BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy547
(282 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41824|YBOXH_APLCA Y-box factor homolog OS=Aplysia californica PE=2 SV=1
Length = 253
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 3 MCDSGTKAEATPSNPSANESP-KKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFV 61
M D+ + E + P ++ +KE ++A++V G VKWF+VKSGYGFI + EDVFV
Sbjct: 1 MADTEKQPEVEENQPDQEQNEEQKEKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFV 60
Query: 62 HSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAANKPKYN 121
H I NNPRK +++ +GE VEFD+++G+KG+EA NVTGP+G +VQGS++AA++ ++
Sbjct: 61 HQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYAADRRRFR 120
Query: 122 R 122
R
Sbjct: 121 R 121
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 170 MCDSGTKAEATPSNPSASESP-KKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFV 228
M D+ + E + P ++ +KE ++A++V G VKWF+VKSGYGFI + EDVFV
Sbjct: 1 MADTEKQPEVEENQPDQEQNEEQKEKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFV 60
Query: 229 HSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFV 267
H I NNPRK +++ +GE VEFD+++G+KGN+ V
Sbjct: 61 HQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANV 99
>sp|Q62764|DBPA_RAT DNA-binding protein A OS=Rattus norvegicus GN=Csda PE=2 SV=1
Length = 361
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 78/102 (76%), Gaps = 2/102 (1%)
Query: 15 SNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 74
S P+ +E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 75 YKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAAN 116
+++ +GETVEFD+++G+KG EA NVTGPDG V+GS++AA+
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Query: 182 SNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 241
S P+ SE +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 242 YKTLAEGETVEFDIMQGDKGNQFCFV 267
+++ +GETVEFD+++G+KG + V
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANV 149
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A OS=Mus musculus GN=Csda PE=1 SV=2
Length = 361
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 77/102 (75%), Gaps = 2/102 (1%)
Query: 15 SNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 74
S P+ E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGGEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 75 YKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAAN 116
+++ +GETVEFD+++G+KG EA NVTGPDG V+GS++AA+
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 165
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
Query: 182 SNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 241
S P+ E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGGEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 242 YKTLAEGETVEFDIMQGDKGNQFCFV 267
+++ +GETVEFD+++G+KG + V
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANV 149
>sp|P16989|DBPA_HUMAN DNA-binding protein A OS=Homo sapiens GN=CSDA PE=1 SV=4
Length = 372
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 70/88 (79%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGPDG V+GS++AA+
Sbjct: 146 VEGEKGAEAANVTGPDGVPVEGSRYAAD 173
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 54/72 (75%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145
Query: 256 MQGDKGNQFCFV 267
++G+KG + V
Sbjct: 146 VEGEKGAEAANV 157
>sp|P21573|YBOX1_XENLA Nuclease-sensitive element-binding protein 1 OS=Xenopus laevis
GN=ybx1 PE=2 SV=1
Length = 303
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 70/88 (79%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 32 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 91
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP+G VQGS++AA+
Sbjct: 92 VEGEKGAEAANVTGPEGVPVQGSKYAAD 119
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 32 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 91
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 92 VEGEKGAEAANVT 104
>sp|Q9Y2T7|YBOX2_HUMAN Y-box-binding protein 2 OS=Homo sapiens GN=YBX2 PE=1 SV=2
Length = 364
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 80/115 (69%), Gaps = 3/115 (2%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T TP+ P+ +++ K VLA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 71 TAVSGTPAPPARSQADKP---VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 127
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAANKPKYNR 122
NNPRK +++ +GETVEFD+++G+KG EA NVTGP G V+GS++A N+ K R
Sbjct: 128 RNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRR 182
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T TP+ P+ S++ K VLA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 71 TAVSGTPAPPARSQADKP---VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 127
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVL 268
NNPRK +++ +GETVEFD+++G+KG + V
Sbjct: 128 RNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVT 161
>sp|P62961|YBOX1_RAT Nuclease-sensitive element-binding protein 1 OS=Rattus norvegicus
GN=Ybx1 PE=1 SV=3
Length = 322
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 52 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 111
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP G VQGS++AA+
Sbjct: 112 VEGEKGAEAANVTGPGGVPVQGSKYAAD 139
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 52 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 111
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 112 VEGEKGAEAANVT 124
>sp|P62960|YBOX1_MOUSE Nuclease-sensitive element-binding protein 1 OS=Mus musculus
GN=Ybx1 PE=1 SV=3
Length = 322
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 52 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 111
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP G VQGS++AA+
Sbjct: 112 VEGEKGAEAANVTGPGGVPVQGSKYAAD 139
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 52 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 111
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 112 VEGEKGAEAANVT 124
>sp|P67809|YBOX1_HUMAN Nuclease-sensitive element-binding protein 1 OS=Homo sapiens
GN=YBX1 PE=1 SV=3
Length = 324
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP G VQGS++AA+
Sbjct: 114 VEGEKGAEAANVTGPGGVPVQGSKYAAD 141
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 114 VEGEKGAEAANVT 126
>sp|P67808|YBOX1_BOVIN Nuclease-sensitive element-binding protein 1 OS=Bos taurus GN=YBX1
PE=2 SV=3
Length = 324
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP G VQGS++AA+
Sbjct: 114 VEGEKGAEAANVTGPGGVPVQGSKYAAD 141
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 114 VEGEKGAEAANVT 126
>sp|Q28618|YBOX1_RABIT Nuclease-sensitive element-binding protein 1 OS=Oryctolagus
cuniculus GN=YBX1 PE=1 SV=3
Length = 324
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP G VQGS++AA+
Sbjct: 114 VEGEKGAEAANVTGPGGVPVQGSKYAAD 141
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 114 VEGEKGAEAANVT 126
>sp|Q06066|YBOX1_CHICK Nuclease-sensitive element-binding protein 1 OS=Gallus gallus
GN=YBX1 PE=2 SV=1
Length = 321
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 51 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 110
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP G VQGS++AA+
Sbjct: 111 VEGEKGAEAANVTGPGGVPVQGSKYAAD 138
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 51 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 110
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 111 VEGEKGAEAANVT 123
>sp|P45441|YBX2B_XENLA Y-box-binding protein 2-B OS=Xenopus laevis GN=ybx2-b PE=1 SV=2
Length = 324
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 68/88 (77%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
+LAT+V G VKWF+V++GYGFI S EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 37 LLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDV 96
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP G V+GS+FA N
Sbjct: 97 VEGEKGAEAANVTGPGGVPVKGSRFAPN 124
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
+LAT+V G VKWF+V++GYGFI S EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 37 LLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDV 96
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 97 VEGEKGAEAANVT 109
>sp|Q9Z2C8|YBOX2_MOUSE Y-box-binding protein 2 OS=Mus musculus GN=Ybx2 PE=1 SV=1
Length = 360
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 77/109 (70%), Gaps = 3/109 (2%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T A TP+ P+ +++ K VLA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTPAPPARSQADKP---VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAAN 116
NNPRK +++ +GETVEFD+++G+KG A NVTGP G V+GS++A N
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKGARAANVTGPGGVPVKGSRYAPN 178
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 3/93 (3%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T A TP+ P+ S++ K VLA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTPAPPARSQADKP---VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFV 267
NNPRK +++ +GETVEFD+++G+KG + V
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKGARAANV 162
>sp|Q00436|YB3_XENLA B box-binding protein OS=Xenopus laevis PE=2 SV=1
Length = 305
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 68/88 (77%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 32 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 91
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAAN 116
++G+KG EA NVTGP VQGS++AA+
Sbjct: 92 VEGEKGAEAANVTGPGPVPVQGSKYAAD 119
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 184 PSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 243
P+A+ KK V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +
Sbjct: 23 PAATVGEKK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLR 79
Query: 244 TLAEGETVEFDIMQGDKGNQFCFVL 268
++ +GETVEFD+++G+KG + V
Sbjct: 80 SVGDGETVEFDVVEGEKGAEAANVT 104
>sp|P21574|YBX2A_XENLA Y-box-binding protein 2-A OS=Xenopus laevis GN=ybx2-a PE=1 SV=3
Length = 336
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
VLAT+V G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 37 VLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDV 96
Query: 89 MQGDKGHEAINVTGPDGRHVQGS 111
++G+KG EA NVTGP G V+GS
Sbjct: 97 VEGEKGAEAANVTGPGGVPVKGS 119
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
VLAT+V G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 37 VLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDV 96
Query: 256 MQGDKGNQFCFVL 268
++G+KG + V
Sbjct: 97 VEGEKGAEAANVT 109
>sp|P27484|GRP2_NICSY Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1
Length = 214
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWFS + G+GFI ED+FVH I+ +++LAEGETVEF++ G G
Sbjct: 11 GTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEG----FRSLAEGETVEFEVESGGDGR 66
Query: 96 -EAINVTGPDGRHVQ 109
+A++VTGPDG VQ
Sbjct: 67 TKAVDVTGPDGAAVQ 81
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
G VKWFS + G+GFI ED+FVH I+ +++LAEGETVEF++ G G
Sbjct: 11 GTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEG----FRSLAEGETVEFEVESGGDG 65
>sp|Q45KJ5|LN28A_CHICK Protein lin-28 homolog A OS=Gallus gallus GN=LIN28A PE=2 SV=2
Length = 202
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 10 AEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFI-------ATPSSNEDVFVH 62
A A P + +SPK E G+ KWF+V+ G+GF+ A S DVFVH
Sbjct: 10 AGAKPGEEPSGDSPKAENESQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVH 69
Query: 63 SKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAANKPKYNR 122
++ +++L EGE VEF + KG E+I VTGP G GS+ +
Sbjct: 70 QSKLHMEG----FRSLKEGEAVEFTFKKSSKGLESIRVTGPGGVFCIGSERRPKSKSLQK 125
Query: 123 RKAKANK 129
R++K ++
Sbjct: 126 RRSKGDR 132
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 177 AEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFI-------ATPSSNEDVFVH 229
A A P + +SPK E G+ KWF+V+ G+GF+ A S DVFVH
Sbjct: 10 AGAKPGEEPSGDSPKAENESQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVH 69
Query: 230 SKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
++ +++L EGE VEF + KG
Sbjct: 70 QSKLHMEG----FRSLKEGEAVEFTFKKSSKG 97
>sp|P0A362|CSPB_YERPE Cold shock-like protein CspB OS=Yersinia pestis GN=cspB PE=3 SV=1
Length = 70
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G+VKWF G+GFI+ ++DVFVH I+ N+ YKTL EG+ VEF I
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIE 56
Query: 90 QGDKGHEAINVT 101
QG KG A+NV
Sbjct: 57 QGQKGPSAVNVV 68
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G+VKWF G+GFI+ ++DVFVH I+ N+ YKTL EG+ VEF I
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIE 56
Query: 257 QGDKG 261
QG KG
Sbjct: 57 QGQKG 61
>sp|P0A363|CSPB_YEREN Cold shock-like protein CspB OS=Yersinia enterocolitica GN=cspB
PE=3 SV=1
Length = 70
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G+VKWF G+GFI+ ++DVFVH I+ N+ YKTL EG+ VEF I
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIE 56
Query: 90 QGDKGHEAINVT 101
QG KG A+NV
Sbjct: 57 QGQKGPSAVNVV 68
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G+VKWF G+GFI+ ++DVFVH I+ N+ YKTL EG+ VEF I
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIE 56
Query: 257 QGDKG 261
QG KG
Sbjct: 57 QGQKG 61
>sp|P0A9Y9|CSPC_SALTY Cold shock-like protein CspC OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=cspC PE=3 SV=2
Length = 69
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 92 DKGHEAINVT 101
KG A+NVT
Sbjct: 58 QKGPAAVNVT 67
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 259 DKG 261
KG
Sbjct: 58 QKG 60
>sp|P0A9Z0|CSPC_SALTI Cold shock-like protein CspC OS=Salmonella typhi GN=cspC PE=3 SV=2
Length = 69
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 92 DKGHEAINVT 101
KG A+NVT
Sbjct: 58 QKGPAAVNVT 67
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 259 DKG 261
KG
Sbjct: 58 QKG 60
>sp|E0J500|CSPC_ECOLW Cold shock-like protein CspC OS=Escherichia coli (strain ATCC 9637
/ CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
GN=cspC PE=1 SV=1
Length = 69
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 92 DKGHEAINVT 101
KG A+NVT
Sbjct: 58 QKGPAAVNVT 67
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 259 DKG 261
KG
Sbjct: 58 QKG 60
>sp|P0A9Y6|CSPC_ECOLI Cold shock-like protein CspC OS=Escherichia coli (strain K12)
GN=cspC PE=1 SV=2
Length = 69
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 92 DKGHEAINVT 101
KG A+NVT
Sbjct: 58 QKGPAAVNVT 67
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 259 DKG 261
KG
Sbjct: 58 QKG 60
>sp|P0A9Y7|CSPC_ECOL6 Cold shock-like protein CspC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspC PE=3 SV=2
Length = 69
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 92 DKGHEAINVT 101
KG A+NVT
Sbjct: 58 QKGPAAVNVT 67
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 259 DKG 261
KG
Sbjct: 58 QKG 60
>sp|P0A9Y8|CSPC_ECO57 Cold shock-like protein CspC OS=Escherichia coli O157:H7 GN=cspC
PE=3 SV=2
Length = 69
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 92 DKGHEAINVT 101
KG A+NVT
Sbjct: 58 QKGPAAVNVT 67
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDG 57
Query: 259 DKG 261
KG
Sbjct: 58 QKG 60
>sp|Q83RI9|CSPC_SHIFL Cold shock-like protein CspC OS=Shigella flexneri GN=cspC PE=3 SV=3
Length = 69
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
K+ G VKWF+ G+GFI ++DVFVH I+ N KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----LKTLAEGQNVEFEIQDG 57
Query: 92 DKGHEAINVT 101
KG A+NVT
Sbjct: 58 QKGPAAVNVT 67
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
K+ G VKWF+ G+GFI ++DVFVH I+ N KTLAEG+ VEF+I G
Sbjct: 2 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----LKTLAEGQNVEFEIQDG 57
Query: 259 DKG 261
KG
Sbjct: 58 QKG 60
>sp|P63238|CSPE_BUCAP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cspE PE=3 SV=2
Length = 69
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG++VEF+I +G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITEG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG++VEF+I +G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITEG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|P63237|CSPE_BUCAI Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspE PE=3 SV=2
Length = 69
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG++VEF+I +G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITEG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG++VEF+I +G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLAEGQSVEFEITEG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|P0CL01|CSPJ_SALTY Cold shock-like protein CspJ OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=cspJ PE=3 SV=1
Length = 70
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
+ TK+ G+VKWF+ + G+GFI ++DVFVH I+ N ++TL E + VEF +
Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSVE 56
Query: 90 QGDKGHEAINV 100
QG KG A+NV
Sbjct: 57 QGPKGPSAVNV 67
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
+ TK+ G+VKWF+ + G+GFI ++DVFVH I+ N ++TL E + VEF +
Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSVE 56
Query: 257 QGDKG 261
QG KG
Sbjct: 57 QGPKG 61
>sp|E1WGN1|CSPJ_SALTS Cold shock-like protein CspJ OS=Salmonella typhimurium (strain
SL1344) GN=cspJ PE=2 SV=1
Length = 70
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
+ TK+ G+VKWF+ + G+GFI ++DVFVH I+ N ++TL E + VEF +
Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSVE 56
Query: 90 QGDKGHEAINV 100
QG KG A+NV
Sbjct: 57 QGPKGPSAVNV 67
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
+ TK+ G+VKWF+ + G+GFI ++DVFVH I+ N ++TL E + VEF +
Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSVE 56
Query: 257 QGDKG 261
QG KG
Sbjct: 57 QGPKG 61
>sp|Q9S170|CSPG_SHEVD Cold shock-like protein CspG OS=Shewanella violacea (strain JCM
10179 / CIP 106290 / LMG 19151 / DSS12) GN=cspG PE=2
SV=1
Length = 70
Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ G+VKWF+ + G+GFI + +DVFVH + I + +KTLAEG+ V F++
Sbjct: 1 MSNSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDG----FKTLAEGQKVSFEVE 56
Query: 90 QGDKGHEAINVTG 102
QG KG +A NV
Sbjct: 57 QGQKGLQAANVVA 69
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ G+VKWF+ + G+GFI + +DVFVH + I + +KTLAEG+ V F++
Sbjct: 1 MSNSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDG----FKTLAEGQKVSFEVE 56
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 57 QGQKGLQ 63
>sp|Q89A90|CSPE_BUCBP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=cspE PE=3 SV=3
Length = 69
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTL+EG++VEF+I +G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLSEGQSVEFEITEG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTL+EG++VEF+I +G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNG----FKTLSEGQSVEFEITEG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|P57407|CSPC_BUCAI Cold shock-like protein CspC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspC PE=3 SV=2
Length = 69
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 33 KVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 92
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTL EG+ VEF+I G
Sbjct: 3 KIKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNG----FKTLTEGQNVEFEIQDGQ 58
Query: 93 KGHEAINV 100
KG A+NV
Sbjct: 59 KGPAAVNV 66
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 200 KVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTL EG+ VEF+I G
Sbjct: 3 KIKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNG----FKTLTEGQNVEFEIQDGQ 58
Query: 260 KG 261
KG
Sbjct: 59 KG 60
>sp|Q38896|CSP4_ARATH Cold shock domain-containing protein 4 OS=Arabidopsis thaliana
GN=CSP4 PE=1 SV=1
Length = 201
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF + G+GFI +D+FVH I+ +++LA E+VEFD+ + G
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEG----FRSLAAEESVEFDVEVDNSGR 72
Query: 96 -EAINVTGPDGRHVQG 110
+AI V+GPDG VQG
Sbjct: 73 PKAIEVSGPDGAPVQG 88
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
G VKWF + G+GFI +D+FVH I+ +++LA E+VEFD+
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEG----FRSLAAEESVEFDV 65
>sp|Q8AVK2|LN28B_XENLA Protein lin-28 homolog B (Fragment) OS=Xenopus laevis GN=lin28b
PE=2 SV=1
Length = 252
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 28 VVLATKVCGVVKWFSVKSGYGFIA------TPSSNE-DVFVHSKRIKYNNPRKLYKTLAE 80
V+L + C KWF+V+ G+GFI+ +P N DVFVH ++ + +++L E
Sbjct: 30 VLLGSGHC---KWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDG----FRSLKE 82
Query: 81 GETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAANKPKYNRRKAKANK 129
GE VEF + KG E++ VTGP G GS+ +RK K ++
Sbjct: 83 GEPVEFTFKKSSKGFESLRVTGPGGNPCLGSERRPKAKTVQKRKPKGDR 131
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 195 VVLATKVCGVVKWFSVKSGYGFIA------TPSSNE-DVFVHSKRIKYNNPRKLYKTLAE 247
V+L + C KWF+V+ G+GFI+ +P N DVFVH ++ + +++L E
Sbjct: 30 VLLGSGHC---KWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDG----FRSLKE 82
Query: 248 GETVEFDIMQGDKG 261
GE VEF + KG
Sbjct: 83 GEPVEFTFKKSSKG 96
>sp|Q9KN00|CSPA_VIBCH Cold shock-like protein CspA OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=cspA PE=3 SV=1
Length = 70
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G VKWF+ G+GFI+ + +DVFVH K I +KTLAEG+ V F +
Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVE 56
Query: 90 QGDKGHEAINVT 101
QG KG +A VT
Sbjct: 57 QGKKGPQAAQVT 68
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G VKWF+ G+GFI+ + +DVFVH K I +KTLAEG+ V F +
Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVE 56
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 57 QGKKGPQ 63
>sp|P58726|CSPJ_SALTI Cold shock-like protein CspJ OS=Salmonella typhi GN=cspJ PE=3 SV=1
Length = 70
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
+ TK+ G+VKWF+ + G+GFI ++DVFVH I+ N ++TL E + VEF
Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSAE 56
Query: 90 QGDKGHEAINV 100
QG KG A+NV
Sbjct: 57 QGPKGPSAVNV 67
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
+ TK+ G+VKWF+ + G+GFI ++DVFVH I+ N ++TL E + VEF
Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSAE 56
Query: 257 QGDKG 261
QG KG
Sbjct: 57 QGPKG 61
>sp|P0A975|CSPE_SHIFL Cold shock-like protein CspE OS=Shigella flexneri GN=cspE PE=3 SV=2
Length = 69
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|E0J1Q3|CSPE_ECOLW Cold shock-like protein CspE OS=Escherichia coli (strain ATCC 9637
/ CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
GN=cspE PE=1 SV=1
Length = 69
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|P0A972|CSPE_ECOLI Cold shock-like protein CspE OS=Escherichia coli (strain K12)
GN=cspE PE=1 SV=2
Length = 69
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|P0A973|CSPE_ECOL6 Cold shock-like protein CspE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspE PE=3 SV=2
Length = 69
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|P0A974|CSPE_ECO57 Cold shock-like protein CspE OS=Escherichia coli O157:H7 GN=cspE
PE=3 SV=2
Length = 69
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>sp|Q9H9Z2|LN28A_HUMAN Protein lin-28 homolog A OS=Homo sapiens GN=LIN28A PE=1 SV=1
Length = 209
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 26 EPVVLATKVCGVVKWFSVKSGYGFIATPSSNE-------DVFVHSKRIKYNNPRKLYKTL 78
EP +L G+ KWF+V+ G+GF++ + DVFVH ++ +++L
Sbjct: 34 EPQLLHGA--GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSL 87
Query: 79 AEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAANKPKYNRRKAKANK 129
EGE VEF + KG E+I VTGP G GS+ +R++K ++
Sbjct: 88 KEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQKRRSKGDR 138
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 193 EPVVLATKVCGVVKWFSVKSGYGFIATPSSNE-------DVFVHSKRIKYNNPRKLYKTL 245
EP +L G+ KWF+V+ G+GF++ + DVFVH ++ +++L
Sbjct: 34 EPQLLHGA--GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSL 87
Query: 246 AEGETVEFDIMQGDKG 261
EGE VEF + KG
Sbjct: 88 KEGEAVEFTFKKSAKG 103
>sp|Q8K3Y3|LN28A_MOUSE Protein lin-28 homolog A OS=Mus musculus GN=Lin28a PE=1 SV=1
Length = 209
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 22/117 (18%)
Query: 26 EPVVLATKVCGVVKWFSVKSGYGFIATPSSNE-------DVFVHSKRIKYNNPRKLYKTL 78
EP +L G+ KWF+V+ G+GF++ + DVFVH ++ +++L
Sbjct: 34 EPQLLHGA--GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSL 87
Query: 79 AEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAANKPKYNRRKAKANKRKRKSR 135
EGE VEF + KG E+I VTGP G GS+ RR N +KR+S+
Sbjct: 88 KEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE---------RRPKGKNMQKRRSK 135
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 193 EPVVLATKVCGVVKWFSVKSGYGFIATPSSNE-------DVFVHSKRIKYNNPRKLYKTL 245
EP +L G+ KWF+V+ G+GF++ + DVFVH ++ +++L
Sbjct: 34 EPQLLHGA--GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG----FRSL 87
Query: 246 AEGETVEFDIMQGDKG 261
EGE VEF + KG
Sbjct: 88 KEGEAVEFTFKKSAKG 103
>sp|Q803L0|LN28A_DANRE Protein lin-28 homolog A OS=Danio rerio GN=lin28a PE=1 SV=1
Length = 202
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 15/102 (14%)
Query: 36 GVVKWFSVKSGYGFIATP-------SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
GV KWF+V+ G+GF++ S DVFVH ++ +++L EGE VEF
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQFAANKPK-YNRRKAKANK 129
+ KG E++ VTGP G GS+ KPK +R++K ++
Sbjct: 92 KRSSKGLESLQVTGPGGAPCVGSE---KKPKGTQKRRSKGDR 130
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 203 GVVKWFSVKSGYGFIATP-------SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
GV KWF+V+ G+GF++ S DVFVH ++ +++L EGE VEF
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 256 MQGDKG 261
+ KG
Sbjct: 92 KRSSKG 97
>sp|Q4L6A7|CSPA_STAHJ Cold shock protein CspA OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=cspA PE=3 SV=1
Length = 66
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI N DVFVH I + YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAINQDG----YKSLEEGQSVEFEVVEGDRGP 58
Query: 96 EAINVT 101
+A NV
Sbjct: 59 QAANVV 64
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI N DVFVH I + YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAINQDG----YKSLEEGQSVEFEVVEGDRGP 58
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 59 QAANVVK 65
>sp|Q49XK3|CSPA_STAS1 Cold shock protein CspA OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=cspA
PE=3 SV=1
Length = 66
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI N DVFVH I ++ YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAIN----QEGYKSLEEGQSVEFEVVEGDRGP 58
Query: 96 EAINVT 101
+A NV
Sbjct: 59 QAANVV 64
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI N DVFVH I ++ YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAIN----QEGYKSLEEGQSVEFEVVEGDRGP 58
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 59 QAANVVK 65
>sp|Q8CP90|CSPA_STAES Cold shock protein CspA OS=Staphylococcus epidermidis (strain ATCC
12228) GN=cspA PE=3 SV=1
Length = 66
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI N DVFVH I ++ YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAIN----QEGYKSLEEGQSVEFEVVEGDRGP 58
Query: 96 EAINVT 101
+A NV
Sbjct: 59 QAANVV 64
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI N DVFVH I ++ YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAIN----QEGYKSLEEGQSVEFEVVEGDRGP 58
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 59 QAANVVK 65
>sp|Q5HPE0|CSPA_STAEQ Cold shock protein CspA OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=cspA PE=3 SV=2
Length = 66
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI N DVFVH I ++ YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAIN----QEGYKSLEEGQSVEFEVVEGDRGP 58
Query: 96 EAINVT 101
+A NV
Sbjct: 59 QAANVV 64
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI N DVFVH I ++ YK+L EG++VEF++++GD+G
Sbjct: 4 GTVKWFNAEKGFGFIEVEGEN-DVFVHFSAIN----QEGYKSLEEGQSVEFEVVEGDRGP 58
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 59 QAANVVK 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,097,198
Number of Sequences: 539616
Number of extensions: 4482133
Number of successful extensions: 12798
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 12205
Number of HSP's gapped (non-prelim): 365
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)