RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5464
(481 letters)
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 181
Score = 139 bits (351), Expect = 1e-39
Identities = 85/187 (45%), Positives = 109/187 (58%), Gaps = 33/187 (17%)
Query: 66 ATENFIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLK 125
A E+ ++GD M AA EFADDPCSS+KRGNMVRAAR LLSAVTRLLILADM DV+ LL
Sbjct: 12 AVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLV 71
Query: 126 SLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSATQGELLDNIKA 185
L+VVED + K++NA + + +L KA
Sbjct: 72 QLKVVEDGILKLRNAGN---------------------------------EQDLGIQYKA 98
Query: 186 FGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRHPELAAAKE 245
+L AAKRQ ELKD RD +AAAR IL+K+ +L TAS+ ++HP++AA K
Sbjct: 99 LKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKA 158
Query: 246 NRNFVLG 252
NR+ +
Sbjct: 159 NRDLIYK 165
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 125
Score = 102 bits (255), Expect = 1e-26
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 27/122 (22%)
Query: 19 EIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATENFIERG---- 74
T ++E LEP+ Q++ LV + V+AV+ A N + G
Sbjct: 3 VFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVSAVQAAVSNLVRVGKETV 62
Query: 75 -----------------------DAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRL 111
+ AA+ DP S R ++ +R +LS + L
Sbjct: 63 QTTEDQILKRDMPPAFIKVENACTKLVRAAQMLQADPYSVPARDYLIDGSRGILSGTSDL 122
Query: 112 LI 113
L+
Sbjct: 123 LL 124
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 127
Score = 102 bits (255), Expect = 1e-26
Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 38/142 (26%)
Query: 116 DMVDVHLLLKSLRVVEDDLEKVKNASSQGELLDNIKAFGRNATELMAQAAKHGAEGSSAT 175
D +V +++ + + + L + +
Sbjct: 2 DEAEVRKIIRVCKGILEYLTVAEVVET--------------------------------- 28
Query: 176 QGELLDNIKAFGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKHSTMLLTASKVYV 235
+L+ K G T++ +RQ EL + R L + +K+ +L++A K++V
Sbjct: 29 MEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFV 88
Query: 236 RHPE-----LAAAKENRNFVLG 252
+ A +NRNF +
Sbjct: 89 TTKNTKSQGIEEALKNRNFTVE 110
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 131
Score = 48.2 bits (115), Expect = 1e-07
Identities = 30/51 (58%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Query: 431 VRQALQDLLSD-FMETDIPILVLIEAARSGNEKEVEKAAENFADHANKLVE 480
+R+A+ D +SD F+ET++P+LVLIEAA++GNEKEV++ A+ F +HANKL+E
Sbjct: 6 LRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIE 56
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 158
Score = 42.1 bits (99), Expect = 3e-05
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 431 VRQALQDLLSD-FMETDIPILVLIEAARS-----GNEKEVEKAAENFADHANKLVE 480
+++A+ +SD F +T PI +L AA + E+ E+ A NF +HA +L
Sbjct: 99 MQEAMTQEVSDVFSDTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAARLGA 154
Score = 38.2 bits (89), Expect = 6e-04
Identities = 11/84 (13%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 295 EERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLE 354
+ + +++ +A+ R++ ++A+C+ V Q L + S
Sbjct: 28 QAAIRGLVAEGRRLANV-MMGPYRQD-LLAKCDRVDQLAAQLADLAARG---EGESPQAR 82
Query: 355 RAIDHMCRKTRDLRRQLRKAVVDH 378
+ +DL+ ++++A+
Sbjct: 83 AIAAQLQDSLKDLKARMQEAMTQE 106
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 138
Score = 38.7 bits (90), Expect = 3e-04
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 316 DDRRERIVAECNAVRQALQDLLSEYMANMSIKDPSEGLERAIDHMCRKTRDLRRQLRKA 374
+ A AV QAL +LL A+ + P+ ++A D + T ++ + A
Sbjct: 10 GQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDA 68
Score = 29.1 bits (65), Expect = 0.53
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 15/78 (19%)
Query: 418 DDRRERIVAECNAVRQALQDLLSDFMET---------------DIPILVLIEAARSGNEK 462
+ A AV QAL +LL I + + G+
Sbjct: 10 GQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFSSMGDAG 69
Query: 463 EVEKAAENFADHANKLVE 480
E+ + A A + LV
Sbjct: 70 EMVRQARILAQATSDLVN 87
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Length = 343
Score = 30.0 bits (67), Expect = 0.57
Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 33/177 (18%)
Query: 285 AYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANM 344
AY + L+E L+ ++G + + + +R A++ L ++
Sbjct: 82 AYLQEKGKPLDEALKKALTGHLEEVALALLKT----PAQFDADELRAAMKGLGTDEDTLN 137
Query: 345 SIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESII 404
I + +T R++ + Y E ++ L + + S
Sbjct: 138 EI-------------LASRTNREIREINRV-------------YKEELKRDLAKDITSDT 171
Query: 405 SGA---ALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETDIPILVLIEAARS 458
SG AL++ + R + + +AL + TD+ + + I RS
Sbjct: 172 SGDYQKALLSLAKGDRSEDLAINDDLADTDARALYEAGERRKGTDLNVFITILTTRS 228
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
porcellus) [TaxId: 10141]}
Length = 123
Score = 28.3 bits (63), Expect = 0.97
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 203 ELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRH 237
+L D L DD+ + IL + +
Sbjct: 79 KLLDDDLTDDIMCVKKILDIKG---IDYWLAHKPL 110
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 123
Score = 28.3 bits (63), Expect = 1.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 203 ELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRH 237
+L D +L DD+A A+ IL + K Y
Sbjct: 79 KLLDDELDDDIACAKKILAIKG---IDYWKAYKPM 110
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 26.7 bits (59), Expect = 2.8
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 202 MELKDPQLRDDLAAARAILKKHSTMLLTASKVYVRH 237
+L + A+ I K+H A + H
Sbjct: 76 SDLLTDDITKAAKCAKKIYKRHR---FDAWYGWKNH 108
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 181
Score = 27.2 bits (60), Expect = 3.4
Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 10 AVKWDPKNLEIRTMSVEKTLEPLVLQVTTLVNTKGPSKKKKGRSKRAHVLVAAVEKATEN 69
A KW K +I ++ K + L+ +++ LV +K+ ++ A ++
Sbjct: 29 ARKWSSKGNDI--IAAAKRMALLMAEMSRLVRGGSGNKRA--------LIQCA-----KD 73
Query: 70 FIERGDAMSLAAREFADDPCSSLKRGNMVRAARNLLSAVTRLLILADMVDVHLLLKSLRV 129
+ D ++ A+E A R N+++ + + T+L IL+ + +L ++
Sbjct: 74 IAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKA-TMLGRTNIS 132
Query: 130 VEDDLEKVKN 139
E+ + +
Sbjct: 133 DEESEQATEM 142
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 25.7 bits (56), Expect = 5.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 186 FGRNATELMAQAAKRQMELKDPQLRDDLAAARAILKKH 223
F N E A ++ + D LAA + +LKKH
Sbjct: 2 FVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKH 39
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 27.0 bits (58), Expect = 5.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 145 ELLDNIKAFGRNATELMAQAAKHGAEGSSATQ--GELLDNIK 184
+L+D + E+ + +G S+ G+L+D+I
Sbjct: 419 DLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 460
>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum)
[TaxId: 3635]}
Length = 318
Score = 26.5 bits (58), Expect = 7.4
Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 33/165 (20%)
Query: 285 AYNERVRPSLEERLESIISGAALMADSNCTRDDRRERIVAECNAVRQALQDLLSEYMANM 344
Y E L + L+ +S + + +A + S M
Sbjct: 54 TYAETYGEDLLKALDKELSND----FERLVLLWALDPAERDALLANEATKRWTSSNQVLM 109
Query: 345 SIKDPSEGLERAIDHMCRKTRDLRRQLRKAVVDHERMVMDPLAYNERVRPSLEERLESII 404
I C ++ + R+A Y+ R + SLEE +
Sbjct: 110 EI-------------ACTRSANQLLHARQA-------------YHARYKKSLEEDVAHHT 143
Query: 405 SGA---ALMADSNCTRDDRRERIVAECNAVRQALQDLLSDFMETD 446
+G L+ + R + E + + L + +S+ +D
Sbjct: 144 TGDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAYSD 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.351
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,640,009
Number of extensions: 74797
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 38
Length of query: 481
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 392
Effective length of database: 1,185,626
Effective search space: 464765392
Effective search space used: 464765392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)