BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5467
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F2U|A Chain A, Crystal Structure Of Human Chromobox Homolog 1 (Cbx1)
Length = 55
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
+ VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct: 3 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 51
>pdb|3DM1|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|C Chain C, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|E Chain E, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|G Chain G, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
Length = 58
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
F VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI F++
Sbjct: 2 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 50
>pdb|3TZD|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3)
Length = 58
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
F VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI F++
Sbjct: 7 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 55
>pdb|2L11|A Chain A, Solution Nmr Structure Of The Cbx3 In Complex With
H3k9me3 Peptide
Length = 54
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
F VE +LD+R+VNGK+EY LKWKG++D DNTWEPEENLDCP+LI F++
Sbjct: 3 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 51
>pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From
Mouse Modifier Protein 1, Nmr, 26 Structures
pdb|1GUW|A Chain A, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 73
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIH 75
LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F+
Sbjct: 20 LDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 62
>pdb|3FDT|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
Length = 59
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 43/48 (89%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFI 74
+ VE +LD+R+V G++EYLLKWKG+S++ NTWEPE+NLDCP+LI+ F+
Sbjct: 4 YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFM 51
>pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|A Chain A, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9
Length = 69
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 36/47 (76%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
++VE I+D+R+ G +EY LKWKGY + +NTWEPE NLDC DLI +
Sbjct: 17 YAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQY 63
>pdb|3H91|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|3H91|B Chain B, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
Length = 54
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E IL KR+ GK+EYL+KW+G+S N+WEPEEN+ P L+ F
Sbjct: 4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 50
>pdb|2D9U|A Chain A, Solution Structure Of The Chromo Domain Of Chromobox
Homolog 2 From Human
Length = 74
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E IL KR+ GK+EYL+KW+G+S N+WEPEEN+ P L+ F
Sbjct: 11 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 57
>pdb|2K28|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 4
Length = 60
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+VE+I KRI G++EYL+KW+G+S NTWEPEEN+ P L+ F
Sbjct: 6 FAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAF 52
>pdb|3I8Z|A Chain A, Crystal Structure Of Human Chromobox Homolog 4 (Cbx4)
Length = 55
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+VE+I KRI G++EYL+KW+G+S NTWEPEEN+ P L+ F
Sbjct: 4 FAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAF 50
>pdb|3I91|A Chain A, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8)
With H3k9 Peptide
pdb|3I91|B Chain B, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8)
With H3k9 Peptide
Length = 54
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E +L +RI G++EYL+KWKG+S +TWEPEEN+ L+A F
Sbjct: 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 50
>pdb|2DNV|A Chain A, Solution Structure Of Rsgi Ruh-055, A Chromo Domain From
Mus Musculus Cdna
Length = 64
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E +L +RI G++EYL+KWKG+S +TWEPEEN+ L+A F
Sbjct: 11 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 57
>pdb|3I90|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6)
With H3k27 Peptide
pdb|3I90|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6)
With H3k27 Peptide
Length = 51
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E+I+ +RI G+IEYL+KWKG++ +TWEPEEN+ LIA F
Sbjct: 3 FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAF 49
>pdb|3GV6|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6)
With H3k9 Peptide
Length = 58
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E+I+ +RI G+IEYL+KWKG++ +TWEPEEN+ LIA F
Sbjct: 4 FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAF 50
>pdb|2KVM|A Chain A, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 74
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+VE+I KR+ GK+EYL+KWKG+ +TWEPEE++ P L+ +
Sbjct: 14 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 60
>pdb|2L12|A Chain A, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|2L1B|A Chain A, Solution Nmr Structure Of The Chromobox Protein Cbx7
With H3k27me3
Length = 56
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+VE+I KR+ GK+EYL+KWKG+ +TWEPEE++ P L+ +
Sbjct: 5 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 51
>pdb|2K1B|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 7
Length = 73
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+VE+I KR+ GK+EYL+KWKG+ +TWEPEE++ P L+ +
Sbjct: 22 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 68
>pdb|2DNT|A Chain A, Solution Structure Of Rsgi Ruh-064, A Chromo Domain From
Human Cdna
Length = 78
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
+ VE I+DKR GK EYL++WKGY +D+TWEPE++L +C + I +F
Sbjct: 14 YEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF 62
>pdb|3QO2|A Chain A, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|B Chain B, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|C Chain C, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|D Chain D, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
Length = 64
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
F VE ILD + GK+ Y ++WKGY+ DD+TWEPE +L DC +++ F
Sbjct: 7 FEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 54
>pdb|3LWE|A Chain A, The Crystal Structure Of Mpp8
pdb|3LWE|B Chain B, The Crystal Structure Of Mpp8
pdb|3R93|A Chain A, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|B Chain B, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|C Chain C, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|D Chain D, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3SVM|A Chain A, Human Mpp8 - Human Dnmt3ak47me2 Peptide
Length = 62
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
F VE ILD + GK+ Y ++WKGY+ DD+TWEPE +L DC +++ F
Sbjct: 5 FEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 52
>pdb|4HAE|A Chain A, Crystal Structure Of The Cdyl2-Chromodomain
Length = 81
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEEN-LDCPDLIANF 73
+ VE I+DKR GK EYL++WKGY ++TWEPE + L C + I F
Sbjct: 24 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEF 72
>pdb|3MTS|A Chain A, Chromo Domain Of Human Histone-lysine
N-methyltransferase Suv39h1
pdb|3MTS|B Chain B, Chromo Domain Of Human Histone-lysine
N-methyltransferase Suv39h1
pdb|3MTS|C Chain C, Chromo Domain Of Human Histone-lysine
N-methyltransferase Suv39h1
Length = 64
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
VE + D + + + YL+KW+GY D ++TWEP +NL C ++ F
Sbjct: 3 VEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 47
>pdb|1PFB|A Chain A, Structural Basis For Specific Binding Of Polycomb
Chromodomain To Histone H3 Methylated At K27
Length = 55
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLI 70
++ E I+ KR+ G +EY +KWKG++ NTWEPE N+ LI
Sbjct: 4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLI 47
>pdb|1PDQ|A Chain A, Polycomb Chromodomain Complexed With The Histone H3 Tail
Containing Trimethyllysine 27
Length = 72
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 27 FSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
++ E I+ KR+ G +EY +KWKG++ NTWEPE N+
Sbjct: 21 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI 58
>pdb|3G7L|A Chain A, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 61
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL 64
+ VE IL R+ NG EY +KW GY DNTWEPE+NL
Sbjct: 8 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 46
>pdb|2RSN|A Chain A, Solution Structure Of The Chromodomain Of Chp1 In
Complex With H3k9me3 Peptide
Length = 75
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 27 FSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL 64
+ VE IL R+ NG EY +KW GY DNTWEPE+NL
Sbjct: 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 42 IEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIH 75
I + ++W+GY +++TWEP +NL DCP I F+
Sbjct: 332 IYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQ 366
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 42 IEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIH 75
I + ++W+GY +++TWEP +NL DCP I F+
Sbjct: 332 IYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQ 366
>pdb|2B2U|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2U|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2V|A Chain A, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2V|B Chain B, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2W|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4
pdb|2B2W|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4
pdb|2B2Y|A Chain A, Tandem Chromodomains Of Human Chd1
pdb|2B2Y|B Chain B, Tandem Chromodomains Of Human Chd1
Length = 187
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 40 GKIEYLLKWKGYSDDDNTWEPEENL 64
G+I+YL+KWKG+S NTWE EE L
Sbjct: 56 GEIQYLIKWKGWSHIHNTWETEETL 80
>pdb|2B2U|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2V|C Chain C, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2W|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4
pdb|2B2Y|C Chain C, Tandem Chromodomains Of Human Chd1
Length = 115
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 40 GKIEYLLKWKGYSDDDNTWEPEENL 64
G+I+YL+KWKG+S NTWE EE L
Sbjct: 56 GEIQYLIKWKGWSHIHNTWETEETL 80
>pdb|2B2T|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
pdb|2B2T|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 187
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 40 GKIEYLLKWKGYSDDDNTWEPEENL 64
G+I+YL+KWKG+S NTWE EE L
Sbjct: 56 GEIQYLIKWKGWSHIHNTWETEETL 80
>pdb|2B2T|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 115
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 40 GKIEYLLKWKGYSDDDNTWEPEENL 64
G+I+YL+KWKG+S NTWE EE L
Sbjct: 56 GEIQYLIKWKGWSHIHNTWETEETL 80
>pdb|1G6Z|A Chain A, Solution Structure Of The Clr4 Chromo Domain
Length = 70
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 27 FSVETILDKRI-VNGKIE-YLLKWKGYSDDDNTWEPEENLD-CPDLIANF 73
+ VE I+D+++ NG ++ Y ++W YS +TWEP ENL C ++A +
Sbjct: 9 YEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 58
>pdb|1X3P|A Chain A, 3d Solution Structure Of The Chromo-3 Domain Of Cpsrp43
Length = 54
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 4/40 (10%)
Query: 29 VETILDKRIVN-GK-IEYLLKWKGYSDDDNTWEPEENLDC 66
E+++ KR+ + GK IEYL+KW SD TWEP++N+D
Sbjct: 3 AESVIGKRVGDDGKTIEYLVKWTDMSD--ATWEPQDNVDS 40
>pdb|2RSO|A Chain A, Solution Structure Of The Chromodomain Of Swi6
Length = 92
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 32 ILDKRIV--NGKIEYLLKWKGYSD-DDNTWEPEENLD-CPDLIANF 73
+L R+ G EYLLKW+GY D DNTW E + C LI +
Sbjct: 36 VLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAY 81
>pdb|3KUP|A Chain A, Crystal Structure Of The Cbx3 Chromo Shadow Domain
pdb|3KUP|B Chain B, Crystal Structure Of The Cbx3 Chromo Shadow Domain
pdb|3KUP|C Chain C, Crystal Structure Of The Cbx3 Chromo Shadow Domain
pdb|3KUP|D Chain D, Crystal Structure Of The Cbx3 Chromo Shadow Domain
Length = 65
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ F
Sbjct: 16 ERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAF 59
>pdb|1DZ1|A Chain A, Mouse Hp1 (M31) C Terminal (Shadow Chromo) Domain
pdb|1DZ1|B Chain B, Mouse Hp1 (M31) C Terminal (Shadow Chromo) Domain
Length = 70
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ +F
Sbjct: 19 ERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 62
>pdb|1S4Z|A Chain A, Hp1 Chromo Shadow Domain In Complex With Pxvxl Motif Of
Caf- 1
pdb|1S4Z|B Chain B, Hp1 Chromo Shadow Domain In Complex With Pxvxl Motif Of
Caf- 1
Length = 75
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ +F
Sbjct: 19 ERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 62
>pdb|2FMM|A Chain A, Crystal Structure Of Emsy-Hp1 Complex
pdb|2FMM|B Chain B, Crystal Structure Of Emsy-Hp1 Complex
pdb|2FMM|C Chain C, Crystal Structure Of Emsy-Hp1 Complex
pdb|2FMM|D Chain D, Crystal Structure Of Emsy-Hp1 Complex
Length = 74
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ +F
Sbjct: 19 ERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 62
>pdb|3Q6S|A Chain A, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
pdb|3Q6S|B Chain B, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
pdb|3Q6S|C Chain C, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
pdb|3Q6S|D Chain D, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
Length = 78
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ +F
Sbjct: 13 ERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 56
>pdb|3I3C|A Chain A, Crystal Structural Of Cbx5 Chromo Shadow Domain
pdb|3I3C|B Chain B, Crystal Structural Of Cbx5 Chromo Shadow Domain
pdb|3I3C|C Chain C, Crystal Structural Of Cbx5 Chromo Shadow Domain
pdb|3I3C|D Chain D, Crystal Structural Of Cbx5 Chromo Shadow Domain
Length = 75
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ G + +L+KWK + D E N+ CP ++ F
Sbjct: 26 EKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAF 69
>pdb|2EE1|A Chain A, Solution Structures Of The Chromo Domain Of Human
Chromodomain Helicase-Dna-Binding Protein 4
Length = 64
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 30 ETILDKRIVN------GKIEYLLKWKGYSDDDNTWEPEE 62
E ++ RI+N G + YL+KW+ D +WE E+
Sbjct: 10 EWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESED 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.141 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,858,562
Number of Sequences: 62578
Number of extensions: 57876
Number of successful extensions: 212
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 54
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)