RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5467
(77 letters)
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1,
structural genomics, struct genomics consortium, SGC,
centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A*
2l11_A* 3dm1_A*
Length = 55
Score = 89.3 bits (222), Expect = 5e-26
Identities = 37/49 (75%), Positives = 44/49 (89%)
Query: 25 AEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E+ VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F
Sbjct: 1 GEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 49
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural
GENO structural genomics consortium, SGC, centromere,
nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Length = 59
Score = 88.5 bits (220), Expect = 1e-25
Identities = 32/50 (64%), Positives = 44/50 (88%)
Query: 24 GAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
G E+ VE +LD+R+V G++EYLLKWKG+S++ NTWEPE+NLDCP+LI+ F
Sbjct: 1 GEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEF 50
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin
regulator, nucleus, repressor, transcription,
transcription regulation; NMR {Homo sapiens} PDB:
2l12_A* 2l1b_A*
Length = 73
Score = 88.7 bits (220), Expect = 1e-25
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 10 TSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDL 69
+S E+ F+VE+I KR+ GK+EYL+KWKG+ +TWEPEE++ P L
Sbjct: 8 SSGRENLYFQGEQV---FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRL 64
Query: 70 IANF 73
+ +
Sbjct: 65 VMAY 68
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine
methylation, trimethyllysine, cation-PI, chromo,
structural protein; HET: M3L; 1.76A {Drosophila
melanogaster} SCOP: b.34.13.2
Length = 72
Score = 88.3 bits (219), Expect = 2e-25
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 9 PTSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPD 68
+ ++ E I+ KR+ G +EY +KWKG++ NTWEPE N+
Sbjct: 3 KHHHHHHDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRR 62
Query: 69 LIANF 73
LI +
Sbjct: 63 LIDIY 67
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin,
methyllysine, monomethyllysine, structural protein;
HET: MLZ; 1.64A {Drosophila melanogaster} SCOP:
b.34.13.2 PDB: 1kne_A* 1kna_A*
Length = 69
Score = 86.7 bits (215), Expect = 8e-25
Identities = 31/59 (52%), Positives = 40/59 (67%)
Query: 15 PAEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
EEE E++VE I+D+R+ G +EY LKWKGY + +NTWEPE NLDC DLI +
Sbjct: 5 HHHHHAEEEEEEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQY 63
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif,
alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB:
1guw_A*
Length = 73
Score = 86.7 bits (215), Expect = 8e-25
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E EEE E+ VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F
Sbjct: 4 EEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 60
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail,
choromatin organization modifier, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Length = 64
Score = 85.9 bits (213), Expect = 2e-24
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 19 APEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
+ F+ E +L +RI G++EYL+KWKG+S +TWEPEEN+ L+A F
Sbjct: 3 SGSSGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 57
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2,
structural genomics, structural genomics consortium,
SGC, chromatin regulator, D binding, nucleus; HET: M3L;
1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A
Length = 54
Score = 85.4 bits (212), Expect = 2e-24
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E IL KR+ GK+EYL+KW+G+S N+WEPEEN+ P L+ F
Sbjct: 3 VFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 50
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb,
chromodomain, peptide binding protein; HET: M3L; 1.40A
{Drosophila melanogaster} SCOP: b.34.13.2
Length = 55
Score = 84.7 bits (210), Expect = 3e-24
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
++ E I+ KR+ G +EY +KWKG++ NTWEPE N+ LI +
Sbjct: 3 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIY 50
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone
methyltransferase, histone-lysine N-methyltransferas
SUV39H1, histone H3, TRI-methylation; 2.20A {Homo
sapiens}
Length = 64
Score = 84.4 bits (209), Expect = 6e-24
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
VE + D + + + YL+KW+GY D ++TWEP +NL C ++ F
Sbjct: 3 VEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 47
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8,
structural genomics structural genomics consortium,
SGC, chromatin regulator, N phosphoprotein, repressor;
HET: M3L; 1.55A {Homo sapiens} PDB: 3gv6_A* 3i90_A*
Length = 54
Score = 83.2 bits (206), Expect = 1e-23
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E +L +RI G++EYL+KWKG+S +TWEPEEN+ L+A F
Sbjct: 3 VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 50
>2kvm_A Chromobox protein homolog 7; histone modification, lysine
methylation, chromobox, polycom chromatin-binding; HET:
MLY; NMR {Mus musculus}
Length = 74
Score = 83.7 bits (207), Expect = 1e-23
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E++ E F+VE+I KR+ GK+EYL+KWKG+ +TWEPEE++ P L+ +
Sbjct: 5 ELSAIGEQ-VFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAY 60
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 82.8 bits (205), Expect = 2e-23
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
F VE ILD + GK+ Y ++WKGY+ DD+TWEPE +L DC +++ F
Sbjct: 4 VFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEF 52
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2,
chromo domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 74
Score = 82.9 bits (205), Expect = 3e-23
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 20 PEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E IL KR+ GK+EYL+KW+G+S N+WEPEEN+ P L+ F
Sbjct: 4 GSSGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF 57
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3
tail, choromatin organization modifier, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Length = 78
Score = 80.2 bits (198), Expect = 4e-22
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 5/64 (7%)
Query: 12 STPPAEVAPEEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDL 69
S+ + +A EE + VE I+DKR GK EYL++WKGY +D+TWEPE++L +C +
Sbjct: 2 SSGSSGMASEEL---YEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEY 58
Query: 70 IANF 73
I +F
Sbjct: 59 IHDF 62
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 78.1 bits (193), Expect = 2e-21
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 21 EEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
E + + VE IL R+ NG EY +KW GY DNTWEPE+NL ++ +
Sbjct: 2 ETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKW 56
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP:
b.34.13.2
Length = 70
Score = 74.4 bits (183), Expect = 7e-20
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 20 PEEEGAEFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
+ E+ VE I+D+++ Y ++W YS +TWEP ENL C ++A +
Sbjct: 2 SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 58
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein
translocation, unknown function; NMR {Arabidopsis
thaliana} SCOP: b.34.13.2
Length = 54
Score = 50.0 bits (119), Expect = 2e-10
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 29 VETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E+++ KR+ IEYL+KW SD TWEP++N+D L+ +
Sbjct: 3 AESVIGKRVGDDGKTIEYLVKWTDMSDA--TWEPQDNVD-STLVLLY 46
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 42.2 bits (99), Expect = 3e-07
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 29 VETILDKRIV------NGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
V+ IL+ YL+KW +++TWE EE++D P + F
Sbjct: 14 VDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVD-PAKVKEF 63
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP-
dependent helicase CHD4, CHD-4, MI-2 autoantigen 218
kDa protein, MI2-beta; NMR {Homo sapiens}
Length = 64
Score = 41.4 bits (97), Expect = 6e-07
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 13 TPPAEVAPEEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEEN--LDCPDL 69
+ + PE + IL+ + G + YL+KW+ D +WE E+ D
Sbjct: 2 SSGSSGKPEW----MMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLF 57
Query: 70 IANF 73
++
Sbjct: 58 KQSY 61
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three
stranded antiparallel beta sheet, alpha helix linker,
peptide binding protein; 2.35A {Homo sapiens} SCOP:
b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Length = 115
Score = 40.1 bits (93), Expect = 5e-06
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
+K G+I+YL+KWKG+S NTWE EE L
Sbjct: 49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETL 80
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three
stranded antiparallel beta sheet, alpha helix linker,
peptide binding protein; 2.35A {Homo sapiens} SCOP:
b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Length = 187
Score = 40.7 bits (94), Expect = 5e-06
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPD 68
+K G+I+YL+KWKG+S NTWE EE L +
Sbjct: 46 NAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQN 84
Score = 36.9 bits (84), Expect = 1e-04
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 1 MSEETPAAPTSSTPPAEVAPEEEGAEFSVETILDKRIVN---GKIEYLLKWKGYSDDDNT 57
+ +P E+ + V I+ G +Y KW+G + +
Sbjct: 105 LKNASPEDVEYYNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECS 164
Query: 58 WEPEENL--DCPDLIANF 73
WE + I +
Sbjct: 165 WEDGALISKKFQACIDEY 182
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A
{Saccharomyces cerevisiae}
Length = 800
Score = 39.4 bits (92), Expect = 2e-05
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD 65
+ E + +T+ D E+L+KW S NTWE E++
Sbjct: 47 RLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG 95
Score = 33.6 bits (77), Expect = 0.003
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 29 VETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENLD--CPDLIANFIH 75
E I+D + +++YL+KW+ + D+ TWE ++ P+ + +F +
Sbjct: 148 PERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQN 201
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains,
three-stranded ANT B-sheet, hydrolase; 2.20A
{Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Length = 177
Score = 38.8 bits (89), Expect = 3e-05
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 20 PEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCP 67
E + +T+ D E+L+KW S NTWE E++
Sbjct: 25 TSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQV 72
Score = 38.4 bits (88), Expect = 4e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 17 EVAPEEEGAEFSVETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENL--DCPDL 69
E +E E I+D + +++YL+KW+ + D+ TWE ++ P+
Sbjct: 111 ERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQ 170
Query: 70 IANF 73
+ +F
Sbjct: 171 VKHF 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.002
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 22 EEGAEFSVETILDKRIVNGKIEYLLKWKGYSDD----DNTWEPEE----NLDCPDLI 70
++ S L + ++ LLK K Y + N + NL C L+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural
genomics consortium, SGC, acetylation, chromatin
regulator, nucleus, phosphoprotein; 1.77A {Homo
sapiens} PDB: 1dz1_A
Length = 65
Score = 30.5 bits (69), Expect = 0.010
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ F
Sbjct: 15 PERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAF 59
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain,
structural genomics, structural consortium, SGC,
centromere, nucleus, phosphoprotein; 2.48A {Homo
sapiens}
Length = 75
Score = 30.6 bits (69), Expect = 0.011
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ G + +L+KWK + D E N+ CP ++ F
Sbjct: 25 PEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAF 69
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain,
EMSY protein, heterochroma protein 1, transcription;
1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Length = 74
Score = 30.2 bits (68), Expect = 0.017
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ +F
Sbjct: 18 PERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 62
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc
epigenetics, transcription; 2.30A {Drosophila
melanogaster}
Length = 87
Score = 30.3 bits (68), Expect = 0.019
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 9 PTSSTPPAEVAPEEEGAEFS----VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
+ P F E IL NG++ +L+++KG + N
Sbjct: 4 HHHHHHEQDTIPVSGSTGFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANE 63
Query: 65 DCPDLIANF 73
P ++ +F
Sbjct: 64 KIPRMVIHF 72
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere,
cell cycle; 1.93A {Homo sapiens}
Length = 78
Score = 29.0 bits (65), Expect = 0.040
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ +F
Sbjct: 12 PERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 56
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics,
LID complex, transcription; NMR {Drosophila
melanogaster}
Length = 85
Score = 27.3 bits (60), Expect = 0.23
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 32 ILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
+L + +EY + + G+S + + W PE +
Sbjct: 32 VLKTKPDATPVEYYIHYAGWSKNWDEWVPENRV 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.33
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 12/45 (26%)
Query: 7 AAPTSSTPPAEVAPEEEGAE------FSVETI----LDKRI--VN 39
A P +S PP+ + E E S+ + + + N
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail,
chromatin organization modifier, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 87
Score = 26.9 bits (59), Expect = 0.35
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 32 ILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLI 70
IL + ++G+ + + + ++ + W E LD +
Sbjct: 34 ILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLDLKKIQ 72
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation;
2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 26.7 bits (58), Expect = 0.49
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 32 ILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
+ I + +++Y + + G++ + + W PE +
Sbjct: 42 CVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRV 74
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain,
RNA binding, activator, chromatin regulator,
transcription; NMR {Saccharomyces cerevisiae}
Length = 94
Score = 25.3 bits (55), Expect = 1.5
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 13/78 (16%)
Query: 1 MSEETPAAPTSSTPP-----AEVAPEEEGAEFSVE--------TILDKRIVNGKIEYLLK 47
M SS V + V+ IL ++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSVDDIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVH 60
Query: 48 WKGYSDDDNTWEPEENLD 65
+ Y+ + W + ++
Sbjct: 61 YVNYNKRLDEWITTDRIN 78
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel
domain, RBBP1, transcription; NMR {Homo sapiens}
Length = 76
Score = 23.8 bits (51), Expect = 4.8
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 31 TILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
+I I +G++ YL+ + G++ + W + +
Sbjct: 28 SIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRI 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.131 0.391
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,246,233
Number of extensions: 60071
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 41
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.4 bits)