Query psy547
Match_columns 282
No_of_seqs 266 out of 2302
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:22:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h95_A CSD, Y-box binding prot 99.9 4.6E-24 1.6E-28 160.3 8.6 76 28-103 3-78 (79)
2 3ulj_A LIN28B, DNA-binding pro 99.9 4.4E-24 1.5E-28 163.9 7.1 77 31-111 6-89 (90)
3 3i2z_B RNA chaperone, negative 99.9 7.3E-23 2.5E-27 150.7 9.0 69 31-103 3-71 (71)
4 3cam_A Cold-shock domain famil 99.9 7.2E-23 2.5E-27 149.1 8.8 65 34-102 2-66 (67)
5 1h95_A CSD, Y-box binding prot 99.9 1.8E-22 6.1E-27 151.6 8.6 73 196-268 4-76 (79)
6 3a0j_A Cold shock protein; OB- 99.9 3.9E-22 1.3E-26 147.6 9.2 67 34-105 2-70 (73)
7 1c9o_A CSPB, cold-shock protei 99.9 2.4E-22 8.1E-27 145.9 7.9 64 34-102 2-65 (66)
8 3cam_A Cold-shock domain famil 99.9 8.7E-22 3E-26 143.4 9.4 65 201-269 2-66 (67)
9 2kcm_A Cold shock domain famil 99.9 4.8E-22 1.6E-26 147.3 7.8 67 34-105 1-68 (74)
10 2k5n_A Putative cold-shock pro 99.9 1.4E-21 4.8E-26 144.9 8.9 67 32-105 1-67 (74)
11 1g6p_A Cold shock protein TMCS 99.9 6.3E-22 2.2E-26 143.7 6.9 65 34-103 1-65 (66)
12 3i2z_B RNA chaperone, negative 99.9 2.4E-21 8.1E-26 142.6 9.6 67 199-269 4-70 (71)
13 2lss_A Cold shock-like protein 99.8 4E-23 1.4E-27 151.7 0.0 69 30-102 1-69 (70)
14 1c9o_A CSPB, cold-shock protei 99.8 4.5E-21 1.5E-25 139.2 8.7 64 201-269 2-65 (66)
15 3ulj_A LIN28B, DNA-binding pro 99.8 2.8E-21 9.7E-26 148.2 7.4 66 199-268 7-79 (90)
16 3a0j_A Cold shock protein; OB- 99.8 1.6E-20 5.6E-25 138.8 9.9 64 201-269 2-67 (73)
17 3ts2_A Protein LIN-28 homolog 99.8 7.9E-21 2.7E-25 158.7 8.1 80 31-114 7-93 (148)
18 1wfq_A UNR protein; beta-barre 99.8 1.5E-20 5.1E-25 144.1 9.0 69 30-105 15-85 (89)
19 1g6p_A Cold shock protein TMCS 99.8 1.3E-20 4.4E-25 136.8 7.4 64 201-269 1-64 (66)
20 2lss_A Cold shock-like protein 99.7 6.9E-22 2.4E-26 145.1 0.0 68 198-269 2-69 (70)
21 2kcm_A Cold shock domain famil 99.8 1.6E-20 5.5E-25 139.1 7.2 64 201-269 1-65 (74)
22 2k5n_A Putative cold-shock pro 99.8 6.4E-20 2.2E-24 135.9 9.0 63 200-269 2-64 (74)
23 3aqq_A Calcium-regulated heat 99.8 2.7E-19 9.2E-24 148.6 9.1 69 31-105 60-131 (147)
24 2yty_A Cold shock domain-conta 99.8 9.2E-20 3.1E-24 139.4 5.3 68 31-105 16-84 (88)
25 2ytx_A Cold shock domain-conta 99.8 1E-18 3.6E-23 135.9 10.6 70 31-107 16-85 (97)
26 1wfq_A UNR protein; beta-barre 99.8 6.4E-19 2.2E-23 135.0 8.5 64 199-269 17-82 (89)
27 1x65_A UNR protein; cell-free 99.7 2.9E-19 1E-23 136.8 3.0 68 31-106 6-76 (89)
28 3ts2_A Protein LIN-28 homolog 99.7 1.6E-18 5.5E-23 144.7 7.4 67 199-269 8-81 (148)
29 2yty_A Cold shock domain-conta 99.7 2.2E-18 7.6E-23 131.8 6.2 64 199-269 17-81 (88)
30 3aqq_A Calcium-regulated heat 99.7 7.3E-18 2.5E-22 140.0 9.7 65 199-269 61-128 (147)
31 2ytx_A Cold shock domain-conta 99.7 1.2E-17 4E-22 130.0 7.0 65 199-270 17-81 (97)
32 1x65_A UNR protein; cell-free 99.7 2.7E-18 9.3E-23 131.4 3.4 68 199-274 7-77 (89)
33 2ytv_A Cold shock domain-conta 99.7 7.5E-18 2.5E-22 126.3 5.1 66 31-104 6-74 (79)
34 2ytv_A Cold shock domain-conta 99.7 9.5E-17 3.3E-21 120.3 6.1 64 199-270 7-73 (79)
35 2bh8_A 1B11; transcription, mo 99.6 4.8E-15 1.6E-19 115.9 7.5 58 31-92 14-73 (101)
36 2bh8_A 1B11; transcription, mo 99.5 6E-14 2E-18 109.7 7.9 60 198-261 14-76 (101)
37 2id0_A Exoribonuclease 2; RNAs 97.4 0.0022 7.5E-08 64.5 14.1 47 33-91 21-67 (644)
38 3go5_A Multidomain protein wit 97.0 0.0075 2.6E-07 54.8 12.6 62 31-99 70-133 (285)
39 3go5_A Multidomain protein wit 96.3 0.13 4.4E-06 46.6 15.2 56 201-262 73-129 (285)
40 1a62_A RHO; transcription term 96.0 0.014 4.9E-07 47.0 6.4 52 201-261 51-107 (130)
41 1a62_A RHO; transcription term 95.9 0.019 6.4E-07 46.2 6.9 64 33-105 50-121 (130)
42 2id0_A Exoribonuclease 2; RNAs 91.5 0.24 8.3E-06 49.6 6.2 47 200-258 21-67 (644)
43 2cqo_A Nucleolar protein of 40 91.4 0.86 3E-05 35.6 8.1 60 29-91 21-81 (119)
44 2cqo_A Nucleolar protein of 40 90.4 0.49 1.7E-05 37.0 5.8 57 199-258 24-81 (119)
45 2bx2_L Ribonuclease E, RNAse E 88.7 2 6.9E-05 41.9 9.8 81 199-280 47-139 (517)
46 2k52_A Uncharacterized protein 86.9 1.3 4.5E-05 31.7 5.7 53 199-258 7-59 (80)
47 2k4k_A GSP13, general stress p 85.8 1.6 5.5E-05 34.5 6.1 57 199-258 9-65 (130)
48 2khi_A 30S ribosomal protein S 85.4 3.4 0.00012 31.7 7.7 58 199-259 32-90 (115)
49 2k52_A Uncharacterized protein 84.8 1.7 5.6E-05 31.2 5.3 51 32-90 7-58 (80)
50 2eqs_A ATP-dependent RNA helic 83.5 2.1 7.2E-05 32.3 5.6 60 199-261 14-77 (103)
51 2k4k_A GSP13, general stress p 81.6 3 0.0001 32.9 6.0 58 31-91 8-65 (130)
52 2khj_A 30S ribosomal protein S 81.4 2.9 9.9E-05 31.7 5.7 58 199-259 33-90 (109)
53 2khi_A 30S ribosomal protein S 78.4 7.9 0.00027 29.6 7.4 59 30-91 30-89 (115)
54 1q8k_A Eukaryotic translation 77.6 6 0.0002 36.0 7.4 69 31-102 14-86 (308)
55 2eqs_A ATP-dependent RNA helic 77.2 5.9 0.0002 29.7 6.2 61 31-94 13-77 (103)
56 1kl9_A Eukaryotic translation 74.7 5.5 0.00019 33.4 6.0 67 31-100 16-86 (182)
57 2khj_A 30S ribosomal protein S 74.7 4.6 0.00016 30.5 5.1 59 30-91 31-89 (109)
58 3l0o_A Transcription terminati 74.6 3.5 0.00012 39.2 5.1 52 201-261 58-114 (427)
59 2a19_A EIF-2- alpha, eukaryoti 74.4 6.2 0.00021 32.8 6.2 58 199-259 17-76 (175)
60 1kl9_A Eukaryotic translation 74.4 6.4 0.00022 33.0 6.3 58 199-259 17-76 (182)
61 1luz_A Protein K3, protein K2; 73.7 1.4 4.7E-05 32.5 1.8 56 199-259 13-71 (88)
62 3aev_A Translation initiation 73.6 9.5 0.00033 34.0 7.6 68 31-101 12-83 (275)
63 2b8k_G B16, DNA-directed RNA p 72.7 9.6 0.00033 32.7 7.1 57 199-259 85-151 (215)
64 1q8k_A Eukaryotic translation 72.3 10 0.00034 34.5 7.5 58 199-259 15-74 (308)
65 1y14_B B16, RPB7, DNA-directed 72.2 6.6 0.00023 32.2 5.8 57 199-259 85-151 (171)
66 2bx2_L Ribonuclease E, RNAse E 72.1 16 0.00054 35.6 9.2 70 31-101 46-124 (517)
67 3ice_A Transcription terminati 71.5 3.4 0.00012 39.2 4.3 54 201-263 54-112 (422)
68 3l0o_A Transcription terminati 69.3 5.3 0.00018 38.0 5.0 64 33-105 57-128 (427)
69 2vnu_D Exosome complex exonucl 69.1 5.3 0.00018 40.7 5.4 48 33-91 32-82 (760)
70 1y14_B B16, RPB7, DNA-directed 68.4 7.6 0.00026 31.8 5.4 56 31-90 84-149 (171)
71 2b8k_G B16, DNA-directed RNA p 67.0 9.8 0.00033 32.7 5.9 56 31-90 84-149 (215)
72 3aev_A Translation initiation 66.7 15 0.00051 32.7 7.3 58 199-259 13-72 (275)
73 1wi5_A RRP5 protein homolog; S 66.0 41 0.0014 25.5 11.0 60 28-93 19-83 (119)
74 2qcp_X Cation efflux system pr 64.1 6.6 0.00023 28.4 3.7 61 33-101 9-77 (80)
75 2a19_A EIF-2- alpha, eukaryoti 63.9 13 0.00044 30.8 5.9 66 31-99 16-85 (175)
76 1go3_E DNA-directed RNA polyme 63.5 16 0.00056 30.0 6.6 57 199-259 83-150 (187)
77 2qcp_X Cation efflux system pr 63.0 7.8 0.00027 28.0 3.9 60 201-268 10-77 (80)
78 2vb2_X Copper protein, cation 62.9 7 0.00024 28.8 3.7 62 32-101 16-85 (88)
79 2vb2_X Copper protein, cation 62.5 7.9 0.00027 28.5 3.9 61 200-268 17-85 (88)
80 3m7n_A Putative uncharacterize 62.0 20 0.00067 29.6 6.8 75 199-279 59-144 (179)
81 2l55_A SILB,silver efflux prot 61.8 8.8 0.0003 27.9 4.0 59 34-102 6-73 (82)
82 4ayb_E DNA-directed RNA polyme 61.5 27 0.00091 28.6 7.5 57 199-259 83-150 (180)
83 2vnu_D Exosome complex exonucl 58.5 11 0.00037 38.4 5.3 46 201-257 33-81 (760)
84 2wp8_J Exosome complex exonucl 57.9 11 0.00039 39.4 5.5 48 32-90 248-298 (977)
85 2c35_B Human RPB7, DNA-directe 57.4 12 0.00041 30.5 4.6 57 199-259 83-151 (172)
86 3ice_A Transcription terminati 57.1 6.2 0.00021 37.5 3.0 53 33-94 53-110 (422)
87 2l55_A SILB,silver efflux prot 54.6 14 0.00048 26.8 4.0 27 242-268 45-72 (82)
88 3h0g_G DNA-directed RNA polyme 52.3 13 0.00044 30.5 3.9 56 199-259 86-152 (172)
89 3cw2_C Translation initiation 49.0 7.7 0.00026 34.4 2.2 58 199-259 13-72 (266)
90 2c35_B Human RPB7, DNA-directe 48.4 18 0.0006 29.5 4.2 56 31-90 82-149 (172)
91 1go3_E DNA-directed RNA polyme 47.4 37 0.0013 27.8 6.1 56 31-90 82-148 (187)
92 4ayb_E DNA-directed RNA polyme 45.9 52 0.0018 26.8 6.7 56 31-90 82-148 (180)
93 3h0g_G DNA-directed RNA polyme 44.7 14 0.00049 30.2 3.1 55 32-90 86-150 (172)
94 2wp8_J Exosome complex exonucl 44.4 25 0.00085 36.9 5.4 46 201-257 250-298 (977)
95 4hti_A Receptor-type tyrosine- 43.9 7.3 0.00025 29.6 1.0 26 247-272 50-75 (99)
96 1wi5_A RRP5 protein homolog; S 40.5 1.1E+02 0.0039 22.9 8.3 55 199-259 23-82 (119)
97 2je6_I RRP4, exosome complex R 38.7 79 0.0027 27.5 7.1 59 199-260 76-137 (251)
98 3cw2_C Translation initiation 38.5 15 0.0005 32.6 2.3 69 30-101 11-83 (266)
99 2je6_I RRP4, exosome complex R 37.1 62 0.0021 28.2 6.2 60 31-93 75-137 (251)
100 2ba0_A Archeal exosome RNA bin 34.0 1.4E+02 0.0046 25.5 7.8 59 199-260 59-118 (229)
101 3psi_A Transcription elongatio 33.6 76 0.0026 34.1 7.1 58 199-259 904-962 (1219)
102 3m7n_A Putative uncharacterize 32.4 76 0.0026 26.0 5.7 58 31-90 58-124 (179)
103 1hh2_P NUSA, N utilization sub 32.0 90 0.0031 28.6 6.5 50 32-91 136-185 (344)
104 3tuf_B Stage II sporulation pr 27.8 56 0.0019 28.5 4.2 34 201-234 100-136 (245)
105 2z0s_A Probable exosome comple 27.1 1.6E+02 0.0055 25.1 7.0 59 199-260 68-130 (235)
106 2ja9_A Exosome complex exonucl 26.6 2E+02 0.0067 23.5 7.2 59 31-93 8-67 (175)
107 3bzc_A TEX; helix-turn-helix, 26.5 29 0.00099 35.5 2.4 57 199-258 656-712 (785)
108 3cdi_A Polynucleotide phosphor 26.0 14 0.00049 37.4 0.0 58 199-259 629-686 (723)
109 2ylb_A Protein HFQ; RNA-bindin 25.4 33 0.0011 24.5 1.9 32 31-67 31-62 (74)
110 2gu1_A Zinc peptidase; alpha/b 25.2 61 0.0021 29.6 4.2 34 201-234 249-285 (361)
111 2ba0_A Archeal exosome RNA bin 24.3 2.3E+02 0.0078 24.1 7.5 61 30-93 57-118 (229)
112 3psi_A Transcription elongatio 24.3 1.2E+02 0.004 32.7 6.6 59 30-91 902-961 (1219)
113 1kq1_A HFQ, HOST factor for Q 23.1 39 0.0013 24.3 1.9 13 31-43 29-41 (77)
114 1j6q_A Cytochrome C maturation 23.0 2.1E+02 0.0073 22.5 6.5 60 202-268 43-103 (136)
115 4aid_A Polyribonucleotide nucl 22.8 18 0.00061 36.7 0.0 58 199-259 639-696 (726)
116 1j6q_A Cytochrome C maturation 21.4 3E+02 0.01 21.6 8.8 62 34-102 42-104 (136)
117 1hh2_P NUSA, N utilization sub 21.0 2.4E+02 0.0081 25.8 7.2 51 199-259 136-186 (344)
118 2z0s_A Probable exosome comple 20.8 2.2E+02 0.0075 24.2 6.7 62 29-93 65-130 (235)
119 2ja9_A Exosome complex exonucl 20.8 2.9E+02 0.0098 22.5 7.1 56 201-260 11-67 (175)
120 3sb2_A Protein HFQ; SM-like, R 20.8 46 0.0016 24.0 1.9 13 31-43 30-42 (79)
121 3nyy_A Putative glycyl-glycine 20.4 1.1E+02 0.0039 26.5 4.7 33 201-233 146-181 (252)
122 3d2w_A TAR DNA-binding protein 20.1 57 0.0019 23.0 2.3 11 44-54 47-57 (89)
No 1
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.90 E-value=4.6e-24 Score=160.31 Aligned_cols=76 Identities=61% Similarity=1.054 Sum_probs=70.5
Q ss_pred ceeeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCC
Q psy547 28 VVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGP 103 (282)
Q Consensus 28 ~~~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~ 103 (282)
+++.++.+|+|||||..||||||+++++++|||||+|+|...++++|+++|.+|++|+|++..+++|++|++|+.+
T Consensus 3 ~~~~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~p 78 (79)
T 1h95_A 3 KVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP 78 (79)
T ss_dssp SCCEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSSEEEESBCCC
T ss_pred cccccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCCceeEEEECc
Confidence 4567788999999999999999999998999999999999887777899999999999999999999999999865
No 2
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=99.90 E-value=4.4e-24 Score=163.88 Aligned_cols=77 Identities=39% Similarity=0.762 Sum_probs=70.2
Q ss_pred eeeeeeEEEEeeCCCceEEEe-------CCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIA-------TPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGP 103 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~-------~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~ 103 (282)
.++.+|+|||||..||||||+ ++++++|||||+|+|... |+++|.+|+.|+|++..+++|++|++|+.+
T Consensus 6 ~~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~----g~~~L~eG~~V~f~v~~g~kG~~A~~Vtg~ 81 (90)
T 3ulj_A 6 VLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYME----GFRSLKEGEPVEFTFKKSSKGFESLRVTGP 81 (90)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCS----SSCCCCTTCEEEEEEEEETTEEEEEEEECG
T ss_pred ccccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhccc----CCCccCCCCEEEEEEEECCCCcEEEEEECC
Confidence 467899999999999999997 456778999999999987 699999999999999999999999999999
Q ss_pred CCCccccc
Q psy547 104 DGRHVQGS 111 (282)
Q Consensus 104 ~~~~~~~~ 111 (282)
++.|+.++
T Consensus 82 ~G~p~~gs 89 (90)
T 3ulj_A 82 GGNPCLGN 89 (90)
T ss_dssp GGCCCCCC
T ss_pred CCccccCC
Confidence 98887665
No 3
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=99.88 E-value=7.3e-23 Score=150.71 Aligned_cols=69 Identities=49% Similarity=0.806 Sum_probs=63.3
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGP 103 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~ 103 (282)
+++.+|+|||||..||||||+++++++|||||+|+|... |++.|.+|++|+|++..+++|++|.+|+.+
T Consensus 3 m~~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~~ 71 (71)
T 3i2z_B 3 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITNGAKGPSAANVTAL 71 (71)
T ss_dssp --CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS----SCCCCCTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred cccccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc----cCcCCCCCCEEEEEEEECCCCCEeEEEEeC
Confidence 457899999999999999999999889999999999976 588999999999999999999999999853
No 4
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=99.88 E-value=7.2e-23 Score=149.10 Aligned_cols=65 Identities=42% Similarity=0.805 Sum_probs=61.7
Q ss_pred eeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeC
Q psy547 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTG 102 (282)
Q Consensus 34 ~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~ 102 (282)
.+|+|||||.+||||||+++++++|||||+|+|... |+++|.+|++|+|++..+++|++|.+|+.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 66 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINME----GFKTLKEGQRVSFDVTTGPKGKQAANIQA 66 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGG----GGSSCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHcccc----CCCCCCCCCEEEEEEEECCCCccceEEEe
Confidence 589999999999999999999899999999999876 68999999999999999999999999974
No 5
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.87 E-value=1.8e-22 Score=151.60 Aligned_cols=73 Identities=55% Similarity=0.970 Sum_probs=67.3
Q ss_pred eeeeeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeE
Q psy547 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVL 268 (282)
Q Consensus 196 ~~~~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~ 268 (282)
++..+.+|+|||||..||||||+++++++|||||+|+|...+++.|++.|.+||+|+|++.++++|++|++|+
T Consensus 4 ~~~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~ 76 (79)
T 1h95_A 4 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 76 (79)
T ss_dssp CCEEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSSEEEESBC
T ss_pred ccccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCCceeEEEE
Confidence 3467789999999999999999999989999999999997766678999999999999999999999999886
No 6
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.87 E-value=3.9e-22 Score=147.60 Aligned_cols=67 Identities=45% Similarity=0.765 Sum_probs=62.4
Q ss_pred eeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCC--CCceEEEEeCCCC
Q psy547 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD--KGHEAINVTGPDG 105 (282)
Q Consensus 34 ~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~--kG~~A~~V~~~~~ 105 (282)
.+|+|||||..||||||+++++ +|||||+|+|... |+++|.+|++|+|++..++ +|++|.+|+.++.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~~kG~~A~~V~~~~~ 70 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGD-TDVFVHYTAINAK----GFRTLNEGDIVTFDVEPGRNGKGPQAVNVTVVEP 70 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTS-CCEEEEGGGBCSS----SCSSCCTTCEEEEEEECCSCCSSSEEEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCC-CcEEEEhhhcccc----CCCCCCCCCEEEEEEEECCCCCCCEEEEEEeCCC
Confidence 5899999999999999999987 9999999999986 6899999999999999999 9999999997653
No 7
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=99.87 E-value=2.4e-22 Score=145.95 Aligned_cols=64 Identities=47% Similarity=0.809 Sum_probs=60.7
Q ss_pred eeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeC
Q psy547 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTG 102 (282)
Q Consensus 34 ~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~ 102 (282)
.+|+|||||..||||||+++++ +|||||+|+|... |+++|.+|++|+|++..+++|++|.+|+.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 65 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGE----GFKTLEEGQEVSFEIVQGNRGPQAANVVK 65 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSS----SCCCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCC-ccEEEEHHHcccc----CCCCCCCCCEEEEEEEECCCCcEeEEEEe
Confidence 5899999999999999999997 9999999999986 68999999999999999999999999975
No 8
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=99.86 E-value=8.7e-22 Score=143.35 Aligned_cols=65 Identities=40% Similarity=0.747 Sum_probs=60.7
Q ss_pred eeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
.+|+|||||.+||||||+++++++|||||+|+|.. .|++.|.+||+|+|++.++++|++|.+|+.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~----~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 66 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINM----EGFKTLKEGQRVSFDVTTGPKGKQAANIQA 66 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCG----GGGSSCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccc----cCCCCCCCCCEEEEEEEECCCCccceEEEe
Confidence 47999999999999999999999999999999984 367899999999999999999999999974
No 9
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=99.86 E-value=4.8e-22 Score=147.35 Aligned_cols=67 Identities=27% Similarity=0.340 Sum_probs=62.6
Q ss_pred eeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccc-cCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCCCC
Q psy547 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK-YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDG 105 (282)
Q Consensus 34 ~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~-~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~~~ 105 (282)
++|+|||||..||||||+++++ +|||||+|+|. .. |+++|.+|++|+|++..+++|++|++|+.++.
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG-~DvFvH~s~i~~~~----g~~~l~~G~~V~F~~~~g~kG~~A~~V~~~~~ 68 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDG-ESYFLHFSELLDKK----DEGKLVKGSMVHFDPTPTPKGLAAKAISLPLE 68 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTS-CEECCCGGGSSCSG----GGTTCCTTSEEEEEEECTTTSCEEEEEECCSC
T ss_pred CCEEEEEEECCCCEEEEecCCC-ceEEEEhhhcccCC----CCCCCCCCCEEEEEEEECCCCceeEEEEEcCc
Confidence 4799999999999999999997 99999999999 65 68999999999999999999999999997764
No 10
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=99.85 E-value=1.4e-21 Score=144.86 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=61.8
Q ss_pred eeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCCCC
Q psy547 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDG 105 (282)
Q Consensus 32 ~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~~~ 105 (282)
|+.+|+|||||..||||||+++++++| |||+|+|... | .|.+|++|+|++..+++|++|++|+.+..
T Consensus 1 M~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~----g--~l~~G~~V~F~~~~g~kG~~A~~V~~~~~ 67 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANP----D--LIKKDAAVTFEPTTNNKGLSAYAVKVVPL 67 (74)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSG----G--GCCTTCEEEEEEEECSSSEEEEEEEECCS
T ss_pred CCcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccC----C--CCCCCCEEEEEEEeCCCCceeEEEEeCCC
Confidence 467999999999999999999998777 9999999986 4 89999999999999999999999997764
No 11
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.85 E-value=6.3e-22 Score=143.70 Aligned_cols=65 Identities=48% Similarity=0.796 Sum_probs=60.6
Q ss_pred eeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCC
Q psy547 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGP 103 (282)
Q Consensus 34 ~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~ 103 (282)
++|+|||||..||||||+++++ +|||||+|+|... |++.|.+|++|+|++..+++|++|.+|+.+
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~G~~A~~V~~~ 65 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDEG-GDVFVHWSAIEME----GFKTLKEGQVVEFEIQEGKKGPQAAHVKVV 65 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTS-CBCBBCSSSSCCS----SCCCCCSSSEEEEEEECSSSCCEEEEEEEE
T ss_pred CcEEEEEEECCCCEEEEecCCC-ceEEEEhHHcccc----CCCCCCCCCEEEEEEEECCCCCEEEEEEEC
Confidence 4799999999999999999974 9999999999986 589999999999999999999999999854
No 12
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=99.85 E-value=2.4e-21 Score=142.63 Aligned_cols=67 Identities=46% Similarity=0.771 Sum_probs=61.8
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
.+.+|+|||||..||||||+++++++|||||+++|..+ |++.|.+||+|+|++.++++|++|++|+.
T Consensus 4 ~~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 70 (71)
T 3i2z_B 4 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITNGAKGPSAANVTA 70 (71)
T ss_dssp -CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS----SCCCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred ccccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc----cCcCCCCCCEEEEEEEECCCCCEeEEEEe
Confidence 46789999999999999999999889999999999954 57899999999999999999999999975
No 13
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=99.76 E-value=4e-23 Score=151.71 Aligned_cols=69 Identities=32% Similarity=0.590 Sum_probs=64.1
Q ss_pred eeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeC
Q psy547 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTG 102 (282)
Q Consensus 30 ~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~ 102 (282)
|+++++|+|||||.+||||||+++++++|||||+|+|... |+++|.+|++|+|++..+++|++|.+|+.
T Consensus 1 m~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~g~~A~~V~~ 69 (70)
T 2lss_A 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAA----GLHSLEEGQDVIFDLEEKQGKAYAVNLRI 69 (70)
Confidence 4567899999999999999999999889999999999986 58999999999999999999999999873
No 14
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=99.84 E-value=4.5e-21 Score=139.18 Aligned_cols=64 Identities=47% Similarity=0.793 Sum_probs=59.3
Q ss_pred eeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
.+|+|||||.+||||||+++++ +|||||+|+|... |++.|.+||+|+|++.++++|++|.+|+.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~kG~~A~~V~~ 65 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGE----GFKTLEEGQEVSFEIVQGNRGPQAANVVK 65 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSS----SCCCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCC-ccEEEEHHHcccc----CCCCCCCCCEEEEEEEECCCCcEeEEEEe
Confidence 4799999999999999999987 9999999999953 57899999999999999999999999874
No 15
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=99.84 E-value=2.8e-21 Score=148.20 Aligned_cols=66 Identities=36% Similarity=0.656 Sum_probs=60.6
Q ss_pred eeeeeEEEEEEcCCCeeEEe-------cCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeE
Q psy547 199 TKVCGVVKWFSVKSGYGFIA-------TPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVL 268 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~-------~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~ 268 (282)
.|.+|+|||||..||||||+ ++++++|||||+|+|.. .|++.|.+||+|+|++.+++||++|++|+
T Consensus 7 ~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~----~g~~~L~eG~~V~f~v~~g~kG~~A~~Vt 79 (90)
T 3ulj_A 7 LRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYM----EGFRSLKEGEPVEFTFKKSSKGFESLRVT 79 (90)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCC----SSSCCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred cccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcc----cCCCccCCCCEEEEEEEECCCCcEEEEEE
Confidence 56789999999999999998 45678999999999984 46899999999999999999999999997
No 16
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.83 E-value=1.6e-20 Score=138.83 Aligned_cols=64 Identities=45% Similarity=0.735 Sum_probs=59.2
Q ss_pred eeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC--CCceeeeeEe
Q psy547 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD--KGNQFCFVLK 269 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~--kG~~A~~V~~ 269 (282)
.+|+|||||..||||||+++++ +|||||+|+|.. .|++.|.+||+|+|++..++ +|++|.+|+.
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~----~g~~~l~~G~~V~f~~~~~~~~kG~~A~~V~~ 67 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGD-TDVFVHYTAINA----KGFRTLNEGDIVTFDVEPGRNGKGPQAVNVTV 67 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTS-CCEEEEGGGBCS----SSCSSCCTTCEEEEEEECCSCCSSSEEEEEEE
T ss_pred CCEEEEEEECCCCEEEEecCCC-CcEEEEhhhccc----cCCCCCCCCCEEEEEEEECCCCCCCEEEEEEe
Confidence 4799999999999999999986 999999999994 35789999999999999999 9999999974
No 17
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.83 E-value=7.9e-21 Score=158.66 Aligned_cols=80 Identities=39% Similarity=0.741 Sum_probs=72.4
Q ss_pred eeeeeeEEEEeeCCCceEEEeCC-------CCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATP-------SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGP 103 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~-------d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~ 103 (282)
.++.+|+|||||..||||||+++ ++++|||||+|+|... |+++|.+|++|+|+++.+++|++|++|+.+
T Consensus 7 l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~----g~~~l~eG~~V~f~~~~g~kG~~A~~V~~p 82 (148)
T 3ts2_A 7 LLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHME----GFRSLKEGEAVEFTFKKSAKGLESIRVTGP 82 (148)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSS----SSCCCCTTCEEEEEEEEETTEEEEEEEESG
T ss_pred cccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhccc----CCccCCCCCEEEEEEEEccccchhhccccc
Confidence 46689999999999999999987 4678999999999886 699999999999999999999999999999
Q ss_pred CCCcccccccc
Q psy547 104 DGRHVQGSQFA 114 (282)
Q Consensus 104 ~~~~~~~~~~~ 114 (282)
+..++.++...
T Consensus 83 gg~pv~GS~rr 93 (148)
T 3ts2_A 83 GGVFCIGSERR 93 (148)
T ss_dssp GGCCCCCCTTS
T ss_pred CCccccccccc
Confidence 98888777633
No 18
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.83 E-value=1.5e-20 Score=144.10 Aligned_cols=69 Identities=26% Similarity=0.497 Sum_probs=62.9
Q ss_pred eeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCC-C-ceEEEEeCCCC
Q psy547 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK-G-HEAINVTGPDG 105 (282)
Q Consensus 30 ~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~k-G-~~A~~V~~~~~ 105 (282)
+.++.+|+||||| ||||||+++++++|||||+++|... ++.|.+|++|+|++..+++ | ++|.+|+.++.
T Consensus 15 ~~~~~~G~Vkwf~--KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~~~~ 85 (89)
T 1wfq_A 15 AALRETGVIEKLL--TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISG 85 (89)
T ss_dssp CCCEEEEEEEEEC--SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECSSSCCEEEEEEEESSC
T ss_pred cccccceEEEEEe--CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECCCCCCcEEEEEEECCc
Confidence 3567899999997 9999999999889999999999875 6899999999999999998 7 89999998754
No 19
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.82 E-value=1.3e-20 Score=136.78 Aligned_cols=64 Identities=48% Similarity=0.797 Sum_probs=58.9
Q ss_pred eeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
++|+|||||..||||||++++ ++|||||+|+|... |++.|.+||+|+|++..+++|++|.+|+.
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~-g~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~G~~A~~V~~ 64 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDE-GGDVFVHWSAIEME----GFKTLKEGQVVEFEIQEGKKGPQAAHVKV 64 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETT-SCBCBBCSSSSCCS----SCCCCCSSSEEEEEEECSSSCCEEEEEEE
T ss_pred CcEEEEEEECCCCEEEEecCC-CceEEEEhHHcccc----CCCCCCCCCEEEEEEEECCCCCEEEEEEE
Confidence 469999999999999999997 59999999999953 57899999999999999999999999874
No 20
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=99.71 E-value=6.9e-22 Score=145.09 Aligned_cols=68 Identities=29% Similarity=0.522 Sum_probs=62.3
Q ss_pred eeeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 198 ~~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
..+++|+|||||.+||||||+++++++|||||+|+|... |++.|.+||+|+|++..+++|++|.+|+.
T Consensus 2 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~~~~g~~A~~V~~ 69 (70)
T 2lss_A 2 ATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAA----GLHSLEEGQDVIFDLEEKQGKAYAVNLRI 69 (70)
Confidence 356789999999999999999999899999999999943 57889999999999999999999999874
No 21
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=99.82 E-value=1.6e-20 Score=139.11 Aligned_cols=64 Identities=25% Similarity=0.289 Sum_probs=59.3
Q ss_pred eeeEEEEEEcCCCeeEEecCCCCccEEEEecccc-ccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK-YNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~-~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
++|+|||||..||||||+++++ +|||||+|+|. .. |++.|.+||+|+|++.+++||++|++|+.
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG-~DvFvH~s~i~~~~----g~~~l~~G~~V~F~~~~g~kG~~A~~V~~ 65 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDG-ESYFLHFSELLDKK----DEGKLVKGSMVHFDPTPTPKGLAAKAISL 65 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTS-CEECCCGGGSSCSG----GGTTCCTTSEEEEEEECTTTSCEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCC-ceEEEEhhhcccCC----CCCCCCCCCEEEEEEEECCCCceeEEEEE
Confidence 3699999999999999999997 99999999998 54 57899999999999999999999999984
No 22
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=99.81 E-value=6.4e-20 Score=135.91 Aligned_cols=63 Identities=17% Similarity=0.329 Sum_probs=57.8
Q ss_pred eeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 200 KVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 200 ~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
+.+|+|||||..||||||+++++++| |||+|+|... + .|.+||+|+|++..++||++|++|+.
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~----g--~l~~G~~V~F~~~~g~kG~~A~~V~~ 64 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANP----D--LIKKDAAVTFEPTTNNKGLSAYAVKV 64 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSG----G--GCCTTCEEEEEEEECSSSEEEEEEEE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccC----C--CCCCCCEEEEEEEeCCCCceeEEEEe
Confidence 46899999999999999999998888 9999999943 3 79999999999999999999999984
No 23
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=148.63 Aligned_cols=69 Identities=23% Similarity=0.386 Sum_probs=61.7
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEe---CCCCceEEEEeCCCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ---GDKGHEAINVTGPDG 105 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~---~~kG~~A~~V~~~~~ 105 (282)
.++.+|+|||||..||||||+++++++|||||+++|... ..|.+|++|+|++.. +.+|++|++|+.++.
T Consensus 60 g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~~~~~~g~qA~nV~~~~~ 131 (147)
T 3aqq_A 60 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHL 131 (147)
T ss_dssp SCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC--CCSCEEEEEEEEEEC
T ss_pred CCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEeccCCCCCceEEEEEeCCC
Confidence 357899999999999999999999989999999999853 489999999999987 457799999998764
No 24
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.78 E-value=9.2e-20 Score=139.44 Aligned_cols=68 Identities=24% Similarity=0.491 Sum_probs=62.2
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCC-ceEEEEeCCCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG-HEAINVTGPDG 105 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG-~~A~~V~~~~~ 105 (282)
.++.+|+||||| ||||||+++++++|||||+|+|... ++.|.+|++|+|++..+.+| ++|.+|+.++.
T Consensus 16 ~~~~~G~Vk~f~--kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~~g~~Gk~~A~~V~~~~~ 84 (88)
T 2yty_A 16 SKRLLGYVATLK--DNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLSKGKGNKVSAEKVNKTSG 84 (88)
T ss_dssp CCCEEEEEEEEC--SSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCCCCSCSCCBCCSCEECCC
T ss_pred CCceeEEEEEEE--CCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEEECCCCCeEeEEEEECCC
Confidence 466899999997 9999999999899999999999975 68999999999999999999 89999997653
No 25
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=135.89 Aligned_cols=70 Identities=27% Similarity=0.388 Sum_probs=63.5
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEeCCCCCc
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRH 107 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~~~~~~~ 107 (282)
.++.+|+|||| .||||||+++++++|||||+|+|... ++.|.+|++|+|++..+.+|++|.+|+.+....
T Consensus 16 ~~~~~G~Vkwf--~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~~g~~A~~V~~~~~~~ 85 (97)
T 2ytx_A 16 QARCQGVVCAM--KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIKDRNGKEVATDVRLLPQGT 85 (97)
T ss_dssp CCCEEEEECCC--CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEECCCSSSCBEEEEEECCCSS
T ss_pred CcceeEEEEEE--eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEEcCCCCcEEEEEEECCCCc
Confidence 46689999999 99999999999889999999999975 689999999999999888889999999887643
No 26
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.77 E-value=6.4e-19 Score=134.99 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=58.4
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCC-C-ceeeeeEe
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK-G-NQFCFVLK 269 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~k-G-~~A~~V~~ 269 (282)
.+.+|+||||| ||||||+++++++|||||+++|... ++.|.+||+|+|++.++++ | ++|++|+.
T Consensus 17 ~~~~G~Vkwf~--KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~ 82 (89)
T 1wfq_A 17 LRETGVIEKLL--TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDRRTGKPIAVKLVK 82 (89)
T ss_dssp CEEEEEEEEEC--SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECSSSCCEEEEEEEE
T ss_pred cccceEEEEEe--CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEECCCCCCcEEEEEEE
Confidence 56789999996 9999999999889999999999943 5789999999999999998 7 89999985
No 27
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-19 Score=136.80 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=60.5
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCC---CceEEEEeCCCCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK---GHEAINVTGPDGR 106 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~k---G~~A~~V~~~~~~ 106 (282)
.++.+|+||||| ||||||+++++++|||||+|+|.. + +.|.+|++|+|++..+++ +++|.+|+.+...
T Consensus 6 ~~r~~G~Vk~f~--KGfGFI~~~~gg~DvFvH~s~i~~-----~-~~L~~G~~V~F~v~~g~kg~G~~~A~~V~~~~~~ 76 (89)
T 1x65_A 6 SGREMGVIAAMR--DGFGFIKCVDRDVRMFFHFSEILD-----G-NQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKG 76 (89)
T ss_dssp CCCEEEEEEECC--TTBCEEEESSSSSCCCCBTTGGGG-----S-CCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBT
T ss_pred CcceeEEEEEEe--CCcceeecCCCCccEEEEhhhccC-----C-CCCCCCCEEEEEEEeCCCcCCCceeeEEEECCCC
Confidence 357899999996 999999999989999999999986 2 689999999999999987 4899999987653
No 28
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.75 E-value=1.6e-18 Score=144.68 Aligned_cols=67 Identities=34% Similarity=0.674 Sum_probs=61.3
Q ss_pred eeeeeEEEEEEcCCCeeEEecC-------CCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 199 TKVCGVVKWFSVKSGYGFIATP-------SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~-------d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
.+.+|+|||||..||||||+++ ++++|||||+++|.. .|++.|.+|++|+|++..+++|++|++|+.
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~----~g~~~l~eG~~V~f~~~~g~kG~~A~~V~~ 81 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHM----EGFRSLKEGEAVEFTFKKSAKGLESIRVTG 81 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCS----SSSCCCCTTCEEEEEEEEETTEEEEEEEES
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcc----cCCccCCCCCEEEEEEEEccccchhhcccc
Confidence 4578999999999999999987 468999999999984 468999999999999999999999999985
No 29
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=131.75 Aligned_cols=64 Identities=23% Similarity=0.434 Sum_probs=58.5
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCC-ceeeeeEe
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG-NQFCFVLK 269 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG-~~A~~V~~ 269 (282)
.+.+|+||||| ||||||+++++++|||||+++|... ++.|.+||+|+|++.++++| ++|.+|+.
T Consensus 17 ~~~~G~Vk~f~--kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~~g~~Gk~~A~~V~~ 81 (88)
T 2yty_A 17 KRLLGYVATLK--DNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLSKGKGNKVSAEKVNK 81 (88)
T ss_dssp CCEEEEEEEEC--SSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCCCCSCSCCBCCSCEE
T ss_pred CceeEEEEEEE--CCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEEECCCCCeEeEEEEE
Confidence 45689999997 8999999999999999999999943 57899999999999999999 79999985
No 30
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.3e-18 Score=140.02 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=58.3
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEE---cCCCceeeeeEe
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ---GDKGNQFCFVLK 269 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~---~~kG~~A~~V~~ 269 (282)
.+.+|+|||||.+||||||+++++++|||||+++|... ..|.+||+|+|++.. +.+|++|.+|+.
T Consensus 61 ~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~~~~~~g~qA~nV~~ 128 (147)
T 3aqq_A 61 PVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSIPPKNEKLQAVEVVI 128 (147)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC--CCSCEEEEEEEE
T ss_pred CccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEeccCCCCCceEEEEEe
Confidence 46789999999999999999999899999999999832 489999999999987 457799999984
No 31
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=129.97 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=58.8
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeEec
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVLKN 270 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~~~ 270 (282)
.+.+|+|||| .||||||+++++++|||||+++|... ++.|.+||+|+|++..+++|++|.+|+..
T Consensus 17 ~~~~G~Vkwf--~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~~~~~g~~A~~V~~~ 81 (97)
T 2ytx_A 17 ARCQGVVCAM--KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIKDRNGKEVATDVRLL 81 (97)
T ss_dssp CCEEEEECCC--CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEECCCSSSCBEEEEEEC
T ss_pred cceeEEEEEE--eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEEcCCCCcEEEEEEEC
Confidence 5578999999 89999999999889999999999943 57899999999999998888999999843
No 32
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-18 Score=131.43 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=58.8
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCC---CceeeeeEecceee
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK---GNQFCFVLKNIVLY 274 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~k---G~~A~~V~~~~~~~ 274 (282)
.+.+|+||||+ ||||||+++++++|||||+++|.. + +.|.+||+|+|++..+++ +++|++|+..-..+
T Consensus 7 ~r~~G~Vk~f~--KGfGFI~~~~gg~DvFvH~s~i~~-----~-~~L~~G~~V~F~v~~g~kg~G~~~A~~V~~~~~~s 77 (89)
T 1x65_A 7 GREMGVIAAMR--DGFGFIKCVDRDVRMFFHFSEILD-----G-NQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGT 77 (89)
T ss_dssp CCEEEEEEECC--TTBCEEEESSSSSCCCCBTTGGGG-----S-CCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBTT
T ss_pred cceeEEEEEEe--CCcceeecCCCCccEEEEhhhccC-----C-CCCCCCCEEEEEEEeCCCcCCCceeeEEEECCCCc
Confidence 46789999995 999999999989999999999993 2 689999999999999997 48999998543333
No 33
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-18 Score=126.32 Aligned_cols=66 Identities=26% Similarity=0.435 Sum_probs=59.7
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCC-CCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCC-Cc-eEEEEeCCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSS-NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK-GH-EAINVTGPD 104 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~-~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~k-G~-~A~~V~~~~ 104 (282)
.++.+|+|+|| .||||||+++++ ++|||||+++|. . + +.|.+|++|+|+++.+++ |+ +|++|+.+.
T Consensus 6 ~~~~~G~V~~~--~KGfGFI~~ddg~g~DvFvH~s~i~-~----g-~~l~~G~~V~F~v~~~~k~G~~~A~~V~~~~ 74 (79)
T 2ytv_A 6 SGLRRATVECV--KDQFGFINYEVGDSKKLFFHVKEVQ-D----G-IELQAGDEVEFSVILNQRTGKCSACNVWRVS 74 (79)
T ss_dssp CSBCCEEEEEC--CSSEEEESCCCSSSSSEEEETTTCC-S----S-CCCCTTCEEECBCEECSSSCCEECCSCEECS
T ss_pred CCcccEEEEEe--cccceeEeCCCCCCCcEEEEhHHcC-C----C-CcCCCCCEEEEEEEECCCCCCceeEEEEECC
Confidence 46689999999 699999999987 699999999998 4 5 799999999999999988 88 999999765
No 34
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.66 E-value=9.5e-17 Score=120.28 Aligned_cols=64 Identities=25% Similarity=0.478 Sum_probs=56.8
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCC-CccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCC-Cc-eeeeeEec
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSS-NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK-GN-QFCFVLKN 270 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~-~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~k-G~-~A~~V~~~ 270 (282)
++.+|+|+|| .||||||+++++ ++|||||+++|. . + +.|.+||+|+|++..+++ |+ +|++|+..
T Consensus 7 ~~~~G~V~~~--~KGfGFI~~ddg~g~DvFvH~s~i~-~----g-~~l~~G~~V~F~v~~~~k~G~~~A~~V~~~ 73 (79)
T 2ytv_A 7 GLRRATVECV--KDQFGFINYEVGDSKKLFFHVKEVQ-D----G-IELQAGDEVEFSVILNQRTGKCSACNVWRV 73 (79)
T ss_dssp SBCCEEEEEC--CSSEEEESCCCSSSSSEEEETTTCC-S----S-CCCCTTCEEECBCEECSSSCCEECCSCEEC
T ss_pred CcccEEEEEe--cccceeEeCCCCCCCcEEEEhHHcC-C----C-CcCCCCCEEEEEEEECCCCCCceeEEEEEC
Confidence 4467999999 699999999987 699999999999 3 3 689999999999999998 88 99999854
No 35
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.56 E-value=4.8e-15 Score=115.94 Aligned_cols=58 Identities=33% Similarity=0.552 Sum_probs=51.8
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccc--cCCCCCCEEEEEEEeCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLY--KTLAEGETVEFDIMQGD 92 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~--~~l~~Gd~V~f~v~~~~ 92 (282)
..+.+|+|||||..||||||+++++++|+|||+|+|... ++ +.|.+|+.|+|++....
T Consensus 14 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~----~~~~~~l~~Ge~V~g~V~~i~ 73 (101)
T 2bh8_A 14 SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSG----AAVRGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp --CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSS----SCCCCCCCTTCEEEEEEEECC
T ss_pred cccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecC----CccccCCCCCCEEEEEEEEeC
Confidence 456799999999999999999999999999999999976 47 89999999999998755
No 36
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.48 E-value=6e-14 Score=109.69 Aligned_cols=60 Identities=33% Similarity=0.552 Sum_probs=52.4
Q ss_pred eeeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccc--cCCCCCCEEEEEEEEcC-CC
Q psy547 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLY--KTLAEGETVEFDIMQGD-KG 261 (282)
Q Consensus 198 ~~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~--~~l~~Gd~V~F~i~~~~-kG 261 (282)
..+.+|+|||||..||||||+++++++|+|||+++|... ++ +.|.+|+.|+|++.... .|
T Consensus 14 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~----~~~~~~l~~Ge~V~g~V~~i~~fG 76 (101)
T 2bh8_A 14 SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSG----AAVRGNPQQGDRVEGKIKSITDFG 76 (101)
T ss_dssp --CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSS----SCCCCCCCTTCEEEEEEEECCSEE
T ss_pred cccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecC----CccccCCCCCCEEEEEEEEeCCcE
Confidence 356789999999999999999999999999999999954 46 78999999999999865 46
No 37
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.37 E-value=0.0022 Score=64.54 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=39.6
Q ss_pred eeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeC
Q psy547 33 KVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 33 ~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
.+.|+|+-= .|||||+.+++ ++|||+.-..+... ..||+|...+...
T Consensus 21 ~~~G~~~~~--~~GfgF~~~d~-~~difi~~~~~~~a---------~~GD~V~v~i~~~ 67 (644)
T 2id0_A 21 RAEGVVKAT--EKGFGFLEVDA-QKSYFIPPPQMKKV---------MHGDRIIAVIHSE 67 (644)
T ss_dssp EEEEEEECC--SSSCEEEECSS-SCEEEECHHHHTTS---------CTTCEEEEEEECC
T ss_pred eEEEEEEEe--cCCcEEEEECC-CCCEEECHHHHhcC---------CCCCEEEEEEecC
Confidence 578999864 79999999986 68999999888665 7999999998754
No 38
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.0075 Score=54.81 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=42.5
Q ss_pred eeeeeeEEEEeeCCCceE-EEeCCCC-CCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEE
Q psy547 31 ATKVCGVVKWFSVKSGYG-FIATPSS-NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAIN 99 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfG-FI~~~d~-~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~ 99 (282)
.....|+|++-+ +.|| |+.- .. +.|+|+|+|++.... -..+..||.|...+..+.++..+..
T Consensus 70 G~~~~g~V~~v~--~~~GaFVdi-G~~~~d~lvp~sel~~~~----~~~~~~Gd~v~v~l~iD~~~Ri~ls 133 (285)
T 3go5_A 70 DQFGWGRVTEVR--KDLGVFVDT-GLPDKEIVVSLDILPELK----ELWPKKGDQLYIRLEVDKKDRIWGL 133 (285)
T ss_dssp SSCEEEEEEEEE--TTTEEEEEC-SCTTCCEEEEGGGSCSSG----GGSCCTTCEEEEEEEECTTSCEEEE
T ss_pred CCEEEEEEEEEc--cCceEEEEE-CCCCcEEEEEHHHCCccc----ccccCCCCEEEEEEEECCCCcEEEE
Confidence 445789999874 3456 5554 44 479999999985431 2467999999888877765544333
No 39
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=96.28 E-value=0.13 Score=46.58 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=39.7
Q ss_pred eeeEEEEEEcCCCeeEEecCCC-CccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCc
Q psy547 201 VCGVVKWFSVKSGYGFIATPSS-NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~-~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~ 262 (282)
..|+|++.+ +.||....-+. +.|+|+|++++.... ...++.||.|...+..++++.
T Consensus 73 ~~g~V~~v~--~~~GaFVdiG~~~~d~lvp~sel~~~~----~~~~~~Gd~v~v~l~iD~~~R 129 (285)
T 3go5_A 73 GWGRVTEVR--KDLGVFVDTGLPDKEIVVSLDILPELK----ELWPKKGDQLYIRLEVDKKDR 129 (285)
T ss_dssp EEEEEEEEE--TTTEEEEECSCTTCCEEEEGGGSCSSG----GGSCCTTCEEEEEEEECTTSC
T ss_pred EEEEEEEEc--cCceEEEEECCCCcEEEEEHHHCCccc----ccccCCCCEEEEEEEECCCCc
Confidence 458998873 45775554454 589999999986321 135799999988887776653
No 40
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=95.97 E-value=0.014 Score=46.95 Aligned_cols=52 Identities=25% Similarity=0.535 Sum_probs=42.4
Q ss_pred eeeEEEEEEcCCCeeEEecCC-----CCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCC
Q psy547 201 VCGVVKWFSVKSGYGFIATPS-----SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d-----~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG 261 (282)
..|++.-- .+||||+.+++ +..||||+.+.++. ..|..||.|+-.+.....|
T Consensus 51 ~~Gvlei~--~dG~GFlr~~~~~y~~~~~DiyVs~~~irr-------f~lr~GD~V~g~vr~~~~~ 107 (130)
T 1a62_A 51 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRR-------FNLRTGDTISGKIRPPKEG 107 (130)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHH-------TTCCTTCEEEEEEECCCTT
T ss_pred EEEEEEEc--CCCeEEEecCCcCCCCCCCCEEECHHHHhH-------hCCCCCCEEEEEEeCCCCC
Confidence 46777543 57999999873 67899999999994 3589999999999877666
No 41
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=95.90 E-value=0.019 Score=46.24 Aligned_cols=64 Identities=22% Similarity=0.422 Sum_probs=48.9
Q ss_pred eeeeEEEEeeCCCceEEEeCCC-----CCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCC---ceEEEEeCCC
Q psy547 33 KVCGVVKWFSVKSGYGFIATPS-----SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG---HEAINVTGPD 104 (282)
Q Consensus 33 ~~~G~Vkwfn~~kGfGFI~~~d-----~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG---~~A~~V~~~~ 104 (282)
...|++.-- .+||||+.+++ +..||||+.+.++.. .|..||.|+-.+.....+ ..-..|..++
T Consensus 50 ~~~Gvlei~--~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf-------~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vn 120 (130)
T 1a62_A 50 FGDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRF-------NLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 (130)
T ss_dssp EEEEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHHT-------TCCTTCEEEEEEECCCTTCCSEEEEEEEEET
T ss_pred EEEEEEEEc--CCCeEEEecCCcCCCCCCCCEEECHHHHhHh-------CCCCCCEEEEEEeCCCCCCcccceeEEEeEC
Confidence 367877654 57999999983 678999999999753 579999999998876554 3446676666
Q ss_pred C
Q psy547 105 G 105 (282)
Q Consensus 105 ~ 105 (282)
+
T Consensus 121 g 121 (130)
T 1a62_A 121 F 121 (130)
T ss_dssp T
T ss_pred C
Confidence 5
No 42
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=91.54 E-value=0.24 Score=49.63 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=38.8
Q ss_pred eeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEc
Q psy547 200 KVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258 (282)
Q Consensus 200 ~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~ 258 (282)
...|+|+. ..+||||+.+++ ++|||+.-..+. ..-.||+|...+...
T Consensus 21 ~~~G~~~~--~~~GfgF~~~d~-~~difi~~~~~~---------~a~~GD~V~v~i~~~ 67 (644)
T 2id0_A 21 RAEGVVKA--TEKGFGFLEVDA-QKSYFIPPPQMK---------KVMHGDRIIAVIHSE 67 (644)
T ss_dssp EEEEEEEC--CSSSCEEEECSS-SCEEEECHHHHT---------TSCTTCEEEEEEECC
T ss_pred eEEEEEEE--ecCCcEEEEECC-CCCEEECHHHHh---------cCCCCCEEEEEEecC
Confidence 45788875 479999999986 689999988777 357999999999865
No 43
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.40 E-value=0.86 Score=35.56 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=40.6
Q ss_pred eeeeeeeeEEEEeeCCCceE-EEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeC
Q psy547 29 VLATKVCGVVKWFSVKSGYG-FIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 29 ~~~~~~~G~Vkwfn~~kGfG-FI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
..-..+.|+|+.... || ||..+....+-|+|+++|....-..-...++.||.|...+..-
T Consensus 21 ~vG~iv~G~V~~I~~---fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~v 81 (119)
T 2cqo_A 21 ALYTIFQGEVAMVTD---YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR 81 (119)
T ss_dssp CTTCEEEEEEEEEET---TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeC---ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEE
Confidence 345668999999854 56 6666433469999999996531000013589999999987653
No 44
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.39 E-value=0.49 Score=36.99 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=38.9
Q ss_pred eeeeeEEEEEEcCCCee-EEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEc
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~ 258 (282)
..+.|+|+.... || ||..++.+.+-|+|++++.......-...++.||.|...|..-
T Consensus 24 ~iv~G~V~~I~~---fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~v 81 (119)
T 2cqo_A 24 TIFQGEVAMVTD---YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR 81 (119)
T ss_dssp CEEEEEEEEEET---TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEeC---ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEE
Confidence 557899998743 77 5555333579999999997431111113489999999988764
No 45
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=88.66 E-value=2 Score=41.94 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=57.9
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCC--------cccc-cCCCCCCEEEEEEEEcCCCceeeeeEe
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP--------RKLY-KTLAEGETVEFDIMQGDKGNQFCFVLK 269 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~--------r~g~-~~l~~Gd~V~F~i~~~~kG~~A~~V~~ 269 (282)
+-+.|+|+..-+--+--||.-.. +++-|+|++++..... ...+ ..|++||.|...|...+.|-....++.
T Consensus 47 nIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~lTt 125 (517)
T 2bx2_L 47 NIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 125 (517)
T ss_dssp CEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCEEES
T ss_pred CEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCceEEe
Confidence 56889999886655588998765 8899999999852210 0001 238999999999999887766666776
Q ss_pred cc---eeeeeeeec
Q psy547 270 NI---VLYFSFVPQ 280 (282)
Q Consensus 270 ~~---~~~~~~~~~ 280 (282)
+| .-|+-|+|.
T Consensus 126 ~isl~GRylVl~P~ 139 (517)
T 2bx2_L 126 FISLAGSYLVLMPN 139 (517)
T ss_dssp SCCEECSSEEEETT
T ss_pred eEEeccceEEEeCC
Confidence 65 345566664
No 46
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=86.95 E-value=1.3 Score=31.71 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=38.7
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEc
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~ 258 (282)
..+.|+|+... .||+...-+.+.+-|+|++++.... ...++.||.|...+..-
T Consensus 7 ~iv~G~V~~v~---~~G~fV~l~~~~~Gllh~sel~~~~----~~~~~~Gd~V~v~V~~v 59 (80)
T 2k52_A 7 KFYKGVVTRIE---KYGAFINLNEQVRGLLRPRDMISLR----LENLNVGDEIIVQAIDV 59 (80)
T ss_dssp CEEEEEEEEEE---TTEEEEEEETTEEEEECGGGCSSCC----GGGCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEe---CCEEEEEECCCCEEEEEHHHCCccc----ceeeCCCCEEEEEEEEE
Confidence 44679998874 3775544444789999999997431 24699999999988764
No 47
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=85.76 E-value=1.6 Score=34.47 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=40.4
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEc
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~ 258 (282)
..+.|+|+... .||+...-+.+.+-|+|++++.......-...++.||.|...|..-
T Consensus 9 ~iv~G~V~~i~---~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~v 65 (130)
T 2k4k_A 9 SVYTGKVTGLQ---AYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAV 65 (130)
T ss_dssp CEEEEEEEEEE---TTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEe---CCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEE
Confidence 44679998873 4776665555789999999997432111124699999999988764
No 48
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=85.42 E-value=3.4 Score=31.69 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=40.8
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEecccccc-CCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN-NPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~-~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+... .||+...-+.+-+-|+|++++..+ ..+.-...+..||.|...|..-+
T Consensus 32 ~~~~G~V~~v~---~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 32 TKLTGRVTNLT---DYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp CEEEEEEEEEE---TTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEE---CCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE
Confidence 45779998874 378666555578999999999642 00111246999999999987644
No 49
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=84.84 E-value=1.7 Score=31.17 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=38.1
Q ss_pred eeeeeEEEEeeCCCceE-EEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEe
Q psy547 32 TKVCGVVKWFSVKSGYG-FIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90 (282)
Q Consensus 32 ~~~~G~Vkwfn~~kGfG-FI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~ 90 (282)
..+.|+|+...+ || ||+.++ +-+-|+|+|++.... ...++.||.|...+..
T Consensus 7 ~iv~G~V~~v~~---~G~fV~l~~-~~~Gllh~sel~~~~----~~~~~~Gd~V~v~V~~ 58 (80)
T 2k52_A 7 KFYKGVVTRIEK---YGAFINLNE-QVRGLLRPRDMISLR----LENLNVGDEIIVQAID 58 (80)
T ss_dssp CEEEEEEEEEET---TEEEEEEET-TEEEEECGGGCSSCC----GGGCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEeC---CEEEEEECC-CCEEEEEHHHCCccc----ceeeCCCCEEEEEEEE
Confidence 347899988753 56 555544 678999999996531 2579999999998865
No 50
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.54 E-value=2.1 Score=32.27 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=40.5
Q ss_pred eeeeeEEEEEEcCCCee-EEecCC--CCccEEEEeccccccCC-cccccCCCCCCEEEEEEEEcCCC
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATPS--SNEDVFVHSKRIKYNNP-RKLYKTLAEGETVEFDIMQGDKG 261 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~d--~~~dVF~H~s~l~~~~~-r~g~~~l~~Gd~V~F~i~~~~kG 261 (282)
..+.|+|+.. ..|| ||...+ .+.+-|+|++++..... ..-...++.||.|...+..-+.+
T Consensus 14 ~i~~G~V~~v---~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~ 77 (103)
T 2eqs_A 14 DIYNGKVTSI---MQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp CEEEEEEEEE---CSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT
T ss_pred CEEEEEEEEE---eccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECC
Confidence 5578999887 3488 555544 27899999999942210 00113489999999998876543
No 51
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=81.65 E-value=3 Score=32.88 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=39.0
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
...+.|+|+.... ||+...-+.+-+-|+|+|.+...--..-...++.||.|...|..-
T Consensus 8 G~iv~G~V~~i~~---~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~v 65 (130)
T 2k4k_A 8 GSVYTGKVTGLQA---YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAV 65 (130)
T ss_dssp TCEEEEEEEEEET---TEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---CeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEE
Confidence 3457899998843 564444444689999999996431000125689999999988653
No 52
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=81.44 E-value=2.9 Score=31.70 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=40.3
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+... .||+...-+.+-+-|+|++++.......-...+..||.|.+.|..-+
T Consensus 33 ~iv~G~V~~v~---~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 33 AIVTGKVTAVD---AKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp SEEEEEEEEEC---SSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEE---CCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEE
Confidence 45779998873 36665555557899999999964311111235899999999887644
No 53
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=78.45 E-value=7.9 Score=29.57 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=39.5
Q ss_pred eeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccC-CCcccccCCCCCCEEEEEEEeC
Q psy547 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN-NPRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 30 ~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~-~~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
....+.|+|+.-.. ||+...-+.+-+.|+|+|.+... ..+.--..++.||.|...+..-
T Consensus 30 ~G~~~~G~V~~v~~---~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~v 89 (115)
T 2khi_A 30 EGTKLTGRVTNLTD---YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDI 89 (115)
T ss_dssp SSCEEEEEEEEEET---TEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEEEEC---CEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEE
Confidence 34568899998754 66444434468999999999541 0000124689999999998653
No 54
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=77.61 E-value=6 Score=36.00 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=46.2
Q ss_pred eeeeeeEEEEeeCCCceE-EEeCCC-CCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCC--CCceEEEEeC
Q psy547 31 ATKVCGVVKWFSVKSGYG-FIATPS-SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD--KGHEAINVTG 102 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfG-FI~~~d-~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~--kG~~A~~V~~ 102 (282)
...+.|+|+...+ || ||.-.+ ++-+-|+|+|+|.....+.--..+++||.|...+..-+ ++.....+..
T Consensus 14 G~iv~G~V~~I~~---fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~ 86 (308)
T 1q8k_A 14 EDVVMVNVRSIQE---MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRR 86 (308)
T ss_dssp CCEEEEEEEEEET---TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSS
T ss_pred CCEEEEEEEEEeC---cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 4558899999864 66 666653 57899999999964311111245899999999987643 4544444443
No 55
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.16 E-value=5.9 Score=29.72 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=41.4
Q ss_pred eeeeeeEEEEeeCCCceE-EEeCCC--CCCcEEEEeeccccCCC-cccccCCCCCCEEEEEEEeCCCC
Q psy547 31 ATKVCGVVKWFSVKSGYG-FIATPS--SNEDVFVHSKRIKYNNP-RKLYKTLAEGETVEFDIMQGDKG 94 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfG-FI~~~d--~~~dvF~H~s~l~~~~~-~~g~~~l~~Gd~V~f~v~~~~kG 94 (282)
-..+.|+|+..- -|| ||+..+ .+.+-|+|+|++..... +.--..++.||.|...+..-+.+
T Consensus 13 G~i~~G~V~~v~---~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~ 77 (103)
T 2eqs_A 13 GDIYNGKVTSIM---QFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp TCEEEEEEEEEC---SSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT
T ss_pred CCEEEEEEEEEe---ccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECC
Confidence 455789999873 366 666654 26799999999942210 00014589999999998765544
No 56
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=74.71 E-value=5.5 Score=33.37 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=39.8
Q ss_pred eeeeeeEEEEeeCCCceE-EEeCC-CCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeC--CCCceEEEE
Q psy547 31 ATKVCGVVKWFSVKSGYG-FIATP-SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG--DKGHEAINV 100 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfG-FI~~~-d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~--~kG~~A~~V 100 (282)
...+.|+|+... -|| ||.-+ .++-+-|+|+|.+....-+.--..++.||.|...+..- .++.....+
T Consensus 16 G~iv~G~V~~I~---~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSl 86 (182)
T 1kl9_A 16 EDVVMVNVRSIA---EMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSK 86 (182)
T ss_dssp TCEEEEEEEEEC---SSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEES
T ss_pred CCEEEEEEEEEe---ccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEE
Confidence 456889999874 477 66664 34679999999996431000124589999999988653 345433333
No 57
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=74.68 E-value=4.6 Score=30.52 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=39.3
Q ss_pred eeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeC
Q psy547 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 30 ~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
....+.|+|+.... .| =||..++ +-+-|+|++.+....-..-...++.||.|.+.+..-
T Consensus 31 ~G~iv~G~V~~v~~-~G-~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~v 89 (109)
T 2khj_A 31 KGAIVTGKVTAVDA-KG-ATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV 89 (109)
T ss_dssp SSSEEEEEEEEECS-SC-EEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEEEEC-Ce-EEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEE
Confidence 34568999999853 23 3555544 678999999996431000124689999999987653
No 58
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=74.61 E-value=3.5 Score=39.21 Aligned_cols=52 Identities=25% Similarity=0.487 Sum_probs=41.3
Q ss_pred eeeEEEEEEcCCCeeEEecC-----CCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCC
Q psy547 201 VCGVVKWFSVKSGYGFIATP-----SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~-----d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG 261 (282)
..|++--. ..||||+... .+..||||..+.++. ..|..||.|+=.+..-..|
T Consensus 58 ~~g~le~~--~~g~gflr~~~~~y~~~~~d~yvs~~~ir~-------~~lr~gd~v~g~~r~~~~~ 114 (427)
T 3l0o_A 58 GEGVLEIH--PEGFGFLRRIEDNLLPSNDDIYISPSQIRK-------FNLNTGDIISGVIRKPKEG 114 (427)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCSSCEEECHHHHHH-------TTCCTTCEEEEEEECCCSS
T ss_pred EEEEEEEc--CCCceEeeCCccCCCCCCCCeeeCHHHHHh-------cCCCCCCEEEEEEeCCCCC
Confidence 35776554 5799999976 357899999999994 3589999999988876655
No 59
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=74.43 E-value=6.2 Score=32.80 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=36.4
Q ss_pred eeeeeEEEEEEcCCCee-EEecC-CCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATP-SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~-d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.. ..|| |+..+ ..+-+-++|+|++.....+.--..++.||.|...|..-+
T Consensus 17 ~iv~G~V~~i---~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd 76 (175)
T 2a19_A 17 DIVMVNVQQI---AEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVD 76 (175)
T ss_dssp CEEEEEEEEE---ETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEE
T ss_pred CEEEEEEEEE---ecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEE
Confidence 4567999876 4588 55554 257899999999974321112245899999999887643
No 60
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=74.41 E-value=6.4 Score=32.99 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=36.1
Q ss_pred eeeeeEEEEEEcCCCee-EEecC-CCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATP-SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~-d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.. ..|| |+..+ ..+-+=++|+|++.....+.--..++.||.|...|..-+
T Consensus 17 ~iv~G~V~~I---~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD 76 (182)
T 1kl9_A 17 DVVMVNVRSI---AEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVD 76 (182)
T ss_dssp CEEEEEEEEE---CSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEE
T ss_pred CEEEEEEEEE---eccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEE
Confidence 4567999886 4588 55553 357899999999964321111245899999999887643
No 61
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=73.74 E-value=1.4 Score=32.50 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=37.3
Q ss_pred eeeeeEEEEEEcCCCee-EEecCC-CCccEEEEec-cccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATPS-SNEDVFVHSK-RIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~d-~~~dVF~H~s-~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+ . ..|| |+.-.+ ++.+-++|+| ++....-..--..+ .||.|...+..-+
T Consensus 13 ~~~~G~V~-v---~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd 71 (88)
T 1luz_A 13 DVIKGRVY-E---KDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVD 71 (88)
T ss_dssp CEEEEEEE-E---ETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred CEEEEEEE-E---EccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEE
Confidence 45679998 6 3488 666655 3789999999 98632100001235 9999999887754
No 62
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=73.62 E-value=9.5 Score=34.01 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=44.9
Q ss_pred eeeeeeEEEEeeCCCceE-EEeCCC-CCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCC--CCceEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYG-FIATPS-SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD--KGHEAINVT 101 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfG-FI~~~d-~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~--kG~~A~~V~ 101 (282)
...+.|+|+.... || ||..++ .+-+-|+|+|.|....-+.--..++.||.|...+..-+ ++.....+.
T Consensus 12 Gdiv~G~V~~I~~---fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk 83 (275)
T 3aev_A 12 GEFVVATVKRIHN---YGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLR 83 (275)
T ss_dssp TCEEEEEEEEEET---TEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCEEEEEEEEEEC---cEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 4557899998843 55 666664 57899999999964310001246899999999986543 454443333
No 63
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=72.68 E-value=9.6 Score=32.72 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=39.9
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccC---Ccccc-------cCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN---PRKLY-------KTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~---~r~g~-------~~l~~Gd~V~F~i~~~~ 259 (282)
+.+.|+|+... .||+...-+. .|.|+|++.+.+.- +.... ..++.||.|.+.|..-+
T Consensus 85 ev~~G~V~~vt---~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd 151 (215)
T 2b8k_G 85 EVVDGTVVSCS---QHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (215)
T ss_dssp EEEEEEEEEEE---TTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe---cceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEE
Confidence 55779998875 3888776655 89999999996320 00000 34889999999887643
No 64
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=72.31 E-value=10 Score=34.49 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=41.1
Q ss_pred eeeeeEEEEEEcCCCee-EEecCC-CCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATPS-SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~d-~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.... || ||.-.+ .+-+-|+|+|++.....+.-...++.||.|...|..-+
T Consensus 15 ~iv~G~V~~I~~---fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD 74 (308)
T 1q8k_A 15 DVVMVNVRSIQE---MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVD 74 (308)
T ss_dssp CEEEEEEEEEET---TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEE
T ss_pred CEEEEEEEEEeC---cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEe
Confidence 457799998853 78 555543 57899999999964321112245899999999987754
No 65
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=72.21 E-value=6.6 Score=32.16 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=39.2
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccC---Cccc-------ccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN---PRKL-------YKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~---~r~g-------~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.... ||+...-+. .|.|+|+|.+.+.- +... -..++.||.|.+.+..-+
T Consensus 85 ev~~G~V~~v~~---fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (171)
T 1y14_B 85 EVVDGTVVSCSQ---HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (171)
T ss_dssp CEEEEEEEEEET---TEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEec---CEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEE
Confidence 457799998753 887766554 89999999985320 0000 044889999999887643
No 66
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=72.05 E-value=16 Score=35.64 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=51.1
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCC--------Ccccc-cCCCCCCEEEEEEEeCCCCceEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN--------PRKLY-KTLAEGETVEFDIMQGDKGHEAINVT 101 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~--------~~~g~-~~l~~Gd~V~f~v~~~~kG~~A~~V~ 101 (282)
..-+.|+|+---+--+--||.-.. +.+-|+|++++...- ..... ..|++||.|...|...+.|-....++
T Consensus 46 GnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~lT 124 (517)
T 2bx2_L 46 ANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 124 (517)
T ss_dssp TCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCEEE
T ss_pred CCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCceEE
Confidence 446899999998877789999865 678999999985320 00001 34899999999999987665554454
No 67
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.50 E-value=3.4 Score=39.23 Aligned_cols=54 Identities=24% Similarity=0.534 Sum_probs=41.6
Q ss_pred eeeEEEEEEcCCCeeEEecC-----CCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCce
Q psy547 201 VCGVVKWFSVKSGYGFIATP-----SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQ 263 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~-----d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~ 263 (282)
..|++--. ..||||+... .+..||||..+.++. ..|..||.|+=.+..-..+.+
T Consensus 54 ~~g~le~~--~~g~gflr~~~~~~~~~~~d~yvs~~~ir~-------~~lr~gd~v~g~~r~~~~~ER 112 (422)
T 3ice_A 54 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRR-------FNLRTGDTISGKIRPPKEGER 112 (422)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEBCHHHHHH-------HTCCTTCEEEEEEECCCSSCC
T ss_pred EEEEEEEc--CCCceEeeCCCcCCCCCCCCeeeCHHHHHh-------cCCCCCCEEEEEEeCCCccch
Confidence 34776554 5799999975 357899999999994 358999999988887666533
No 68
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=69.28 E-value=5.3 Score=37.98 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=48.5
Q ss_pred eeeeEEEEeeCCCceEEEeCC-----CCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCC---ceEEEEeCCC
Q psy547 33 KVCGVVKWFSVKSGYGFIATP-----SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG---HEAINVTGPD 104 (282)
Q Consensus 33 ~~~G~Vkwfn~~kGfGFI~~~-----d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG---~~A~~V~~~~ 104 (282)
...|.+.-- ..||||+.+. .+..||||..+.++.. .|+.||.|+=.+..-..| ..-..|..++
T Consensus 57 ~~~g~le~~--~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~-------~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vn 127 (427)
T 3l0o_A 57 FGEGVLEIH--PEGFGFLRRIEDNLLPSNDDIYISPSQIRKF-------NLNTGDIISGVIRKPKEGEKYFAMIKIEAIN 127 (427)
T ss_dssp EEEEEEEEC--TTSCEEEECGGGTTCCCSSCEEECHHHHHHT-------TCCTTCEEEEEEECCCSSSCSEEEEEEEEET
T ss_pred eEEEEEEEc--CCCceEeeCCccCCCCCCCCeeeCHHHHHhc-------CCCCCCEEEEEEeCCCCCcccccceEEEecC
Confidence 356777655 5799999987 3678999999999874 579999999988765444 3445666666
Q ss_pred C
Q psy547 105 G 105 (282)
Q Consensus 105 ~ 105 (282)
+
T Consensus 128 g 128 (427)
T 3l0o_A 128 Y 128 (427)
T ss_dssp T
T ss_pred C
Confidence 5
No 69
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=69.13 E-value=5.3 Score=40.71 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=39.3
Q ss_pred eeeeEEEEeeCCCce--EEEeCCCCCCcEEEEe-eccccCCCcccccCCCCCCEEEEEEEeC
Q psy547 33 KVCGVVKWFSVKSGY--GFIATPSSNEDVFVHS-KRIKYNNPRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 33 ~~~G~Vkwfn~~kGf--GFI~~~d~~~dvF~H~-s~l~~~~~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
.++|++.- ..+|| |||.+++..+|||++- .++... -.||.|..++...
T Consensus 32 l~~G~l~~--~~~~~~~gfv~~~~~~~di~I~~~~~~n~A---------~~GD~V~V~i~~~ 82 (760)
T 2vnu_D 32 LYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNRA---------FNGDQVIVELLPQ 82 (760)
T ss_dssp EEEEEEEE--CSSBTTEEEECCSSSSSCEEEESHHHHTTC---------CTTCEEEEEECCG
T ss_pred EEEEEEEE--ecCCCccEEEEcCCCCCCEEEcChhhhccc---------cCCCEEEEEEecc
Confidence 47898876 37899 9999998789999997 777654 6999999998643
No 70
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=68.41 E-value=7.6 Score=31.81 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=36.8
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCC---Cccc---c----cCCCCCCEEEEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN---PRKL---Y----KTLAEGETVEFDIMQ 90 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~---~~~g---~----~~l~~Gd~V~f~v~~ 90 (282)
.+.+.|+|+.-.. ||+-..-.. .|.|+|+|.|...- +... + ..++.||.|.+.+..
T Consensus 84 Gev~~G~V~~v~~---fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (171)
T 1y14_B 84 GEVVDGTVVSCSQ---HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (171)
T ss_dssp TCEEEEEEEEEET---TEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEE
T ss_pred CCEEEEEEEEEec---CEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEE
Confidence 4557899998764 676554444 89999999985320 0000 0 348889999998754
No 71
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=66.99 E-value=9.8 Score=32.68 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=37.9
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCC---Ccccc-------cCCCCCCEEEEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN---PRKLY-------KTLAEGETVEFDIMQ 90 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~---~~~g~-------~~l~~Gd~V~f~v~~ 90 (282)
.+.+.|+|+.-.. ||+...-.. .|.|+|+|.|...- +.... ..++.||.|.+.+..
T Consensus 84 Gev~~G~V~~vt~---fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 84 GEVVDGTVVSCSQ---HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEG 149 (215)
T ss_dssp TEEEEEEEEEEET---TEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEE
T ss_pred CCEEEEEEEEEec---ceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEE
Confidence 4557899998763 676555444 89999999995320 00000 348899999999765
No 72
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=66.70 E-value=15 Score=32.73 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=40.6
Q ss_pred eeeeeEEEEEEcCCCee-EEecCC-CCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATPS-SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~d-~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+... .|| |+..++ .+-+-|+|+|++.......-...++.||.|...+..-+
T Consensus 13 div~G~V~~I~---~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD 72 (275)
T 3aev_A 13 EFVVATVKRIH---NYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVD 72 (275)
T ss_dssp CEEEEEEEEEE---TTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEE---CcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEE
Confidence 45679998874 377 555543 57899999999974321111245899999999987644
No 73
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=65.96 E-value=41 Score=25.47 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=37.3
Q ss_pred ceeeeeeeeEEEEeeCCCceE-EEeCCCCCCcEEEEeecccc----CCCcccccCCCCCCEEEEEEEeCCC
Q psy547 28 VVLATKVCGVVKWFSVKSGYG-FIATPSSNEDVFVHSKRIKY----NNPRKLYKTLAEGETVEFDIMQGDK 93 (282)
Q Consensus 28 ~~~~~~~~G~Vkwfn~~kGfG-FI~~~d~~~dvF~H~s~l~~----~~~~~g~~~l~~Gd~V~f~v~~~~k 93 (282)
....+.+.|+|+.. .-|| ||+-.....+.|+|.+.... .. --..++.||.|.+.+..-+.
T Consensus 19 l~~G~i~~G~V~~v---~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 19 LKPGMLLTGTVSSL---EDHGYLVDIGVDGTRAFLPLLKAQEYIRQKN---KGAKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp CCTTCEEEEEEEEE---CSSEEEEECCCSSCEEEEEHHHHHHHHHHHS---SSCCCCTTCEEEEEEEECCT
T ss_pred CCCCCEEEEEEEEE---eCceEEEEECCCCeEEEEEEecccccccccC---ccCEeCCCCEEEEEEEEEeC
Confidence 33456689999998 3467 66655234555554444311 01 02579999999999877543
No 74
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=64.08 E-value=6.6 Score=28.38 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=39.1
Q ss_pred eeeeEEEEeeCCCceEEEeCCCCC--------CcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEe
Q psy547 33 KVCGVVKWFSVKSGYGFIATPSSN--------EDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVT 101 (282)
Q Consensus 33 ~~~G~Vkwfn~~kGfGFI~~~d~~--------~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~ 101 (282)
..+|+|+..|...+- |+-.-+. --.-|... .. .-+..|++||.|.|.+...+.++...++.
T Consensus 9 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~---~~---~~l~~lk~Gd~V~F~~~~~~~~~~it~i~ 77 (80)
T 2qcp_X 9 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTIT---PQ---TKMSEIKTGDKVAFNFVQQGNLSLLQDIK 77 (80)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECC---TT---CEECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEEcCCcccCCCCceEEEEEcc---Ch---hhhhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 478999999987764 4432111 11222222 11 12688999999999999888777666554
No 75
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=63.93 E-value=13 Score=30.82 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=39.6
Q ss_pred eeeeeeEEEEeeCCCceE-EEeCC-CCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeC--CCCceEEE
Q psy547 31 ATKVCGVVKWFSVKSGYG-FIATP-SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG--DKGHEAIN 99 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfG-FI~~~-d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~--~kG~~A~~ 99 (282)
...+.|+|+.. .-|| ||.-+ ..+-+-|+|+|.|....-+.--..++.||.|...+..- .++.....
T Consensus 16 G~iv~G~V~~i---~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LS 85 (175)
T 2a19_A 16 DDIVMVNVQQI---AEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLS 85 (175)
T ss_dssp TCEEEEEEEEE---ETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEEE---ecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEE
Confidence 45578999877 3466 66664 25679999999996431111125689999999988654 34543333
No 76
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=63.50 E-value=16 Score=30.04 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=39.1
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCc-----------ccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPR-----------KLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r-----------~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+... .||+...-. ..+-|+|.+++....-. .--..++.||.|.+.+..-+
T Consensus 83 ev~~G~V~~v~---~~G~fV~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 150 (187)
T 1go3_E 83 ELIEGEVVDVV---EFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS 150 (187)
T ss_dssp CEEEEEEEEEE---TTEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe---CcEEEEEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEE
Confidence 44679999875 377665554 48999999998643100 11245899999999887643
No 77
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=63.05 E-value=7.8 Score=28.00 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=36.3
Q ss_pred eeeEEEEEEcCCCeeEEecCCCC--------ccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeE
Q psy547 201 VCGVVKWFSVKSGYGFIATPSSN--------EDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVL 268 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~~--------~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~ 268 (282)
.+|+|+..+...+- |+-..+. --.-|...+= ..+..|++||+|.|.+.....++.-..+.
T Consensus 10 ~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~~------~~l~~lk~Gd~V~F~~~~~~~~~~it~i~ 77 (80)
T 2qcp_X 10 ATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITPQ------TKMSEIKTGDKVAFNFVQQGNLSLLQDIK 77 (80)
T ss_dssp EEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCTT------CEECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEcCCCCE--EEEEcCCcccCCCCceEEEEEccCh------hhhhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 56999999866543 4433211 1122222211 12678999999999999888665544443
No 78
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=62.93 E-value=7 Score=28.81 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=39.5
Q ss_pred eeeeeEEEEeeCCCceEEEeCCCCC--------CcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCCceEEEEe
Q psy547 32 TKVCGVVKWFSVKSGYGFIATPSSN--------EDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVT 101 (282)
Q Consensus 32 ~~~~G~Vkwfn~~kGfGFI~~~d~~--------~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG~~A~~V~ 101 (282)
...+|+|+..|...+- |+-.-+. --.-|... .. .-+..|++||.|.|.+...+.++....|.
T Consensus 16 ~~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~---~~---~~l~~lk~Gd~V~F~~~~~~~~~~it~i~ 85 (88)
T 2vb2_X 16 ISATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTIT---PQ---TKMSEIKTGDKVAFNFVQQGNLSLLQDIK 85 (88)
T ss_dssp EEEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECC---TT---CEECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEEEEcCCCCE--EEEecCCcccCCCCceEEEEEcC---Ch---hhhhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 3579999999987764 4332111 11222222 11 12688999999999999888777666554
No 79
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=62.47 E-value=7.9 Score=28.53 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=37.0
Q ss_pred eeeeEEEEEEcCCCeeEEecCCCC--------ccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeE
Q psy547 200 KVCGVVKWFSVKSGYGFIATPSSN--------EDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVL 268 (282)
Q Consensus 200 ~~~G~Vk~fn~~kGfGFI~~~d~~--------~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~ 268 (282)
..+|+|+..+...+- |+-..+. --.-|...+= ..+..|++||+|.|.+.....++.-..+.
T Consensus 17 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~~------~~l~~lk~Gd~V~F~~~~~~~~~~it~i~ 85 (88)
T 2vb2_X 17 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITPQ------TKMSEIKTGDKVAFNFVQQGNLSLLQDIK 85 (88)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCTT------CEECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEecCCcccCCCCceEEEEEcCCh------hhhhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 357999999866543 4433211 1122222211 12678999999999999888665544443
No 80
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=61.98 E-value=20 Score=29.63 Aligned_cols=75 Identities=9% Similarity=0.016 Sum_probs=45.8
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCC----------CccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCCceeeeeE
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSS----------NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFVL 268 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~----------~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG~~A~~V~ 268 (282)
....|+|+... .||+...-.. +-+=++|++++....-..-...+++||.|...+.. +.-....+
T Consensus 59 diV~G~V~~V~---~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~---~~i~LS~k 132 (179)
T 3m7n_A 59 DVVLGRVVDLR---NSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG---DNLRLSTK 132 (179)
T ss_dssp CEEEEEEEEEC---SSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE---TTTEEECC
T ss_pred CEEEEEEEEEe---CCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC---CeEEEEEe
Confidence 34568888763 3443332222 67899999999754222224569999999999997 32222222
Q ss_pred -ecceeeeeeee
Q psy547 269 -KNIVLYFSFVP 279 (282)
Q Consensus 269 -~~~~~~~~~~~ 279 (282)
..+..-++.|+
T Consensus 133 ~~~lGvv~a~~~ 144 (179)
T 3m7n_A 133 EEEMGVLRALCS 144 (179)
T ss_dssp STTCEEEECBCT
T ss_pred cCCCCEEEeccc
Confidence 44555555554
No 81
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=61.84 E-value=8.8 Score=27.89 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=37.6
Q ss_pred eeeEEEEeeCCCceEEEeCC-CC-------CCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCC-CceEEEEeC
Q psy547 34 VCGVVKWFSVKSGYGFIATP-SS-------NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK-GHEAINVTG 102 (282)
Q Consensus 34 ~~G~Vkwfn~~kGfGFI~~~-d~-------~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~k-G~~A~~V~~ 102 (282)
.+|+|+..|... |+-. +. .--.-|... ... -+..|++||.|.|++...+. ++....|..
T Consensus 6 ~~G~V~~vd~~~----iTi~H~pI~~l~wPaMTM~F~v~---~~~---~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~ 73 (82)
T 2l55_A 6 AVGRIQSIGERS----LIIAHEAIPSAQWGAMTMEFAAP---PAG---LPQGLKAGDRVAFSFRLDPHGMATLVTVAP 73 (82)
T ss_dssp EEEEEEECCSSE----EEEEECCCTTTTCCCEEEEEECC---TTC---CCSSCSTTCEEEEEEEEETTTEEEEEEEEE
T ss_pred EeEEEEEEcccc----EEEecCCccccCCCceEEEEEcC---Chh---HhhcCCCCCEEEEEEEECCCCeEEEEEEEe
Confidence 589999998775 4432 11 111222222 111 26789999999999999887 477666664
No 82
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=61.46 E-value=27 Score=28.56 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=40.3
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCC-----------cccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP-----------RKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~-----------r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+..+. ||+-...+ .-+-++|.+.+..+.- +..-..++.||.|.+.+..-+
T Consensus 83 ev~~G~V~~v~~---~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~ 150 (180)
T 4ayb_E 83 EVVEGEVLQVDN---YGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVA 150 (180)
T ss_dssp CEEEEEEEEEET---TEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEEC
T ss_pred CEEEEEEeeecc---ceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEe
Confidence 446799988753 77666655 5789999999975421 011235999999999998644
No 83
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=58.51 E-value=11 Score=38.43 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=37.0
Q ss_pred eeeEEEEEEcCCCe--eEEecCCCCccEEEEe-ccccccCCcccccCCCCCCEEEEEEEE
Q psy547 201 VCGVVKWFSVKSGY--GFIATPSSNEDVFVHS-KRIKYNNPRKLYKTLAEGETVEFDIMQ 257 (282)
Q Consensus 201 ~~G~Vk~fn~~kGf--GFI~~~d~~~dVF~H~-s~l~~~~~r~g~~~l~~Gd~V~F~i~~ 257 (282)
++|++.- ..+|| ||+..++..+|||++- .++. ..-.||.|...+..
T Consensus 33 ~~G~l~~--~~~~~~~gfv~~~~~~~di~I~~~~~~n---------~A~~GD~V~V~i~~ 81 (760)
T 2vnu_D 33 YQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLN---------RAFNGDQVIVELLP 81 (760)
T ss_dssp EEEEEEE--CSSBTTEEEECCSSSSSCEEEESHHHHT---------TCCTTCEEEEEECC
T ss_pred EEEEEEE--ecCCCccEEEEcCCCCCCEEEcChhhhc---------cccCCCEEEEEEec
Confidence 5688765 36889 9999988789999997 6665 34699999999864
No 84
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=57.92 E-value=11 Score=39.43 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=39.1
Q ss_pred eeeeeEEEEeeCCCce--EEEeCCCCCCcEEEEe-eccccCCCcccccCCCCCCEEEEEEEe
Q psy547 32 TKVCGVVKWFSVKSGY--GFIATPSSNEDVFVHS-KRIKYNNPRKLYKTLAEGETVEFDIMQ 90 (282)
Q Consensus 32 ~~~~G~Vkwfn~~kGf--GFI~~~d~~~dvF~H~-s~l~~~~~~~g~~~l~~Gd~V~f~v~~ 90 (282)
..++|++.- ..+|| |||.+++.++||||+- .++... -.||.|..++..
T Consensus 248 ~l~~G~l~v--~~~~~~egfV~~~~~~~DI~I~~~~~~n~A---------~~GD~V~V~i~~ 298 (977)
T 2wp8_J 248 VLYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNRA---------FNGDQVIVELLP 298 (977)
T ss_dssp SSEEEEEEE--CSSBTTEEEECCTTCSSCEEEESHHHHTTC---------CTTCEEEEEECC
T ss_pred CEEEEEEEE--ccCCCccEEEEcCCCCCCEEEcChHHhhhC---------cCCCEEEEEEec
Confidence 347887775 47999 9999998889999997 677654 699999999854
No 85
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=57.44 E-value=12 Score=30.51 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=37.9
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccC---Ccc---------cccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN---PRK---------LYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~---~r~---------g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+... .||+...-+. -+.|+|++.+.+.- +.. .-..++.||.|.+.+..-+
T Consensus 83 ev~~G~V~~v~---~fG~fV~l~~-~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 151 (172)
T 2c35_B 83 EVVDAVVTQVN---KVGLFTEIGP-MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR 151 (172)
T ss_dssp CEEEEEEEEEE---TTEEEEEETT-EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe---CCEEEEEECC-EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEE
Confidence 45679998875 4787665554 45999999885320 000 0124889999999987643
No 86
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=57.08 E-value=6.2 Score=37.48 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=41.8
Q ss_pred eeeeEEEEeeCCCceEEEeCC-----CCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCC
Q psy547 33 KVCGVVKWFSVKSGYGFIATP-----SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 94 (282)
Q Consensus 33 ~~~G~Vkwfn~~kGfGFI~~~-----d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG 94 (282)
...|.+.-- ..||||+.+. .+..||||..+.++.. .|+.||.|.=.+..-..+
T Consensus 53 ~~~g~le~~--~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~-------~lr~gd~v~g~~r~~~~~ 110 (422)
T 3ice_A 53 FGDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRF-------NLRTGDTISGKIRPPKEG 110 (422)
T ss_dssp EEEEEEEEC--TTSCEEEECGGGTTCCCTTCEEBCHHHHHHH-------TCCTTCEEEEEEECCCSS
T ss_pred EEEEEEEEc--CCCceEeeCCCcCCCCCCCCeeeCHHHHHhc-------CCCCCCEEEEEEeCCCcc
Confidence 356777665 5799999985 3678999999999874 679999999988765444
No 87
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=54.58 E-value=14 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=21.3
Q ss_pred ccCCCCCCEEEEEEEEcCC-CceeeeeE
Q psy547 242 YKTLAEGETVEFDIMQGDK-GNQFCFVL 268 (282)
Q Consensus 242 ~~~l~~Gd~V~F~i~~~~k-G~~A~~V~ 268 (282)
+..|++||+|.|++...+. ++.-+.+.
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~ 72 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVA 72 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999999887 45544544
No 88
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=52.33 E-value=13 Score=30.53 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=38.1
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcc-----------cccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRK-----------LYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~-----------g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.... ||+-..-+. -+.|+|.+.+.+.. .. .-..++.||.|.+.+..-+
T Consensus 86 ev~~G~V~~v~~---fG~FV~l~~-~~glVh~s~l~~~~-~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd 152 (172)
T 3h0g_G 86 EVVDAIVTTVNK---MGFFANIGP-LNVFVSSHLVPPDM-KFDPTANPPNYSGEDQVIEKGSNVRLKIVGTR 152 (172)
T ss_dssp CEEECCCCEEET---TEEECCBTT-BCCEEEGGGSCTTC-CCBSSSSSCBEESSSCEECSSCCEEEEEEEEE
T ss_pred CEEEEEEEEEEc---ceEEEEeCC-eEEEEEHHHCCCcc-ccCcccccceEecCCcEECCCCEEEEEEEEEE
Confidence 345688887753 888776654 45999999995321 00 0135899999999987644
No 89
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=48.95 E-value=7.7 Score=34.40 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=40.0
Q ss_pred eeeeeEEEEEEcCCCee-EEecCC-CCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYG-FIATPS-SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfG-FI~~~d-~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+... .|| |+...+ .+.+-|+|+|++.....+.--..++.||.|...+..-+
T Consensus 13 ~iv~G~V~~I~---~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd 72 (266)
T 3cw2_C 13 EILIATVKQVF---DYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVD 72 (266)
T ss_dssp CEEEEEEEECC---SSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCC
T ss_pred CEEEEEEEEEe---ccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEe
Confidence 45779998863 377 555543 57899999999974321111134899999999988765
No 90
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=48.44 E-value=18 Score=29.49 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=35.2
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCC---Ccc---------cccCCCCCCEEEEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN---PRK---------LYKTLAEGETVEFDIMQ 90 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~---~~~---------g~~~l~~Gd~V~f~v~~ 90 (282)
.+.+.|+|+.-. -||+...-. .-+.|+|+|.|...- +.. .-..++.||.|.+.+..
T Consensus 82 Gev~~G~V~~v~---~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (172)
T 2c35_B 82 GEVVDAVVTQVN---KVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 149 (172)
T ss_dssp TCEEEEEEEEEE---TTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEE
T ss_pred CCEEEEEEEEEe---CCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEE
Confidence 455789988875 356554444 446999999885310 000 01247889999998754
No 91
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=47.35 E-value=37 Score=27.83 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=36.4
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCc-----------ccccCCCCCCEEEEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPR-----------KLYKTLAEGETVEFDIMQ 90 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~-----------~g~~~l~~Gd~V~f~v~~ 90 (282)
...+.|+|+.-.. ||+...-. .-+-|+|.|.+....-. ..-..++.||.|.+.+..
T Consensus 82 Gev~~G~V~~v~~---~G~fV~l~-~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 148 (187)
T 1go3_E 82 YELIEGEVVDVVE---FGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVA 148 (187)
T ss_dssp TCEEEEEEEEEET---TEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEE
T ss_pred CCEEEEEEEEEeC---cEEEEEEc-CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEE
Confidence 3457899998763 45444333 47999999998642100 002458899999998754
No 92
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=45.90 E-value=52 Score=26.76 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=37.1
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCC-----------cccccCCCCCCEEEEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP-----------RKLYKTLAEGETVEFDIMQ 90 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~-----------~~g~~~l~~Gd~V~f~v~~ 90 (282)
..-+.|+|+.-+. ||+-.... .-|-++|.|.+..+.- +..-..++.||.|.+.+..
T Consensus 82 Gev~~G~V~~v~~---~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~ 148 (180)
T 4ayb_E 82 QEVVEGEVLQVDN---YGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVIS 148 (180)
T ss_dssp TCEEEEEEEEEET---TEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEE
T ss_pred CCEEEEEEeeecc---ceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEE
Confidence 3456788887753 45544443 5799999999976410 0011358999999999854
No 93
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=44.71 E-value=14 Score=30.22 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=34.5
Q ss_pred eeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCC-cc---------cccCCCCCCEEEEEEEe
Q psy547 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP-RK---------LYKTLAEGETVEFDIMQ 90 (282)
Q Consensus 32 ~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~-~~---------g~~~l~~Gd~V~f~v~~ 90 (282)
..+.|+|+.-+. ||+-..-+ .-+.|+|+|.|...-. .+ .-..++.||.|.+.+..
T Consensus 86 ev~~G~V~~v~~---fG~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~ 150 (172)
T 3h0g_G 86 EVVDAIVTTVNK---MGFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVG 150 (172)
T ss_dssp CEEECCCCEEET---TEEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEE
T ss_pred CEEEEEEEEEEc---ceEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEE
Confidence 346677776643 77665554 4569999999943200 00 01357899999998754
No 94
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=44.40 E-value=25 Score=36.90 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=36.8
Q ss_pred eeeEEEEEEcCCCe--eEEecCCCCccEEEEe-ccccccCCcccccCCCCCCEEEEEEEE
Q psy547 201 VCGVVKWFSVKSGY--GFIATPSSNEDVFVHS-KRIKYNNPRKLYKTLAEGETVEFDIMQ 257 (282)
Q Consensus 201 ~~G~Vk~fn~~kGf--GFI~~~d~~~dVF~H~-s~l~~~~~r~g~~~l~~Gd~V~F~i~~ 257 (282)
++|++.- ..+|| ||+.+++..+|||++- .++. ..-.||.|..++..
T Consensus 250 ~~G~l~v--~~~~~~egfV~~~~~~~DI~I~~~~~~n---------~A~~GD~V~V~i~~ 298 (977)
T 2wp8_J 250 YQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLN---------RAFNGDQVIVELLP 298 (977)
T ss_dssp EEEEEEE--CSSBTTEEEECCTTCSSCEEEESHHHHT---------TCCTTCEEEEEECC
T ss_pred EEEEEEE--ccCCCccEEEEcCCCCCCEEEcChHHhh---------hCcCCCEEEEEEec
Confidence 5677754 47889 9999988889999997 6665 34699999999864
No 95
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=43.89 E-value=7.3 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCCEEEEEEEEcCCCceeeeeEecce
Q psy547 247 EGETVEFDIMQGDKGNQFCFVLKNIV 272 (282)
Q Consensus 247 ~Gd~V~F~i~~~~kG~~A~~V~~~~~ 272 (282)
.|-.|+|.|..++++..|+.|.++++
T Consensus 50 ~g~aVTFrV~~N~~n~taadVA~~a~ 75 (99)
T 4hti_A 50 LGPAVTFKVSANVQNVTTEDVEKATV 75 (99)
T ss_dssp ETTEEEEEECCCTTCCCHHHHHHHHH
T ss_pred cCceEEEEeccCCCCCCHHHHHHHHH
Confidence 35579999999999999999887654
No 96
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=40.53 E-value=1.1e+02 Score=22.86 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred eeeeeEEEEEEcCCCeeEEecCC-CCccEEEEeccccc----cCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPS-SNEDVFVHSKRIKY----NNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d-~~~dVF~H~s~l~~----~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.. ..||++..-+ .+...|.|.+.... ..+ -..++.||.|.+.|..-+
T Consensus 23 ~i~~G~V~~v---~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 23 MLLTGTVSSL---EDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNK---GAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CEEEEEEEEE---CSSEEEEECCCSSCEEEEEHHHHHHHHHHHSS---SCCCCTTCEEEEEEEECC
T ss_pred CEEEEEEEEE---eCceEEEEECCCCeEEEEEEecccccccccCc---cCEeCCCCEEEEEEEEEe
Confidence 5578999887 4688544444 45555555554321 011 246999999999988754
No 97
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=38.71 E-value=79 Score=27.50 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=40.1
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCC---cccccCCCCCCEEEEEEEEcCC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP---RKLYKTLAEGETVEFDIMQGDK 260 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~---r~g~~~l~~Gd~V~F~i~~~~k 260 (282)
....|+|... ..||+...-+..-+-++|++++..... ..-...|++||.|...|..-.+
T Consensus 76 DiV~G~V~~v---~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 76 DIVIGLVEDV---EIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp CEEEEEEEEE---CSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred CEEEEEEEEE---eCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 3456899876 345665555657899999999984311 1112369999999998876543
No 98
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=38.52 E-value=15 Score=32.57 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=44.9
Q ss_pred eeeeeeeEEEEeeCCCceE-EEeCCC-CCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCC--CCceEEEEe
Q psy547 30 LATKVCGVVKWFSVKSGYG-FIATPS-SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD--KGHEAINVT 101 (282)
Q Consensus 30 ~~~~~~G~Vkwfn~~kGfG-FI~~~d-~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~--kG~~A~~V~ 101 (282)
....+.|+|+...+ || ||..++ .+-+-|+|+|++....-+.--..++.||.|...+..-+ +|.......
T Consensus 11 vG~iv~G~V~~I~~---~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk 83 (266)
T 3cw2_C 11 EGEILIATVKQVFD---YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLK 83 (266)
T ss_dssp TTCEEEEEEEECCS---SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEEST
T ss_pred CCCEEEEEEEEEec---cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 34568899998843 55 666653 56799999999964310000134899999999987654 444333333
No 99
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=37.10 E-value=62 Score=28.17 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=39.3
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCC---cccccCCCCCCEEEEEEEeCCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP---RKLYKTLAEGETVEFDIMQGDK 93 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~---~~g~~~l~~Gd~V~f~v~~~~k 93 (282)
...+.|+|.--... .-|+.- +..-+-++|++++..... ..-...|++||.|...+..-..
T Consensus 75 GDiV~G~V~~v~~~--ga~VdI-~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 75 NDIVIGLVEDVEIY--GWVVDI-KAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp TCEEEEEEEEECSS--EEEEEC-SSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred CCEEEEEEEEEeCc--eEEEEc-CCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 45577888876432 345554 346789999999985310 0012379999999999876543
No 100
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=33.99 E-value=1.4e+02 Score=25.53 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=40.4
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEecccccc-CCcccccCCCCCCEEEEEEEEcCC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN-NPRKLYKTLAEGETVEFDIMQGDK 260 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~-~~r~g~~~l~~Gd~V~F~i~~~~k 260 (282)
....|+|..- ..+|+...-+...+-++|++++... ....-...|++||.|...+..-.+
T Consensus 59 DiV~G~V~~v---~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~ 118 (229)
T 2ba0_A 59 DVVIGIIREV---AANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP 118 (229)
T ss_dssp CEEEEEEEEE---CSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT
T ss_pred CEEEEEEEEE---eCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC
Confidence 3456888776 3456655556577899999999832 111223569999999998877543
No 101
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=33.56 E-value=76 Score=34.10 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=41.5
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccC-CcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN-PRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~-~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.. ..||....-+.+-+=+||+|++.... ...-...++.||.|...|..-+
T Consensus 904 ~iv~G~V~~V---~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 904 SIIPVRVERF---WHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYID 962 (1219)
T ss_dssp CEEEEEEEEE---CSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEE---ecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEE
Confidence 5578999876 44776665566889999999998542 0111245899999999887654
No 102
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=32.36 E-value=76 Score=25.95 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=38.6
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCC---------CCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEe
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPS---------SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d---------~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~ 90 (282)
..-+.|+|+--.. +| -||.-.. .+-+-++|+|++....-..-...+++||.|...+..
T Consensus 58 GdiV~G~V~~V~~-~g-a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 58 GDVVLGRVVDLRN-SI-ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp TCEEEEEEEEECS-SE-EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEEEeC-Cc-EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 5567888888743 22 2444322 156889999999764211124579999999999987
No 103
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=32.00 E-value=90 Score=28.63 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=38.0
Q ss_pred eeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeC
Q psy547 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 32 ~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
..++|+|+..+ ++.=||.. ++-+-++|.+.+.. -..++.||+|.+.+..-
T Consensus 136 eIV~G~V~ri~--~~~v~VDl--Gk~EgiLp~sE~ip------~E~~~vGD~Vkv~V~~V 185 (344)
T 1hh2_P 136 TVTTAEVIRVM--GEWADIRI--GKLETRLPKKEWIP------GEEIKAGDLVKVYIIDV 185 (344)
T ss_dssp CEEEEEEEEEC--SSEEEEEE--TTEEEEEEGGGSCT------TCCCCTTCEEEEEEEEE
T ss_pred CEEEEEEEEEe--cCcEEEEe--CCeEEEEeHHHcCC------CcCCCCCCEEEEEEEEE
Confidence 35899999985 55445544 47799999999964 25889999999887643
No 104
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=27.82 E-value=56 Score=28.48 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=23.5
Q ss_pred eeeEEEEEEcCCCeeEEe---cCCCCccEEEEecccc
Q psy547 201 VCGVVKWFSVKSGYGFIA---TPSSNEDVFVHSKRIK 234 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~---~~d~~~dVF~H~s~l~ 234 (282)
..|+|.......+||... ..++-.-+|-|++.+.
T Consensus 100 ~~G~V~~~g~~~~~G~~ViI~Hg~G~~t~Y~HL~~i~ 136 (245)
T 3tuf_B 100 LSGTVVKAEKDPVLGYVVEVEHADGLSTVYQSLSEVS 136 (245)
T ss_dssp SCEEEEEEEEETTTEEEEEEECSTTEEEEEEEESEES
T ss_pred cCeEEEEEEecCCCceEEEEEeCCCEEEEEecCCccc
Confidence 458888887777888644 3333446899998765
No 105
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=27.06 E-value=1.6e+02 Score=25.06 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=39.9
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccC--C--cccccCCCCCCEEEEEEEEcCC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN--P--RKLYKTLAEGETVEFDIMQGDK 260 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~--~--r~g~~~l~~Gd~V~F~i~~~~k 260 (282)
....|+|..-. .+|+...-+..-+-++|++++.... + ..-...+++||.|...+..-.+
T Consensus 68 DiV~G~V~~v~---~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 68 DVVIGLIQSVG---IMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp CCEEEEEEEEC---SSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred CEEEEEEEEEe---CCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 34568998763 3555555555789999999997410 0 1112369999999998877554
No 106
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=26.64 E-value=2e+02 Score=23.54 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=40.1
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCC-CCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCC
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSS-NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 93 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~-~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~k 93 (282)
...+.|+|.-- +++++...-.. ..+.++|++++..... .-...|.+||-|..++..-..
T Consensus 8 gDvViG~V~~v---~~~~~~VdI~~~~~~a~L~~s~~~g~~k-~~r~~l~~GDlV~ArV~~~~~ 67 (175)
T 2ja9_A 8 NDFVIGVIIGT---FSDSYKVSLQNFSSSVSLSYMAFPNASK-KNRPTLQVGDLVYARVCTAEK 67 (175)
T ss_dssp TCEEEEEEEEE---CSSEEEEESSTTSCCEEEETTSSTTCCS-SSCCCCCTTCEEEEEEEECCT
T ss_pred cCEEEEEEEEE---ECcEEEEEECCCCccEEEEHHHCCchhh-hhhccCCCCCEEEEEEEEecC
Confidence 44567888754 33444444444 6899999999985421 224679999999999876544
No 107
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=26.50 E-value=29 Score=35.52 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=38.8
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEc
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~ 258 (282)
..+.|+|+.. ..||....-+.+.+-++|+|++.+.....-...++.||.|...|..-
T Consensus 656 ~iv~G~V~~V---~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~V 712 (785)
T 3bzc_A 656 MVLEGVVTNV---TNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEV 712 (785)
T ss_dssp CBCCCEEEEE---ETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEE
T ss_pred CEEEEEEEEE---ecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEE
Confidence 5578999887 34785554455789999999997431000013488999998877654
No 108
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=26.01 E-value=14 Score=37.42 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.. ..||....-..+.+-|+|+|++.......--..++.||.|...+..-+
T Consensus 629 ~i~~G~V~~i---~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd 686 (723)
T 3cdi_A 629 RVYTGKVTRI---VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 686 (723)
T ss_dssp -------------------------------------------------------------
T ss_pred cEEEEEEEEE---ecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEEC
Confidence 5568999876 458955544557899999999974321111235899999999887644
No 109
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=25.43 E-value=33 Score=24.45 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=19.1
Q ss_pred eeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccc
Q psy547 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67 (282)
Q Consensus 31 ~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~ 67 (282)
..+++|+|+|||.- =.+-.+ + ...++-..++.
T Consensus 31 G~~l~G~I~~fD~f---~vlL~~-~-~~~LIYKhAIs 62 (74)
T 2ylb_A 31 GIKLQGQIESFDQF---VILLKN-T-VSQMVYKHAIS 62 (74)
T ss_dssp SCEEEEEEEEECSS---EEEEES-S-SEEEEEGGGEE
T ss_pred CCEEEEEEEEECCc---EEEEEC-C-ceEEEEeeeEE
Confidence 56789999999753 222222 2 55666555553
No 110
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=25.19 E-value=61 Score=29.57 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=23.8
Q ss_pred eeeEEEEEEcCCCeeEEe---cCCCCccEEEEecccc
Q psy547 201 VCGVVKWFSVKSGYGFIA---TPSSNEDVFVHSKRIK 234 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~---~~d~~~dVF~H~s~l~ 234 (282)
..|+|.......+||-.. ..++-.-+|.|++.+.
T Consensus 249 ~~G~V~~~~~~~~~G~~v~i~h~~g~~t~Y~hl~~~~ 285 (361)
T 2gu1_A 249 GDGKVIVVRKHPYAGNYLVIEHNSVYKTRYLHLDKIL 285 (361)
T ss_dssp SSEEEEEEEEETTTEEEEEEECSSSEEEEEEEESEEC
T ss_pred eCEEEEEeEEeCCCCeEEEEEECCCEEEEEeCcCccc
Confidence 468998877778888433 3344456899998764
No 111
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.29 E-value=2.3e+02 Score=24.08 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=40.2
Q ss_pred eeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCC-CcccccCCCCCCEEEEEEEeCCC
Q psy547 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN-PRKLYKTLAEGETVEFDIMQGDK 93 (282)
Q Consensus 30 ~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~-~~~g~~~l~~Gd~V~f~v~~~~k 93 (282)
....+.|+|.--... .-|+.- +...+-++|++++.... -..-...|++||.|...+..-..
T Consensus 57 ~GDiV~G~V~~v~~~--~a~V~I-~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~ 118 (229)
T 2ba0_A 57 VGDVVIGIIREVAAN--GWAVDI-YSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP 118 (229)
T ss_dssp TTCEEEEEEEEECSS--EEEEEC-SSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT
T ss_pred CCCEEEEEEEEEeCC--eEEEEe-CCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC
Confidence 355678888877433 345554 44678999999998421 00113579999999999876543
No 112
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=24.28 E-value=1.2e+02 Score=32.70 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=39.8
Q ss_pred eeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCC-CcccccCCCCCCEEEEEEEeC
Q psy547 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNN-PRKLYKTLAEGETVEFDIMQG 91 (282)
Q Consensus 30 ~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~-~~~g~~~l~~Gd~V~f~v~~~ 91 (282)
..+.+.|+|+-. .-||....-+.+-+-+||+|.|.... -......++.||.|...|..-
T Consensus 902 ~G~iv~G~V~~V---~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~V 961 (1219)
T 3psi_A 902 KGSIIPVRVERF---WHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYI 961 (1219)
T ss_dssp TTCEEEEEEEEE---CSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEEE---ecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 356688999965 33554443355779999999997541 000134589999999998754
No 113
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=23.09 E-value=39 Score=24.28 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.9
Q ss_pred eeeeeeEEEEeeC
Q psy547 31 ATKVCGVVKWFSV 43 (282)
Q Consensus 31 ~~~~~G~Vkwfn~ 43 (282)
..+++|+|+|||.
T Consensus 29 G~~l~G~I~~fD~ 41 (77)
T 1kq1_A 29 GFQMKGVIEEYDK 41 (77)
T ss_dssp SCEEEEEEEEECS
T ss_pred CCEEEEEEEEECC
Confidence 5678999999974
No 114
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=22.99 E-value=2.1e+02 Score=22.53 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=44.9
Q ss_pred eeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCCC-ceeeeeE
Q psy547 202 CGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG-NQFCFVL 268 (282)
Q Consensus 202 ~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~kG-~~A~~V~ 268 (282)
.|.|++-.....+=|...|+++..|-|+++-+.- ....+|+.|..+=.-.+.| ..|.+|.
T Consensus 43 ~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilP-------DlFrEGqgVVa~G~l~~~g~F~A~eVL 103 (136)
T 1j6q_A 43 VGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLP-------DLFREGQGIVAQGVLGEDGKLAATEVL 103 (136)
T ss_dssp TTCCEECTTSSCEEEEEECTTCCCEEEEECSCCT-------TSCCSSSEEEEEEEECSTTSEEEEEEE
T ss_pred CCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCC-------ccccCCCeEEEEEEECCCCeEEEEEEE
Confidence 3555553234458899988568899999999883 3578999998777776566 8998887
No 115
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=22.79 E-value=18 Score=36.73 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=0.0
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..+.|+|+.. ..||....-..+.+-++|+|++.......--..++.||.|...+..-+
T Consensus 639 ~v~~G~V~~I---~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD 696 (726)
T 4aid_A 639 KIYDGKVVKV---VDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFD 696 (726)
T ss_dssp -------------------------------------------------------------
T ss_pred cEEEEEEEEE---eccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEEC
Confidence 5578898876 569977766667899999999975321111235899999999887754
No 116
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=21.37 E-value=3e+02 Score=21.64 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=47.2
Q ss_pred eeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCCcccccCCCCCCEEEEEEEeCCCC-ceEEEEeC
Q psy547 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG-HEAINVTG 102 (282)
Q Consensus 34 ~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~~~g~~~l~~Gd~V~f~v~~~~kG-~~A~~V~~ 102 (282)
..|.|+|-.....+=|...|+++..|-|++..+..+ ..++|+.|..+=.-.+.| ..|.+|..
T Consensus 42 ~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilPD-------lFrEGqgVVa~G~l~~~g~F~A~eVLa 104 (136)
T 1j6q_A 42 TVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPD-------LFREGQGIVAQGVLGEDGKLAATEVLA 104 (136)
T ss_dssp CTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCTT-------SCCSSSEEEEEEEECSTTSEEEEEEEC
T ss_pred eCCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCCc-------cccCCCeEEEEEEECCCCeEEEEEEEe
Confidence 346666654456799999885688999999988754 568999999887776556 89999873
No 117
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=21.01 E-value=2.4e+02 Score=25.76 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=37.2
Q ss_pred eeeeeEEEEEEcCCCeeEEecCCCCccEEEEeccccccCCcccccCCCCCCEEEEEEEEcC
Q psy547 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259 (282)
Q Consensus 199 ~~~~G~Vk~fn~~kGfGFI~~~d~~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~ 259 (282)
..++|+|+..+ ++.=||.. + +-+-++|.+++... ..++.||+|.+.+..-.
T Consensus 136 eIV~G~V~ri~--~~~v~VDl-G-k~EgiLp~sE~ip~------E~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 136 TVTTAEVIRVM--GEWADIRI-G-KLETRLPKKEWIPG------EEIKAGDLVKVYIIDVV 186 (344)
T ss_dssp CEEEEEEEEEC--SSEEEEEE-T-TEEEEEEGGGSCTT------CCCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe--cCcEEEEe-C-CeEEEEeHHHcCCC------cCCCCCCEEEEEEEEEE
Confidence 34679999985 33334433 3 78999999999732 47899999999876544
No 118
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=20.85 E-value=2.2e+02 Score=24.19 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=41.1
Q ss_pred eeeeeeeeEEEEeeCCCceEEEeCCCCCCcEEEEeeccccCCC----cccccCCCCCCEEEEEEEeCCC
Q psy547 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP----RKLYKTLAEGETVEFDIMQGDK 93 (282)
Q Consensus 29 ~~~~~~~G~Vkwfn~~kGfGFI~~~d~~~dvF~H~s~l~~~~~----~~g~~~l~~Gd~V~f~v~~~~k 93 (282)
.....+.|+|+--... .-|+.-. ..-+-++|++++....- ..-...|++||.|...+..-..
T Consensus 65 ~~GDiV~G~V~~v~~~--~~~V~I~-~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 65 QAGDVVIGLIQSVGIM--NWFVDIN-SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp CTTCCEEEEEEEECSS--EEEEECS-SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred CCCCEEEEEEEEEeCC--eEEEEeC-CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 3455688999887432 3555544 46789999999975100 0012379999999999876544
No 119
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=20.83 E-value=2.9e+02 Score=22.53 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=40.7
Q ss_pred eeeEEEEEEcCCCeeEEecCCC-CccEEEEeccccccCCcccccCCCCCCEEEEEEEEcCC
Q psy547 201 VCGVVKWFSVKSGYGFIATPSS-NEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 260 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~~~d~-~~dVF~H~s~l~~~~~r~g~~~l~~Gd~V~F~i~~~~k 260 (282)
..|+|..- .+++|...-.. ..+.++|++++.... +.....|++||-|.-.+..-.+
T Consensus 11 ViG~V~~v---~~~~~~VdI~~~~~~a~L~~s~~~g~~-k~~r~~l~~GDlV~ArV~~~~~ 67 (175)
T 2ja9_A 11 VIGVIIGT---FSDSYKVSLQNFSSSVSLSYMAFPNAS-KKNRPTLQVGDLVYARVCTAEK 67 (175)
T ss_dssp EEEEEEEE---CSSEEEEESSTTSCCEEEETTSSTTCC-SSSCCCCCTTCEEEEEEEECCT
T ss_pred EEEEEEEE---ECcEEEEEECCCCccEEEEHHHCCchh-hhhhccCCCCCEEEEEEEEecC
Confidence 45788664 55666666666 689999999997332 3345679999999998877543
No 120
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=20.75 E-value=46 Score=24.04 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=10.9
Q ss_pred eeeeeeEEEEeeC
Q psy547 31 ATKVCGVVKWFSV 43 (282)
Q Consensus 31 ~~~~~G~Vkwfn~ 43 (282)
..+++|+|+|||.
T Consensus 30 G~~L~G~I~~fD~ 42 (79)
T 3sb2_A 30 GIKLQGHVESFDQ 42 (79)
T ss_dssp SCEEEEEEEEECS
T ss_pred CCEEEEEEEEECC
Confidence 5578999999975
No 121
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=20.38 E-value=1.1e+02 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=23.2
Q ss_pred eeeEEEEEEcCCCeeEEe---cCCCCccEEEEeccc
Q psy547 201 VCGVVKWFSVKSGYGFIA---TPSSNEDVFVHSKRI 233 (282)
Q Consensus 201 ~~G~Vk~fn~~kGfGFI~---~~d~~~dVF~H~s~l 233 (282)
..|+|..-....+||... ..++-.-+|-|++.+
T Consensus 146 ~~G~V~~~g~~~~~G~~V~I~H~~G~~t~Y~HL~~~ 181 (252)
T 3nyy_A 146 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY 181 (252)
T ss_dssp SCEEEEEEEEETTTEEEEEEECTTSCEEEEEEESEE
T ss_pred cCEEEEEEEecCCCCCEEEEEeCCcEEEEEeeCCCC
Confidence 458888776667788433 344456799999987
No 122
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=20.13 E-value=57 Score=22.95 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=9.4
Q ss_pred CCceEEEeCCC
Q psy547 44 KSGYGFIATPS 54 (282)
Q Consensus 44 ~kGfGFI~~~d 54 (282)
.||||||+-.+
T Consensus 47 srGfaFV~F~~ 57 (89)
T 3d2w_A 47 FRAFAFVTFAD 57 (89)
T ss_dssp CCSEEEEEESC
T ss_pred CCCEEEEEECC
Confidence 58999999876
Done!