss_pred hcccchhhh--HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHhhCChHHHHHHhCcc-cchHHHHHHHHHHHHHH
Confidence 455666665 44555555555666666664333 223333 22233444444 55899999999999999
Q ss_pred hhC
Q psy5464 479 VEE 481 (481)
Q Consensus 479 ve~ 481 (481)
+|+
T Consensus 181 ld~ 183 (186)
T PF05527_consen 181 LDE 183 (186)
T ss_dssp HHT
T ss_pred HhC
Confidence 986
No 32
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=4.8e+02 Score=23.34 Aligned_cols=80 Identities=28% Similarity=0.361 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHhhhhHHHHHHHHhhccCCCCccchhhhhhhhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy5464 141 SSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAIL 220 (481)
Q Consensus 141 ~s~~el~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Rq~dLkd~~~r~~l~aar~~L 220 (481)
...+||.+.+++|+|--+.|. .++.- +.--..|.---|||+.|..|..+|.-=
T Consensus 7 Ep~eeLs~kirdf~Ra~~SLi--------------------------EEiEA-~~wY~qR~~~tKD~~~r~ImehnrdeE 59 (103)
T COG3461 7 EPPEELSEKIRDFSRARQSLI--------------------------EEIEA-MMWYDQRADATKDEDLRAIMEHNRDEE 59 (103)
T ss_pred CCHHHHHHHHHHHHHHHHHHH--------------------------HHHHH-HHHHHHHhhccccHhHHHHHHHcccHH
Confidence 356788888899984443332 22222 223457888899999999999999999
Q ss_pred HHhhHHHHHhhhhhhcC-CCcHHHHHHHHhhHh
Q psy5464 221 KKHSTMLLTASKVYVRH-PELAAAKENRNFVLG 252 (481)
Q Consensus 221 kk~~~mL~ta~k~~~rh-p~~~~a~~nR~~v~~ 252 (481)
++|..|||-=. .|| |.-. ++=+.++|.
T Consensus 60 ~eHa~mlLEwl---rR~~p~wd--~eL~eiLft 87 (103)
T COG3461 60 KEHAAMLLEWL---RRHDPAWD--AELHEILFT 87 (103)
T ss_pred HHHHHHHHHHH---HHcCchHH--HHHHHHHhc
Confidence 99999998532 244 4433 344555554
No 33
>PRK10132 hypothetical protein; Provisional
Probab=20.30 E-value=6.3e+02 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHH
Q psy5464 317 DRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQL 371 (481)
Q Consensus 317 ~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqL 371 (481)
.++++|.+....+-..+.+|+..+-.. ..++++.+=.++...+++.|..|
T Consensus 12 ~q~e~L~~Dl~~L~~~le~ll~~~~~~-----~~~~~~~lR~r~~~~L~~ar~~l 61 (108)
T PRK10132 12 DGVQDIQNDVNQLADSLESVLKSWGSD-----AKGEAEAARRKAQALLKETRARM 61 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888888888888888888765432 22344544455555555554444
No 34
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=20.25 E-value=5.5e+02 Score=21.93 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHhHHHHHHHHHHH
Q psy5464 316 DDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAV 375 (481)
Q Consensus 316 ~~rRerIvaeCn~lRqaLqdLLseym~n~g~k~~se~Le~AI~~m~kktrDLRRqLrkAa 375 (481)
++...+....++.++... .|+++.+.+..+.+...+=...|..+...++.+|+.+.+-+
T Consensus 3 ~e~~~k~~~~l~~v~~~~-~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li 61 (100)
T PF03127_consen 3 PEQVSKRRSELEKVKNNA-KLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLI 61 (100)
T ss_dssp HCTHHHHHHHHHHHHHHH-HHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777776544 66666666544333332221366677777777777775533
No 35
>PF09141 Talin_middle: Talin, middle domain; InterPro: IPR015224 This domain adopts a structure consisting of five alpha helices that fold into a bundle. It contains a Vinculin binding site (VBS) composed of a hydrophobic surface spanning five turns of helix four. Activation of the VBS causes subsequent recruitment of Vinculin, which enables maturation of small integrin/talin complexes into more stable adhesions. Formation of the complex between VBS and Vinculin requires prior unfolding of this middle domain: once released from the talin hydrophobic core, the VBS helix is then available to induce the 'bundle conversion' conformational change within the vinculin head domain thereby displacing the intramolecular interaction with the vinculin tail, allowing vinculin to bind actin []. ; GO: 0005200 structural constituent of cytoskeleton, 0007016 cytoskeletal anchoring at plasma membrane, 0001726 ruffle, 0005925 focal adhesion; PDB: 1SJ8_A 1T01_B 1SJ7_A 1SYQ_B.
Probab=20.08 E-value=3.3e+02 Score=26.31 Aligned_cols=51 Identities=27% Similarity=0.340 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHhHhhcCCCCchhhhhHHHHHHHHHHHHHHHH
Q psy5464 58 VLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLL 112 (481)
Q Consensus 58 ~~~~aV~~A~enfv~~G~~m~~Aa~~f~~dp~s~~~R~~mvraaR~lLs~vtrlL 112 (481)
.+++||---..|+-+..+.+..-+.- .+|+. ++++++.|+|.|..+++.||
T Consensus 82 avgaAittIssnl~em~k~vr~laaL-~d~~~---~~~~Ll~Aar~L~~A~sdll 132 (161)
T PF09141_consen 82 AVGAAITTISSNLPEMAKGVRMLAAL-MDDEG---DGDKLLDAARKLCGAFSDLL 132 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTT-----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh-cCCcc---cHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555433322222 34444 78899999999999887765
Done!