RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5467
(77 letters)
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 79.0 bits (195), Expect = 2e-22
Identities = 28/48 (58%), Positives = 37/48 (77%)
Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E++VE I+D+R+ G +EY LKWKGY + +NTWEPE NLDC DLI +
Sbjct: 1 EYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQY 48
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 73
Score = 77.5 bits (191), Expect = 2e-21
Identities = 41/58 (70%), Positives = 48/58 (82%)
Query: 16 AEVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E EEE E+ VE +LD+R+V GK+EYLLKWKG+SD+DNTWEPEENLDCPDLIA F
Sbjct: 3 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 60
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 52
Score = 75.9 bits (187), Expect = 3e-21
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
F+ E +L +RI G++EYL+KWKG+S +TWEPEEN+ L+A F
Sbjct: 4 VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAF 51
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 55
Score = 74.4 bits (183), Expect = 1e-20
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 26 EFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
++ E I+ KR+ G +EY +KWKG++ NTWEPE N+ LI +
Sbjct: 3 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIY 50
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 69.4 bits (170), Expect = 2e-18
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 19 APEEEGAEFSVETILDKRIV--NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
+P++E E+ VE I+D+++ Y ++W YS +TWEP ENL C ++A +
Sbjct: 3 SPKQE--EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 58
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 69.0 bits (169), Expect = 3e-18
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 18 VAPEEEGAEFSVETILDKRIV-NGKIEYLLKWKGYSDDDNTWEPEENL-DCPDLIANF 73
+A EE + VE I+DKR GK EYL++WKGY +D+TWEPE++L +C + I +F
Sbjct: 1 MASEEL---YEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF 55
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 60.7 bits (147), Expect = 5e-15
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 21 EEEGAEFSVETILDKRIV-----NGKIEYLLKWKGYSDDDNTWEPEENL--DCPDLIANF 73
+E E I+D + +++YL+KW+ + D+ TWE ++ P+ + +F
Sbjct: 1 DEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHF 60
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 54
Score = 60.1 bits (146), Expect = 6e-15
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 29 VETILDKRIVN--GKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E+++ KR+ + IEYL+KW S D TWEP++N+D L+ +
Sbjct: 3 AESVIGKRVGDDGKTIEYLVKWTDMS--DATWEPQDNVD-STLVLLY 46
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 58.7 bits (142), Expect = 5e-14
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 17 EVAPEEEGAEFSVETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL-DCPDL--IANF 73
+ E + +T+ D E+L+KW S NTWE E++ L + N+
Sbjct: 15 RLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNY 74
Query: 74 I 74
Sbjct: 75 C 75
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 56.5 bits (136), Expect = 4e-13
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 33 LDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIA 71
+K G+I+YL+KWKG+S NTWE EE L ++
Sbjct: 37 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRG 75
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 55.6 bits (134), Expect = 7e-13
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 17 EVAPEEEGAEFSVETILDKRIV---NGKIEYLLKWKGYSDDDNTWEPEENLD--CPDLIA 71
E+ + V I+ G +Y KW+G + +WE + I
Sbjct: 14 ELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACID 73
Query: 72 NF 73
+
Sbjct: 74 EY 75
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 55
Score = 37.8 bits (88), Expect = 4e-06
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
V+ I++KR +EYL++WK D W ++ D+ ++
Sbjct: 8 VDEIVEKRGKGKDVEYLVRWK--DGGDCEWVKGVHV-AEDVAKDY 49
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1,
MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 37.6 bits (87), Expect = 8e-06
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 32 ILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENL 64
+ I + +++Y + + G++ + + W PE +
Sbjct: 25 CVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRV 57
>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1
{Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId:
10090]}
Length = 68
Score = 26.5 bits (59), Expect = 0.12
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 29 VETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLDCPDLIANF 73
E I+ +G++ +L+KWK + D E N+ CP ++ +F
Sbjct: 12 PERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISF 56
>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
IRBP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 302
Score = 25.4 bits (55), Expect = 0.66
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 2 SEETPAAPTSSTPPAEVAPEEEGAEFSVETILDKRIVNGKIEYL 45
+T P S + +E + V T+ I+ G I YL
Sbjct: 68 KTDTLVMPGDSIQAENIPEDEAMLQALVNTVFKVSILPGNIGYL 111
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 180
Score = 24.0 bits (52), Expect = 2.4
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 30 ETILDKRIVNGKIEYLLKWKGYSDDDNTWEPEENLD 65
ET+L+ ++ LKW + D WE LD
Sbjct: 2 ETLLNTKLETAD----LKWVTFPQVDGQWEELSGLD 33
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 133
Score = 22.6 bits (48), Expect = 7.0
Identities = 6/36 (16%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 32 ILDKRI--VNGKIEYLLKWKGYSDDDNTWEPEENLD 65
++ R+ G+ E+ + + G++ + W + L
Sbjct: 33 VIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA 68
>d1at3a_ b.57.1.1 (A:) HSV-2 protease {Herpes simplex virus type 2
[TaxId: 10310]}
Length = 231
Score = 22.4 bits (48), Expect = 9.1
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 51 YSDDDNTWEPEENLDCPDLIANFIH 75
+ TW P L++ ++
Sbjct: 179 LALAGRTWAPGVEALTHTLLSTAVN 203
>d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 125
Score = 22.0 bits (47), Expect = 9.5
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 13 TPPAEVAPEEEGAEFSVE 30
TP E+ + E
Sbjct: 21 TPAEGYTIEQAAGAVAAE 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.131 0.391
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 310,537
Number of extensions: 12488
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 24
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.0 bits)