Query psy5467
Match_columns 77
No_of_seqs 121 out of 1021
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:18:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00385 Chromo: Chromo (CHRro 99.8 1.4E-18 3E-23 93.3 5.7 50 27-76 1-55 (55)
2 cd00024 CHROMO Chromatin organ 99.7 7.6E-17 1.7E-21 85.9 5.1 52 25-76 1-55 (55)
3 KOG2748|consensus 99.6 1.2E-17 2.6E-22 116.9 -1.2 55 22-76 6-60 (369)
4 KOG1911|consensus 99.6 1.7E-15 3.6E-20 103.5 3.2 59 18-76 40-99 (270)
5 smart00298 CHROMO Chromatin or 99.5 6E-15 1.3E-19 78.3 3.0 51 26-76 1-53 (55)
6 cd00034 ChSh Chromo Shadow Dom 98.4 4.8E-07 1E-11 48.6 3.0 45 29-76 2-49 (54)
7 PF01393 Chromo_shadow: Chromo 98.3 3.1E-07 6.7E-12 50.1 1.7 47 28-76 4-52 (58)
8 KOG0384|consensus 98.3 2.5E-07 5.4E-12 73.5 1.9 51 25-76 283-336 (1373)
9 smart00300 ChSh Chromo Shadow 98.1 5.1E-07 1.1E-11 49.6 0.0 46 28-76 8-55 (61)
10 PF11717 Tudor-knot: RNA bindi 97.4 0.00063 1.4E-08 36.3 4.9 41 24-64 13-53 (55)
11 PF14061 Mtf2_C: Polycomb-like 97.2 0.00076 1.7E-08 35.5 3.7 22 31-52 27-49 (50)
12 KOG0384|consensus 96.6 0.00073 1.6E-08 54.6 1.0 36 41-76 225-265 (1373)
13 KOG0383|consensus 84.6 0.32 7E-06 37.9 0.2 46 28-73 210-258 (696)
14 PLN00104 MYST -like histone ac 78.1 3.8 8.1E-05 30.6 3.8 41 25-65 68-112 (450)
15 PF08940 DUF1918: Domain of un 72.2 2.2 4.9E-05 23.1 1.1 22 30-51 23-44 (58)
16 COG5475 Uncharacterized small 49.4 20 0.00043 19.4 2.1 15 42-56 29-44 (60)
17 PF15010 FAM131: Putative cell 30.9 42 0.00091 23.8 2.0 23 38-60 46-68 (293)
No 1
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=99.76 E-value=1.4e-18 Score=93.30 Aligned_cols=50 Identities=58% Similarity=1.085 Sum_probs=46.2
Q ss_pred EEEEEEEeEEEECCeE---EEEEEecCCCCCCCCcccCCCC-C-cHHHHHHHHHh
Q psy5467 27 FSVETILDKRIVNGKI---EYLLKWKGYSDDDNTWEPEENL-D-CPDLIANFIHI 76 (77)
Q Consensus 27 y~ve~Il~~r~~~~~~---~ylVkW~G~~~~~~TWE~~~~l-~-~~~ll~~y~~~ 76 (77)
|+|++||++|..++.. +|||||+|++..++|||++++| + ++++|++|++|
T Consensus 1 ~~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~r 55 (55)
T PF00385_consen 1 YEVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHHH
T ss_pred CEEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhCC
Confidence 7899999999987777 9999999999999999999999 4 49999999986
No 2
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=99.68 E-value=7.6e-17 Score=85.92 Aligned_cols=52 Identities=58% Similarity=1.078 Sum_probs=47.1
Q ss_pred ccEEEEEEEeEEEEC--CeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467 25 AEFSVETILDKRIVN--GKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI 76 (77)
Q Consensus 25 ~~y~ve~Il~~r~~~--~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~ 76 (77)
++|.|++||++|... +..+|||||+|++..++||++..+| .++.+|.+|.++
T Consensus 1 ~e~~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~~ 55 (55)
T cd00024 1 EEYEVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKKK 55 (55)
T ss_pred CCceEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHhC
Confidence 368999999999987 8999999999999999999999999 457999999863
No 3
>KOG2748|consensus
Probab=99.64 E-value=1.2e-17 Score=116.87 Aligned_cols=55 Identities=53% Similarity=0.890 Sum_probs=52.6
Q ss_pred CCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 22 EEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 22 ~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
.++.+|.++.||.+|+++|+++|||||+||+..+|||||++||..+.||..|+++
T Consensus 6 vGe~VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDpRLi~AFe~r 60 (369)
T KOG2748|consen 6 VGERVFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDPRLIAAFEQR 60 (369)
T ss_pred chhhHHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCHHHHHHHHhh
Confidence 3688999999999999999999999999999999999999999999999999875
No 4
>KOG1911|consensus
Probab=99.56 E-value=1.7e-15 Score=103.55 Aligned_cols=59 Identities=64% Similarity=1.137 Sum_probs=53.3
Q ss_pred CCCCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCC-CCCcHHHHHHHHHh
Q psy5467 18 VAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEE-NLDCPDLIANFIHI 76 (77)
Q Consensus 18 ~~~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~-~l~~~~ll~~y~~~ 76 (77)
....++++.|+|++|+++|..+|..+|||+|+||+..++||||+. +++|+++|.+|.++
T Consensus 40 ~~~~~~~~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~ 99 (270)
T KOG1911|consen 40 ASEEEEEEEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKS 99 (270)
T ss_pred cccccccchhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHH
Confidence 334457789999999999999999999999999999999999999 66999999999875
No 5
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=99.53 E-value=6e-15 Score=78.34 Aligned_cols=51 Identities=53% Similarity=1.016 Sum_probs=46.4
Q ss_pred cEEEEEEEeEE-EECCeEEEEEEecCCCCCCCCcccCCCCC-cHHHHHHHHHh
Q psy5467 26 EFSVETILDKR-IVNGKIEYLLKWKGYSDDDNTWEPEENLD-CPDLIANFIHI 76 (77)
Q Consensus 26 ~y~ve~Il~~r-~~~~~~~ylVkW~G~~~~~~TWE~~~~l~-~~~ll~~y~~~ 76 (77)
.|.|++|+++| ..++..+|||||+|++..++||++..+|. ++++|.+|..+
T Consensus 1 ~~~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~~ 53 (55)
T smart00298 1 EYEVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKKK 53 (55)
T ss_pred CcchheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHHh
Confidence 36799999999 78888999999999999999999999995 99999999875
No 6
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=98.35 E-value=4.8e-07 Score=48.63 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=35.8
Q ss_pred EEEEEeEEEEC-CeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 29 VETILDKRIVN-GKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 29 ve~Il~~r~~~-~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
+++|++....+ |.+.||++|+| +. ....+..-+ .||.+|.+|+++
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~-~~--~~lVp~~~~~~k~P~~vI~FYE~ 49 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD-GQ--ASLVPNKELNVKCPLLVISFYEE 49 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC-Ce--EEEEEHHHHHhhCcHHHHHHHHH
Confidence 57788877766 99999999999 65 446666555 799999999874
No 7
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=98.32 E-value=3.1e-07 Score=50.08 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=38.9
Q ss_pred EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
..++|++.....|.+.|||||+|.+. .+..+..-+ .||++|.+|+++
T Consensus 4 ~~E~Ivg~~d~~G~l~~likwk~~~~--~~~v~~~~~~~k~Pq~vI~FYE~ 52 (58)
T PF01393_consen 4 EWEKIVGATDTNGELMFLIKWKNSGE--KDLVPSKEANEKCPQKVIKFYES 52 (58)
T ss_dssp TEEEEEEEEECTSSEEEEEEETTSSS--EEEEEHHHHHHHSHHHHHHHHHH
T ss_pred ChHHHheeecCCCcEEEEEEECCCCc--eEEeeHHHHHHHCcHHHHHHHHH
Confidence 47899999989999999999999764 456666544 799999999874
No 8
>KOG0384|consensus
Probab=98.31 E-value=2.5e-07 Score=73.53 Aligned_cols=51 Identities=27% Similarity=0.646 Sum_probs=43.6
Q ss_pred ccE-EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 25 AEF-SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 25 ~~y-~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
..| .|++||++..... .+|||||+|.+.+++|||.++.+ .++..+..|+.|
T Consensus 283 ~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~R 336 (1373)
T KOG0384|consen 283 KDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSR 336 (1373)
T ss_pred hhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhh
Confidence 345 5899999888665 99999999999999999999999 468888888765
No 9
>smart00300 ChSh Chromo Shadow Domain.
Probab=98.12 E-value=5.1e-07 Score=49.58 Aligned_cols=46 Identities=26% Similarity=0.589 Sum_probs=36.8
Q ss_pred EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
..++|++....+|.+.||++|+| +. ....+..-+ .||.+|.+|+++
T Consensus 8 ~~e~Ivg~~d~~G~l~flikwk~-~~--~~lVp~~~~~~k~P~~vI~FYE~ 55 (61)
T smart00300 8 SWEDIVGITKDDGELTFLIKWKD-DA--ASLVPNKEANVKCPQKVIRFYES 55 (61)
T ss_pred CHHHHhceecCCCeEEEEEEEeC-Cc--EEEEEHHHHHHHChHHHHHHHHH
Confidence 45678888888999999999999 64 456666555 799999999874
No 10
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=97.40 E-value=0.00063 Score=36.33 Aligned_cols=41 Identities=29% Similarity=0.636 Sum_probs=34.7
Q ss_pred CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
+..+-.-+|++.+..++..+|+|++.|++...+-|.+.++|
T Consensus 13 ~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i 53 (55)
T PF11717_consen 13 DGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRI 53 (55)
T ss_dssp TTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTE
T ss_pred CCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHc
Confidence 34555668999999999999999999999999999998876
No 11
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=97.21 E-value=0.00076 Score=35.52 Aligned_cols=22 Identities=36% Similarity=1.032 Sum_probs=17.7
Q ss_pred EEEeEEE-ECCeEEEEEEecCCC
Q psy5467 31 TILDKRI-VNGKIEYLLKWKGYS 52 (77)
Q Consensus 31 ~Il~~r~-~~~~~~ylVkW~G~~ 52 (77)
+|+.+|. -+|+.||||.|.|..
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 4566666 689999999999964
No 12
>KOG0384|consensus
Probab=96.63 E-value=0.00073 Score=54.56 Aligned_cols=36 Identities=36% Similarity=0.617 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCCCCCCcccCCCCC-----cHHHHHHHHHh
Q psy5467 41 KIEYLLKWKGYSDDDNTWEPEENLD-----CPDLIANFIHI 76 (77)
Q Consensus 41 ~~~ylVkW~G~~~~~~TWE~~~~l~-----~~~ll~~y~~~ 76 (77)
..+|||||+|+++-+|||++.+.|. --.-|++|.++
T Consensus 225 ~~qFlIKWkg~SyLHctWet~~~L~~~~~rG~kKv~nf~kK 265 (1373)
T KOG0384|consen 225 EEQFLIKWKGWSYLHCTWETESELLEMNVRGLKKVDNFKKK 265 (1373)
T ss_pred hhhhheeeccccceeccccchHHHHhhhHHHHHHHHHHHHH
Confidence 4789999999999999999999972 23455666554
No 13
>KOG0383|consensus
Probab=84.63 E-value=0.32 Score=37.85 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=34.2
Q ss_pred EEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCC-CC-CcHHHHHHH
Q psy5467 28 SVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEE-NL-DCPDLIANF 73 (77)
Q Consensus 28 ~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~-~l-~~~~ll~~y 73 (77)
.|.+|+.++. ..+...|+|+|+.......+|+... ++ .+...+++|
T Consensus 210 ~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~ 258 (696)
T KOG0383|consen 210 PIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEA 258 (696)
T ss_pred ccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCccccccc
Confidence 3557777774 6788999999999999999999887 33 444444443
No 14
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=78.11 E-value=3.8 Score=30.61 Aligned_cols=41 Identities=17% Similarity=0.450 Sum_probs=31.7
Q ss_pred ccEEEEEEEeEEE----ECCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467 25 AEFSVETILDKRI----VNGKIEYLLKWKGYSDDDNTWEPEENLD 65 (77)
Q Consensus 25 ~~y~ve~Il~~r~----~~~~~~ylVkW~G~~~~~~TWE~~~~l~ 65 (77)
..|-.-+|++.|. ..+..+|.|++.|++-.-+.|...++|+
T Consensus 68 g~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLd 112 (450)
T PLN00104 68 GKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLD 112 (450)
T ss_pred CCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhcc
Confidence 3444567888887 3356789999999999888998888873
No 15
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=72.24 E-value=2.2 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=14.5
Q ss_pred EEEEeEEEECCeEEEEEEecCC
Q psy5467 30 ETILDKRIVNGKIEYLLKWKGY 51 (77)
Q Consensus 30 e~Il~~r~~~~~~~ylVkW~G~ 51 (77)
=.|+.-+...|..-|+|+|.+.
T Consensus 23 GeIveV~g~dG~PPY~VRw~D~ 44 (58)
T PF08940_consen 23 GEIVEVRGPDGSPPYLVRWDDT 44 (58)
T ss_dssp EEEEE-S-SSS-S-EEEEETTT
T ss_pred eEEEEEECCCCCCCEEEEecCC
Confidence 3577777788999999999873
No 16
>COG5475 Uncharacterized small protein [Function unknown]
Probab=49.40 E-value=20 Score=19.43 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=10.5
Q ss_pred EEEEEEe-cCCCCCCC
Q psy5467 42 IEYLLKW-KGYSDDDN 56 (77)
Q Consensus 42 ~~ylVkW-~G~~~~~~ 56 (77)
-+|+++| .|++....
T Consensus 29 Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 29 GMYECRWFDGYGVKRE 44 (60)
T ss_pred CeEEEEEecCCCcccc
Confidence 4799999 66765433
No 17
>PF15010 FAM131: Putative cell signalling
Probab=30.94 E-value=42 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.700 Sum_probs=19.4
Q ss_pred ECCeEEEEEEecCCCCCCCCccc
Q psy5467 38 VNGKIEYLLKWKGYSDDDNTWEP 60 (77)
Q Consensus 38 ~~~~~~ylVkW~G~~~~~~TWE~ 60 (77)
.+|++--||.|+||.....+|+.
T Consensus 46 aqGrVAHlIEWkgW~~~~~~~~~ 68 (293)
T PF15010_consen 46 AQGRVAHLIEWKGWGKPRSSPEA 68 (293)
T ss_pred hcccceeeeeecCCCCCCCChhh
Confidence 46888899999999998888854
Done!