Query psy5467
Match_columns 77
No_of_seqs 121 out of 1021
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:19:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i91_A Chromobox protein homol 99.9 1.3E-23 4.4E-28 112.6 6.0 53 24-76 1-53 (54)
2 1ap0_A Modifier protein 1; chr 99.9 3.3E-23 1.1E-27 117.1 7.2 60 17-76 4-63 (73)
3 3h91_A Chromobox protein homol 99.9 2.2E-23 7.6E-28 111.7 5.8 53 24-76 1-53 (54)
4 2rso_A Chromatin-associated pr 99.9 1.3E-22 4.5E-27 119.1 8.6 56 21-76 25-84 (92)
5 2rsn_A Chromo domain-containin 99.9 9.8E-23 3.3E-27 115.8 7.2 55 22-76 17-73 (75)
6 3f2u_A Chromobox protein homol 99.9 4.1E-23 1.4E-27 111.1 5.1 52 25-76 1-52 (55)
7 2k1b_A Chromobox protein homol 99.9 3.5E-23 1.2E-27 117.1 5.0 58 19-76 14-71 (73)
8 3fdt_A Chromobox protein homol 99.9 4E-23 1.4E-27 112.6 4.9 52 25-76 2-53 (59)
9 3lwe_A M-phase phosphoprotein 99.9 3.7E-23 1.3E-27 113.7 4.2 54 23-76 1-55 (62)
10 1q3l_A Heterochromatin protein 99.9 9.5E-23 3.2E-27 114.2 5.4 55 22-76 12-66 (69)
11 2dnv_A Chromobox protein homol 99.9 7E-23 2.4E-27 113.2 4.6 56 21-76 5-60 (64)
12 3g7l_A Chromo domain-containin 99.9 9.2E-23 3.1E-27 111.8 4.8 56 21-76 2-58 (61)
13 1pdq_A Polycomb protein; methy 99.9 1.4E-22 4.7E-27 114.4 5.2 56 21-76 15-70 (72)
14 1pfb_A Polycomb protein; chrom 99.9 2.2E-22 7.6E-27 108.1 5.7 53 24-76 1-53 (55)
15 2d9u_A Chromobox protein homol 99.9 7E-22 2.4E-26 111.9 7.3 56 21-76 5-60 (74)
16 2kvm_A Chromobox protein homol 99.9 9.8E-22 3.3E-26 111.3 7.4 57 20-76 7-63 (74)
17 1g6z_A CLR4 protein; transfera 99.8 1.9E-22 6.4E-27 113.1 1.0 56 21-76 3-61 (70)
18 3mts_A Histone-lysine N-methyl 99.8 1.7E-21 5.7E-26 107.7 4.6 50 28-77 2-51 (64)
19 2dnt_A Chromodomain protein, Y 99.8 1.5E-21 5.3E-26 111.4 3.8 55 22-76 9-65 (78)
20 4hae_A CDY-like 2, chromodomai 99.8 3E-22 1E-26 115.2 -1.4 55 22-76 19-75 (81)
21 2epb_A Chromodomain-helicase-D 99.7 5.4E-18 1.8E-22 94.5 5.6 52 24-76 9-66 (68)
22 2ee1_A Chromodomain helicase-D 99.6 5.5E-17 1.9E-21 89.5 2.4 53 24-76 9-64 (64)
23 1x3p_A Cpsrp43; chromo-2 domai 99.6 1.2E-18 4.2E-23 93.3 -4.4 46 28-76 2-49 (54)
24 2b2y_C CHD-1, chromodomain-hel 99.5 6.7E-17 2.3E-21 97.9 -6.0 54 23-76 33-97 (115)
25 2h1e_A Chromo domain protein 1 99.4 1.2E-14 4E-19 93.7 1.0 52 25-76 119-177 (177)
26 2b2y_A CHD-1, chromodomain-hel 99.4 4.2E-14 1.4E-18 91.7 2.1 51 26-76 129-185 (187)
27 3kup_A Chromobox protein homol 99.3 6.6E-13 2.3E-17 73.2 0.7 51 26-76 12-62 (65)
28 2fmm_A Chromobox protein homol 99.2 1.5E-11 5.3E-16 69.3 3.5 50 25-76 14-65 (74)
29 3p7j_A Heterochromatin protein 99.2 9.3E-12 3.2E-16 72.1 2.7 53 24-76 23-75 (87)
30 3i3c_A Chromobox protein homol 99.2 2.5E-12 8.7E-17 72.7 -0.1 51 26-76 22-72 (75)
31 3mwy_W Chromo domain-containin 99.1 5.2E-12 1.8E-16 94.7 -0.1 53 23-75 34-108 (800)
32 3q6s_A Chromobox protein homol 99.1 6.8E-12 2.3E-16 71.4 0.2 51 26-76 9-59 (78)
33 2h1e_A Chromo domain protein 1 99.1 5.4E-11 1.8E-15 76.5 2.6 50 27-76 13-84 (177)
34 2b2y_A CHD-1, chromodomain-hel 99.0 6.4E-12 2.2E-16 81.4 -2.2 54 23-76 33-97 (187)
35 1e0b_A SWI6 protein; chromatin 98.2 3.3E-07 1.1E-11 50.7 1.4 46 28-76 12-60 (68)
36 3mwy_W Chromo domain-containin 98.1 3E-07 1E-11 69.0 -0.2 51 26-76 145-202 (800)
37 2ro0_A Histone acetyltransfera 96.7 0.0037 1.3E-07 36.1 4.8 39 26-64 37-75 (92)
38 2lcc_A AT-rich interactive dom 96.6 0.0032 1.1E-07 35.1 4.0 39 26-64 23-61 (76)
39 3ui2_A Signal recognition part 96.5 0.0028 9.6E-08 40.6 4.0 46 28-76 188-233 (244)
40 2lrq_A Protein MRG15, NUA4 com 94.9 0.0013 4.4E-08 37.5 0.0 36 29-64 29-64 (85)
41 2f5k_A MORF-related gene 15 is 95.8 0.016 5.4E-07 34.0 4.4 39 26-64 36-74 (102)
42 2rnz_A Histone acetyltransfera 95.8 0.014 4.6E-07 33.9 3.9 40 26-65 39-78 (94)
43 2eko_A Histone acetyltransfera 95.8 0.0068 2.3E-07 34.6 2.6 42 24-65 26-67 (87)
44 2bud_A Males-absent on the fir 95.1 0.028 9.6E-07 32.4 3.8 39 26-64 29-70 (92)
45 1wgs_A MYST histone acetyltran 94.8 0.11 3.9E-06 31.5 6.0 40 26-65 27-68 (133)
46 3m9q_A Protein MALE-specific l 93.8 0.049 1.7E-06 31.8 2.8 40 24-64 37-81 (101)
47 3m9p_A MALE-specific lethal 3 92.2 0.087 3E-06 31.3 2.3 39 25-64 38-81 (110)
48 2eqm_A PHD finger protein 20-l 91.5 0.39 1.3E-05 27.1 4.4 20 43-62 49-68 (88)
49 3oa6_A MALE-specific lethal 3 90.0 0.19 6.7E-06 29.7 2.3 38 26-64 39-81 (110)
50 3e9g_A Chromatin modification- 76.0 0.96 3.3E-05 27.5 1.1 25 40-64 73-97 (130)
51 2k3y_A Chromatin modification- 58.1 2.4 8.3E-05 25.8 0.3 22 43-64 78-99 (136)
52 3sd4_A PHD finger protein 20; 47.6 29 0.00099 18.0 4.6 33 29-63 30-62 (69)
53 2a7y_A Hypothetical protein RV 38.1 7.1 0.00024 21.9 0.1 20 31-50 27-46 (83)
54 4ft4_B DNA (cytosine-5)-methyl 34.5 89 0.0031 23.2 5.5 51 23-73 309-364 (784)
No 1
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=99.89 E-value=1.3e-23 Score=112.64 Aligned_cols=53 Identities=45% Similarity=0.844 Sum_probs=50.3
Q ss_pred CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
+++|+|++||++|..+|+++|||||+||+..++||||.+||.|+++|.+|++|
T Consensus 1 e~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~R 53 (54)
T 3i91_A 1 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 53 (54)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCCHHHHHHHHHC
T ss_pred CCeEEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCCCHHHHHHHHhc
Confidence 36899999999999999999999999999999999999999999999999986
No 2
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=99.89 E-value=3.3e-23 Score=117.09 Aligned_cols=60 Identities=68% Similarity=1.251 Sum_probs=55.1
Q ss_pred CCCCCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 17 ~~~~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
..+.++++++|+|++||++|..+|.++|||||+||+..++||||.+||+|+++|.+|.++
T Consensus 4 ~~~~~~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL~~~~li~~f~~~ 63 (73)
T 1ap0_A 4 EEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS 63 (73)
T ss_dssp SSSCCSCSSCCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTCCCHHHHHHHTTT
T ss_pred CCcccCCCceEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHCCCHHHHHHHHHH
Confidence 344566788999999999999999999999999999999999999999999999999875
No 3
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=99.89 E-value=2.2e-23 Score=111.74 Aligned_cols=53 Identities=47% Similarity=0.906 Sum_probs=49.9
Q ss_pred CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
+++|+|++||++|..+|+++|||||+||+..++||||.+||.|+++|.+|++|
T Consensus 1 e~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~r 53 (54)
T 3h91_A 1 EQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 53 (54)
T ss_dssp CCEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBCSHHHHHHHHC-
T ss_pred CCceEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999876
No 4
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=99.88 E-value=1.3e-22 Score=119.13 Aligned_cols=56 Identities=46% Similarity=0.910 Sum_probs=50.3
Q ss_pred CCCCccEEEEEEEeEEE--ECCeEEEEEEecCCCC-CCCCcccCCCC-CcHHHHHHHHHh
Q psy5467 21 EEEGAEFSVETILDKRI--VNGKIEYLLKWKGYSD-DDNTWEPEENL-DCPDLIANFIHI 76 (77)
Q Consensus 21 ~~~~~~y~ve~Il~~r~--~~~~~~ylVkW~G~~~-~~~TWE~~~~l-~~~~ll~~y~~~ 76 (77)
..++++|+|++||++|. ++|+++|||||+||+. .++||||+.|| +|++||.+|+++
T Consensus 25 ~~~~eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~~c~~li~~f~~~ 84 (92)
T 2rso_A 25 EEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNE 84 (92)
T ss_dssp CCCCCCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGGTSHHHHHHHHHH
T ss_pred cCcCceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHhhHHHHHHHHHHH
Confidence 34667999999999998 4689999999999984 88999999999 899999999975
No 5
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=99.88 E-value=9.8e-23 Score=115.76 Aligned_cols=55 Identities=40% Similarity=0.760 Sum_probs=50.7
Q ss_pred CCCccEEEEEEEeEEEE-CCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467 22 EEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI 76 (77)
Q Consensus 22 ~~~~~y~ve~Il~~r~~-~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~ 76 (77)
+++++|+|++||++|.. +|+++|||||+||+..++||||++|| +|+++|.+|+++
T Consensus 17 ~~~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 73 (75)
T 2rsn_A 17 TDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKKR 73 (75)
T ss_dssp CGGGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGTTTHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHccChHHHHHHHHHh
Confidence 46679999999999985 68999999999999999999999999 799999999976
No 6
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=99.88 E-value=4.1e-23 Score=111.09 Aligned_cols=52 Identities=71% Similarity=1.385 Sum_probs=49.1
Q ss_pred ccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 25 ~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
++|+|++||++|..+|+++|||||+||+..++||||++||+|+++|.+|+++
T Consensus 1 gey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~ 52 (55)
T 3f2u_A 1 GEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS 52 (55)
T ss_dssp CCCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHC-
T ss_pred CcEEEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHCCCHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999999999999875
No 7
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=99.88 E-value=3.5e-23 Score=117.10 Aligned_cols=58 Identities=40% Similarity=0.714 Sum_probs=51.0
Q ss_pred CCCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 19 APEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 19 ~~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
...+++++|+|++||++|..+|+++|||||+||+..++||||++||.|+++|.+|.++
T Consensus 14 ~~~~~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~~~~li~~F~~~ 71 (73)
T 2k1b_A 14 LYFQGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 71 (73)
T ss_dssp -----CCCCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCSCHHHHHHHHTS
T ss_pred cccCCCceEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCCCHHHHHHHHHh
Confidence 3345778999999999999999999999999999999999999999999999999875
No 8
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=99.88 E-value=4e-23 Score=112.56 Aligned_cols=52 Identities=60% Similarity=1.287 Sum_probs=49.5
Q ss_pred ccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 25 ~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
++|+|++||++|..+|.++|||||+||+..++||||.+||+|+++|.+|+++
T Consensus 2 eey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~f~~~ 53 (59)
T 3fdt_A 2 EEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKK 53 (59)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHC-
T ss_pred CeEEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHCCCHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999875
No 9
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=99.87 E-value=3.7e-23 Score=113.68 Aligned_cols=54 Identities=44% Similarity=0.912 Sum_probs=51.5
Q ss_pred CCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467 23 EGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI 76 (77)
Q Consensus 23 ~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~ 76 (77)
++++|+|++||++|..+|.++|||||+||+..++||||++|| +|+++|.+|+++
T Consensus 1 ge~~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 55 (62)
T 3lwe_A 1 GEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKK 55 (62)
T ss_dssp CCCSCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHTTCHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhhccHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999 899999999976
No 10
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=99.87 E-value=9.5e-23 Score=114.21 Aligned_cols=55 Identities=55% Similarity=1.099 Sum_probs=49.5
Q ss_pred CCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 22 EEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 22 ~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
.++++|+|++||++|..+|+++|||||+||+..++||||++||+|+++|.+|.++
T Consensus 12 ~~~~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL~c~~lI~~F~~~ 66 (69)
T 1q3l_A 12 EEEEEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS 66 (69)
T ss_dssp ----CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEECHHHHHHHHHH
T ss_pred cCCCcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHCCCHHHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999999875
No 11
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=99.87 E-value=7e-23 Score=113.15 Aligned_cols=56 Identities=43% Similarity=0.781 Sum_probs=52.3
Q ss_pred CCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 21 ~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
.+++++|+|++||++|..+|+++|||||+||+..++||||++||.|+++|.+|+++
T Consensus 5 ~~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~li~~f~~~ 60 (64)
T 2dnv_A 5 SSGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFESG 60 (64)
T ss_dssp SSSCCCCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCCHHHHHHHHCC
T ss_pred cCCCceEEEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999888999999876
No 12
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=99.87 E-value=9.2e-23 Score=111.78 Aligned_cols=56 Identities=39% Similarity=0.672 Sum_probs=49.8
Q ss_pred CCCCccEEEEEEEeEEEECCeE-EEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 21 EEEGAEFSVETILDKRIVNGKI-EYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 21 ~~~~~~y~ve~Il~~r~~~~~~-~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
.+++++|+|++||++|..+|.. +|||||+||+..++||||++||.|+++|.+|+++
T Consensus 2 E~~~~ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~~~~li~~~~~~ 58 (61)
T 3g7l_A 2 ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKK 58 (61)
T ss_dssp ---CCEEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGTBCHHHHHHHHH
T ss_pred CCCCcEEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCCCHHHHHHHHHH
Confidence 3578899999999999988877 9999999999999999999999999999998865
No 13
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=99.87 E-value=1.4e-22 Score=114.35 Aligned_cols=56 Identities=36% Similarity=0.676 Sum_probs=49.7
Q ss_pred CCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 21 ~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
.+++++|+|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|.++
T Consensus 15 ~~~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~~~~lI~~F~~~ 70 (72)
T 1pdq_A 15 DPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 70 (72)
T ss_dssp ---CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHC--
T ss_pred CCCCceEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCCCHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999999999999764
No 14
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=99.87 E-value=2.2e-22 Score=108.14 Aligned_cols=53 Identities=38% Similarity=0.713 Sum_probs=50.1
Q ss_pred CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
+++|+|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|.++
T Consensus 1 d~~y~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~~~~li~~f~~~ 53 (55)
T 1pfb_A 1 DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQT 53 (55)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred CCEEEEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCCCHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999864
No 15
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7e-22 Score=111.89 Aligned_cols=56 Identities=45% Similarity=0.855 Sum_probs=52.6
Q ss_pred CCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 21 EEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 21 ~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
.+++++|+|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|+++
T Consensus 5 ~~~~~ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~li~~f~~~ 60 (74)
T 2d9u_A 5 SSGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKK 60 (74)
T ss_dssp CCCCCCCCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCCHHHHHHHHHH
T ss_pred cCCCccEEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCCHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999889999999875
No 16
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=99.86 E-value=9.8e-22 Score=111.26 Aligned_cols=57 Identities=40% Similarity=0.751 Sum_probs=53.0
Q ss_pred CCCCCccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 20 PEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 20 ~~~~~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
..+++++|+|++||++|..+|.++|||||+||+..+|||||.+||.|+++|.+|.++
T Consensus 7 ~~~~~~~y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~~~~li~~f~~~ 63 (74)
T 2kvm_A 7 SAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 63 (74)
T ss_dssp SSCCCCCCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCSCHHHHHHHHHH
T ss_pred ccCCCccEEEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCCCHHHHHHHHHH
Confidence 345778999999999999999999999999999999999999999999999999875
No 17
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=99.84 E-value=1.9e-22 Score=113.12 Aligned_cols=56 Identities=34% Similarity=0.805 Sum_probs=52.0
Q ss_pred CCCCccEEEEEEEeEEEEC-CeEE-EEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467 21 EEEGAEFSVETILDKRIVN-GKIE-YLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI 76 (77)
Q Consensus 21 ~~~~~~y~ve~Il~~r~~~-~~~~-ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~ 76 (77)
++++++|+|++||++|..+ |+++ |||||+||+..++||||.+|| +|+++|.+|+++
T Consensus 3 ~~~~~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~~~~~li~~f~~~ 61 (70)
T 1g6z_A 3 SPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR 61 (70)
T ss_dssp CCSSCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHH
T ss_pred cCCCceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHhhhHHHHHHHHHh
Confidence 4577899999999999988 8888 999999999999999999999 999999999875
No 18
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=107.69 Aligned_cols=50 Identities=36% Similarity=0.818 Sum_probs=47.6
Q ss_pred EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHhC
Q psy5467 28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHIV 77 (77)
Q Consensus 28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~~ 77 (77)
+|++||++|..+|.++|||||+||+..++||||++||.|+++|.+|++++
T Consensus 2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~c~~li~~f~~~~ 51 (64)
T 3mts_A 2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQFHKDL 51 (64)
T ss_dssp CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCCCHHHHHHHHHHH
T ss_pred CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999863
No 19
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=99.83 E-value=1.5e-21 Score=111.41 Aligned_cols=55 Identities=45% Similarity=0.955 Sum_probs=51.0
Q ss_pred CCCccEEEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467 22 EEGAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI 76 (77)
Q Consensus 22 ~~~~~y~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~ 76 (77)
+++++|+|++||++|. .+|+++|||||+||+..++|||+++|| +|+++|.+|+++
T Consensus 9 ~~~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~~~~li~~f~~~ 65 (78)
T 2dnt_A 9 ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRR 65 (78)
T ss_dssp CSSCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHHhHHHHHHHHHhh
Confidence 4678999999999998 578999999999999999999999999 899999999875
No 20
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=99.82 E-value=3e-22 Score=115.21 Aligned_cols=55 Identities=45% Similarity=0.976 Sum_probs=49.6
Q ss_pred CCCccEEEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHHHHh
Q psy5467 22 EEGAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANFIHI 76 (77)
Q Consensus 22 ~~~~~y~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y~~~ 76 (77)
..+++|+|++||++|. .+|+++|||||+||+..++||||++|| +|++||.+|.++
T Consensus 19 ~~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 75 (81)
T 4hae_A 19 ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGL 75 (81)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEEECCCCCCTTCSS
T ss_pred CCCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHHHH
Confidence 4567899999999998 468999999999999999999999999 799999998754
No 21
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=94.51 Aligned_cols=52 Identities=29% Similarity=0.560 Sum_probs=46.2
Q ss_pred CccEEEEEEEeEEEE----CC--eEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 24 GAEFSVETILDKRIV----NG--KIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~----~~--~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
.+.+.|++||++|.. +| .++|||||+|++..++|||++++| ++++|++|+++
T Consensus 9 pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l-~~~~I~~f~~r 66 (68)
T 2epb_A 9 PDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV-DPAKVKEFESL 66 (68)
T ss_dssp SSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS-CHHHHHHHHHH
T ss_pred CCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc-CHHHHHHHHHh
Confidence 456799999999964 35 899999999999999999999999 68999999876
No 22
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=99.64 E-value=5.5e-17 Score=89.50 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=44.7
Q ss_pred CccEEEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 24 GAEFSVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 24 ~~~y~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
.+.+.|++||++|. .+|.++|||||+|++.+++|||+++.. ..++.|++|+.+
T Consensus 9 pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~~ 64 (64)
T 2ee1_A 9 PEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWNH 64 (64)
T ss_dssp CSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHHC
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHhC
Confidence 36779999999998 578999999999999999999999932 445559999863
No 23
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=99.64 E-value=1.2e-18 Score=93.30 Aligned_cols=46 Identities=39% Similarity=0.849 Sum_probs=41.7
Q ss_pred EEEEEEeEEEEC-CeE-EEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 28 SVETILDKRIVN-GKI-EYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 28 ~ve~Il~~r~~~-~~~-~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
+|++||++|..+ |++ +|||||+|| +++||||++||. +++|.+|+++
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~nL~-~~li~~f~~~ 49 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVD-STLVLLYQQQ 49 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCSS-SSSHHHHTSS
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchHHCC-HHHHHHHHHH
Confidence 578999999987 888 999999999 689999999998 9999999764
No 24
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=99.50 E-value=6.7e-17 Score=97.88 Aligned_cols=54 Identities=37% Similarity=0.671 Sum_probs=46.7
Q ss_pred CCccEEEEEE------EeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcH-----HHHHHHHHh
Q psy5467 23 EGAEFSVETI------LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCP-----DLIANFIHI 76 (77)
Q Consensus 23 ~~~~y~ve~I------l~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~-----~ll~~y~~~ 76 (77)
....|+|++| ++.|..+|..+|||||+||+..+|||||.+||.|+ .+|.+|.++
T Consensus 33 ~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk 97 (115)
T 2b2y_C 33 TTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK 97 (115)
T ss_dssp GGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC-
T ss_pred CCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHH
Confidence 4568888886 88888889999999999999999999999999664 589999875
No 25
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.45 E-value=1.2e-14 Score=93.67 Aligned_cols=52 Identities=25% Similarity=0.558 Sum_probs=46.6
Q ss_pred ccEEEEEEEeEEE-----ECCeEEEEEEecCCCCCCCCcccCCCCC--cHHHHHHHHHh
Q psy5467 25 AEFSVETILDKRI-----VNGKIEYLLKWKGYSDDDNTWEPEENLD--CPDLIANFIHI 76 (77)
Q Consensus 25 ~~y~ve~Il~~r~-----~~~~~~ylVkW~G~~~~~~TWE~~~~l~--~~~ll~~y~~~ 76 (77)
+.+.|++||++|. ..+.++|||||+|++..++|||++.++. |+++|.+|.+|
T Consensus 119 e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~r 177 (177)
T 2h1e_A 119 EFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQKK 177 (177)
T ss_dssp HTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC-
T ss_pred ccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHhC
Confidence 4568999999997 5789999999999999999999999993 89999999865
No 26
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.42 E-value=4.2e-14 Score=91.74 Aligned_cols=51 Identities=20% Similarity=0.459 Sum_probs=46.7
Q ss_pred cE-EEEEEEeEEE---ECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 26 EF-SVETILDKRI---VNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 26 ~y-~ve~Il~~r~---~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
.| .|++||++|. ..|.++|||||+|++.+++|||++.++ .|+++|++|++|
T Consensus 129 e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 129 QYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 185 (187)
T ss_dssp HTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred hcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence 44 8999999998 478999999999999999999999998 589999999986
No 27
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=99.26 E-value=6.6e-13 Score=73.24 Aligned_cols=51 Identities=25% Similarity=0.574 Sum_probs=44.7
Q ss_pred cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
-+++++|++.+..+|.++|||||+|++..+..+....|..||++|.+|+++
T Consensus 12 Gle~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa~e~n~~~PqlVI~fYE~ 62 (65)
T 3kup_A 12 GLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEE 62 (65)
T ss_dssp CCCEEEEEEEECTTSSCEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHH
T ss_pred CCCeeEEeeEEcCCCcEEEEEEECCCChhheEEHHHHHhhChHHHHHHHHH
Confidence 468999999999999999999999998877666667777899999999864
No 28
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=99.18 E-value=1.5e-11 Score=69.25 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=45.2
Q ss_pred ccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 25 ~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
.-+++++|++.+..+|.++|||||+|++. .+|.+...+ .||++|.+|+++
T Consensus 14 rGl~~ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~ 65 (74)
T 2fmm_A 14 RGLEPERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEE 65 (74)
T ss_dssp GCCCEEEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHT
T ss_pred ccCCceEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHH
Confidence 35899999999999999999999999865 679999888 799999999975
No 29
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=99.18 E-value=9.3e-12 Score=72.07 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=47.2
Q ss_pred CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
+.-+++++|++....+|.++|||||+|.+..+..+..+.|..||++|.+|++.
T Consensus 23 ~RGle~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~ean~k~PqlVI~FYEe 75 (87)
T 3p7j_A 23 DRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEE 75 (87)
T ss_dssp TTTCCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHHHHHHCHHHHHHHHHH
T ss_pred cCCCCceEEeeEEccCCcEEEEEEECCCCccceEeHHHHhhhChHHHHHHHHH
Confidence 34579999999999999999999999999888888888888999999999764
No 30
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=99.17 E-value=2.5e-12 Score=72.69 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=41.1
Q ss_pred cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
-+++++|++....+|.++|||||+|.+..+..+..+.|..||++|.+|++.
T Consensus 22 Gle~EkIlg~t~~~Gel~fLVKWKg~~e~dlVpa~ean~k~PqlVI~FYEe 72 (75)
T 3i3c_A 22 GLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE 72 (75)
T ss_dssp CCCEEEEEEEEC---CCEEEEEETTSSCEEEEEHHHHHHHCHHHHHHHHTC
T ss_pred CCCeeEEeeEEccCCcEEEEEEECCCChhceEEHHHHhhhChHHHHHHHHH
Confidence 468999999999999999999999998766556666677899999999864
No 31
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.12 E-value=5.2e-12 Score=94.72 Aligned_cols=53 Identities=23% Similarity=0.491 Sum_probs=42.9
Q ss_pred CCccEEEEEEEeEEEE-------------------CCeEEEEEEecCCCCCCCCcccCCCCCcH---HHHHHHHH
Q psy5467 23 EGAEFSVETILDKRIV-------------------NGKIEYLLKWKGYSDDDNTWEPEENLDCP---DLIANFIH 75 (77)
Q Consensus 23 ~~~~y~ve~Il~~r~~-------------------~~~~~ylVkW~G~~~~~~TWE~~~~l~~~---~ll~~y~~ 75 (77)
++++|.|++||+||.+ +++.+|||||+||+..+||||++++|.+. .-+.+|.+
T Consensus 34 ~~~~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~~~~~~~~~~~~~k 108 (800)
T 3mwy_W 34 PEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCK 108 (800)
T ss_dssp --CCCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHCSCBTTHHHHHHHH
T ss_pred cCCCCchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHhhcchHHHHHHHHH
Confidence 5678999999999998 78899999999999999999999998421 23555544
No 32
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=99.12 E-value=6.8e-12 Score=71.37 Aligned_cols=51 Identities=25% Similarity=0.541 Sum_probs=43.7
Q ss_pred cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
-+++++|++.+..+|.++|||||+|++..+..+....|+.||++|.+|++.
T Consensus 9 Gle~EkI~g~~~~~Gel~fLvKWKg~~~~dlVpa~ean~k~PqlVI~FYE~ 59 (78)
T 3q6s_A 9 GLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEE 59 (78)
T ss_dssp CCCEEEEEEEECTTSSCEEEEEETTCSCEEEEEHHHHHHHSHHHHHHHHHT
T ss_pred CCCceEEeeEEcCCCcEEEEEEECCCChhheEeHHHHHhhChHHHHHHHHH
Confidence 468999999999999999999999998766555556666899999999874
No 33
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=99.06 E-value=5.4e-11 Score=76.51 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=43.3
Q ss_pred EEEEEEEeEEEECC-------------------eEEEEEEecCCCCCCCCcccCCCCC-cHHH--HHHHHHh
Q psy5467 27 FSVETILDKRIVNG-------------------KIEYLLKWKGYSDDDNTWEPEENLD-CPDL--IANFIHI 76 (77)
Q Consensus 27 y~ve~Il~~r~~~~-------------------~~~ylVkW~G~~~~~~TWE~~~~l~-~~~l--l~~y~~~ 76 (77)
-.|+.||+||...| ..+|||||+|++..+|||++..+|. |+.+ |.+|.++
T Consensus 13 ~~id~v~~hr~~~~~~~~~~~~~~~~~~~~~~~~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk 84 (177)
T 2h1e_A 13 HGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQ 84 (177)
T ss_dssp CCEEEEEEEEECTTSCGGGGCCSSCCCHHHHHHHEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHH
T ss_pred CcceeeecCCccccccccccccccCcccCCCCCceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHH
Confidence 36999999999642 3799999999999999999999995 8888 8888765
No 34
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=99.05 E-value=6.4e-12 Score=81.45 Aligned_cols=54 Identities=37% Similarity=0.660 Sum_probs=45.1
Q ss_pred CCccEEEEEE------EeEEEECCeEEEEEEecCCCCCCCCcccCCCCC-----cHHHHHHHHHh
Q psy5467 23 EGAEFSVETI------LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD-----CPDLIANFIHI 76 (77)
Q Consensus 23 ~~~~y~ve~I------l~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~-----~~~ll~~y~~~ 76 (77)
....|.|++| ++.|..+|..+|||||+|++..+|||++..+|. +..+|.+|.++
T Consensus 33 ~~~~y~VE~i~d~~~~ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk 97 (187)
T 2b2y_A 33 TTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK 97 (187)
T ss_dssp SSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHH
T ss_pred CceeEEeeccCCcccccCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHh
Confidence 4467888888 588878899999999999999999999999984 45789999875
No 35
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.23 E-value=3.3e-07 Score=50.67 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=36.7
Q ss_pred EEEEEEeEEE-ECCeEEEEEEecCCCCCCCCcccCC--CCCcHHHHHHHHHh
Q psy5467 28 SVETILDKRI-VNGKIEYLLKWKGYSDDDNTWEPEE--NLDCPDLIANFIHI 76 (77)
Q Consensus 28 ~ve~Il~~r~-~~~~~~ylVkW~G~~~~~~TWE~~~--~l~~~~ll~~y~~~ 76 (77)
.|++|++... ..|.+.||++|+|....+ .+.. |..||++|.+|++.
T Consensus 12 ~Ve~I~g~~~~~~g~L~flikwk~~~~~~---Vpa~~a~~kcPq~vI~FYE~ 60 (68)
T 1e0b_A 12 LVSSIDTIERKDDGTLEIYLTWKNGAISH---HPSTITNKKCPQKMLQFYES 60 (68)
T ss_dssp TEEEEEEEEECTTSCEEEEEEETTSCEEE---EEHHHHHHHSHHHHHHHHHT
T ss_pred heeEEEEEEECCCCEEEEEEEECCCCccc---eEHHHhHhhCCHHHHHHHHH
Confidence 5889999988 899999999999976432 4443 34799999999874
No 36
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.12 E-value=3e-07 Score=69.01 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=43.0
Q ss_pred cEEEEEEEeEEE-----ECCeEEEEEEecCCCCCCCCcccCCCC--CcHHHHHHHHHh
Q psy5467 26 EFSVETILDKRI-----VNGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANFIHI 76 (77)
Q Consensus 26 ~y~ve~Il~~r~-----~~~~~~ylVkW~G~~~~~~TWE~~~~l--~~~~ll~~y~~~ 76 (77)
...|++|++++. ..+..+|||||+|.+..++|||....+ .+++.+..|..+
T Consensus 145 ~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r 202 (800)
T 3mwy_W 145 FHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNR 202 (800)
T ss_dssp TTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHT
T ss_pred ccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHh
Confidence 346999999987 456789999999999999999998776 478888888764
No 37
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0037 Score=36.08 Aligned_cols=39 Identities=13% Similarity=0.336 Sum_probs=33.2
Q ss_pred cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
.+---+||..+..++..+|+|++.||...-+-|.+.+.|
T Consensus 37 ~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl 75 (92)
T 2ro0_A 37 EERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRI 75 (92)
T ss_dssp EEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGE
T ss_pred EEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHc
Confidence 344457888888888899999999999999999998887
No 38
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=96.59 E-value=0.0032 Score=35.07 Aligned_cols=39 Identities=18% Similarity=0.476 Sum_probs=33.1
Q ss_pred cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
.+---+|++.+..++..+|+|.+.||...-+-|.+.+.|
T Consensus 23 ~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri 61 (76)
T 2lcc_A 23 KIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRI 61 (76)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred CEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhc
Confidence 344456788888899999999999999999999998877
No 39
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=96.51 E-value=0.0028 Score=40.62 Aligned_cols=46 Identities=26% Similarity=0.527 Sum_probs=37.6
Q ss_pred EEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCCcHHHHHHHHHh
Q psy5467 28 SVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANFIHI 76 (77)
Q Consensus 28 ~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~~~~ll~~y~~~ 76 (77)
....++..+...+..+||++|..+ .+++|.+..++. +.++++|...
T Consensus 188 ~~~~~~~~~~~~~~~e~l~~~~~~--~~~~w~~~~~i~-~~li~~y~~~ 233 (244)
T 3ui2_A 188 EVDEIVEKRGKGKDVEYLVRWKDG--GDCEWVKGVHVA-EDVAKDYEDG 233 (244)
T ss_dssp EEEEEEEEESCTTSCEEEEEESSS--SCEEEEESTTBC-HHHHHHHHHH
T ss_pred cHHHHHHHhccCcchhhhhhhcCC--CCCCcCcchhcC-HHHHHHHHHH
Confidence 456788888888899999999876 458999999995 7888888764
No 40
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=94.91 E-value=0.0013 Score=37.48 Aligned_cols=36 Identities=22% Similarity=0.572 Sum_probs=30.8
Q ss_pred EEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 29 ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
--+||+.+..++...|+|++.||...-+-|.+.+.|
T Consensus 29 ~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl 64 (85)
T 2lrq_A 29 EAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRV 64 (85)
Confidence 346777777778899999999999998999999888
No 41
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=95.79 E-value=0.016 Score=34.01 Aligned_cols=39 Identities=15% Similarity=0.497 Sum_probs=33.6
Q ss_pred cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
.+---+||+.+..++...|+|.+.||...-+-|.+++.|
T Consensus 36 ~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl 74 (102)
T 2f5k_A 36 LLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRV 74 (102)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred EEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhc
Confidence 344457888888889999999999999998999999988
No 42
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.014 Score=33.85 Aligned_cols=40 Identities=13% Similarity=0.346 Sum_probs=34.1
Q ss_pred cEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD 65 (77)
Q Consensus 26 ~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~ 65 (77)
.+---+||..+..++..+|.|.+.||...-+-|.+.+.|+
T Consensus 39 ~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 39 EERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp CEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred EEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 4444678888888889999999999999999999999883
No 43
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.75 E-value=0.0068 Score=34.62 Aligned_cols=42 Identities=19% Similarity=0.483 Sum_probs=34.1
Q ss_pred CccEEEEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD 65 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~l~ 65 (77)
+..+---+||..+..++..+|+|++.||...-+-|.+.+.|.
T Consensus 26 ~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 26 EDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLD 67 (87)
T ss_dssp CEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBC
T ss_pred CCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcc
Confidence 334444567877777788999999999999999999999884
No 44
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=95.12 E-value=0.028 Score=32.42 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=31.7
Q ss_pred cEEEEEEEeEEEEC---CeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 26 EFSVETILDKRIVN---GKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 26 ~y~ve~Il~~r~~~---~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
.+---+||..|... +..+|+|++.||...-+-|.+.+.|
T Consensus 29 ~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL 70 (92)
T 2bud_A 29 TVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRI 70 (92)
T ss_dssp CEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred CEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHh
Confidence 44445677777654 6789999999999999999999988
No 45
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=94.75 E-value=0.11 Score=31.50 Aligned_cols=40 Identities=15% Similarity=0.530 Sum_probs=32.6
Q ss_pred cEEEEEEEeEEEE--CCeEEEEEEecCCCCCCCCcccCCCCC
Q psy5467 26 EFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENLD 65 (77)
Q Consensus 26 ~y~ve~Il~~r~~--~~~~~ylVkW~G~~~~~~TWE~~~~l~ 65 (77)
.+---+||..+.. .+..+|+|++.||...-+-|.+.+.|.
T Consensus 27 ~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 27 TWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred CEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence 4445577777764 578999999999999999999999883
No 46
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=93.82 E-value=0.049 Score=31.85 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=31.2
Q ss_pred CccEEEEEEEeEEEE-----CCeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 24 GAEFSVETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 24 ~~~y~ve~Il~~r~~-----~~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
...|+ -+|++.+.. .+...|+|...||...-+-|.+++.|
T Consensus 37 ~~lYe-AKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRi 81 (101)
T 3m9q_A 37 RVLYT-SKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVL 81 (101)
T ss_dssp CCEEE-EEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGE
T ss_pred CcceE-eEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHc
Confidence 44555 456666553 46789999999999988999999988
No 47
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=92.25 E-value=0.087 Score=31.26 Aligned_cols=39 Identities=23% Similarity=0.578 Sum_probs=29.9
Q ss_pred ccEEEEEEEeEEEEC---C--eEEEEEEecCCCCCCCCcccCCCC
Q psy5467 25 AEFSVETILDKRIVN---G--KIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 25 ~~y~ve~Il~~r~~~---~--~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
..|+ -+||+.+... | ...|+|.+.||...-+-|.+++.|
T Consensus 38 ~lYe-AKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rl 81 (110)
T 3m9p_A 38 VLYD-AKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp CEEE-EEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred Ccee-eEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhh
Confidence 4455 4566666642 2 489999999999988899999988
No 48
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=91.49 E-value=0.39 Score=27.12 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=18.0
Q ss_pred EEEEEecCCCCCCCCcccCC
Q psy5467 43 EYLLKWKGYSDDDNTWEPEE 62 (77)
Q Consensus 43 ~ylVkW~G~~~~~~TWE~~~ 62 (77)
+|+|++.||+...+-|...+
T Consensus 49 ~v~VHfdGW~~~yDeWv~~d 68 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWD 68 (88)
T ss_dssp EEEEEESSSTTTEEEEEETT
T ss_pred EEEEEECCCCCcccEEeeCC
Confidence 69999999999989998766
No 49
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=90.03 E-value=0.19 Score=29.73 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=28.8
Q ss_pred cEEEEEEEeEEEEC-----CeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 26 EFSVETILDKRIVN-----GKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 26 ~y~ve~Il~~r~~~-----~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
.|+. +||+..... +...|+|..+||...-+-|.+++.|
T Consensus 39 lYeA-KIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl 81 (110)
T 3oa6_A 39 LYDA-KIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV 81 (110)
T ss_dssp EEEE-EEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred cEEE-EEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh
Confidence 4543 566665422 2468999999999999999999988
No 50
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=76.04 E-value=0.96 Score=27.48 Aligned_cols=25 Identities=8% Similarity=0.438 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCCCCCCcccCCCC
Q psy5467 40 GKIEYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 40 ~~~~ylVkW~G~~~~~~TWE~~~~l 64 (77)
+...|+|++.||...-+-|.+++.|
T Consensus 73 ~~~~Y~VHY~GWn~~WDEWV~e~rv 97 (130)
T 3e9g_A 73 NGKCFFIHYQGWKSSWDEWVGYDRI 97 (130)
T ss_dssp TSCEEEEEETTSCGGGCEEEETTTE
T ss_pred cCceEEEEeCCCCCChhhccCHhhh
Confidence 3458999999999988899999998
No 51
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=58.05 E-value=2.4 Score=25.81 Aligned_cols=22 Identities=9% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEEecCCCCCCCCcccCCCC
Q psy5467 43 EYLLKWKGYSDDDNTWEPEENL 64 (77)
Q Consensus 43 ~ylVkW~G~~~~~~TWE~~~~l 64 (77)
.|+|+.+||...-+-|.+.+.|
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~dRi 99 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGYDRI 99 (136)
T ss_dssp EEEECCTTSCGGGCEEEETTTE
T ss_pred eEEEEeCCcCCcceeeecHhhh
Confidence 8999999999988899999988
No 52
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=47.59 E-value=29 Score=18.04 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=21.4
Q ss_pred EEEEEeEEEECCeEEEEEEecCCCCCCCCcccCCC
Q psy5467 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEEN 63 (77)
Q Consensus 29 ve~Il~~r~~~~~~~ylVkW~G~~~~~~TWE~~~~ 63 (77)
+-.|++-...+ .+++|+..||+...+-|-....
T Consensus 30 ~AtV~~v~~~~--~~~~VhfdGw~~~~D~W~~~dS 62 (69)
T 3sd4_A 30 PAHIEDIDYEE--GKVLIHFKRWNHRYDEWFCWDS 62 (69)
T ss_dssp EEEEEEEETTT--TEEEEEETTSCGGGCEEEETTC
T ss_pred ccEEEEEeccC--CEEEEEeCCCCCCCCEEEcCCC
Confidence 44454332223 3479999999987788876544
No 53
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=38.10 E-value=7.1 Score=21.86 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=15.8
Q ss_pred EEEeEEEECCeEEEEEEecC
Q psy5467 31 TILDKRIVNGKIEYLLKWKG 50 (77)
Q Consensus 31 ~Il~~r~~~~~~~ylVkW~G 50 (77)
.|+.-+...|..=|+|+|..
T Consensus 27 eIvEV~g~dG~PPY~VRw~d 46 (83)
T 2a7y_A 27 EIIEVRSADGSPPYVVRWLV 46 (83)
T ss_dssp EEEECSCSSSCSCEEEEETT
T ss_pred EEEEEECCCCCCCEEEEecC
Confidence 57777777888899999943
No 54
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=34.52 E-value=89 Score=23.20 Aligned_cols=51 Identities=37% Similarity=0.851 Sum_probs=36.5
Q ss_pred CCccEEEEEEEeEEE----ECCeEEEEEEecCCCCCCCCcccCCCC-CcHHHHHHH
Q psy5467 23 EGAEFSVETILDKRI----VNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73 (77)
Q Consensus 23 ~~~~y~ve~Il~~r~----~~~~~~ylVkW~G~~~~~~TWE~~~~l-~~~~ll~~y 73 (77)
....+..+++.+-.. ......+.+.|.++.....+|++...+ .+.+.+..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~ 364 (784)
T 4ft4_B 309 DKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364 (784)
T ss_dssp ---CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred ccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence 344566677766655 345789999999999999999999988 565555443
Done!