RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5464
(481 letters)
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal
protein, protein-Pro interactions, cell adhesion,
cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A
1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A
3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A
1t01_A
Length = 258
Score = 161 bits (409), Expect = 1e-46
Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 65/266 (24%)
Query: 19 EIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERG---- 74
T ++E LEP+ Q++ LV + VAAV+ A N + G
Sbjct: 3 VFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETV 62
Query: 75 -----------------------DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRL 111
+ AA+ DP S R ++ +R +LS + L
Sbjct: 63 QTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDL 122
Query: 112 LILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEG 171
L+ D +V +++ + + + L + +
Sbjct: 123 LLTFDEAEVRKIIRVCKGILEYLTVAEVVET----------------------------- 153
Query: 172 SSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTAS 231
+L+ K G T++ +RQ EL + R L + +K+ +L++A
Sbjct: 154 ----MEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAM 209
Query: 232 KVYV-----RHPELAAAKENRNFVLG 252
K++V ++ + A +NRNF +
Sbjct: 210 KIFVTTKNSKNQGIEEALKNRNFTVE 235
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus
musculus} SCOP: a.24.9.1 PDB: 1dov_A
Length = 205
Score = 131 bits (331), Expect = 4e-36
Identities = 96/223 (43%), Positives = 122/223 (54%), Gaps = 58/223 (26%)
Query: 55 RAHVLVAAVEKATENFIERG-------------------------DAMSLAAREFADDPC 89
+AHVL A+VE+ATENF+E+G D M AA EFADDPC
Sbjct: 1 KAHVLAASVEQATENFLEKGDKIAKESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPC 60
Query: 90 SSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDN 149
SS+KRGNMVRAAR LLSAVTRLLILADM DV+ LL L+VVED + K++NA +
Sbjct: 61 SSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGN------- 113
Query: 150 IKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQL 209
+ +L KA +L AAKRQ ELKD
Sbjct: 114 --------------------------EQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGN 147
Query: 210 RDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVLG 252
RD +AAAR IL+K+ +L TAS+ ++HP++AA K NR+ +
Sbjct: 148 RDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYK 190
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site,
vinculin binding helix bundle, cell adhesion; 2.66A
{Homo sapiens}
Length = 111
Score = 122 bits (308), Expect = 6e-34
Identities = 73/101 (72%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 272 LHQVYERMVMDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVR 330
L+ +++++DPL+++E R RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVR
Sbjct: 11 LNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVR 70
Query: 331 QALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQL 371
QALQDLLSEYM N K+ S+ L AID M +KTRDLRRQL
Sbjct: 71 QALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQL 111
Score = 82.0 bits (202), Expect = 3e-19
Identities = 53/69 (76%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Query: 378 HERMVMDPLAYNE-RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQ 436
+++++DPL+++E R RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQ
Sbjct: 15 DKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQ 74
Query: 437 DLLSDFMET 445
DLLS++M
Sbjct: 75 DLLSEYMGN 83
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo
sapiens} PDB: 1st6_A
Length = 1066
Score = 121 bits (303), Expect = 2e-29
Identities = 71/509 (13%), Positives = 153/509 (30%), Gaps = 89/509 (17%)
Query: 20 IRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERG----- 74
T ++E LEP+ Q++ LV + VAAV+ A N + G
Sbjct: 4 FHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQ 63
Query: 75 ----------------------DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLL 112
+ AA+ DP S R ++ +R +LS + LL
Sbjct: 64 TTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLL 123
Query: 113 ILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGS 172
+ D +V +++ + + + L + +
Sbjct: 124 LTFDEAEVRKIIRVCKGILEYLTVAEVVET------------------------------ 153
Query: 173 SATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASK 232
+L+ K G T++ +RQ EL + R L + +K+ +L++A K
Sbjct: 154 ---MEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMK 210
Query: 233 VYV-----RHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSV---------------SLL 272
++V ++ + A +NRNF + + + + + L
Sbjct: 211 IFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASKDTEAMKRAL 270
Query: 273 HQVYERMVMDPLAYNE---RVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAV 329
+ ++ + + E+ + I+ A + + R I+ C +
Sbjct: 271 ASIDSKLNQAKGWLRDPSASPGDAGEQAIRQILDEAGKVGEL--CAGKERREILGTCKML 328
Query: 330 RQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYN 389
Q + S + + + L ++ A E M +
Sbjct: 329 GQMTDQVADLRARGQ---GSSPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSIA 385
Query: 390 ERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPI 449
+++ + + + R+ + + R + L + +
Sbjct: 386 KKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAELCDDPKERDDILRSLGE-ISALTSK 444
Query: 450 LVLIEAARSGNEKEVEKAAENFADHANKL 478
L + G+ E A+ A L
Sbjct: 445 LADLRRQGKGDSPEARALAKQVATALQNL 473
Score = 44.1 bits (102), Expect = 9e-05
Identities = 36/338 (10%), Positives = 93/338 (27%), Gaps = 32/338 (9%)
Query: 49 KKGRSKRAHVLVAAVEKATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAV 108
K + A E+A ++ + + C+ +R ++ + L
Sbjct: 281 KGWLRDPSASPGDAGEQAIRQILDEAGKV--------GELCAGKERREILGTCKMLGQMT 332
Query: 109 TRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHG 168
++ L + + + + ++A + + +
Sbjct: 333 DQVADLRARGQGSSPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSIAKKIDAAQ 392
Query: 169 AEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLL 228
+ G +A+A K DP+ RDD+ + + L
Sbjct: 393 NWLADPNGGP------EGEEQIRGALAEARKIAELCDDPKERDDILRSLGEISA-----L 441
Query: 229 TASKVYVRHPELAAAKENRNFVLGTTGFFTLAVTSLKKRSVSLLHQVYERMVMDPLAYNE 288
T+ +R + E R T + + + + +
Sbjct: 442 TSKLADLRRQGKGDSPEARALAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQ 501
Query: 289 RV--------RPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEY 340
R R + + +++ +A+ R+ ++A+C+ V Q L
Sbjct: 502 RWIDNPTVDDRGVGQAAIRGLVAEGHRLANV--MMGPYRQDLLAKCDRVDQLTAQLADLA 559
Query: 341 MANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDH 378
+ +DL+ ++++A+
Sbjct: 560 ARGEGES---PQARALASQLQDSLKDLKARMQEAMTQE 594
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus
musculus}
Length = 59
Score = 88.3 bits (218), Expect = 4e-22
Identities = 51/54 (94%), Positives = 52/54 (96%)
Query: 290 VRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMAN 343
RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQDLLSEYM N
Sbjct: 4 QRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGN 57
Score = 84.1 bits (207), Expect = 2e-20
Identities = 48/52 (92%), Positives = 51/52 (98%)
Query: 392 VRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFM 443
RPSLEERLESIISGAALMADS+CTRDDRRERIVAECNAVRQALQDLLS++M
Sbjct: 4 QRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYM 55
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus
musculus}
Length = 40
Score = 67.1 bits (163), Expect = 1e-14
Identities = 32/39 (82%), Positives = 34/39 (87%)
Query: 306 ALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANM 344
+ DS+CTRDDRRERIVAECNAVRQALQDLLSEYM N
Sbjct: 1 GGIQDSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNA 39
Score = 62.1 bits (150), Expect = 6e-13
Identities = 29/36 (80%), Positives = 33/36 (91%)
Query: 408 ALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFM 443
+ DS+CTRDDRRERIVAECNAVRQALQDLLS++M
Sbjct: 1 GGIQDSSCTRDDRRERIVAECNAVRQALQDLLSEYM 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 7e-14
Identities = 73/461 (15%), Positives = 131/461 (28%), Gaps = 127/461 (27%)
Query: 95 GNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRVV----E-DDLEKVKNASSQGE-LLD 148
G +++LS V + + D + + + E D + K+A S L
Sbjct: 12 GEHQYQYKDILS-VFEDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 149 NIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQ 208
+ + + E+L N LM+ E + P
Sbjct: 70 TLLSKQEEMVQKFV--------------EEVLR------INYKFLMSPIKT---EQRQPS 106
Query: 209 LRDDL-AAARAILKKHSTMLLTASKVYVRHPE--------LAAAKENRNFVL-GTTGF-- 256
+ + R L + + +K V + L + +N ++ G G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 257 FTLAVTSLKKRSVSLLH--QVY---------ERMVMDPLAYNERVRPSLEERLESIISGA 305
+A+ V +++ V++ L ++L I
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-----------QKLLYQI--- 209
Query: 306 ALMADSN-CTRDDRRERIVAECNAVRQALQDLLSEYMANMS------IKDPSEGLERAID 358
D N +R D I ++++ L+ LL +++ A +
Sbjct: 210 ----DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAFN 263
Query: 359 HMCR---KTRD--LRRQLRKAVVDHERMVMDPLAYNER-----------VRPS-L-EE-- 398
C+ TR + L A H + + RP L E
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 399 ----RLESIISGAALMADSNCTRD-------DRRERIVAEC------NAVRQALQDLLSD 441
R SII A + D T D D+ I+ R+ LS
Sbjct: 324 TTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSV 380
Query: 442 FME-TDIPILVLIEAARSGNEKEVEKAAENFADHANKLVEE 481
F IP ++L + +V H LVE+
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSLVEK 419
Score = 54.5 bits (130), Expect = 5e-08
Identities = 83/558 (14%), Positives = 162/558 (29%), Gaps = 170/558 (30%)
Query: 3 VDHFGPIAVK-WDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGR-------SK 54
+ F V +D K+++ S+ E + ++ + SK
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDHIIMS--KDAVSGTLRLFWTLLSK 74
Query: 55 RAHVLVAAVEKATE---NFI-----ERGDAMSLAAREFAD--DPCSSLKRGNMVRAARNL 104
+ ++ VE+ F+ S+ R + + D L N V A N
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYN- 130
Query: 105 LSAVTRLLILADMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQA 164
V+RL + + L LR ++ L+D + G+ T +
Sbjct: 131 ---VSRL---QPYLKLRQALLELR------------PAKNVLIDGVLGSGK--TWVALDV 170
Query: 165 AK-HGAE------------GSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDP--QL 209
+ + + + +L+ ++ + +K +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 210 RDDLAAARAIL--KKHSTMLLTASKVY--VRHPELAAAKENRNF-----VLGTTGFFTLA 260
+ +L R +L K + LL V V++ + A F +L TT F +
Sbjct: 231 QAEL---RRLLKSKPYENCLL----VLLNVQNAKAWNA-----FNLSCKILLTTRFKQVT 278
Query: 261 --VTSLKKRSVSLLHQV---YERMVMDPLAYNERVRPS-L-EE------RLESIISGAAL 307
+++ +SL H V L RP L E R SII A
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AES 336
Query: 308 MADSNCTRD-------DRRERIVAEC------NAVRQALQDL-------------LSEYM 341
+ D T D D+ I+ R+ L LS
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 342 ANMSIKDPSEGLERAIDHMCRK-----------------------TRDLRRQLRKAVVDH 378
++ D ++ + + + L +++VDH
Sbjct: 397 FDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 379 ERMVMDPLAY--NERVRPSLEERLESIIS---GAALMAD-----SNCTRDDR--RERIVA 426
+ P + ++ + P L++ S I + D R ++I
Sbjct: 453 YNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 427 ECNA--VRQALQDLLSDF 442
+ A ++ + L
Sbjct: 510 DSTAWNASGSILNTLQQL 527
Score = 42.9 bits (100), Expect = 2e-04
Identities = 54/396 (13%), Positives = 99/396 (25%), Gaps = 138/396 (34%)
Query: 13 WDPKNLEIRTMSVE-KTLEPLVLQVTT----LVNTKGPSKKKKGRSKRAHVLVAAVEKAT 67
+ K ++ K L +TT + + + H +
Sbjct: 254 QNAK--AWNAFNLSCKIL------LTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEV 303
Query: 68 ENF------IERGD-----------AMSLAAREFADDPC-------SSLKRGNMVRAA-- 101
++ D +S+ A D + + + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 102 RNLLSAVTR-----LLILADMVDVHL---LLKSL------RVVEDDLEKVKNASSQGELL 147
L A R L + H+ LL + V + K+ S L+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPP--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS----LV 417
Query: 148 DNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDP 207
+ K E + + L+ K ++E +
Sbjct: 418 E-----------------KQPKESTISIPSIYLE----------------LKVKLE-NEY 443
Query: 208 QLRDDLAAARAILKKHSTMLLTASKV--YV-----RHPELAAAKENRNFVLGTTGFFTLA 260
L + I K + L + Y H L + L F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFR 501
Query: 261 VTSLKKR-----------SVSLLHQV-------------YERMVMDPLAYNERVRPSLEE 296
K R ++ L Q+ YER+V L + ++ +L
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 297 RLESIISGAALMADSNCTRDDRRERIVAECNAVRQA 332
+ + ALMA+ E I E A +Q
Sbjct: 562 SKYTDLLRIALMAED--------EAIFEE--AHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.8 bits (173), Expect = 6e-13
Identities = 93/557 (16%), Positives = 168/557 (30%), Gaps = 186/557 (33%)
Query: 16 KNLEIRTMSVEKTLEP-----LVLQ----VTTLVNTKGPSKKKKGRSKRAHVLVAAVEKA 66
K L T EP LV + V++LV + VL + +
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE-------PSKVGQFDQVLNLCLTEF 91
Query: 67 TENFIERGDAMSLAAREFADDPCSSLKRGNMVRA---ARNLL---------SAVTRLLIL 114
++E D +LAA+ ++ + +K +++ AR + SA
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA------- 144
Query: 115 ADMVDVHLLLKSLRVVEDDLEKVKNASS------QG-------ELLD-------NIKAFG 154
L ++ V + NA QG EL D +
Sbjct: 145 --------LFRA---VGE-----GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 155 RNATELMAQAAKHGAEGSSA-TQGELLDNIKAFGRNA-----TELMA------------Q 196
+ + E +++ + + TQG L+ I + N + + Q
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQG--LN-ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 197 AAK-----RQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKENRNFVL 251
A + + +LR L A HS L+TA + A +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATG----HSQGLVTAVAI-------AETDSWES--- 291
Query: 252 GTTGFFTLAVTSLK------KRSVSLLHQVYERMVMDPLAYNERVRPSLEERLESIISGA 305
FF ++ R ++ Y + P LE+ LE+
Sbjct: 292 ----FFVSVRKAITVLFFIGVRC----YEAYPNTSLPPSI--------LEDSLENNEGVP 335
Query: 306 ALM-ADSNCTRDDRRERIVAECNAVRQALQDLLSEYMA------NMSIKDPSEGLERAID 358
+ M + SN T++ + V + N+ A + + ++ N+ + P + L ++
Sbjct: 336 SPMLSISNLTQEQ-VQDYVNKTNSHLPAGKQV---EISLVNGAKNLVVSGPPQSL-YGLN 390
Query: 359 HMCRK---------TRDLRRQLRKAVVDHERMVMDPLA------YNERVRPSLEERLESI 403
RK +R + RK + P+A + + L
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSE-RKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 404 ---ISGAALMADSNCTRD--DRR-------ERIVAECNAVRQALQDLLSDFMETDI---- 447
+ + T D D R ERIV +C + + F T I
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-DCIIRLPVKWETTTQFKATHILDFG 505
Query: 448 P-----ILVLIEAARSG 459
P + VL + G
Sbjct: 506 PGGASGLGVLTHRNKDG 522
Score = 50.0 bits (119), Expect = 1e-06
Identities = 64/458 (13%), Positives = 144/458 (31%), Gaps = 144/458 (31%)
Query: 75 DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHL---LLKSLRVVE 131
DA S R +L G++ ++L T +A L K L
Sbjct: 2 DAYST--RPL------TLSHGSL----EHVLLVPTASFFIAS----QLQEQFNKILPEPT 45
Query: 132 DDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDN-IKAFGRN- 189
+ ++ EL+ + + + ++L+ + F
Sbjct: 46 EGFAADDEPTTPAELV----------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 190 ---------ATELMAQAAKRQMELKDPQLRDDLAAA----RAILKKHSTMLLTASKVYVR 236
A +L+ + ++ K+ +++ + A R KK ++ L A
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRA------ 148
Query: 237 HPELAAAKENRNFVL----GTT-GFFT-LAVTSLKKRSVSLLHQVYERMVMDPLAYNERV 290
+ + G T +F L R L+Q Y +V D + +
Sbjct: 149 ----VGEGNAQLVAIFGGQGNTDDYFEEL-------RD---LYQTYHVLVGDLI---KFS 191
Query: 291 RPSLEERLESIISGAALMADSNCTR--DDRRERIVAECNAVRQALQDLLS----EYMANM 344
+L E + + + A+ T+ + + + L++ + +Y+ ++
Sbjct: 192 AETLSELIRTTLD-----AEKVFTQGLN------------ILEWLENPSNTPDKDYLLSI 234
Query: 345 SIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESII 404
I P G+ QL VV + + P ++ + ++
Sbjct: 235 PISCPLIGVI---------------QLAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLV 278
Query: 405 SGAALMADSNCTRDDRRERIVAECNAVRQALQDLLS-------DFMETDIPILVLIEAAR 457
+ A +A+++ + + +VR+A+ L + T +P +L ++
Sbjct: 279 T-AVAIAETD-SWESFFV-------SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 458 SG-------------NEKEVEKAAENFADH--ANKLVE 480
+ +++V+ H A K VE
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Score = 37.7 bits (87), Expect = 0.009
Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 83/218 (38%)
Query: 5 HFGPIAVKWDPKNLEIR----TMSVEKTLE---------PLVLQVTTLVNTKGPSKKKKG 51
HFG K IR M E ++ + + +T + KG
Sbjct: 1675 HFGG------EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE----KG 1724
Query: 52 RSKRAHVLVAAVEKATEN-----FIERGDAMSLAAREFADDPCSSLK-RGNMVR------ 99
+L AT+ M AA F D LK +G +
Sbjct: 1725 ------LL-----SATQFTQPALT-----LMEKAA--FED-----LKSKGLIPADATFAG 1761
Query: 100 ------AARNLLSAVTRLLILADMVDVHLLLKSLR--VVEDDLEKVKNASSQGELLDNIK 151
AA L+++ ++ + +V+ ++ R ++ + + + S ++
Sbjct: 1762 HSLGEYAA---LASLADVMSIESLVE---VVF-YRGMTMQVAVPRDELGRSNYGMI---- 1810
Query: 152 AF--GRNATELMAQAAKHGAEGSSATQGELL----DNI 183
A GR A +A ++ E G L+ N+
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Score = 33.1 bits (75), Expect = 0.28
Identities = 56/376 (14%), Positives = 108/376 (28%), Gaps = 158/376 (42%)
Query: 143 QG--------ELLDNIKAFGRNATELMAQAAKHGAE--GSSATQGELLDNIKAFGRNATE 192
QG +L KA A ++ +A H + G S +LD + N
Sbjct: 1624 QGSQEQGMGMDLYKTSKA----AQDVWNRADNHFKDTYGFS-----ILDIVI---NNPVN 1671
Query: 193 LM----AQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYV-RHPELAAAKENR 247
L + KR E + + + + +K + S Y R +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-----G-- 1724
Query: 248 NFVLGTTGFFT----LAVTSLKKRSVSLLHQVYERMVMDPLAY----NERVRPSLEERLE 299
+L T F T + + + + ++ A SL
Sbjct: 1725 --LLSATQF-TQPALTLM------EKAAFEDLKSKGLIPADATFAGH------SL----- 1764
Query: 300 SIISG--AALMADSNCTRDDRRERIVAEC----NAVR------QALQDLL-------SEY 340
G AAL + +A+ + V +Q + S Y
Sbjct: 1765 ----GEYAALAS-------------LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 341 -MA-----NMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLA-YNERVR 393
M ++ E L+ ++ + ++T +V E + YN
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGW--------LV--E------IVNYN---- 1847
Query: 394 PSLEERLES---IISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPIL 450
+E+ + +G + A+ + ++L+ I I+
Sbjct: 1848 ------VENQQYVAAG--------------------DLRAL-DTVTNVLNFIKLQKIDII 1880
Query: 451 VLIEAARSGNEKEVEK 466
L + S + +EVE
Sbjct: 1881 ELQK---SLSLEEVEG 1893
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo
sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Length = 256
Score = 44.4 bits (104), Expect = 3e-05
Identities = 30/54 (55%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Query: 428 CNAVRQALQDLLSD-FMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVE 480
+R+A+ D +SD F+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+E
Sbjct: 3 RRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIE 56
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein;
NMR {Mus musculus} SCOP: a.216.1.1
Length = 139
Score = 31.7 bits (71), Expect = 0.19
Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 13/131 (9%)
Query: 309 ADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLR 368
+ + A AV QAL +LL A+ + P+ ++A D + T ++
Sbjct: 4 MQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIF 63
Query: 369 RQLRKAVVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAEC 428
+ A MV R L + +++ A+ + + ++++
Sbjct: 64 SSMGDA----GEMV--------RQARILAQATSDLVNAIKADAE-GESDLENSRKLLSAA 110
Query: 429 NAVRQALQDLL 439
+ A ++
Sbjct: 111 KILADATAKMV 121
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 31.8 bits (73), Expect = 0.49
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 18/97 (18%)
Query: 105 LSAVTRLLILADMVDVHLLLKSLRVVEDD--LEKVKNASSQG-----ELLDNIKAFGRN- 156
+ + + + + V +++ +R+++ + ++ ++ A ++ I G+
Sbjct: 102 IEELKKKANIKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITE-GKKE 160
Query: 157 ---ATELMAQAAKHGAEGSSATQGELLDNIKAFGRNA 190
A ++ +GAE + D I A G +
Sbjct: 161 REVAAKVEYLMKMNGAEKPA------FDTIIASGYRS 191
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 31.5 bits (71), Expect = 0.52
Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 33/177 (18%)
Query: 285 AYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANM 344
AY + L E L+S +S ++ + +R+A++ ++ +
Sbjct: 58 AYKSTIGRDLLEDLKSELSSNFEQVILGMMTP----TVLYDVQELRRAMKGAGTDEGCLI 113
Query: 345 SIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESII 404
I + + + R++ + Y ++ SLEE + S
Sbjct: 114 EI-------------LASRNPEEIRRINQT-------------YQQQYGRSLEEDICSDT 147
Query: 405 SG---AALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARS 458
S L++ + RD+ A Q L + TD + I +R+
Sbjct: 148 SFMFQRVLVSLTAGGRDEGNYLDDALVKQDAQDLYEAGEKRWGTDEVKFLSILCSRN 204
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 31.5 bits (71), Expect = 0.59
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 334 QDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVR 393
Q ++ ++ + + L+ +C ++ +R + + E + +P
Sbjct: 55 QSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYM---YLTEEILKKNPDVCAFVEV 111
Query: 394 PSLEERLESIISGAALMA 411
PSL+ R + +A
Sbjct: 112 PSLDARQAMLAMEVPRLA 129
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 31.4 bits (72), Expect = 0.61
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 115 ADMVDVHLLLKSLRVVEDD--LEKVKNASSQG-----ELLDNIKAFGRN----ATELMAQ 163
A+ + L++ LR+++ D ++ +K A+ +L I+ G + + EL
Sbjct: 115 AEFIPTSGLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRP-GVSEIEVSNELEFF 173
Query: 164 AAKHGAEGSSATQGELLDNIKAFGRNA 190
K GA SS D I A G +
Sbjct: 174 MRKQGATSSS------FDIIVASGLRS 194
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 31.0 bits (71), Expect = 0.81
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 115 ADMVDVHLLLKSLRVVEDD--LEKVKNASSQG-----ELLDNIKAFGRN----ATELMAQ 163
+ + +K +R+V+D+ +EK+K A E + I+A G A L
Sbjct: 118 RKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRA-GMTEKEIAALLEYT 176
Query: 164 AAKHGAEGSSATQGELLDNIKAFGRNA 190
K GAEG + D I A G +
Sbjct: 177 MRKEGAEGVA------FDTIVASGCRS 197
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 12/36 (33%)
Query: 263 SLKKRSVSLLHQVYERMVMD--P-LAYNERVRPSLE 295
+LKK SL ++Y D P LA ++ ++E
Sbjct: 21 ALKKLQASL--KLYAD---DSAPALA----IKATME 47
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 29.5 bits (66), Expect = 1.7
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 4/113 (3%)
Query: 116 DMVDVHLLLKSLRVVEDDLE----KVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEG 171
D+ V L S R + +E K++ A S L
Sbjct: 36 DLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLN 95
Query: 172 SSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHS 224
SS + L+++ +F AT+ + +++ E D A + +S
Sbjct: 96 SSKARLRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYS 148
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 30.0 bits (67), Expect = 2.3
Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 33/177 (18%)
Query: 285 AYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANM 344
+Y L L+ ++G R + ++ A+ + ++ +
Sbjct: 60 SYKSLYGKDLIADLKYELTGKFERLIVGLMRP----PAYCDAKEIKDAISGIGTDEKCLI 115
Query: 345 SIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESII 404
I + +T + QL A Y + LE +
Sbjct: 116 EI-------------LASRTNEQMHQLVAA-------------YKDAYERDLEADIIGDT 149
Query: 405 SG---AALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARS 458
SG L+ TR++ Q L + TD + I RS
Sbjct: 150 SGHFQKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRS 206
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 28.8 bits (64), Expect = 3.7
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 33/177 (18%)
Query: 285 AYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANM 344
Y L++ L+ +SG V + ++++++ + A +
Sbjct: 59 EYQAAYGKELKDDLKGDLSGHFEHLMVALVTP----PAVFDAKQLKKSMKGAGTNEDALI 114
Query: 345 SIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESII 404
I + +T + + +A Y + SL + + S
Sbjct: 115 EI-------------LTTRTSRQMKDISQA-------------YYTVYKKSLGDDISSET 148
Query: 405 SG---AALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARS 458
SG AL+ ++ RD+ + Q L + TD I RS
Sbjct: 149 SGDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRS 205
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA
cleavage, RNAse, DN protein; 2.10A {Drosophila
melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Length = 249
Score = 28.5 bits (63), Expect = 3.9
Identities = 13/115 (11%), Positives = 29/115 (25%), Gaps = 5/115 (4%)
Query: 315 RDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKA 374
+ RE I + ++ + S ++L +
Sbjct: 34 EQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKLAEL 93
Query: 375 VVDHERMVMDPLAYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECN 429
V Y++ + + I L A TR+ E + + +
Sbjct: 94 VPAG-----QYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLKIS 143
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.50.1.1
Length = 98
Score = 27.1 bits (60), Expect = 4.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 324 AECNAVRQALQDLLSEYMANMSIKDPSEG 352
A+ A R L+ L+ +++ S PS G
Sbjct: 70 AKNKAARATLEILIPDFVKQTSESGPSSG 98
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 28.4 bits (64), Expect = 4.9
Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 115 ADMVDVHLLLKSLRVVEDD--LEKVKNASSQGE-----LLDNIKAFGRN----ATELMAQ 163
A++VDV +R+++ +++ + + +++ + A
Sbjct: 142 AELVDVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGD-QVPEYEVALHATQA 200
Query: 164 AAKHGAEGSSATQGELLDNIKAFGRNA 190
+ A+ + G N
Sbjct: 201 MVRAIADTFEDVELMDTWTWFQSGINT 227
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 27.1 bits (60), Expect = 5.7
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 186 FGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKH 223
+ R+ + + R+ L + A++KKH
Sbjct: 8 YMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKH 45
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 27.6 bits (61), Expect = 7.6
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 4/113 (3%)
Query: 116 DMVDVHLLLKSLRVVEDDLE----KVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEG 171
D+ V L++ + V +E +K A + ++
Sbjct: 51 DLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLN 110
Query: 172 SSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHS 224
+S Q LD + F AT + +++ + ++ H+
Sbjct: 111 TSRNQERHLDTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHA 163
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 27.6 bits (61), Expect = 7.8
Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 144 GELLDNIKAFGRNAT--ELMAQAAKHGAEGSSATQGELLDNIKAFGRNATEL--MAQAAK 199
GE L+ K G + ++ K + + + ++ +K+ + ++
Sbjct: 53 GEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHF-- 110
Query: 200 RQME-LKDPQLRDDLAAARAILKKHSTMLLT 229
+E L +L + L+ + +K S +++
Sbjct: 111 --VEHLDPERLFELLSLCYSKMKYSSYIVIE 139
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 28.0 bits (62), Expect = 8.1
Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 33/177 (18%)
Query: 285 AYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANM 344
AY + L+E L+ ++G + + + +R A++ L ++
Sbjct: 83 AYLQEKGKPLDEALKKALTGHLEEVALALLKT----PAQFDADELRAAMKGLGTDEDTLN 138
Query: 345 SIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESII 404
I + +T R++ + Y E ++ L + + S
Sbjct: 139 EI-------------LASRTNREIREINRV-------------YKEELKRDLAKDITSDT 172
Query: 405 SG---AALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARS 458
SG AL++ + R + + +AL + TD+ + + I RS
Sbjct: 173 SGDYQKALLSLAKGDRSEDLAINDDLADTDARALYEAGERRKGTDLNVFITILTTRS 229
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
nucleotide-binding, transferase, ATP-BIND
multifunctional enzyme; 1.95A {Corynebacterium
ammoniagenes}
Length = 338
Score = 27.9 bits (63), Expect = 8.4
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 203 ELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPE 239
+L + + D+ R +L + A + Y E
Sbjct: 302 QLLE-VMAKDVQKTRTLLAQDVQAHKMAPETYFLQAE 337
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 27.5 bits (61), Expect = 9.2
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 186 FGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKH 223
F ++A + A + ++ L + D L AA A ++K
Sbjct: 112 FQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKF 149
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A
{Sus scrofa} SCOP: a.102.1.3
Length = 402
Score = 27.8 bits (61), Expect = 9.4
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 391 RVRPSLEERLESIISGAALMADSNCTRDDR--RERIVAECNAVRQALQDLLSDFMETDIP 448
L R + A + RD + E + + + L + +
Sbjct: 194 EEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAG 253
Query: 449 ILVLIEAARSGNEKEVEKAAENFADHA 475
+L ++RSG+ K + F
Sbjct: 254 WFLLRHSSRSGDAKLRAHVIDTFLLLP 280
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein
structure initiative, PSI, structural genomics; 1.70A
{Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A
1zwl_A*
Length = 200
Score = 27.3 bits (61), Expect = 9.6
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 13/67 (19%)
Query: 158 TELMAQAAKHGAEGSSATQGELLDNIKAFGRNATELMAQAAKRQMELKDPQL----RDDL 213
T MA+ G E A R + + ++ +DL
Sbjct: 19 TAEMARQIARGVEQGGFE---------ARVRTVPAVSTECEAVAPDIPAEGALYATLEDL 69
Query: 214 AAARAIL 220
+
Sbjct: 70 KNCAGLA 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.351
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,215,866
Number of extensions: 460204
Number of successful extensions: 1566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1532
Number of HSP's successfully gapped: 102
Length of query: 481
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 384
Effective length of database: 3,993,456
Effective search space: 1533487104
Effective search space used: 1533487104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)