Your job contains 1 sequence.
>psy547
MQMCDSGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVF
VHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQFAANKPKY
NRRKAKANKRKRKSRRNNRLFGVKYQLEIPMEFSSKTMPFFMILFCCLQMCDSGTKAEAT
PSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRK
LYKTLAEGETVEFDIMQGDKGNQFCFVLKNIVLYFSFVPQSV
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy547
(282 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P21573 - symbol:ybx1 "Nuclease-sensitive elemen... 287 2.0e-28 2
UNIPROTKB|D4A0L4 - symbol:Csda "DNA-binding protein A" sp... 295 2.5e-28 2
UNIPROTKB|P16989 - symbol:CSDA "DNA-binding protein A" sp... 302 7.3e-27 1
UNIPROTKB|F1SQ46 - symbol:CSDA "Uncharacterized protein" ... 300 1.2e-26 1
UNIPROTKB|I3LQF8 - symbol:CSDA "Uncharacterized protein" ... 300 1.2e-26 1
UNIPROTKB|A5D7Q4 - symbol:CSDA "Uncharacterized protein" ... 299 1.5e-26 1
RGD|621056 - symbol:Ybx3 "Y box binding protein 3" specie... 295 4.0e-26 1
UNIPROTKB|D4AAT9 - symbol:Csda "DNA-binding protein A" sp... 295 4.0e-26 1
UNIPROTKB|F1MA18 - symbol:Csda "DNA-binding protein A" sp... 295 4.0e-26 1
MGI|MGI:2137670 - symbol:Ybx3 "Y box protein 3" species:1... 294 5.2e-26 1
UNIPROTKB|E1C9B8 - symbol:E1C9B8 "Uncharacterized protein... 293 6.6e-26 1
UNIPROTKB|F1LXN5 - symbol:Csda "DNA-binding protein A" sp... 290 1.4e-25 1
RGD|1305068 - symbol:Ybx2 "Y box binding protein 2" speci... 289 1.8e-25 1
UNIPROTKB|E2RMN5 - symbol:YBX2 "Uncharacterized protein" ... 288 2.2e-25 1
MGI|MGI:1096372 - symbol:Ybx2 "Y box protein 2" species:1... 284 5.9e-25 1
UNIPROTKB|Q9Y2T7 - symbol:YBX2 "Y-box-binding protein 2" ... 284 5.9e-25 1
UNIPROTKB|J9NTE1 - symbol:CSDA "Uncharacterized protein" ... 284 5.9e-25 1
UNIPROTKB|J9NV99 - symbol:CSDA "Uncharacterized protein" ... 283 7.6e-25 1
ZFIN|ZDB-GENE-000629-3 - symbol:ybx1 "Y box binding prote... 282 9.7e-25 1
UNIPROTKB|Q06066 - symbol:YBX1 "Nuclease-sensitive elemen... 282 9.7e-25 1
UNIPROTKB|P67808 - symbol:YBX1 "Nuclease-sensitive elemen... 281 1.2e-24 1
UNIPROTKB|E2R1A0 - symbol:YBX1 "Uncharacterized protein" ... 281 1.2e-24 1
UNIPROTKB|P67809 - symbol:YBX1 "Nuclease-sensitive elemen... 281 1.2e-24 1
UNIPROTKB|Q28618 - symbol:YBX1 "Nuclease-sensitive elemen... 281 1.2e-24 1
MGI|MGI:99146 - symbol:Ybx1 "Y box protein 1" species:100... 281 1.2e-24 1
RGD|61843 - symbol:Ybx1 "Y box binding protein 1" species... 281 1.2e-24 1
RGD|6486912 - symbol:LOC100912427 "nuclease-sensitive ele... 281 1.2e-24 1
UNIPROTKB|F1SFU0 - symbol:LOC100736899 "Uncharacterized p... 280 1.6e-24 1
UNIPROTKB|I3LCJ2 - symbol:YBX2 "Uncharacterized protein" ... 280 1.6e-24 1
UNIPROTKB|A5D7M4 - symbol:YBX2 "Uncharacterized protein" ... 280 1.6e-24 1
UNIPROTKB|F1MZ92 - symbol:YBX1 "Nuclease-sensitive elemen... 280 1.6e-24 1
UNIPROTKB|P45441 - symbol:ybx2-b "Y-box-binding protein 2... 280 1.6e-24 1
UNIPROTKB|J9NTJ7 - symbol:LOC474472 "Uncharacterized prot... 278 2.6e-24 1
UNIPROTKB|E9PTV8 - symbol:E9PTV8 "Uncharacterized protein... 278 2.6e-24 1
UNIPROTKB|P21574 - symbol:ybx2-a "Y-box-binding protein 2... 278 2.6e-24 1
UNIPROTKB|F1PB10 - symbol:CSDA "Uncharacterized protein" ... 277 3.3e-24 1
UNIPROTKB|J9NYZ2 - symbol:J9NYZ2 "Uncharacterized protein... 276 4.2e-24 1
UNIPROTKB|J9P9A0 - symbol:J9P9A0 "Uncharacterized protein... 276 4.2e-24 1
UNIPROTKB|F1NQ33 - symbol:F1NQ33 "Uncharacterized protein... 276 4.2e-24 1
UNIPROTKB|F1LY12 - symbol:F1LY12 "Uncharacterized protein... 275 5.3e-24 1
FB|FBgn0022959 - symbol:yps "ypsilon schachtel" species:7... 274 6.8e-24 1
UNIPROTKB|F1NFC0 - symbol:YBX1 "Nuclease-sensitive elemen... 272 1.1e-23 1
UNIPROTKB|F1NKY2 - symbol:YBX1 "Nuclease-sensitive elemen... 272 1.1e-23 1
UNIPROTKB|F1PF55 - symbol:F1PF55 "Uncharacterized protein... 267 3.8e-23 1
UNIPROTKB|F1PF53 - symbol:F1PF53 "Uncharacterized protein... 265 6.1e-23 1
WB|WBGene00000472 - symbol:cey-1 species:6239 "Caenorhabd... 262 1.3e-22 1
UNIPROTKB|F1M0E9 - symbol:F1M0E9 "Uncharacterized protein... 259 2.6e-22 1
UNIPROTKB|F1S319 - symbol:F1S319 "Uncharacterized protein... 251 1.9e-21 1
UNIPROTKB|F1RWB7 - symbol:F1RWB7 "Uncharacterized protein... 250 2.4e-21 1
UNIPROTKB|F1LTA0 - symbol:F1LTA0 "Uncharacterized protein... 250 2.4e-21 1
UNIPROTKB|F1M1Q9 - symbol:F1M1Q9 "Uncharacterized protein... 250 2.4e-21 1
UNIPROTKB|F1NA94 - symbol:F1NA94 "Uncharacterized protein... 240 2.7e-20 1
UNIPROTKB|F1RZ18 - symbol:F1RZ18 "Uncharacterized protein... 216 2.8e-20 2
UNIPROTKB|F1LUS5 - symbol:F1LUS5 "Uncharacterized protein... 199 1.7e-18 2
UNIPROTKB|F1NMZ8 - symbol:YBX1 "Nuclease-sensitive elemen... 223 1.7e-18 1
UNIPROTKB|F1PZ69 - symbol:F1PZ69 "Uncharacterized protein... 218 5.8e-18 1
UNIPROTKB|G3X6E4 - symbol:G3X6E4 "Uncharacterized protein... 214 1.6e-17 1
UNIPROTKB|G3N0T3 - symbol:G3N0T3 "Uncharacterized protein... 210 4.1e-17 1
WB|WBGene00000475 - symbol:cey-4 species:6239 "Caenorhabd... 210 4.1e-17 1
UNIPROTKB|I3LFV4 - symbol:YBX1 "Uncharacterized protein" ... 209 6.3e-17 1
WB|WBGene00000474 - symbol:cey-3 species:6239 "Caenorhabd... 200 4.7e-16 1
UNIPROTKB|F1M549 - symbol:F1M549 "Uncharacterized protein... 196 1.5e-15 1
WB|WBGene00000473 - symbol:cey-2 species:6239 "Caenorhabd... 191 4.2e-15 1
UNIPROTKB|F1M1T6 - symbol:F1M1T6 "Uncharacterized protein... 192 4.8e-15 1
UNIPROTKB|G3N2S9 - symbol:G3N2S9 "Uncharacterized protein... 187 1.1e-14 1
UNIPROTKB|H0Y449 - symbol:YBX1 "Nuclease-sensitive elemen... 191 1.5e-14 1
UNIPROTKB|F1SN83 - symbol:F1SN83 "Uncharacterized protein... 186 6.0e-14 1
RGD|2324048 - symbol:LOC100366210 "Y box binding protein ... 184 1.8e-13 1
UNIPROTKB|J9PBG2 - symbol:J9PBG2 "Uncharacterized protein... 179 8.7e-13 1
UNIPROTKB|I3LAD3 - symbol:I3LAD3 "Uncharacterized protein... 181 1.0e-12 1
UNIPROTKB|P0A9Y6 - symbol:cspC species:83333 "Escherichia... 168 1.2e-12 1
UNIPROTKB|F1M451 - symbol:F1M451 "Uncharacterized protein... 160 9.6e-12 1
UNIPROTKB|F1NS05 - symbol:LIN28A "Protein lin-28 homolog ... 159 1.3e-11 1
UNIPROTKB|Q45KJ5 - symbol:LIN28A "Protein lin-28 homolog ... 159 1.3e-11 1
UNIPROTKB|P0A972 - symbol:cspE species:83333 "Escherichia... 157 2.2e-11 1
TAIR|locus:2047092 - symbol:GRP2B "glycine-rich protein 2... 157 2.2e-11 1
UNIPROTKB|Q9KN00 - symbol:cspA "Cold shock-like protein C... 153 6.5e-11 1
TIGR_CMR|VC_A0166 - symbol:VC_A0166 "cold shock transcrip... 153 6.5e-11 1
TIGR_CMR|GSU_0581 - symbol:GSU_0581 "cold-shock domain fa... 152 8.5e-11 1
UNIPROTKB|P0A986 - symbol:cspI species:83333 "Escherichia... 150 1.5e-10 1
UNIPROTKB|Q9KL16 - symbol:cspV "Cold shock protein CspV" ... 150 1.5e-10 1
TIGR_CMR|VC_A0933 - symbol:VC_A0933 "cold shock domain fa... 150 1.5e-10 1
UNIPROTKB|P36995 - symbol:cspB species:83333 "Escherichia... 150 1.5e-10 1
TIGR_CMR|SO_1648 - symbol:SO_1648 "cold shock domain fami... 150 1.5e-10 1
UNIPROTKB|P0A978 - symbol:cspG species:83333 "Escherichia... 148 2.5e-10 1
TIGR_CMR|SO_2787 - symbol:SO_2787 "cold shock domain fami... 147 3.3e-10 1
UNIPROTKB|Q8AVK2 - symbol:lin28b "Protein lin-28 homolog ... 159 4.5e-10 1
UNIPROTKB|P0A9X9 - symbol:cspA species:83333 "Escherichia... 145 5.6e-10 1
TIGR_CMR|CHY_0155 - symbol:CHY_0155 "cold shock protein C... 143 9.6e-10 1
TAIR|locus:2121219 - symbol:GRP2 "AT4G38680" species:3702... 147 9.8e-10 1
TIGR_CMR|GSU_0207 - symbol:GSU_0207 "cold-shock domain fa... 142 1.2e-09 1
TIGR_CMR|CPS_0718 - symbol:CPS_0718 "cold-shock DNA-bindi... 141 1.6e-09 1
TIGR_CMR|BA_5424 - symbol:BA_5424 "cold shock protein Csp... 141 1.6e-09 1
TIGR_CMR|GSU_1905 - symbol:GSU_1905 "cold shock domain fa... 141 1.6e-09 1
TIGR_CMR|CPS_2895 - symbol:CPS_2895 "cold shock-like prot... 141 1.6e-09 1
TIGR_CMR|BA_1135 - symbol:BA_1135 "cold shock protein Csp... 140 2.1e-09 1
TIGR_CMR|BA_5115 - symbol:BA_5115 "cold shock protein Csp... 140 2.1e-09 1
TIGR_CMR|CHY_0157 - symbol:CHY_0157 "cold shock protein C... 138 3.6e-09 1
UNIPROTKB|P0A968 - symbol:cspD species:83333 "Escherichia... 138 3.6e-09 1
UNIPROTKB|Q9KMY2 - symbol:VC_A0184 "Cold shock DNA-bindin... 135 8.0e-09 1
WARNING: Descriptions of 44 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|P21573 [details] [associations]
symbol:ybx1 "Nuclease-sensitive element-binding protein 1"
species:8355 "Xenopus laevis" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 GO:GO:0071204 EMBL:M59453
PIR:A38274 UniGene:Xl.2633 ProteinModelPortal:P21573 SMR:P21573
PRIDE:P21573 Xenbase:XB-GENE-865405 Uniprot:P21573
Length = 303
Score = 287 (106.1 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 55/97 (56%), Positives = 72/97 (74%)
Query: 17 PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 76
P+A KK V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +
Sbjct: 23 PAATVGDKK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLR 79
Query: 77 TLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
++ +GETVEFD+++G+KG EA NVTGP+G VQGS++
Sbjct: 80 SVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKY 116
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 184 PSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 243
P+A+ KK V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +
Sbjct: 23 PAATVGDKK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLR 79
Query: 244 TLAEGETVEFDIMQGDKG 261
++ +GETVEFD+++G+KG
Sbjct: 80 SVGDGETVEFDVVEGEKG 97
Score = 45 (20.9 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 172 DSGTKAEATPSNPSASESPKKEP 194
+SG KAE S P +S ++ P
Sbjct: 144 ESGEKAEENESAPEGDDSNQQRP 166
>UNIPROTKB|D4A0L4 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00959307
Ensembl:ENSRNOT00000068185 ArrayExpress:D4A0L4 Uniprot:D4A0L4
Length = 306
Score = 295 (108.9 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 56/99 (56%), Positives = 75/99 (75%)
Query: 15 SNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 74
S P+ +E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 75 YKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 162
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 182 SNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 241
S P+ SE +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 242 YKTLAEGETVEFDIMQGDKG 261
+++ +GETVEFD+++G+KG
Sbjct: 124 LRSVGDGETVEFDVVEGEKG 143
Score = 36 (17.7 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 143 VKYQLEIPMEFSSKTMP 159
VK+QL P++ ++ +P
Sbjct: 277 VKHQLRTPLQPPNRAVP 293
>UNIPROTKB|P16989 [details] [associations]
symbol:CSDA "DNA-binding protein A" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0046622 "positive regulation of organ
growth" evidence=IEA] [GO:0048642 "negative regulation of skeletal
muscle tissue development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0003714
"transcription corepressor activity" evidence=TAS] [GO:0009409
"response to cold" evidence=TAS] [GO:0017048 "Rho GTPase binding"
evidence=ISS] [GO:0060547 "negative regulation of necrotic cell
death" evidence=IMP] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071356 "cellular response to tumor necrosis
factor" evidence=IMP] [GO:2000767 "positive regulation of
cytoplasmic translation" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISS] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0043066 GO:GO:0031100
GO:GO:0009409 GO:GO:0001701 GO:GO:0009566 GO:GO:0003700
GO:GO:0007283 GO:GO:0006351 GO:GO:0008584 GO:GO:0000122
GO:GO:0003730 GO:GO:0003690 GO:GO:0003697 EMBL:CH471094
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
EMBL:M24069 EMBL:L29071 EMBL:L29064 EMBL:L29065 EMBL:L29066
EMBL:L29067 EMBL:L29068 EMBL:L29069 EMBL:L29070 EMBL:X95325
EMBL:X72712 EMBL:AK314846 EMBL:BC008801 EMBL:BC015564 EMBL:BC015913
EMBL:BC021926 IPI:IPI00031801 IPI:IPI00219147 IPI:IPI00219148
PIR:I53354 PIR:S69501 RefSeq:NP_001138898.1 RefSeq:NP_003642.3
UniGene:Hs.221889 ProteinModelPortal:P16989 SMR:P16989
DIP:DIP-42489N IntAct:P16989 MINT:MINT-1152000 STRING:P16989
PhosphoSite:P16989 DMDM:97536050 PaxDb:P16989 PRIDE:P16989
DNASU:8531 Ensembl:ENST00000228251 Ensembl:ENST00000279550
GeneID:8531 KEGG:hsa:8531 UCSC:uc001qyt.3 UCSC:uc001qyu.3 CTD:8531
GeneCards:GC12M010851 HGNC:HGNC:2428 HPA:HPA034838 MIM:603437
neXtProt:NX_P16989 PharmGKB:PA26929 HOGENOM:HOG000116439
HOVERGEN:HBG008757 InParanoid:P16989 KO:K06099 OMA:ENQQATS
OrthoDB:EOG46DM3W PhylomeDB:P16989 ChiTaRS:CSDA GenomeRNAi:8531
NextBio:31948 PMAP-CutDB:P16989 Bgee:P16989 CleanEx:HS_CSDA
Genevestigator:P16989 GermOnline:ENSG00000060138 GO:GO:0048642
Uniprot:P16989
Length = 372
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 58/108 (53%), Positives = 80/108 (74%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
+GT A A+ + + +E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 65 TGTAAAASLATAAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 122
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 123 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 170
Score = 244 (91.0 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
+GT A A+ + + SE +K+ VLATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 65 TGTAAAASLATAAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 122
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 123 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 151
>UNIPROTKB|F1SQ46 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K06099 GeneTree:ENSGT00390000009256
EMBL:CU856689 RefSeq:XP_003355623.1 UniGene:Ssc.9655
Ensembl:ENSSSCT00000000680 GeneID:100518125 KEGG:ssc:100518125
Uniprot:F1SQ46
Length = 312
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 57/102 (55%), Positives = 75/102 (73%)
Query: 12 ATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP 71
A P++ +A S E VLATKV G VKWF+V++GYGFI + EDVFVH IK NNP
Sbjct: 78 AAPASSAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 137
Query: 72 RKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
RK +++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 138 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 179
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 45/83 (54%), Positives = 61/83 (73%)
Query: 179 ATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP 238
A P++ +A+ S E VLATKV G VKWF+V++GYGFI + EDVFVH IK NNP
Sbjct: 78 AAPASSAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 137
Query: 239 RKLYKTLAEGETVEFDIMQGDKG 261
RK +++ +GETVEFD+++G+KG
Sbjct: 138 RKYLRSVGDGETVEFDVVEGEKG 160
>UNIPROTKB|I3LQF8 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:CU856689 UniGene:Ssc.9655 GeneID:100518125 KEGG:ssc:100518125
RefSeq:XP_003126523.1 Ensembl:ENSSSCT00000027246 Uniprot:I3LQF8
Length = 380
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 57/102 (55%), Positives = 75/102 (73%)
Query: 12 ATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP 71
A P++ +A S E VLATKV G VKWF+V++GYGFI + EDVFVH IK NNP
Sbjct: 78 AAPASSAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 137
Query: 72 RKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
RK +++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 138 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 179
Score = 242 (90.2 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 45/83 (54%), Positives = 61/83 (73%)
Query: 179 ATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP 238
A P++ +A+ S E VLATKV G VKWF+V++GYGFI + EDVFVH IK NNP
Sbjct: 78 AAPASSAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 137
Query: 239 RKLYKTLAEGETVEFDIMQGDKG 261
RK +++ +GETVEFD+++G+KG
Sbjct: 138 RKYLRSVGDGETVEFDVVEGEKG 160
>UNIPROTKB|A5D7Q4 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:DAAA02014333 EMBL:BC140644 IPI:IPI00852465
RefSeq:NP_001091543.1 UniGene:Bt.7655 SMR:A5D7Q4 STRING:A5D7Q4
Ensembl:ENSBTAT00000012735 GeneID:533297 KEGG:bta:533297
InParanoid:A5D7Q4 NextBio:20875990 Uniprot:A5D7Q4
Length = 376
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 57/102 (55%), Positives = 75/102 (73%)
Query: 12 ATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP 71
A P++ +A S E VLATKV G VKWF+V++GYGFI + EDVFVH IK NNP
Sbjct: 75 AAPASSAAVGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 134
Query: 72 RKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
RK +++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 135 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 176
Score = 239 (89.2 bits), Expect = 5.4e-20, P = 5.4e-20
Identities = 45/83 (54%), Positives = 60/83 (72%)
Query: 179 ATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP 238
A P++ +A S E VLATKV G VKWF+V++GYGFI + EDVFVH IK NNP
Sbjct: 75 AAPASSAAVGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 134
Query: 239 RKLYKTLAEGETVEFDIMQGDKG 261
RK +++ +GETVEFD+++G+KG
Sbjct: 135 RKYLRSVGDGETVEFDVVEGEKG 157
>RGD|621056 [details] [associations]
symbol:Ybx3 "Y box binding protein 3" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005921 "gap junction" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEP;ISO] [GO:0008584 "male
gonad development" evidence=ISO] [GO:0009566 "fertilization"
evidence=ISO] [GO:0031100 "organ regeneration" evidence=IEP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] [GO:0046622 "positive regulation of organ growth"
evidence=ISO] [GO:0048642 "negative regulation of skeletal muscle
tissue development" evidence=ISO] [GO:0060547 "negative regulation
of necrotic cell death" evidence=ISO] [GO:0071356 "cellular
response to tumor necrosis factor" evidence=ISO] [GO:0071474
"cellular hyperosmotic response" evidence=ISO] [GO:0005844
"polysome" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 RGD:621056
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0031100
GO:GO:0001701 GO:GO:0009566 GO:GO:0007283 GO:GO:0006351
GO:GO:0008584 GO:GO:0000122 GO:GO:0003730 GO:GO:0003697
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757 KO:K06099
GO:GO:0048642 EMBL:U22893 EMBL:D28557 IPI:IPI00208217
IPI:IPI00231811 PIR:S51608 RefSeq:NP_114185.3 UniGene:Rn.3306
ProteinModelPortal:Q62764 SMR:Q62764 IntAct:Q62764
MINT:MINT-4597726 STRING:Q62764 PhosphoSite:Q62764 PRIDE:Q62764
GeneID:83807 KEGG:rno:83807 UCSC:RGD:621056 InParanoid:Q62764
ArrayExpress:Q62764 Genevestigator:Q62764
GermOnline:ENSRNOG00000005480 Uniprot:Q62764
Length = 361
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 56/99 (56%), Positives = 75/99 (75%)
Query: 15 SNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 74
S P+ +E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 75 YKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 162
Score = 237 (88.5 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 182 SNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 241
S P+ SE +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 242 YKTLAEGETVEFDIMQGDKG 261
+++ +GETVEFD+++G+KG
Sbjct: 124 LRSVGDGETVEFDVVEGEKG 143
>UNIPROTKB|D4AAT9 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00947719 Ensembl:ENSRNOT00000007347
ArrayExpress:D4AAT9 Uniprot:D4AAT9
Length = 308
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 56/99 (56%), Positives = 75/99 (75%)
Query: 15 SNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 74
S P+ +E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 75 YKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 162
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 182 SNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 241
S P+ SE +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 242 YKTLAEGETVEFDIMQGDKG 261
+++ +GETVEFD+++G+KG
Sbjct: 124 LRSVGDGETVEFDVVEGEKG 143
>UNIPROTKB|F1MA18 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0009566 "fertilization" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0046622 "positive regulation of organ growth" evidence=IEA]
[GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:621056 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
IPI:IPI01016461 Ensembl:ENSRNOT00000007427 ArrayExpress:F1MA18
Uniprot:F1MA18
Length = 361
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 56/99 (56%), Positives = 75/99 (75%)
Query: 15 SNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 74
S P+ +E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 75 YKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 162
Score = 237 (88.5 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 182 SNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 241
S P+ SE +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGSEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 242 YKTLAEGETVEFDIMQGDKG 261
+++ +GETVEFD+++G+KG
Sbjct: 124 LRSVGDGETVEFDVVEGEKG 143
>MGI|MGI:2137670 [details] [associations]
symbol:Ybx3 "Y box protein 3" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=IGI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005844 "polysome" evidence=IDA] [GO:0005921 "gap
junction" evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0009566 "fertilization" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0046622
"positive regulation of organ growth" evidence=IMP] [GO:0048642
"negative regulation of skeletal muscle tissue development"
evidence=IDA] [GO:0060547 "negative regulation of necrotic cell
death" evidence=ISO] [GO:0071356 "cellular response to tumor
necrosis factor" evidence=ISO] [GO:0071474 "cellular hyperosmotic
response" evidence=ISO] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
MGI:MGI:2137670 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066
GO:GO:0003677 GO:GO:0031100 GO:GO:0001701 GO:GO:0009566
GO:GO:0007283 GO:GO:0006351 GO:GO:0003723 GO:GO:0008584
GO:GO:0000122 GO:GO:0003730 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 GO:GO:0005921
InterPro:IPR019844 eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439
HOVERGEN:HBG008757 KO:K06099 OMA:ENQQATS ChiTaRS:CSDA GO:GO:0048642
EMBL:AF246224 EMBL:AF248546 EMBL:AF248547 EMBL:BC048242
EMBL:BC062377 IPI:IPI00274739 IPI:IPI00330591 RefSeq:NP_035863.1
RefSeq:NP_620817.2 UniGene:Mm.458000 ProteinModelPortal:Q9JKB3
SMR:Q9JKB3 DIP:DIP-42746N IntAct:Q9JKB3 MINT:MINT-1891951
STRING:Q9JKB3 PhosphoSite:Q9JKB3 PaxDb:Q9JKB3 PRIDE:Q9JKB3
Ensembl:ENSMUST00000032309 Ensembl:ENSMUST00000087865 GeneID:56449
KEGG:mmu:56449 UCSC:uc009eit.1 GeneTree:ENSGT00390000009256
InParanoid:Q9JKB3 NextBio:312662 Bgee:Q9JKB3 CleanEx:MM_CSDA
Genevestigator:Q9JKB3 GermOnline:ENSMUSG00000030189 Uniprot:Q9JKB3
Length = 361
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 56/99 (56%), Positives = 74/99 (74%)
Query: 15 SNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 74
S P+ E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGGEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 75 YKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 124 LRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 162
Score = 233 (87.1 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 44/80 (55%), Positives = 59/80 (73%)
Query: 182 SNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKL 241
S P+ E +K+ VLATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 66 SAPAGGEDAEKK--VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 123
Query: 242 YKTLAEGETVEFDIMQGDKG 261
+++ +GETVEFD+++G+KG
Sbjct: 124 LRSVGDGETVEFDVVEGEKG 143
>UNIPROTKB|E1C9B8 [details] [associations]
symbol:E1C9B8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00588677 Ensembl:ENSGALT00000029277 OMA:EHAGIIV
ArrayExpress:E1C9B8 Uniprot:E1C9B8
Length = 295
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 60/109 (55%), Positives = 81/109 (74%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS-SNEDVFVHSK 64
SG+ A T + +A E+ KK VLATKV G VKWF+V++GYGFI + + + EDVFVH
Sbjct: 58 SGSAATTTAA-AAAGETEKK---VLATKVLGTVKWFNVRNGYGFINSRNDTKEDVFVHQT 113
Query: 65 RIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 114 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 162
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 48/90 (53%), Positives = 66/90 (73%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS-SNEDVFVHSK 231
SG+ A T + +A E+ KK VLATKV G VKWF+V++GYGFI + + + EDVFVH
Sbjct: 58 SGSAATTTAA-AAAGETEKK---VLATKVLGTVKWFNVRNGYGFINSRNDTKEDVFVHQT 113
Query: 232 RIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 114 AIKKNNPRKYLRSVGDGETVEFDVVEGEKG 143
>UNIPROTKB|F1LXN5 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00951973 PRIDE:F1LXN5
Ensembl:ENSRNOT00000068352 ArrayExpress:F1LXN5 Uniprot:F1LXN5
Length = 273
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 58/109 (53%), Positives = 74/109 (67%)
Query: 7 GTKAEATPS--NPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSK 64
G A P +P KK VLATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 40 GRSPRARPGLISPRGKRGEKK---VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 96
Query: 65 RIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGPDG V+GS++
Sbjct: 97 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRY 145
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 46/90 (51%), Positives = 59/90 (65%)
Query: 174 GTKAEATPS--NPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSK 231
G A P +P KK VLATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 40 GRSPRARPGLISPRGKRGEKK---VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 96
Query: 232 RIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 97 AIKKNNPRKYLRSVGDGETVEFDVVEGEKG 126
>RGD|1305068 [details] [associations]
symbol:Ybx2 "Y box binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO] [GO:0008289 "lipid binding" evidence=IEA;ISO]
[GO:0017148 "negative regulation of translation" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA;ISO] [GO:0045182
"translation regulator activity" evidence=IEA;ISO] [GO:0048255
"mRNA stabilization" evidence=IEA;ISO] [GO:0048477 "oogenesis"
evidence=ISO] [GO:0048599 "oocyte development" evidence=IEP]
[GO:0051100 "negative regulation of binding" evidence=IEA;ISO]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:1305068 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844
GO:GO:0051100 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 KO:K09277 OMA:MEGTDGV IPI:IPI00369907
RefSeq:XP_001079683.1 RefSeq:XP_220618.3 ProteinModelPortal:D4A3P0
Ensembl:ENSRNOT00000023003 GeneID:303250 KEGG:rno:303250
UCSC:RGD:1305068 NextBio:650980 ArrayExpress:D4A3P0 Uniprot:D4A3P0
Length = 359
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 56/109 (51%), Positives = 78/109 (71%)
Query: 5 DSGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSK 64
+ T A TP+ P+ +++ K PV LA +V G VKWF+V++GYGFI + EDVFVH
Sbjct: 69 NQATAASGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 125
Query: 65 RIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G V+GS++
Sbjct: 126 AIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRY 174
Score = 239 (89.2 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 46/90 (51%), Positives = 64/90 (71%)
Query: 172 DSGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSK 231
+ T A TP+ P+ S++ K PV LA +V G VKWF+V++GYGFI + EDVFVH
Sbjct: 69 NQATAASGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 125
Query: 232 RIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 126 AIKRNNPRKFLRSVGDGETVEFDVVEGEKG 155
>UNIPROTKB|E2RMN5 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0048477 GO:GO:0003682 GO:GO:0045182 GO:GO:0048255
GO:GO:0008289 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844
GO:GO:0051100 GeneTree:ENSGT00390000009256 OMA:MEGTDGV
EMBL:AAEX03003607 Ensembl:ENSCAFT00000021272 NextBio:20862641
Uniprot:E2RMN5
Length = 367
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 56/106 (52%), Positives = 77/106 (72%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T A TP+ P+ +++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNPRK +++ +GETVEFD+++G+KG EA NVTGP G V+GS++
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRY 175
Score = 238 (88.8 bits), Expect = 5.9e-20, P = 5.9e-20
Identities = 46/87 (52%), Positives = 63/87 (72%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T A TP+ P+ S++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKG 261
NNPRK +++ +GETVEFD+++G+KG
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKG 156
>MGI|MGI:1096372 [details] [associations]
symbol:Ybx2 "Y box protein 2" species:10090 "Mus musculus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008289 "lipid binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IDA] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0048255 "mRNA
stabilization" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051100 "negative regulation of binding" evidence=IMP]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:1096372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0048477 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 EMBL:AL596185 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 ChiTaRS:YBX2 EMBL:AF073954
EMBL:AF073955 IPI:IPI00131034 IPI:IPI00553286 RefSeq:NP_058571.2
UniGene:Mm.29286 ProteinModelPortal:Q9Z2C8 SMR:Q9Z2C8
DIP:DIP-59783N STRING:Q9Z2C8 PhosphoSite:Q9Z2C8
REPRODUCTION-2DPAGE:Q9Z2C8 PaxDb:Q9Z2C8 PRIDE:Q9Z2C8
Ensembl:ENSMUST00000108601 GeneID:53422 KEGG:mmu:53422
InParanoid:Q9Z2C8 NextBio:310261 Bgee:Q9Z2C8 CleanEx:MM_YBX2
Genevestigator:Q9Z2C8 GermOnline:ENSMUSG00000018554 Uniprot:Q9Z2C8
Length = 360
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 55/109 (50%), Positives = 77/109 (70%)
Query: 5 DSGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSK 64
+ T A TP+ P+ +++ K PV LA +V G VKWF+V++GYGFI + EDVFVH
Sbjct: 70 NQATAASGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 126
Query: 65 RIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG A NVTGP G V+GS++
Sbjct: 127 AIKRNNPRKFLRSVGDGETVEFDVVEGEKGARAANVTGPGGVPVKGSRY 175
Score = 239 (89.2 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 46/90 (51%), Positives = 64/90 (71%)
Query: 172 DSGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSK 231
+ T A TP+ P+ S++ K PV LA +V G VKWF+V++GYGFI + EDVFVH
Sbjct: 70 NQATAASGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 126
Query: 232 RIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 127 AIKRNNPRKFLRSVGDGETVEFDVVEGEKG 156
>UNIPROTKB|Q9Y2T7 [details] [associations]
symbol:YBX2 "Y-box-binding protein 2" species:9606 "Homo
sapiens" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
[GO:0048599 "oocyte development" evidence=IEA] [GO:0051100
"negative regulation of binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0009386 "translational attenuation" evidence=TAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005634 GO:GO:0005737
EMBL:CH471108 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0007283 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 GO:GO:0006366 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844 GO:GO:0051100
eggNOG:COG1278 HOGENOM:HOG000116439 OrthoDB:EOG46DM3W EMBL:AF096834
EMBL:BC033800 EMBL:BC047760 IPI:IPI00250153 RefSeq:NP_057066.2
UniGene:Hs.567494 ProteinModelPortal:Q9Y2T7 SMR:Q9Y2T7
STRING:Q9Y2T7 PhosphoSite:Q9Y2T7 DMDM:116242847 PaxDb:Q9Y2T7
PRIDE:Q9Y2T7 Ensembl:ENST00000007699 GeneID:51087 KEGG:hsa:51087
UCSC:uc002gfq.2 CTD:51087 GeneCards:GC17M007191 HGNC:HGNC:17948
HPA:CAB012332 MIM:611447 neXtProt:NX_Q9Y2T7 PharmGKB:PA142670560
HOVERGEN:HBG079361 InParanoid:Q9Y2T7 KO:K09277 OMA:MEGTDGV
PhylomeDB:Q9Y2T7 ChiTaRS:YBX2 GenomeRNAi:51087 NextBio:53755
Bgee:Q9Y2T7 CleanEx:HS_YBX2 Genevestigator:Q9Y2T7
GermOnline:ENSG00000006047 GO:GO:0009386 Uniprot:Q9Y2T7
Length = 364
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 55/106 (51%), Positives = 76/106 (71%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T TP+ P+ +++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 71 TAVSGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 127
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNPRK +++ +GETVEFD+++G+KG EA NVTGP G V+GS++
Sbjct: 128 RNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRY 173
Score = 234 (87.4 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 45/87 (51%), Positives = 62/87 (71%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T TP+ P+ S++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 71 TAVSGTPAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 127
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKG 261
NNPRK +++ +GETVEFD+++G+KG
Sbjct: 128 RNNPRKFLRSVGDGETVEFDVVEGEKG 154
>UNIPROTKB|J9NTE1 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000048154 Uniprot:J9NTE1
Length = 314
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 51/86 (59%), Positives = 68/86 (79%)
Query: 28 VVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFD 87
++LATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD
Sbjct: 17 LILATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFD 76
Query: 88 IMQGDKGHEAINVTGPDGRHVQGSQF 113
+++G+KG EA NVTGPDG V+GS++
Sbjct: 77 VVEGEKGAEAANVTGPDGVPVEGSRY 102
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 39/67 (58%), Positives = 53/67 (79%)
Query: 195 VVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFD 254
++LATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD
Sbjct: 17 LILATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFD 76
Query: 255 IMQGDKG 261
+++G+KG
Sbjct: 77 VVEGEKG 83
>UNIPROTKB|J9NV99 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000044569 Uniprot:J9NV99
Length = 217
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 51/85 (60%), Positives = 67/85 (78%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
+LATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 1 ILATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 60
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQF 113
++G+KG EA NVTGPDG V+GS++
Sbjct: 61 VEGEKGAEAANVTGPDGVPVEGSRY 85
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 39/66 (59%), Positives = 52/66 (78%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
+LATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 1 ILATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 60
Query: 256 MQGDKG 261
++G+KG
Sbjct: 61 VEGEKG 66
>ZFIN|ZDB-GENE-000629-3 [details] [associations]
symbol:ybx1 "Y box binding protein 1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 ZFIN:ZDB-GENE-000629-3 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 EMBL:BC070000 IPI:IPI00837236
UniGene:Dr.59019 ProteinModelPortal:Q6NSP3 SMR:Q6NSP3
InParanoid:Q6NSP3 ArrayExpress:Q6NSP3 Uniprot:Q6NSP3
Length = 310
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 56/105 (53%), Positives = 77/105 (73%)
Query: 10 AEA-TPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKY 68
A+A +PS+P+A + + V+ ATKV G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 15 ADAESPSSPAAAATAGDKKVI-ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKK 73
Query: 69 NNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNPRK +++ +GETVEF +++G+KG EA NVTGP G VQGS++
Sbjct: 74 NNPRKYLRSVGDGETVEFAVVEGEKGAEAANVTGPGGVPVQGSKY 118
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 44/86 (51%), Positives = 64/86 (74%)
Query: 177 AEA-TPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKY 235
A+A +PS+P+A+ + + V+ ATKV G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 15 ADAESPSSPAAAATAGDKKVI-ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKK 73
Query: 236 NNPRKLYKTLAEGETVEFDIMQGDKG 261
NNPRK +++ +GETVEF +++G+KG
Sbjct: 74 NNPRKYLRSVGDGETVEFAVVEGEKG 99
>UNIPROTKB|Q06066 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0071204 EMBL:L13032
IPI:IPI00587895 PIR:A48136 UniGene:Gga.4145
ProteinModelPortal:Q06066 SMR:Q06066 STRING:Q06066 PRIDE:Q06066
eggNOG:NOG326255 ArrayExpress:Q06066 Uniprot:Q06066
Length = 321
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 56/108 (51%), Positives = 77/108 (71%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
+G+ A+ + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 33 NGSSGLASAAPPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 87
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 88 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 135
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 44/89 (49%), Positives = 63/89 (70%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
+G+ A+ + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 33 NGSSGLASAAPPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 87
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 88 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 116
>UNIPROTKB|P67808 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0005576
"extracellular region" evidence=IEA] [GO:0051781 "positive
regulation of cell division" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0051781 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000116439 HOVERGEN:HBG008757
OrthoDB:EOG46DM3W GO:GO:0070934 GO:GO:0071204 EMBL:M95793
EMBL:BC105363 IPI:IPI00689440 PIR:I39382 PIR:JQ2292
RefSeq:NP_777240.1 UniGene:Bt.5332 ProteinModelPortal:P67808
SMR:P67808 STRING:P67808 PRIDE:P67808 GeneID:287023 KEGG:bta:287023
CTD:4904 InParanoid:P67808 KO:K09276 NextBio:20806545
Uniprot:P67808
Length = 324
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 138
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 119
>UNIPROTKB|E2R1A0 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03009523
EMBL:AAEX03009522 ProteinModelPortal:E2R1A0 PRIDE:E2R1A0
Ensembl:ENSCAFT00000004010 OMA:EGNESAP NextBio:20892779
Uniprot:E2R1A0
Length = 359
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 71 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 125
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 126 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 173
Score = 224 (83.9 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 71 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 125
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 126 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 154
>UNIPROTKB|P67809 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0051781 "positive regulation of
cell division" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0051154
"negative regulation of striated muscle cell differentiation"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA;TAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA;NAS] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=NAS] [GO:0003723 "RNA
binding" evidence=IDA;NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] Reactome:REACT_71 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0045892 GO:GO:0005576 GO:GO:0005654
GO:GO:0051781 GO:GO:0001701 Reactome:REACT_1675 GO:GO:0003700
GO:GO:0003723 GO:GO:0000122 GO:GO:0006366 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Pathway_Interaction_DB:ptp1bpathway GO:GO:0000398 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 PIR:I39382 CTD:4904
KO:K09276 EMBL:M24070 EMBL:J03827 EMBL:M83234 EMBL:L28809
EMBL:BC002411 EMBL:BC010430 EMBL:BC015208 EMBL:BC038384
EMBL:BC065571 EMBL:BC070084 EMBL:BC071708 EMBL:BC090038
EMBL:BC098435 EMBL:BC106045 IPI:IPI00031812 PIR:S34426
RefSeq:NP_004550.2 UniGene:Hs.473583 PDB:1H95 PDBsum:1H95
ProteinModelPortal:P67809 SMR:P67809 DIP:DIP-29405N IntAct:P67809
MINT:MINT-5001202 STRING:P67809 PhosphoSite:P67809 DMDM:54040031
PaxDb:P67809 PRIDE:P67809 DNASU:4904 Ensembl:ENST00000321358
GeneID:4904 KEGG:hsa:4904 UCSC:uc001chs.3 GeneCards:GC01P043148
H-InvDB:HIX0037767 H-InvDB:HIX0172381 HGNC:HGNC:8014 HPA:CAB005875
HPA:HPA040304 MIM:154030 neXtProt:NX_P67809 PharmGKB:PA31791
InParanoid:P67809 OMA:VEGADNQ PhylomeDB:P67809
EvolutionaryTrace:P67809 GenomeRNAi:4904 NextBio:18871
PMAP-CutDB:P67809 ArrayExpress:P67809 Bgee:P67809 CleanEx:HS_YBX1
Genevestigator:P67809 GermOnline:ENSG00000065978 Uniprot:P67809
Length = 324
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 138
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 119
>UNIPROTKB|Q28618 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9986 "Oryctolagus cuniculus" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISS]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0051781
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 eggNOG:NOG326255 EMBL:U16821
PIR:A55971 RefSeq:NP_001076254.1 UniGene:Ocu.6201
ProteinModelPortal:Q28618 SMR:Q28618 GeneID:100009583
Uniprot:Q28618
Length = 324
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 138
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 119
>MGI|MGI:99146 [details] [associations]
symbol:Ybx1 "Y box protein 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IGI;ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=IGI;IMP] [GO:0002039 "p53 binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=IEA] [GO:0005634 "nucleus"
evidence=IGI;ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IDA] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:99146 GO:GO:0005576
GO:GO:0008380 GO:GO:0051781 GO:GO:0001701 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 CTD:4904 KO:K09276
OMA:VEGADNQ EMBL:M60419 EMBL:M62867 EMBL:X57621 EMBL:BC013450
EMBL:BC013620 EMBL:BC029747 EMBL:BC031472 EMBL:BC061634
IPI:IPI00120886 PIR:I58195 RefSeq:NP_035862.2 UniGene:Mm.258204
ProteinModelPortal:P62960 SMR:P62960 DIP:DIP-34256N IntAct:P62960
MINT:MINT-1212991 STRING:P62960 PhosphoSite:P62960 PaxDb:P62960
PRIDE:P62960 Ensembl:ENSMUST00000079644 GeneID:22608 KEGG:mmu:22608
InParanoid:P62960 ChiTaRS:YBX1 NextBio:302963 Bgee:P62960
CleanEx:MM_YBX1 Genevestigator:P62960 GermOnline:ENSMUSG00000028639
Uniprot:P62960
Length = 322
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 89 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 136
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 89 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 117
>RGD|61843 [details] [associations]
symbol:Ybx1 "Y box binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0002039 "p53 binding"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008284 "positive
regulation of cell proliferation" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO;ISS] [GO:0030425 "dendrite" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043066 "negative
regulation of apoptotic process" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=IMP] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=ISO] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO;ISS] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=ISO;ISS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:61843 GO:GO:0048471 GO:GO:0043066
GO:GO:0005576 GO:GO:0008380 GO:GO:0008284 GO:GO:0051781
GO:GO:0030425 GO:GO:0043565 GO:GO:0003729 GO:GO:0006397
GO:GO:0045944 GO:GO:0006351 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046627
GO:GO:0010494 GO:GO:0002039 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 KO:K09276 EMBL:M57299
EMBL:M69138 EMBL:D13309 EMBL:BC072486 EMBL:BC098672 IPI:IPI00551815
PIR:A23677 RefSeq:NP_113751.3 UniGene:Rn.110976 UniGene:Rn.194909
ProteinModelPortal:P62961 SMR:P62961 IntAct:P62961
PhosphoSite:P62961 PRIDE:P62961 GeneID:500538 KEGG:rno:500538
UCSC:RGD:61843 InParanoid:P62961 NextBio:706472 ArrayExpress:P62961
Genevestigator:P62961 GermOnline:ENSRNOG00000032902 Uniprot:P62961
Length = 322
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 89 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 136
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 89 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 117
>RGD|6486912 [details] [associations]
symbol:LOC100912427 "nuclease-sensitive element-binding protein
1-like" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:6486912 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 OMA:VEGADNQ IPI:IPI00568666
RefSeq:XP_003749029.1 Ensembl:ENSRNOT00000058700 GeneID:100912427
KEGG:rno:100912427 ArrayExpress:F1LPL7 Uniprot:F1LPL7
Length = 322
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 89 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 136
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 89 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 117
>UNIPROTKB|F1SFU0 [details] [associations]
symbol:LOC100736899 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:CU681851
Ensembl:ENSSSCT00000019522 OMA:XKERAPL Uniprot:F1SFU0
Length = 365
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 55/106 (51%), Positives = 76/106 (71%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T A T + P+ +++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTSAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNPRK +++ +GETVEFD+++G+KG EA NVTGP G V+GS++
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRY 175
Score = 230 (86.0 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 45/87 (51%), Positives = 62/87 (71%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T A T + P+ S++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTSAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKG 261
NNPRK +++ +GETVEFD+++G+KG
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKG 156
>UNIPROTKB|I3LCJ2 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0007286 GO:GO:0017148 GO:GO:0003677 GO:GO:0048477
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100
GeneTree:ENSGT00390000009256 KO:K09277 OMA:MEGTDGV EMBL:FP565181
RefSeq:XP_003131986.2 Ensembl:ENSSSCT00000022529 GeneID:100519387
KEGG:ssc:100519387 Uniprot:I3LCJ2
Length = 360
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 55/106 (51%), Positives = 76/106 (71%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T A T + P+ +++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTSAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNPRK +++ +GETVEFD+++G+KG EA NVTGP G V+GS++
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRY 175
Score = 230 (86.0 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 45/87 (51%), Positives = 62/87 (71%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T A T + P+ S++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTSAPPARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKG 261
NNPRK +++ +GETVEFD+++G+KG
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKG 156
>UNIPROTKB|A5D7M4 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051100 "negative regulation of binding" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0048255 "mRNA
stabilization" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0007286
GO:GO:0017148 GO:GO:0003677 GO:GO:0048477 GO:GO:0003682
GO:GO:0045182 GO:GO:0048255 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 OMA:MEGTDGV
EMBL:DAAA02048764 EMBL:BC140614 IPI:IPI00705175
RefSeq:NP_001091595.1 UniGene:Bt.62380 SMR:A5D7M4 STRING:A5D7M4
Ensembl:ENSBTAT00000012026 GeneID:614429 KEGG:bta:614429
InParanoid:A5D7M4 NextBio:20899107 Uniprot:A5D7M4
Length = 360
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 57/106 (53%), Positives = 74/106 (69%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T A TP+ P A K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTPA-PLARSQADK-PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNPRK +++ +GETVEFD+++G+KG EA NVTGP G V+GS++
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRY 175
Score = 228 (85.3 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 45/87 (51%), Positives = 62/87 (71%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T A TP+ + S++ K PV LA +V G VKWF+V++GYGFI + EDVFVH IK
Sbjct: 73 TAASGTPAPLARSQADK--PV-LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 129
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKG 261
NNPRK +++ +GETVEFD+++G+KG
Sbjct: 130 RNNPRKFLRSVGDGETVEFDVVEGEKG 156
>UNIPROTKB|F1MZ92 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0001701 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 IPI:IPI00689440 OMA:VEGADNQ EMBL:DAAA02009073
EMBL:DAAA02009074 EMBL:DAAA02009075 Ensembl:ENSBTAT00000023094
ArrayExpress:F1MZ92 Uniprot:F1MZ92
Length = 324
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSKAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 138
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 45/89 (50%), Positives = 60/89 (67%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSKAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 90
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 119
>UNIPROTKB|P45441 [details] [associations]
symbol:ybx2-b "Y-box-binding protein 2-B" species:8355
"Xenopus laevis" [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006417 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M80257
EMBL:BC155913 PIR:A41786 RefSeq:NP_001081167.1 UniGene:Xl.7706
ProteinModelPortal:P45441 SMR:P45441 PRIDE:P45441 GeneID:394429
KEGG:xla:394429 CTD:394429 Xenbase:XB-GENE-6254213 Uniprot:P45441
Length = 324
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 55/97 (56%), Positives = 71/97 (73%)
Query: 17 PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 76
P N+ KK +LAT+V G VKWF+V++GYGFI S EDVFVH IK NNPRK +
Sbjct: 28 PPRNQINKK---LLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLR 84
Query: 77 TLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
++ +GETVEFD+++G+KG EA NVTGP G V+GS+F
Sbjct: 85 SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRF 121
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 43/90 (47%), Positives = 59/90 (65%)
Query: 175 TKAEATPSNPSASESPKKEPV---VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSK 231
T+ E P P + + +LAT+V G VKWF+V++GYGFI S EDVFVH
Sbjct: 13 TQPEPAPEIHKPDIVPPRNQINKKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQT 72
Query: 232 RIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 73 AIKKNNPRKFLRSVGDGETVEFDVVEGEKG 102
>UNIPROTKB|J9NTJ7 [details] [associations]
symbol:LOC474472 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026560
Ensembl:ENSCAFT00000027380 OMA:ARKEDTH Uniprot:J9NTJ7
Length = 322
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 56/108 (51%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGSLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK N+PRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 89 IKKNHPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 136
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 44/89 (49%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGSLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK N+PRK +++ +GETVEFD+++G+KG
Sbjct: 89 IKKNHPRKYLRSVGDGETVEFDVVEGEKG 117
>UNIPROTKB|E9PTV8 [details] [associations]
symbol:E9PTV8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00551815
OMA:EGNESAP PRIDE:E9PTV8 Ensembl:ENSRNOT00000015875
ArrayExpress:E9PTV8 Uniprot:E9PTV8
Length = 326
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 56/108 (51%), Positives = 75/108 (69%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVE+D+++G+KG EA NVTGP G VQGS++
Sbjct: 89 IKKNNPRKYLRSVGDGETVEYDVVEGEKGAEAANVTGPGGVPVQGSKY 136
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 44/89 (49%), Positives = 61/89 (68%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 34 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTA 88
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVE+D+++G+KG
Sbjct: 89 IKKNNPRKYLRSVGDGETVEYDVVEGEKG 117
>UNIPROTKB|P21574 [details] [associations]
symbol:ybx2-a "Y-box-binding protein 2-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IPI] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0045893
GO:GO:0043565 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M59454 EMBL:BC155914
EMBL:BC169704 EMBL:BC169706 PIR:B38274 RefSeq:NP_001081274.1
UniGene:Xl.787 ProteinModelPortal:P21574 PRIDE:P21574 GeneID:397746
KEGG:xla:397746 CTD:397746 Xenbase:XB-GENE-6252609 Uniprot:P21574
Length = 336
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 54/94 (57%), Positives = 71/94 (75%)
Query: 20 NESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLA 79
N++ KK VLAT+V G VKWF+V++GYGFI + EDVFVH IK NNPRK +++
Sbjct: 31 NQANKK---VLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVG 87
Query: 80 EGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+GETVEFD+++G+KG EA NVTGP G V+GS+F
Sbjct: 88 DGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRF 121
Score = 219 (82.2 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 181 PSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRK 240
P +A K+ VLAT+V G VKWF+V++GYGFI + EDVFVH IK NNPRK
Sbjct: 24 PGIAAARNQANKK--VLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRK 81
Query: 241 LYKTLAEGETVEFDIMQGDKG 261
+++ +GETVEFD+++G+KG
Sbjct: 82 FLRSVGDGETVEFDVVEGEKG 102
>UNIPROTKB|F1PB10 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 OMA:ENQQATS GeneTree:ENSGT00390000009256
EMBL:AAEX03015257 EMBL:AAEX03015256 Ensembl:ENSCAFT00000021267
Uniprot:F1PB10
Length = 370
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 51/85 (60%), Positives = 66/85 (77%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 86 VPATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQF 113
++G+KG EA NVTGPDG V+GS++
Sbjct: 146 VEGEKGAEAANVTGPDGVPVEGSRY 170
Score = 216 (81.1 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+
Sbjct: 86 VPATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145
Query: 256 MQGDKG 261
++G+KG
Sbjct: 146 VEGEKG 151
>UNIPROTKB|J9NYZ2 [details] [associations]
symbol:J9NYZ2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
OMA:GGPQDQR Ensembl:ENSCAFT00000048266 Uniprot:J9NYZ2
Length = 316
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 54/104 (51%), Positives = 73/104 (70%)
Query: 11 EATPSNPSANESPKKEPV-VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN 69
+A P N +A + K P V+A +V G VKWF+VK+GYGFI+ + EDVFVH I N
Sbjct: 45 DAIPKNTAAAGAKGKVPQKVIAKRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRN 104
Query: 70 NPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NP K +++ +GETVEFD++QG++G EA NVTGP G VQGS++
Sbjct: 105 NPHKYQRSVGDGETVEFDVVQGERGTEAANVTGPAGAPVQGSRY 148
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 42/87 (48%), Positives = 61/87 (70%)
Query: 178 EATPSNPSASESPKKEPV-VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN 236
+A P N +A+ + K P V+A +V G VKWF+VK+GYGFI+ + EDVFVH I N
Sbjct: 45 DAIPKNTAAAGAKGKVPQKVIAKRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRN 104
Query: 237 NPRKLYKTLAEGETVEFDIMQGDKGNQ 263
NP K +++ +GETVEFD++QG++G +
Sbjct: 105 NPHKYQRSVGDGETVEFDVVQGERGTE 131
>UNIPROTKB|J9P9A0 [details] [associations]
symbol:J9P9A0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03001199
OMA:QPREDSK Ensembl:ENSCAFT00000048533 Uniprot:J9P9A0
Length = 257
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/107 (51%), Positives = 74/107 (69%)
Query: 7 GTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRI 66
GT T + P+ + KK V+ATKV G VKWF+V++GYGF+ S EDVF H I
Sbjct: 26 GTTGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFLNRNDSKEDVFAHQTAI 80
Query: 67 KYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
K N+PRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 81 KKNHPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 127
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 43/88 (48%), Positives = 60/88 (68%)
Query: 174 GTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRI 233
GT T + P+ + KK V+ATKV G VKWF+V++GYGF+ S EDVF H I
Sbjct: 26 GTTGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFLNRNDSKEDVFAHQTAI 80
Query: 234 KYNNPRKLYKTLAEGETVEFDIMQGDKG 261
K N+PRK +++ +GETVEFD+++G+KG
Sbjct: 81 KKNHPRKYLRSVGDGETVEFDVVEGEKG 108
>UNIPROTKB|F1NQ33 [details] [associations]
symbol:F1NQ33 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AADN02037767
EMBL:AADN02037762 EMBL:AADN02037763 EMBL:AADN02037764
EMBL:AADN02037765 EMBL:AADN02037766 IPI:IPI00819532
Ensembl:ENSGALT00000037028 ArrayExpress:F1NQ33 Uniprot:F1NQ33
Length = 104
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 50/83 (60%), Positives = 65/83 (78%)
Query: 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90
ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 91 GDKGHEAINVTGPDGRHVQGSQF 113
G+KG EA NVTGPDG V+GS++
Sbjct: 61 GEKGAEAANVTGPDGVPVEGSRY 83
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 257
ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 258 GDKG 261
G+KG
Sbjct: 61 GEKG 64
>UNIPROTKB|F1LY12 [details] [associations]
symbol:F1LY12 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00780136 Ensembl:ENSRNOT00000030974
ArrayExpress:F1LY12 Uniprot:F1LY12
Length = 292
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 50/85 (58%), Positives = 66/85 (77%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVE+D+
Sbjct: 22 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDV 81
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQF 113
++G+KG EA NVTGP G VQGS++
Sbjct: 82 VEGEKGAEAANVTGPGGVPVQGSKY 106
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 38/66 (57%), Positives = 52/66 (78%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVE+D+
Sbjct: 22 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDV 81
Query: 256 MQGDKG 261
++G+KG
Sbjct: 82 VEGEKG 87
>FB|FBgn0022959 [details] [associations]
symbol:yps "ypsilon schachtel" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0048477 "oogenesis" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0003729 GO:GO:0048477 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR019844 HSSP:O54310 EMBL:U49120
ProteinModelPortal:O46173 SMR:O46173 IntAct:O46173 STRING:O46173
PaxDb:O46173 PRIDE:O46173 FlyBase:FBgn0022959 eggNOG:NOG317970
InParanoid:O46173 OrthoDB:EOG4MPG6H ChiTaRS:yps ArrayExpress:O46173
Bgee:O46173 Uniprot:O46173
Length = 359
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 54/91 (59%), Positives = 67/91 (73%)
Query: 23 PKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGE 82
P KE V+ATKV G VKWF+VKSGYGFI + EDVFVH I NNP+K +++ +GE
Sbjct: 54 PTKE--VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGE 110
Query: 83 TVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
VEFD++ G+KG+EA NVTGP G V+GSQF
Sbjct: 111 VVEFDVVIGEKGNEAANVTGPSGEPVRGSQF 141
Score = 215 (80.7 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 190 PKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGE 249
P KE V+ATKV G VKWF+VKSGYGFI + EDVFVH I NNP+K +++ +GE
Sbjct: 54 PTKE--VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGE 110
Query: 250 TVEFDIMQGDKGNQ 263
VEFD++ G+KGN+
Sbjct: 111 VVEFDVVIGEKGNE 124
>UNIPROTKB|F1NFC0 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
IPI:IPI00587895 EMBL:AADN02073477 Ensembl:ENSGALT00000007741
ArrayExpress:F1NFC0 Uniprot:F1NFC0
Length = 273
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90
ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 91 GDKGHEAINVTGPDGRHVQGSQF 113
G+KG EA NVTGP G VQGS++
Sbjct: 61 GEKGAEAANVTGPGGVPVQGSKY 83
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 257
ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 258 GDKG 261
G+KG
Sbjct: 61 GEKG 64
>UNIPROTKB|F1NKY2 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
EMBL:AADN02073477 IPI:IPI00819706 Ensembl:ENSGALT00000039197
ArrayExpress:F1NKY2 Uniprot:F1NKY2
Length = 269
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90
ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 91 GDKGHEAINVTGPDGRHVQGSQF 113
G+KG EA NVTGP G VQGS++
Sbjct: 61 GEKGAEAANVTGPGGVPVQGSKY 83
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 257
ATKV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 258 GDKG 261
G+KG
Sbjct: 61 GEKG 64
>UNIPROTKB|F1PF55 [details] [associations]
symbol:F1PF55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026166 Uniprot:F1PF55
Length = 216
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 53/106 (50%), Positives = 70/106 (66%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
T EA P + K V+A +V G VKWF+VK+GYGFI+ + EDVFVH I
Sbjct: 5 TVHEARGRLPGPSAEGKVPQKVIAKRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAIT 64
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNP K +++ +GETVEFD++QG++G EA NVTGP G VQGS++
Sbjct: 65 RNNPHKYQRSVGDGETVEFDVVQGERGTEAANVTGPAGAPVQGSRY 110
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 42/89 (47%), Positives = 57/89 (64%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
T EA P S K V+A +V G VKWF+VK+GYGFI+ + EDVFVH I
Sbjct: 5 TVHEARGRLPGPSAEGKVPQKVIAKRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAIT 64
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKGNQ 263
NNP K +++ +GETVEFD++QG++G +
Sbjct: 65 RNNPHKYQRSVGDGETVEFDVVQGERGTE 93
>UNIPROTKB|F1PF53 [details] [associations]
symbol:F1PF53 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026168 OMA:ERESDWQ
Uniprot:F1PF53
Length = 231
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 20 NESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLA 79
N+ K V+A +V G VKWF+VK+GYGFI+ + EDVFVH I NNP K +++
Sbjct: 3 NKQRKVPQKVIAKRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVG 62
Query: 80 EGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+GETVEFD++QG++G EA NVTGP G VQGS++
Sbjct: 63 DGETVEFDVVQGERGTEAANVTGPAGAPVQGSRY 96
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 191 KKEPV-VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGE 249
+K P V+A +V G VKWF+VK+GYGFI+ + EDVFVH I NNP K +++ +GE
Sbjct: 6 RKVPQKVIAKRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGE 65
Query: 250 TVEFDIMQGDKGNQ 263
TVEFD++QG++G +
Sbjct: 66 TVEFDVVQGERGTE 79
>WB|WBGene00000472 [details] [associations]
symbol:cey-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 OMA:CFKCGEP EMBL:Z81525
GeneTree:ENSGT00390000009256 HSSP:P41016 PIR:T21689
RefSeq:NP_496366.1 ProteinModelPortal:O62213 SMR:O62213
DIP:DIP-26200N IntAct:O62213 MINT:MINT-1068354 STRING:O62213
PaxDb:O62213 EnsemblMetazoa:F33A8.3.1 EnsemblMetazoa:F33A8.3.2
GeneID:174690 KEGG:cel:CELE_F33A8.3 CTD:174690 WormBase:F33A8.3
HOGENOM:HOG000016800 InParanoid:O62213 NextBio:885082
Uniprot:O62213
Length = 208
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 52/93 (55%), Positives = 65/93 (69%)
Query: 21 ESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAE 80
E P +PV ATKV G VKWF+VK+GYGFI +NED+FVH I NNP K ++L +
Sbjct: 9 EQPADKPVK-ATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGD 67
Query: 81 GETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
E V FDI++G KG EA +VTGPDG VQGS++
Sbjct: 68 NEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKY 100
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 40/75 (53%), Positives = 51/75 (68%)
Query: 187 SESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLA 246
+E P +PV ATKV G VKWF+VK+GYGFI +NED+FVH I NNP K ++L
Sbjct: 8 AEQPADKPVK-ATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLG 66
Query: 247 EGETVEFDIMQGDKG 261
+ E V FDI++G KG
Sbjct: 67 DNEEVMFDIVEGSKG 81
>UNIPROTKB|F1M0E9 [details] [associations]
symbol:F1M0E9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AC118318
IPI:IPI00781417 Ensembl:ENSRNOT00000011205 Uniprot:F1M0E9
Length = 311
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 55/106 (51%), Positives = 73/106 (68%)
Query: 8 TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 67
TK +T S SA + + V+ ATKV G VK F+V++GYGFI + EDVFVH IK
Sbjct: 23 TKPRSTGSLTSAAPASGDKKVI-ATKVLGTVK-FNVRNGYGFINRNDTKEDVFVHQTAIK 80
Query: 68 YNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNP K +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 81 KNNPSKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 126
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 43/87 (49%), Positives = 60/87 (68%)
Query: 175 TKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIK 234
TK +T S SA+ + + V+ ATKV G VK F+V++GYGFI + EDVFVH IK
Sbjct: 23 TKPRSTGSLTSAAPASGDKKVI-ATKVLGTVK-FNVRNGYGFINRNDTKEDVFVHQTAIK 80
Query: 235 YNNPRKLYKTLAEGETVEFDIMQGDKG 261
NNP K +++ +GETVEFD+++G+KG
Sbjct: 81 KNNPSKYLRSVGDGETVEFDVVEGEKG 107
>UNIPROTKB|F1S319 [details] [associations]
symbol:F1S319 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU914460 Ensembl:ENSSSCT00000016681 Uniprot:F1S319
Length = 238
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 47/89 (52%), Positives = 64/89 (71%)
Query: 25 KEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETV 84
++ ++ TKV G VKW SV++GYGFI + EDVFV+ IK NNPRK ++ +GET
Sbjct: 34 RDKKIITTKVLGTVKWLSVRNGYGFINGNDTKEDVFVYQTAIKNNNPRKYLHSIGDGETA 93
Query: 85 EFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
EFD+++G+KG EA NVTGP G VQGS++
Sbjct: 94 EFDVVEGEKGAEAANVTGPGGV-VQGSKY 121
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 192 KEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETV 251
++ ++ TKV G VKW SV++GYGFI + EDVFV+ IK NNPRK ++ +GET
Sbjct: 34 RDKKIITTKVLGTVKWLSVRNGYGFINGNDTKEDVFVYQTAIKNNNPRKYLHSIGDGETA 93
Query: 252 EFDIMQGDKG 261
EFD+++G+KG
Sbjct: 94 EFDVVEGEKG 103
>UNIPROTKB|F1RWB7 [details] [associations]
symbol:F1RWB7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0051154 "negative regulation of striated muscle
cell differentiation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 EMBL:CU693419
Ensembl:ENSSSCT00000009700 OMA:QPREDSK Uniprot:F1RWB7
Length = 302
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V A KV G VKWF+V++GYGFI + EDVFVH IK NNPRK +++ +GE VEFD+
Sbjct: 58 VFAAKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDV 117
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQF 113
++G++ EA N TGP G VQGS++
Sbjct: 118 VEGEESAEAANFTGPGGVGVQGSKY 142
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 179 ATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNP 238
A P +++ + V A KV G VKWF+V++GYGFI + EDVFVH IK NNP
Sbjct: 41 AAPGGLTSAAPAGGDKKVFAAKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 100
Query: 239 RKLYKTLAEGETVEFDIMQGDK 260
RK +++ +GE VEFD+++G++
Sbjct: 101 RKYLRSVGDGEIVEFDVVEGEE 122
>UNIPROTKB|F1LTA0 [details] [associations]
symbol:F1LTA0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00950360
Ensembl:ENSRNOT00000065381 ArrayExpress:F1LTA0 Uniprot:F1LTA0
Length = 236
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 50/103 (48%), Positives = 67/103 (65%)
Query: 10 AEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN 69
A TPS P ++V G+VKWF+V+ GYGFI + + EDVFVH IK N
Sbjct: 4 APLTPS-PGCPHDDSACRQAQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKN 62
Query: 70 NPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
PRK +++ +GETVEF++++G+KG EA NVTGP G VQGS+
Sbjct: 63 KPRKYLRSVGDGETVEFEVVEGEKGVEAANVTGPGGVPVQGSK 105
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 177 AEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN 236
A TPS P ++V G+VKWF+V+ GYGFI + + EDVFVH IK N
Sbjct: 4 APLTPS-PGCPHDDSACRQAQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKN 62
Query: 237 NPRKLYKTLAEGETVEFDIMQGDKG 261
PRK +++ +GETVEF++++G+KG
Sbjct: 63 KPRKYLRSVGDGETVEFEVVEGEKG 87
>UNIPROTKB|F1M1Q9 [details] [associations]
symbol:F1M1Q9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00949180
Ensembl:ENSRNOT00000068194 ArrayExpress:F1M1Q9 Uniprot:F1M1Q9
Length = 277
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 50/103 (48%), Positives = 67/103 (65%)
Query: 10 AEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN 69
A TPS P ++V G+VKWF+V+ GYGFI + + EDVFVH IK N
Sbjct: 17 APLTPS-PGCPHDDSACRQAQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKN 75
Query: 70 NPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
PRK +++ +GETVEF++++G+KG EA NVTGP G VQGS+
Sbjct: 76 KPRKYLRSVGDGETVEFEVVEGEKGVEAANVTGPGGVPVQGSK 118
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 177 AEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYN 236
A TPS P ++V G+VKWF+V+ GYGFI + + EDVFVH IK N
Sbjct: 17 APLTPS-PGCPHDDSACRQAQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKN 75
Query: 237 NPRKLYKTLAEGETVEFDIMQGDKG 261
PRK +++ +GETVEF++++G+KG
Sbjct: 76 KPRKYLRSVGDGETVEFEVVEGEKG 100
>UNIPROTKB|F1NA94 [details] [associations]
symbol:F1NA94 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00581805 Ensembl:ENSGALT00000023812 ArrayExpress:F1NA94
Uniprot:F1NA94
Length = 214
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 45/83 (54%), Positives = 61/83 (73%)
Query: 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90
ATKV G VKWF+V++GYGFI + V + IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRYVARHSVNLDPTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 91 GDKGHEAINVTGPDGRHVQGSQF 113
G+KG EA NVTGPDG V+GS++
Sbjct: 61 GEKGAEAANVTGPDGVPVEGSRY 83
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 257
ATKV G VKWF+V++GYGFI + V + IK NNPRK +++ +GETVEFD+++
Sbjct: 1 ATKVLGTVKWFNVRNGYGFINRYVARHSVNLDPTAIKKNNPRKYLRSVGDGETVEFDVVE 60
Query: 258 GDKG 261
G+KG
Sbjct: 61 GEKG 64
>UNIPROTKB|F1RZ18 [details] [associations]
symbol:F1RZ18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:FP102825 Ensembl:ENSSSCT00000014024 Uniprot:F1RZ18
Length = 302
Score = 216 (81.1 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 22 SPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEG 81
+P V++TKV VKW++V++GYGF + + +FVH IK NNPRK ++ +G
Sbjct: 40 APSSRDKVISTKVLRTVKWYNVRNGYGFNRN-DTKKYIFVHQTAIKKNNPRKYLHSVEDG 98
Query: 82 ETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
ETVEFDI++G+KG A NVTGP G VQ ++
Sbjct: 99 ETVEFDIVEGEKGRAA-NVTGPGGVSVQCGKY 129
Score = 183 (69.5 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 34/73 (46%), Positives = 50/73 (68%)
Query: 189 SPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEG 248
+P V++TKV VKW++V++GYGF + + +FVH IK NNPRK ++ +G
Sbjct: 40 APSSRDKVISTKVLRTVKWYNVRNGYGFNRN-DTKKYIFVHQTAIKKNNPRKYLHSVEDG 98
Query: 249 ETVEFDIMQGDKG 261
ETVEFDI++G+KG
Sbjct: 99 ETVEFDIVEGEKG 111
Score = 38 (18.4 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 217 IATPSSNEDVFVHSKRIKYNNP 238
+A P + +H++ + Y+NP
Sbjct: 174 LALPQAKIATLLHAETLWYSNP 195
>UNIPROTKB|F1LUS5 [details] [associations]
symbol:F1LUS5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GeneTree:ENSGT00390000009256 IPI:IPI00566025
Ensembl:ENSRNOT00000032550 Uniprot:F1LUS5
Length = 210
Score = 199 (75.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 42/90 (46%), Positives = 58/90 (64%)
Query: 24 KKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGET 83
+KE VV T++ + S+++ YG++ SS DVFVH IK NNPRK T + ET
Sbjct: 20 RKEKVV-CTEIFTIRMELSLRNIYGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRET 78
Query: 84 VEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
VEFD+++G+K EA N+ GP G VQGSQ+
Sbjct: 79 VEFDVIEGEKDAEAANIIGPGG--VQGSQY 106
Score = 152 (58.6 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 191 KKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGET 250
+KE VV T++ + S+++ YG++ SS DVFVH IK NNPRK T + ET
Sbjct: 20 RKEKVV-CTEIFTIRMELSLRNIYGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRET 78
Query: 251 VEFDIMQGDK 260
VEFD+++G+K
Sbjct: 79 VEFDVIEGEK 88
Score = 38 (18.4 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 165 FCCLQMCDSGTKAEATPSNP 184
+C Q +SG K E + S P
Sbjct: 116 YCNYQNSESGEKNEGSESAP 135
>UNIPROTKB|F1NMZ8 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0051154 "negative
regulation of striated muscle cell differentiation" evidence=IEA]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 OMA:VEGADNQ EMBL:AADN02073477 IPI:IPI00683264
Ensembl:ENSGALT00000039185 ArrayExpress:F1NMZ8 Uniprot:F1NMZ8
Length = 288
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 41/72 (56%), Positives = 55/72 (76%)
Query: 42 SVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVT 101
+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++G+KG EA NVT
Sbjct: 10 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 69
Query: 102 GPDGRHVQGSQF 113
GP G VQGS++
Sbjct: 70 GPGGVPVQGSKY 81
Score = 166 (63.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 29/53 (54%), Positives = 41/53 (77%)
Query: 209 SVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
+V++GYGFI + EDVFVH IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 10 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 62
>UNIPROTKB|F1PZ69 [details] [associations]
symbol:F1PZ69 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 EMBL:AAEX03013316
Ensembl:ENSCAFT00000008808 Uniprot:F1PZ69
Length = 306
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 45/86 (52%), Positives = 57/86 (66%)
Query: 29 VLATKVCGVVKWFSVKSG-YGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFD 87
V+A KV G VKWFSV++G YG I + ED F H IK NNPRK ++ +G+TVEFD
Sbjct: 46 VIARKVLGTVKWFSVRNGGYGLINRNDTKEDAFAHQTAIKKNNPRKYLCSVGDGDTVEFD 105
Query: 88 IMQGDKGHEAINVTGPDGRHVQGSQF 113
+ +G+KG EA V GP G VQGS +
Sbjct: 106 VAEGEKGAEAAPV-GPGGVPVQGSTY 130
Score = 188 (71.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 37/76 (48%), Positives = 49/76 (64%)
Query: 187 SESPKKEPVVLATKVCGVVKWFSVKSG-YGFIATPSSNEDVFVHSKRIKYNNPRKLYKTL 245
S +P V+A KV G VKWFSV++G YG I + ED F H IK NNPRK ++
Sbjct: 37 SAAPAGGDKVIARKVLGTVKWFSVRNGGYGLINRNDTKEDAFAHQTAIKKNNPRKYLCSV 96
Query: 246 AEGETVEFDIMQGDKG 261
+G+TVEFD+ +G+KG
Sbjct: 97 GDGDTVEFDVAEGEKG 112
>UNIPROTKB|G3X6E4 [details] [associations]
symbol:G3X6E4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 OMA:ERESDWQ
EMBL:DAAA02073461 Ensembl:ENSBTAT00000005429 Uniprot:G3X6E4
Length = 245
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 46/106 (43%), Positives = 63/106 (59%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
+G T + + ++PKK V+A +V G V WF K GYGFI + EDVFVH
Sbjct: 19 NGDGIPKTTTRGAKGKAPKK---VIAKRVLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTA 75
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGS 111
I P K ++ +GETVEFD++QG++G EA VTGP G ++GS
Sbjct: 76 ITGETPCKYRGSVDDGETVEFDVVQGERGTEAAKVTGPAGVPLKGS 121
Score = 177 (67.4 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
+G T + + ++PKK V+A +V G V WF K GYGFI + EDVFVH
Sbjct: 19 NGDGIPKTTTRGAKGKAPKK---VIAKRVLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTA 75
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKGNQ 263
I P K ++ +GETVEFD++QG++G +
Sbjct: 76 ITGETPCKYRGSVDDGETVEFDVVQGERGTE 106
>UNIPROTKB|G3N0T3 [details] [associations]
symbol:G3N0T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073368
Ensembl:ENSBTAT00000064453 OMA:GGPQDQR Uniprot:G3N0T3
Length = 239
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 23 PKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGE 82
PKK V++ +V G V WF K GYGFI+ + EDVFVH I NP ++ +GE
Sbjct: 17 PKK---VISKRVLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGE 73
Query: 83 TVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
VEFD++QG+ G EA NVTGP G ++GS++
Sbjct: 74 MVEFDVVQGEWGTEAANVTGPAGAPLKGSRY 104
Score = 161 (61.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 190 PKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGE 249
PKK V++ +V G V WF K GYGFI+ + EDVFVH I NP ++ +GE
Sbjct: 17 PKK---VISKRVLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGE 73
Query: 250 TVEFDIMQGDKGNQ 263
VEFD++QG+ G +
Sbjct: 74 MVEFDVVQGEWGTE 87
>WB|WBGene00000475 [details] [associations]
symbol:cey-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021
GeneTree:ENSGT00390000009256 EMBL:AL023839 EMBL:Z73424 PIR:T19920
RefSeq:NP_499393.1 HSSP:P41016 ProteinModelPortal:G5EDV3 SMR:G5EDV3
IntAct:G5EDV3 EnsemblMetazoa:Y39A1C.3.1 EnsemblMetazoa:Y39A1C.3.2
GeneID:176516 KEGG:cel:CELE_Y39A1C.3 CTD:176516 WormBase:Y39A1C.3
OMA:VFDIVEG NextBio:892912 Uniprot:G5EDV3
Length = 294
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 47/89 (52%), Positives = 60/89 (67%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIAT--PSS-NEDVFVHSKRIKYNNPRKLY-KTLAEGETV 84
V+ T V G VKWFSV+ YGF+A P+ NED FVH I ++ K Y +TL + E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 85 EFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
FDI++G KG EA NVTGPDG +V+GS+F
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRF 172
Score = 141 (54.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIAT--PSS-NEDVFVHSKRIKYNNPRKLY-KTLAEGETV 251
V+ T V G VKWFSV+ YGF+A P+ NED FVH I ++ K Y +TL + E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 252 EFDIMQGDKG 261
FDI++G KG
Sbjct: 144 VFDIVEGLKG 153
>UNIPROTKB|I3LFV4 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0001701 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
GeneTree:ENSGT00390000009256 GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 OMA:VEGADNQ EMBL:CU929642
EMBL:CU467721 Ensembl:ENSSSCT00000026666 Uniprot:I3LFV4
Length = 324
Score = 209 (78.6 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 45/108 (41%), Positives = 64/108 (59%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG T + P+ + KK V+ K+ + WF ++ + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIGNKILESMIWFLQNKFDAYLKLNDTKEDVFVHQTA 90
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 138
Score = 152 (58.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG T + P+ + KK V+ K+ + WF ++ + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIGNKILESMIWFLQNKFDAYLKLNDTKEDVFVHQTA 90
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 91 IKKNNPRKYLRSVGDGETVEFDVVEGEKG 119
>WB|WBGene00000474 [details] [associations]
symbol:cey-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 HSSP:P41016 EMBL:FO081398
HOGENOM:HOG000016644 PIR:T29322 RefSeq:NP_491631.1
ProteinModelPortal:P91398 SMR:P91398 STRING:P91398 PaxDb:P91398
EnsemblMetazoa:M01E11.5.1 EnsemblMetazoa:M01E11.5.2 GeneID:172211
KEGG:cel:CELE_M01E11.5 UCSC:M01E11.5.1 CTD:172211 WormBase:M01E11.5
InParanoid:P91398 OMA:FDSKETE NextBio:874515 Uniprot:P91398
Length = 265
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 42/94 (44%), Positives = 57/94 (60%)
Query: 21 ESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLY-KTLA 79
E +K +VL + G VKW+SV YGFI+ +DVFVH I ++ K Y +TLA
Sbjct: 51 EEEQKAKIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLA 110
Query: 80 EGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+ E V FD++ G G EA NVTGP G +V GS++
Sbjct: 111 DEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY 144
Score = 146 (56.5 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 188 ESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLY-KTLA 246
E +K +VL + G VKW+SV YGFI+ +DVFVH I ++ K Y +TLA
Sbjct: 51 EEEQKAKIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLA 110
Query: 247 EGETVEFDIMQGDKG 261
+ E V FD++ G G
Sbjct: 111 DEEEVLFDLVDGKNG 125
>UNIPROTKB|F1M549 [details] [associations]
symbol:F1M549 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
IPI:IPI00764317 Ensembl:ENSRNOT00000013847 Uniprot:F1M549
Length = 305
Score = 196 (74.1 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 49/110 (44%), Positives = 69/110 (62%)
Query: 4 CDSGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHS 63
C +G+ E++ S P SP + V+ KV G VKWF V++GYGFI + EDV V
Sbjct: 26 CSAGS-CESSGS-PGGLTSPGAK--VITRKVLGTVKWF-VRNGYGFINRNDTKEDVCVQQ 80
Query: 64 KRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NN RK +++ +GET EFD+++G+KG +A N TGP G VQG ++
Sbjct: 81 IAIK-NNSRKDLRSVGDGET-EFDVVEGEKG-DAENDTGPGGAPVQGRKY 127
Score = 163 (62.4 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 40/92 (43%), Positives = 58/92 (63%)
Query: 171 CDSGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHS 230
C +G+ E++ S P SP + V+ KV G VKWF V++GYGFI + EDV V
Sbjct: 26 CSAGS-CESSGS-PGGLTSPGAK--VITRKVLGTVKWF-VRNGYGFINRNDTKEDVCVQQ 80
Query: 231 KRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
IK NN RK +++ +GET EFD+++G+KG+
Sbjct: 81 IAIK-NNSRKDLRSVGDGET-EFDVVEGEKGD 110
>WB|WBGene00000473 [details] [associations]
symbol:cey-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 EMBL:FO081396 HSSP:P41016 PIR:T25767
RefSeq:NP_491645.1 ProteinModelPortal:P91306 SMR:P91306
DIP:DIP-26178N IntAct:P91306 MINT:MINT-1083994 STRING:P91306
PaxDb:P91306 EnsemblMetazoa:F46F11.2.1 EnsemblMetazoa:F46F11.2.2
GeneID:172219 KEGG:cel:CELE_F46F11.2 UCSC:F46F11.2.1 CTD:172219
WormBase:F46F11.2 HOGENOM:HOG000016644 InParanoid:P91306
OMA:VERIRIW NextBio:874555 Uniprot:P91306
Length = 267
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 21 ESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLY-KTLA 79
E +K + T + G VKW+SV YGFI+ +D+FVH I + K Y +TL
Sbjct: 53 EEEQKSKTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLG 112
Query: 80 EGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+ E V FD+++G G EA NVTGP+G +V GS++
Sbjct: 113 DDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146
Score = 136 (52.9 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 188 ESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLY-KTLA 246
E +K + T + G VKW+SV YGFI+ +D+FVH I + K Y +TL
Sbjct: 53 EEEQKSKTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLG 112
Query: 247 EGETVEFDIMQGDKG 261
+ E V FD+++G G
Sbjct: 113 DDEEVLFDLVEGKNG 127
>UNIPROTKB|F1M1T6 [details] [associations]
symbol:F1M1T6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 IPI:IPI00560842
Ensembl:ENSRNOT00000031766 ArrayExpress:F1M1T6 Uniprot:F1M1T6
Length = 309
Score = 192 (72.6 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 45/107 (42%), Positives = 64/107 (59%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
SG + T S P+ + KK V+A KV G +KWF+ ++G FI + EDVFVH
Sbjct: 37 SGGQGGLTWSAPAGGD--KK---VIARKVLGTIKWFNERNG--FINRNDTKEDVFVHQTA 89
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
+K NPRK + + +GET FD+++G+KG E +VT P G VQG +
Sbjct: 90 VKKKNPRKNLRRVGDGET-GFDVVEGEKGAEVASVTDPGGVPVQGGK 135
Score = 159 (61.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
SG + T S P+ + KK V+A KV G +KWF+ ++G FI + EDVFVH
Sbjct: 37 SGGQGGLTWSAPAGGD--KK---VIARKVLGTIKWFNERNG--FINRNDTKEDVFVHQTA 89
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFV 267
+K NPRK + + +GET FD+++G+KG + V
Sbjct: 90 VKKKNPRKNLRRVGDGET-GFDVVEGEKGAEVASV 123
>UNIPROTKB|G3N2S9 [details] [associations]
symbol:G3N2S9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073372
Ensembl:ENSBTAT00000065366 Uniprot:G3N2S9
Length = 224
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 41/92 (44%), Positives = 56/92 (60%)
Query: 22 SPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEG 81
+PKK V+A V G V F K GYGFI+ ++ EDVFVH I NP ++ G
Sbjct: 1 APKK---VIARSVLGSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENG 57
Query: 82 ETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
ETVEFD++QG++G +A VTGP ++GS +
Sbjct: 58 ETVEFDVVQGEQGTKAAKVTGPVDAPLKGSHY 89
Score = 156 (60.0 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 189 SPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEG 248
+PKK V+A V G V F K GYGFI+ ++ EDVFVH I NP ++ G
Sbjct: 1 APKK---VIARSVLGSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENG 57
Query: 249 ETVEFDIMQGDKGNQ 263
ETVEFD++QG++G +
Sbjct: 58 ETVEFDVVQGEQGTK 72
>UNIPROTKB|H0Y449 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0043231 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC098484 HGNC:HGNC:8014 ProteinModelPortal:H0Y449 PRIDE:H0Y449
Ensembl:ENST00000436427 Uniprot:H0Y449
Length = 374
Score = 191 (72.3 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 55 SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
+ EDVFVH IK NNPRK +++ +GETVEFD+++G+KG EA NVTGP G VQGS++
Sbjct: 130 TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKY 188
Score = 134 (52.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 222 SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
+ EDVFVH IK NNPRK +++ +GETVEFD+++G+KG
Sbjct: 130 TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 169
>UNIPROTKB|F1SN83 [details] [associations]
symbol:F1SN83 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000006028
Ensembl:ENSSSCT00000006029 Uniprot:F1SN83
Length = 299
Score = 186 (70.5 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 47/105 (44%), Positives = 65/105 (61%)
Query: 10 AEATPSNPSANESPKK-EPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKY 68
A T N A+ +P + V+A K+ G VK FS ++GYGFI + EDV VH+ IK
Sbjct: 19 AAVTKPNILASAAPAGWDKKVIAKKL-GTVKCFSGRNGYGFINRNDTKEDVCVHTA-IKK 76
Query: 69 NNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
NNPRK +T +GET+EFD++ G++ EA NVT G QGS++
Sbjct: 77 NNPRKYLRTKGDGETMEFDVV-GEEAGEAANVTSRGGV-AQGSKY 119
Score = 161 (61.7 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 39/86 (45%), Positives = 53/86 (61%)
Query: 177 AEATPSNPSASESPKK-EPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKY 235
A T N AS +P + V+A K+ G VK FS ++GYGFI + EDV VH+ IK
Sbjct: 19 AAVTKPNILASAAPAGWDKKVIAKKL-GTVKCFSGRNGYGFINRNDTKEDVCVHTA-IKK 76
Query: 236 NNPRKLYKTLAEGETVEFDIMQGDKG 261
NNPRK +T +GET+EFD++ + G
Sbjct: 77 NNPRKYLRTKGDGETMEFDVVGEEAG 102
>RGD|2324048 [details] [associations]
symbol:LOC100366210 "Y box binding protein 1-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
RGD:2324048 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 IPI:IPI00779316
Ensembl:ENSRNOT00000061547 OMA:SAVACRD Uniprot:F1LX40
Length = 292
Score = 184 (69.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 29 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
V+ATKV G +K V +G G I + EDVFVH +K N+PRK +++ + ETVEFD
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDF 85
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQF 113
++G+K EA +VTG G VQ S++
Sbjct: 86 VEGEKDVEAASVTGLGGVPVQDSKY 110
Score = 151 (58.2 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 196 VLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 255
V+ATKV G +K V +G G I + EDVFVH +K N+PRK +++ + ETVEFD
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDF 85
Query: 256 MQGDK 260
++G+K
Sbjct: 86 VEGEK 90
>UNIPROTKB|J9PBG2 [details] [associations]
symbol:J9PBG2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 EMBL:AAEX03013739
Ensembl:ENSCAFT00000008316 OMA:PPHNILE Uniprot:J9PBG2
Length = 271
Score = 179 (68.1 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 35/73 (47%), Positives = 51/73 (69%)
Query: 41 FSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINV 100
F+V++ YGFI + E VFVH IK +NPRK +++ +G+ VEFD+++G+KG EA NV
Sbjct: 1 FNVQNHYGFINRNDTKECVFVHQTAIKRSNPRKFLRSVGDGD-VEFDVVEGEKGAEAANV 59
Query: 101 TGPDGRHVQGSQF 113
GP G V+GS +
Sbjct: 60 PGPGGVPVKGSSY 72
Score = 133 (51.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 208 FSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
F+V++ YGFI + E VFVH IK +NPRK +++ +G+ VEFD+++G+KG
Sbjct: 1 FNVQNHYGFINRNDTKECVFVHQTAIKRSNPRKFLRSVGDGD-VEFDVVEGEKG 53
>UNIPROTKB|I3LAD3 [details] [associations]
symbol:I3LAD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000023603
Ensembl:ENSSSCT00000025195 Uniprot:I3LAD3
Length = 315
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 49/110 (44%), Positives = 65/110 (59%)
Query: 4 CDSGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHS 63
C S A A P+ KK V+A K+ G VK FS ++GYGFI + EDV VH+
Sbjct: 34 CSSDILASAAPAGWD-----KK---VIAKKL-GTVKCFSGRNGYGFINRNDTKEDVCVHT 84
Query: 64 KRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
IK NNPRK +T +GET+EFD++ G++ EA NVT G QGS++
Sbjct: 85 A-IKKNNPRKYLRTKGDGETMEFDVV-GEEAGEAANVTSRGGV-AQGSKY 131
Score = 154 (59.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 186 ASESPKK-EPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKT 244
AS +P + V+A K+ G VK FS ++GYGFI + EDV VH+ IK NNPRK +T
Sbjct: 40 ASAAPAGWDKKVIAKKL-GTVKCFSGRNGYGFINRNDTKEDVCVHTA-IKKNNPRKYLRT 97
Query: 245 LAEGETVEFDIMQGDKG 261
+GET+EFD++ + G
Sbjct: 98 KGDGETMEFDVVGEEAG 114
>UNIPROTKB|P0A9Y6 [details] [associations]
symbol:cspC species:83333 "Escherichia coli K-12"
[GO:0001072 "RNA binding transcription antitermination factor
activity" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 EMBL:L28430 EMBL:D28496 PIR:S43618 RefSeq:NP_416337.1
RefSeq:YP_490084.1 ProteinModelPortal:P0A9Y6 SMR:P0A9Y6
DIP:DIP-36183N IntAct:P0A9Y6 MINT:MINT-1218847 SWISS-2DPAGE:P0A9Y6
PaxDb:P0A9Y6 PRIDE:P0A9Y6 EnsemblBacteria:EBESCT00000000185
EnsemblBacteria:EBESCT00000017479 GeneID:12934542 GeneID:946339
KEGG:ecj:Y75_p1798 KEGG:eco:b1823 PATRIC:32118965 EchoBASE:EB2120
EcoGene:EG12204 OMA:LEEGQHV ProtClustDB:PRK10943
BioCyc:EcoCyc:EG12204-MONOMER BioCyc:ECOL316407:JW1812-MONOMER
Genevestigator:P0A9Y6 Uniprot:P0A9Y6
Length = 69
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 34/69 (49%), Positives = 44/69 (63%)
Query: 33 KVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 92
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQ 58
Query: 93 KGHEAINVT 101
KG A+NVT
Sbjct: 59 KGPAAVNVT 67
Score = 149 (57.5 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 200 KVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGD 259
K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQDGQ 58
Query: 260 KG 261
KG
Sbjct: 59 KG 60
>UNIPROTKB|F1M451 [details] [associations]
symbol:F1M451 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GeneTree:ENSGT00390000009256 IPI:IPI00569917
Ensembl:ENSRNOT00000034688 OMA:NQQPATS Uniprot:F1M451
Length = 147
Score = 160 (61.4 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 175 TKAEATPSN----PSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHS 230
T E+T SN P A S K+ V+A KV G+V WF+V++GY FI + ED FVH
Sbjct: 68 TNEESTASNAHGPPRAPTSRDKK--VIAMKVLGIVTWFNVRNGYVFINRNDTKEDTFVHQ 125
Query: 231 KRIKYNNPRKLYKTLAEGETVE 252
IK NNP+ L+ ++ +GETVE
Sbjct: 126 TVIKKNNPKYLH-SVGDGETVE 146
Score = 159 (61.0 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 8 TKAEATPSN----PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHS 63
T E+T SN P A S K+ V+A KV G+V WF+V++GY FI + ED FVH
Sbjct: 68 TNEESTASNAHGPPRAPTSRDKK--VIAMKVLGIVTWFNVRNGYVFINRNDTKEDTFVHQ 125
Query: 64 KRIKYNNPRKLYKTLAEGETVE 85
IK NNP+ L+ ++ +GETVE
Sbjct: 126 TVIKKNNPKYLH-SVGDGETVE 146
>UNIPROTKB|F1NS05 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0060964 "regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003729
GO:GO:0048863 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0010494
GeneTree:ENSGT00390000001177 IPI:IPI00573980 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW EMBL:AADN02051390
Ensembl:ENSGALT00000000529 Uniprot:F1NS05
Length = 202
Score = 159 (61.0 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 39/110 (35%), Positives = 56/110 (50%)
Query: 10 AEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS-------SNEDVFVH 62
A A P + +SPK E G+ KWF+V+ G+GF++ + S DVFVH
Sbjct: 10 AGAKPGEEPSGDSPKAENESQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVH 69
Query: 63 SKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 70 QSKLHMEG----FRSLKEGEAVEFTFKKSSKGLESIRVTGPGGVFCIGSE 115
Score = 121 (47.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 177 AEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS-------SNEDVFVH 229
A A P + +SPK E G+ KWF+V+ G+GF++ + S DVFVH
Sbjct: 10 AGAKPGEEPSGDSPKAENESQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVH 69
Query: 230 SKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
++ +++L EGE VEF + KG
Sbjct: 70 QSKLHMEG----FRSLKEGEAVEFTFKKSSKG 97
>UNIPROTKB|Q45KJ5 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 EMBL:DQ127226 IPI:IPI00573980
RefSeq:NP_001026944.2 UniGene:Gga.21004 ProteinModelPortal:Q45KJ5
SMR:Q45KJ5 GeneID:428206 KEGG:gga:428206 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 InParanoid:Q45KJ5
OrthoDB:EOG4640D4 NextBio:20829257 GO:GO:0010587 GO:GO:0031123
Uniprot:Q45KJ5
Length = 202
Score = 159 (61.0 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 39/110 (35%), Positives = 56/110 (50%)
Query: 10 AEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS-------SNEDVFVH 62
A A P + +SPK E G+ KWF+V+ G+GF++ + S DVFVH
Sbjct: 10 AGAKPGEEPSGDSPKAENESQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVH 69
Query: 63 SKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 70 QSKLHMEG----FRSLKEGEAVEFTFKKSSKGLESIRVTGPGGVFCIGSE 115
Score = 121 (47.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 177 AEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS-------SNEDVFVH 229
A A P + +SPK E G+ KWF+V+ G+GF++ + S DVFVH
Sbjct: 10 AGAKPGEEPSGDSPKAENESQPLHGSGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVH 69
Query: 230 SKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
++ +++L EGE VEF + KG
Sbjct: 70 QSKLHMEG----FRSLKEGEAVEFTFKKSSKG 97
>UNIPROTKB|P0A972 [details] [associations]
symbol:cspE species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0001072 "RNA
binding transcription antitermination factor activity"
evidence=IDA] [GO:0060567 "negative regulation of DNA-dependent
transcription, termination" evidence=IDA] [GO:0031564
"transcription antitermination" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006351
GO:GO:0003697 EMBL:U82598 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 EMBL:D28497 EMBL:S83396
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 OMA:WTKRTTI EMBL:L29054 PIR:S49050 RefSeq:NP_415156.1
RefSeq:YP_488914.1 ProteinModelPortal:P0A972 SMR:P0A972
DIP:DIP-47834N IntAct:P0A972 MINT:MINT-1221433 PaxDb:P0A972
PRIDE:P0A972 EnsemblBacteria:EBESCT00000004662
EnsemblBacteria:EBESCT00000018389 GeneID:12931648 GeneID:947024
KEGG:ecj:Y75_p0613 KEGG:eco:b0623 PATRIC:32116426 EchoBASE:EB2096
EcoGene:EG12179 ProtClustDB:PRK09507 BioCyc:EcoCyc:EG12179-MONOMER
BioCyc:ECOL316407:JW0618-MONOMER Genevestigator:P0A972
GO:GO:0008143 Uniprot:P0A972
Length = 69
Score = 157 (60.3 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 92 DKGHEAINV 100
KG A NV
Sbjct: 58 AKGPSAANV 66
Score = 146 (56.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K+ G VKWF+ G+GFI ++DVFVH I+ N +KTLAEG+ VEF+I G
Sbjct: 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 57
Query: 259 DKG 261
KG
Sbjct: 58 AKG 60
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 157 (60.3 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF + G+GFI +D+FVH I+ +++LA E+VEFD+ + G
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEG----FRSLAAEESVEFDVEVDNSGR 72
Query: 96 -EAINVTGPDGRHVQGS 111
+AI V+GPDG VQG+
Sbjct: 73 PKAIEVSGPDGAPVQGN 89
Score = 114 (45.2 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
G VKWF + G+GFI +D+FVH I+ +++LA E+VEFD+ + G
Sbjct: 17 GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEG----FRSLAAEESVEFDVEVDNSG 71
>UNIPROTKB|Q9KN00 [details] [associations]
symbol:cspA "Cold shock-like protein CspA" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 153 (58.9 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G VKWF+ G+GFI+ + +DVFVH K I +KTLAEG+ V F +
Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVE 56
Query: 90 QGDKGHEAINVT 101
QG KG +A VT
Sbjct: 57 QGKKGPQAAQVT 68
Score = 144 (55.7 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G VKWF+ G+GFI+ + +DVFVH K I +KTLAEG+ V F +
Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVE 56
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 57 QGKKGPQ 63
>TIGR_CMR|VC_A0166 [details] [associations]
symbol:VC_A0166 "cold shock transcriptional regulator
CspA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 153 (58.9 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G VKWF+ G+GFI+ + +DVFVH K I +KTLAEG+ V F +
Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVE 56
Query: 90 QGDKGHEAINVT 101
QG KG +A VT
Sbjct: 57 QGKKGPQAAQVT 68
Score = 144 (55.7 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G VKWF+ G+GFI+ + +DVFVH K I +KTLAEG+ V F +
Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEG----FKTLAEGQRVSFTVE 56
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 57 QGKKGPQ 63
>TIGR_CMR|GSU_0581 [details] [associations]
symbol:GSU_0581 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
HOGENOM:HOG000070674 KO:K03704 RefSeq:NP_951639.1
ProteinModelPortal:Q74FM5 SMR:Q74FM5 GeneID:2685798
KEGG:gsu:GSU0581 PATRIC:22023911 OMA:RAITSAF ProtClustDB:CLSK827926
BioCyc:GSUL243231:GH27-557-MONOMER Uniprot:Q74FM5
Length = 66
Score = 152 (58.6 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
GVVKWF+ GYGFI + EDVFVH I+ + +KTL EG+ V FD++QG KG
Sbjct: 4 GVVKWFNDSKGYGFIEQ-ENGEDVFVHFSSIQGDG----FKTLVEGQAVTFDVVQGAKGL 58
Query: 96 EAINV 100
+A NV
Sbjct: 59 QAANV 63
Score = 148 (57.2 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 33/67 (49%), Positives = 42/67 (62%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
GVVKWF+ GYGFI + EDVFVH I+ + +KTL EG+ V FD++QG KG
Sbjct: 4 GVVKWFNDSKGYGFIEQ-ENGEDVFVHFSSIQGDG----FKTLVEGQAVTFDVVQGAKGL 58
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 59 QAANVMK 65
>UNIPROTKB|P0A986 [details] [associations]
symbol:cspI species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0009409 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 OMA:IQSNNFK
PIR:C64910 RefSeq:NP_416070.1 RefSeq:YP_489816.1
ProteinModelPortal:P0A986 SMR:P0A986 DIP:DIP-48195N IntAct:P0A986
MINT:MINT-1309031 PRIDE:P0A986 EnsemblBacteria:EBESCT00000000769
EnsemblBacteria:EBESCT00000016713 GeneID:12931246 GeneID:946099
KEGG:ecj:Y75_p1528 KEGG:eco:b1552 PATRIC:32118406 EchoBASE:EB3636
EcoGene:EG13877 ProtClustDB:CLSK891754 BioCyc:EcoCyc:G6825-MONOMER
BioCyc:ECOL316407:JW1544-MONOMER Genevestigator:P0A986
Uniprot:P0A986
Length = 70
Score = 150 (57.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G+VKWF+ + G+GFI ++DVFVH I+ N+ +KTL E + VEF I
Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSND----FKTLTENQEVEFGIE 56
Query: 90 QGDKGHEAINV 100
G KG A++V
Sbjct: 57 NGPKGPAAVHV 67
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G+VKWF+ + G+GFI ++DVFVH I+ N+ +KTL E + VEF I
Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSND----FKTLTENQEVEFGIE 56
Query: 257 QGDKG 261
G KG
Sbjct: 57 NGPKG 61
>UNIPROTKB|Q9KL16 [details] [associations]
symbol:cspV "Cold shock protein CspV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 150 (57.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++TK+ G VKWF+ G+GF+ + DVFVH I+ +KTLAEG+ V F +
Sbjct: 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEG----FKTLAEGQRVSFIVE 56
Query: 90 QGDKGHEAINV 100
QG KG +A NV
Sbjct: 57 QGKKGPQASNV 67
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++TK+ G VKWF+ G+GF+ + DVFVH I+ +KTLAEG+ V F +
Sbjct: 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEG----FKTLAEGQRVSFIVE 56
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 57 QGKKGPQ 63
>TIGR_CMR|VC_A0933 [details] [associations]
symbol:VC_A0933 "cold shock domain family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 150 (57.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++TK+ G VKWF+ G+GF+ + DVFVH I+ +KTLAEG+ V F +
Sbjct: 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEG----FKTLAEGQRVSFIVE 56
Query: 90 QGDKGHEAINV 100
QG KG +A NV
Sbjct: 57 QGKKGPQASNV 67
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++TK+ G VKWF+ G+GF+ + DVFVH I+ +KTLAEG+ V F +
Sbjct: 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEG----FKTLAEGQRVSFIVE 56
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 57 QGKKGPQ 63
>UNIPROTKB|P36995 [details] [associations]
symbol:cspB species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA;IEP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009409 GO:GO:0006351 GO:GO:0003723
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
EMBL:L28429 EMBL:AF003590 PIR:S43617 RefSeq:NP_416075.1
RefSeq:YP_489821.1 ProteinModelPortal:P36995 SMR:P36995
DIP:DIP-9334N IntAct:P36995 MINT:MINT-1241665 PaxDb:P36995
EnsemblBacteria:EBESCT00000000475 EnsemblBacteria:EBESCT00000016617
GeneID:12930135 GeneID:946091 KEGG:ecj:Y75_p1533 KEGG:eco:b1557
PATRIC:32118416 EchoBASE:EB2119 EcoGene:EG12203 OMA:ANVFRRN
ProtClustDB:CLSK891756 BioCyc:EcoCyc:EG12203-MONOMER
BioCyc:ECOL316407:JW1549-MONOMER Genevestigator:P36995
Uniprot:P36995
Length = 71
Score = 150 (57.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G+VKWF+ G+GFI+ ++DVFVH I+ +N Y+TL EG+ V F I
Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDN----YRTLFEGQKVTFSIE 56
Query: 90 QGDKGHEAINV 100
G KG A NV
Sbjct: 57 SGAKGPAAANV 67
Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G+VKWF+ G+GFI+ ++DVFVH I+ +N Y+TL EG+ V F I
Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDN----YRTLFEGQKVTFSIE 56
Query: 257 QGDKG 261
G KG
Sbjct: 57 SGAKG 61
>TIGR_CMR|SO_1648 [details] [associations]
symbol:SO_1648 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000070674 HSSP:P41016
RefSeq:NP_717259.2 ProteinModelPortal:Q8EGF6 GeneID:1169442
PATRIC:23522932 OMA:FEVENGQ ProtClustDB:CLSK912356 Uniprot:Q8EGF6
Length = 69
Score = 150 (57.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
+K GVVKWF+ G+GFI+ + D FVH + I + +KTLAEG+ V +++ QG
Sbjct: 2 SKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSDG----FKTLAEGQKVSYEVEQG 57
Query: 92 DKGHEAINV 100
KG +A NV
Sbjct: 58 QKGPQAANV 66
Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
+K GVVKWF+ G+GFI+ + D FVH + I + +KTLAEG+ V +++ QG
Sbjct: 2 SKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSDG----FKTLAEGQKVSYEVEQG 57
Query: 259 DKGNQ 263
KG Q
Sbjct: 58 QKGPQ 62
>UNIPROTKB|P0A978 [details] [associations]
symbol:cspG species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:AWEDEEV EMBL:D63344 EMBL:AF003591 PIR:D64840 RefSeq:NP_415510.1
RefSeq:YP_489262.1 ProteinModelPortal:P0A978 SMR:P0A978
DIP:DIP-47938N IntAct:P0A978 MINT:MINT-1247768 PRIDE:P0A978
EnsemblBacteria:EBESCT00000003528 EnsemblBacteria:EBESCT00000016965
GeneID:12931923 GeneID:945591 KEGG:ecj:Y75_p0962 KEGG:eco:b0990
PATRIC:32117205 EchoBASE:EB3993 EcoGene:EG14243
ProtClustDB:PRK09890 BioCyc:EcoCyc:G6511-MONOMER
BioCyc:ECOL316407:JW0974-MONOMER Genevestigator:P0A978
Uniprot:P0A978
Length = 70
Score = 148 (57.2 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G+VKWF+ G+GFI ++DVFVH I+ N ++TL E + VEF I
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNE----FRTLNENQKVEFSIE 56
Query: 90 QGDKGHEAINV 100
QG +G A NV
Sbjct: 57 QGQRGPAAANV 67
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G+VKWF+ G+GFI ++DVFVH I+ N ++TL E + VEF I
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNE----FRTLNENQKVEFSIE 56
Query: 257 QGDKG 261
QG +G
Sbjct: 57 QGQRG 61
>TIGR_CMR|SO_2787 [details] [associations]
symbol:SO_2787 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 HSSP:P41016
RefSeq:NP_718365.1 ProteinModelPortal:Q8EDG5 SMR:Q8EDG5
GeneID:1170487 KEGG:son:SO_2787 PATRIC:23525209 OMA:FRAIQGN
ProtClustDB:CLSK906860 Uniprot:Q8EDG5
Length = 69
Score = 147 (56.8 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 33/70 (47%), Positives = 43/70 (61%)
Query: 32 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 91
++V GVVKWF+ G+GFI S DVFVH + I + +KTL EG+ V F + QG
Sbjct: 2 SQVTGVVKWFNSDKGFGFIEQ-ESGPDVFVHFRAINSDG----FKTLDEGQKVSFTVTQG 56
Query: 92 DKGHEAINVT 101
KG +A NVT
Sbjct: 57 QKGPQAENVT 66
Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 199 TKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQG 258
++V GVVKWF+ G+GFI S DVFVH + I + +KTL EG+ V F + QG
Sbjct: 2 SQVTGVVKWFNSDKGFGFIEQ-ESGPDVFVHFRAINSDG----FKTLDEGQKVSFTVTQG 56
Query: 259 DKGNQ 263
KG Q
Sbjct: 57 QKGPQ 61
>UNIPROTKB|Q8AVK2 [details] [associations]
symbol:lin28b "Protein lin-28 homolog B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0010587 "miRNA catabolic process" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:BC042225
UniGene:Xl.23571 ProteinModelPortal:Q8AVK2 SMR:Q8AVK2
Xenbase:XB-GENE-1218973 Uniprot:Q8AVK2
Length = 252
Score = 159 (61.0 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 41/113 (36%), Positives = 60/113 (53%)
Query: 7 GTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIA------TPSSNE-DV 59
GT+ E P E +++P VL G KWF+V+ G+GFI+ +P N DV
Sbjct: 9 GTREEQGKL-PEQEEEEEEDPQVLLGS--GHCKWFNVRMGFGFISMTSREGSPLENPVDV 65
Query: 60 FVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
FVH ++ + +++L EGE VEF + KG E++ VTGP G GS+
Sbjct: 66 FVHQSKLYMDG----FRSLKEGEPVEFTFKKSSKGFESLRVTGPGGNPCLGSE 114
Score = 118 (46.6 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 174 GTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIA------TPSSNE-DV 226
GT+ E P E +++P VL G KWF+V+ G+GFI+ +P N DV
Sbjct: 9 GTREEQGKL-PEQEEEEEEDPQVLLGS--GHCKWFNVRMGFGFISMTSREGSPLENPVDV 65
Query: 227 FVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
FVH ++ + +++L EGE VEF + KG
Sbjct: 66 FVHQSKLYMDG----FRSLKEGEPVEFTFKKSSKG 96
>UNIPROTKB|P0A9X9 [details] [associations]
symbol:cspA species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IEP] [GO:0006950 "response
to stress" evidence=IEP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEP;IDA;TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00039 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0009409
GO:GO:0003727 GO:GO:0006351 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 EMBL:M30139
EMBL:U60035 PIR:JH0201 RefSeq:NP_418012.1 RefSeq:YP_491880.1
PDB:1MJC PDB:2BH8 PDB:3MEF PDBsum:1MJC PDBsum:2BH8 PDBsum:3MEF
ProteinModelPortal:P0A9X9 SMR:P0A9X9 DIP:DIP-31862N IntAct:P0A9X9
MINT:MINT-1220153 PaxDb:P0A9X9 PRIDE:P0A9X9
EnsemblBacteria:EBESCT00000002447 EnsemblBacteria:EBESCT00000002448
EnsemblBacteria:EBESCT00000016761 GeneID:12933539 GeneID:948070
KEGG:ecj:Y75_p3621 KEGG:eco:b3556 PATRIC:32122584 EchoBASE:EB0164
EcoGene:EG10166 OMA:AHFRQIT ProtClustDB:PRK10354
BioCyc:EcoCyc:PD03695 BioCyc:ECOL316407:JW3525-MONOMER
EvolutionaryTrace:P0A9X9 Genevestigator:P0A9X9 GO:GO:0001072
GO:GO:0060567 Uniprot:P0A9X9
Length = 70
Score = 145 (56.1 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G+VKWF+ G+GFI ++DVFVH I+ + YK+L EG+ V F I
Sbjct: 1 MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDG----YKSLDEGQKVSFTIE 56
Query: 90 QGDKGHEAINVT 101
G KG A NVT
Sbjct: 57 SGAKGPAAGNVT 68
Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ K+ G+VKWF+ G+GFI ++DVFVH I+ + YK+L EG+ V F I
Sbjct: 1 MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDG----YKSLDEGQKVSFTIE 56
Query: 257 QGDKG 261
G KG
Sbjct: 57 SGAKG 61
>TIGR_CMR|CHY_0155 [details] [associations]
symbol:CHY_0155 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
ProtClustDB:CLSK742705 RefSeq:YP_359027.1 ProteinModelPortal:Q3AFQ7
SMR:Q3AFQ7 STRING:Q3AFQ7 GeneID:3726793 KEGG:chy:CHY_0155
PATRIC:21273497 OMA:IETEGSE BioCyc:CHYD246194:GJCN-155-MONOMER
Uniprot:Q3AFQ7
Length = 65
Score = 143 (55.4 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 32/65 (49%), Positives = 40/65 (61%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF K GYGFI DVFVH I+ K +KTL EG+ VEF+I++G +G
Sbjct: 3 GKVKWFDPKKGYGFIEREDGG-DVFVHFSAIQ----EKGFKTLEEGQRVEFEIVEGARGP 57
Query: 96 EAINV 100
+A NV
Sbjct: 58 QAANV 62
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF K GYGFI DVFVH I+ K +KTL EG+ VEF+I++G +G
Sbjct: 3 GKVKWFDPKKGYGFIEREDGG-DVFVHFSAIQ----EKGFKTLEEGQRVEFEIVEGARGP 57
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 58 QAANVVK 64
>TAIR|locus:2121219 [details] [associations]
symbol:GRP2 "AT4G38680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=IEP] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0048316 "seed development" evidence=IMP] [GO:0048443 "stamen
development" evidence=IMP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0043457 "regulation of cellular respiration"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005829
GO:GO:0005886 GO:GO:0009737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 GO:GO:0009631 GO:GO:0048443 GO:GO:0048316
GO:GO:0003690 GO:GO:0003697 GO:GO:0010228 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10 GO:GO:0009269
EMBL:AL161593 HOGENOM:HOG000186262 InterPro:IPR019844 GO:GO:0043457
eggNOG:COG1278 GO:GO:0032508 EMBL:S47408 EMBL:AL035540
EMBL:AF360202 EMBL:AF385696 EMBL:AY040049 EMBL:AY133591
EMBL:AK318762 IPI:IPI00537614 IPI:IPI00930938 PIR:JQ1061
RefSeq:NP_195580.1 UniGene:At.24348 UniGene:At.75605 HSSP:O54310
ProteinModelPortal:Q41188 SMR:Q41188 STRING:Q41188 PRIDE:Q41188
ProMEX:Q41188 EnsemblPlants:AT4G38680.1 GeneID:830024
KEGG:ath:AT4G38680 TAIR:At4g38680 InParanoid:Q41188 OMA:DCYKCGE
PhylomeDB:Q41188 ProtClustDB:CLSN2683565 Genevestigator:Q41188
Uniprot:Q41188
Length = 203
Score = 147 (56.8 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI-MQGDKG 94
G VKWF + G+GFI +D+FVH I+ +++LA E VEF++ + +
Sbjct: 13 GSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEG----FRSLAAEEAVEFEVEIDNNNR 68
Query: 95 HEAINVTGPDGRHVQGS 111
+AI+V+GPDG VQG+
Sbjct: 69 PKAIDVSGPDGAPVQGN 85
Score = 107 (42.7 bits), Expect = 0.00064, P = 0.00064
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF + G+GFI +D+FVH I+ +++LA E VEF++ + D N
Sbjct: 13 GSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEG----FRSLAAEEAVEFEV-EIDNNN 67
Query: 263 Q 263
+
Sbjct: 68 R 68
>TIGR_CMR|GSU_0207 [details] [associations]
symbol:GSU_0207 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951268.1 ProteinModelPortal:Q74GN9 SMR:Q74GN9
GeneID:2687733 KEGG:gsu:GSU0207 PATRIC:22023162 OMA:MSTITGN
BioCyc:GSUL243231:GH27-162-MONOMER Uniprot:Q74GN9
Length = 66
Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 93
V G VKWF+ G+GF+ + EDVFVH I N +K+LAEG+ V F++ +G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFVHFSAINGNG----FKSLAEGDRVTFEVTKGPK 56
Query: 94 GHEAINVT 101
G +A NVT
Sbjct: 57 GLQAANVT 64
Score = 127 (49.8 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 260
V G VKWF+ G+GF+ + EDVFVH I N +K+LAEG+ V F++ +G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFVHFSAINGNG----FKSLAEGDRVTFEVTKGPK 56
Query: 261 GNQ 263
G Q
Sbjct: 57 GLQ 59
>TIGR_CMR|CPS_0718 [details] [associations]
symbol:CPS_0718 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267468.1
ProteinModelPortal:Q488P6 SMR:Q488P6 GeneID:3518546
KEGG:cps:CPS_0718 PATRIC:21464753 OMA:QKGPCAN
ProtClustDB:CLSK768090 BioCyc:CPSY167879:GI48-805-MONOMER
Uniprot:Q488P6
Length = 68
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 94
G+VKWF+ G+GFI ++D+FVH I+ Y TLA+G+TVE+++ QG KG
Sbjct: 4 GIVKWFNSDKGFGFITPEDGSKDLFVHHSEIQSGGE---YATLADGQTVEYEVGQGQKG 59
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
G+VKWF+ G+GFI ++D+FVH I+ Y TLA+G+TVE+++ QG KG
Sbjct: 4 GIVKWFNSDKGFGFITPEDGSKDLFVHHSEIQSGGE---YATLADGQTVEYEVGQGQKG 59
>TIGR_CMR|BA_5424 [details] [associations]
symbol:BA_5424 "cold shock protein CspC" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_847592.1 RefSeq:YP_022086.2 RefSeq:YP_031279.1
ProteinModelPortal:P62169 SMR:P62169 DNASU:1085020
EnsemblBacteria:EBBACT00000012131 EnsemblBacteria:EBBACT00000018032
EnsemblBacteria:EBBACT00000022166 GeneID:1085020 GeneID:2818619
GeneID:2851935 KEGG:ban:BA_5424 KEGG:bar:GBAA_5424 KEGG:bat:BAS5040
OMA:WTKRTTI ProtClustDB:CLSK873658
BioCyc:BANT260799:GJAJ-5115-MONOMER
BioCyc:BANT261594:GJ7F-5291-MONOMER Uniprot:P62169
Length = 65
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI +DVFVH I+ + YK+L EG+ VEFDI+ G +G
Sbjct: 3 GRVKWFNAEKGFGFIER-EDGDDVFVHFSAIQQDG----YKSLEEGQQVEFDIVDGARGP 57
Query: 96 EAINV 100
+A NV
Sbjct: 58 QAANV 62
Score = 136 (52.9 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI +DVFVH I+ + YK+L EG+ VEFDI+ G +G
Sbjct: 3 GRVKWFNAEKGFGFIER-EDGDDVFVHFSAIQQDG----YKSLEEGQQVEFDIVDGARGP 57
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 58 QAANVVK 64
>TIGR_CMR|GSU_1905 [details] [associations]
symbol:GSU_1905 "cold shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_952954.1 ProteinModelPortal:Q74BX3 SMR:Q74BX3
GeneID:2688446 KEGG:gsu:GSU1905 PATRIC:22026675 OMA:FISRDNG
ProtClustDB:CLSK828634 BioCyc:GSUL243231:GH27-1948-MONOMER
Uniprot:Q74BX3
Length = 66
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI + EDVFVH I+ + +K+LAEGE V FD++ G KG
Sbjct: 4 GRVKWFNDAKGFGFIEQ-DNGEDVFVHFSAIQQDG----FKSLAEGEQVSFDVVNGPKGL 58
Query: 96 EAINV 100
+A NV
Sbjct: 59 QAANV 63
Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ G+GFI + EDVFVH I+ + +K+LAEGE V FD++ G KG
Sbjct: 4 GRVKWFNDAKGFGFIEQ-DNGEDVFVHFSAIQQDG----FKSLAEGEQVSFDVVNGPKGL 58
Query: 263 QFCFVLK 269
Q V K
Sbjct: 59 QAANVKK 65
>TIGR_CMR|CPS_2895 [details] [associations]
symbol:CPS_2895 "cold shock-like protein CspD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006950 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:QVVRFDV TIGRFAMs:TIGR02381 RefSeq:YP_269596.1
ProteinModelPortal:Q480C3 SMR:Q480C3 STRING:Q480C3 GeneID:3518797
KEGG:cps:CPS_2895 PATRIC:21468815
BioCyc:CPSY167879:GI48-2945-MONOMER Uniprot:Q480C3
Length = 72
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI S ED+F H I+ + Y+TL G+ V++++ G KGH
Sbjct: 4 GTVKWFNNAKGFGFIRPDSGGEDIFAHYSTIEMDG----YRTLKAGQDVDYELNDGPKGH 59
Query: 96 EAINVTGPDG 105
A ++ DG
Sbjct: 60 HAASIKLADG 69
Score = 121 (47.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ G+GFI S ED+F H I+ + Y+TL G+ V++++ G KG+
Sbjct: 4 GTVKWFNNAKGFGFIRPDSGGEDIFAHYSTIEMDG----YRTLKAGQDVDYELNDGPKGH 59
>TIGR_CMR|BA_1135 [details] [associations]
symbol:BA_1135 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 RefSeq:NP_843619.1
RefSeq:YP_017753.1 RefSeq:YP_027326.1 ProteinModelPortal:Q81TW8
SMR:Q81TW8 DNASU:1086206 EnsemblBacteria:EBBACT00000011078
EnsemblBacteria:EBBACT00000018522 EnsemblBacteria:EBBACT00000023981
GeneID:1086206 GeneID:2816671 GeneID:2852366 KEGG:ban:BA_1135
KEGG:bar:GBAA_1135 KEGG:bat:BAS1054 HOGENOM:HOG000070674 KO:K03704
OMA:LNIKGHY ProtClustDB:CLSK916107
BioCyc:BANT260799:GJAJ-1130-MONOMER
BioCyc:BANT261594:GJ7F-1181-MONOMER Uniprot:Q81TW8
Length = 67
Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 93
V G VKWF+ + G+GFI P N DVFVH I+ + +K+L EG+ V F+I +G++
Sbjct: 3 VTGQVKWFNNEKGFGFIEVPGEN-DVFVHFSAIETDG----FKSLEEGQKVSFEIEEGNR 57
Query: 94 GHEAINV 100
G +A NV
Sbjct: 58 GPQAKNV 64
Score = 135 (52.6 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 260
V G VKWF+ + G+GFI P N DVFVH I+ + +K+L EG+ V F+I +G++
Sbjct: 3 VTGQVKWFNNEKGFGFIEVPGEN-DVFVHFSAIETDG----FKSLEEGQKVSFEIEEGNR 57
Query: 261 GNQFCFVLK 269
G Q V+K
Sbjct: 58 GPQAKNVIK 66
>TIGR_CMR|BA_5115 [details] [associations]
symbol:BA_5115 "cold shock protein CspD" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 RefSeq:NP_847301.1
RefSeq:YP_021768.1 RefSeq:YP_030998.1 ProteinModelPortal:Q81K90
SMR:Q81K90 DNASU:1084426 EnsemblBacteria:EBBACT00000008459
EnsemblBacteria:EBBACT00000015452 EnsemblBacteria:EBBACT00000020851
GeneID:1084426 GeneID:2816754 GeneID:2848947 KEGG:ban:BA_5115
KEGG:bar:GBAA_5115 KEGG:bat:BAS4754 HOGENOM:HOG000070673
OMA:IQSNNFK ProtClustDB:CLSK917532
BioCyc:BANT260799:GJAJ-4808-MONOMER
BioCyc:BANT261594:GJ7F-4967-MONOMER Uniprot:Q81K90
Length = 66
Score = 140 (54.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI +DVFVH I+ + +KTL EG+ V F+I++G++G
Sbjct: 4 GKVKWFNSEKGFGFIEV-EGGDDVFVHFSAIQGDG----FKTLEEGQEVSFEIVEGNRGP 58
Query: 96 EAINVT 101
+A NVT
Sbjct: 59 QAANVT 64
Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI +DVFVH I+ + +KTL EG+ V F+I++G++G
Sbjct: 4 GKVKWFNSEKGFGFIEV-EGGDDVFVHFSAIQGDG----FKTLEEGQEVSFEIVEGNRGP 58
Query: 263 QFCFVLKN 270
Q V KN
Sbjct: 59 QAANVTKN 66
>TIGR_CMR|CHY_0157 [details] [associations]
symbol:CHY_0157 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 OMA:WTKRTTI RefSeq:YP_359029.1
ProteinModelPortal:Q3AFQ5 SMR:Q3AFQ5 STRING:Q3AFQ5 GeneID:3727298
KEGG:chy:CHY_0157 PATRIC:21273501 ProtClustDB:CLSK742705
BioCyc:CHYD246194:GJCN-157-MONOMER Uniprot:Q3AFQ5
Length = 65
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 31/65 (47%), Positives = 39/65 (60%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF GYGFI DVFVH IK N +KTL EG+ VEF+I++G +G
Sbjct: 3 GKVKWFDPAKGYGFIEREDGG-DVFVHFSAIKGNG----FKTLEEGQRVEFNIVEGTRGP 57
Query: 96 EAINV 100
+A +V
Sbjct: 58 QAADV 62
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 32/67 (47%), Positives = 39/67 (58%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF GYGFI DVFVH IK N +KTL EG+ VEF+I++G +G
Sbjct: 3 GKVKWFDPAKGYGFIEREDGG-DVFVHFSAIKGNG----FKTLEEGQRVEFNIVEGTRGP 57
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 58 QAADVVK 64
>UNIPROTKB|P0A968 [details] [associations]
symbol:cspD species:83333 "Escherichia coli K-12"
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0042594
"response to starvation" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008156 "negative
regulation of DNA replication" evidence=IEA;IDA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
InterPro:IPR012751 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042594 GO:GO:0003723 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008156
InterPro:IPR019844 EMBL:M31045 eggNOG:COG1278 HOGENOM:HOG000070674
KO:K03704 PIR:H64826 RefSeq:NP_415401.1 RefSeq:YP_489153.1
ProteinModelPortal:P0A968 SMR:P0A968 DIP:DIP-47833N IntAct:P0A968
MINT:MINT-1219798 PaxDb:P0A968 PRIDE:P0A968
EnsemblBacteria:EBESCT00000001356 EnsemblBacteria:EBESCT00000017372
GeneID:12934143 GeneID:945669 KEGG:ecj:Y75_p0853 KEGG:eco:b0880
PATRIC:32116969 EchoBASE:EB1102 EcoGene:EG11111 OMA:QVVRFDV
ProtClustDB:PRK09937 BioCyc:EcoCyc:EG11111-MONOMER
BioCyc:ECOL316407:JW0864-MONOMER Genevestigator:P0A968
TIGRFAMs:TIGR02381 Uniprot:P0A968
Length = 74
Score = 138 (53.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ G+GFI ED+F H I+ + Y+TL G++V+FD+ QG KGN
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDG----YRTLKAGQSVQFDVHQGPKGN 59
Score = 137 (53.3 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI ED+F H I+ + Y+TL G++V+FD+ QG KG+
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDG----YRTLKAGQSVQFDVHQGPKGN 59
Query: 96 EA 97
A
Sbjct: 60 HA 61
>UNIPROTKB|Q9KMY2 [details] [associations]
symbol:VC_A0184 "Cold shock DNA-binding domain protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HSSP:P41016 PIR:A82489
RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2 SMR:Q9KMY2
DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184 PATRIC:20084941
OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 135 (52.6 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++T V G VKWF+ G+GFI + DVF H I+ + ++TLAEG+ VEF I
Sbjct: 1 MSTPVTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVIT 55
Query: 90 QGDKGHEAINV 100
QG KG +A ++
Sbjct: 56 QGQKGPQAESI 66
Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++T V G VKWF+ G+GFI + DVF H I+ + ++TLAEG+ VEF I
Sbjct: 1 MSTPVTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVIT 55
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 56 QGQKGPQ 62
>TIGR_CMR|VC_A0184 [details] [associations]
symbol:VC_A0184 "cold shock DNA-binding domain protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HSSP:P41016 PIR:A82489 RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2
SMR:Q9KMY2 DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184
PATRIC:20084941 OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 135 (52.6 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++T V G VKWF+ G+GFI + DVF H I+ + ++TLAEG+ VEF I
Sbjct: 1 MSTPVTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVIT 55
Query: 90 QGDKGHEAINV 100
QG KG +A ++
Sbjct: 56 QGQKGPQAESI 66
Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++T V G VKWF+ G+GFI + DVF H I+ + ++TLAEG+ VEF I
Sbjct: 1 MSTPVTGTVKWFNETKGFGFIKQ-ENGPDVFAHFSAIQGDG----FRTLAEGQKVEFVIT 55
Query: 257 QGDKGNQ 263
QG KG Q
Sbjct: 56 QGQKGPQ 62
>TIGR_CMR|BA_3594 [details] [associations]
symbol:BA_3594 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:AHFRQIT HOGENOM:HOG000070673
HSSP:P41016 RefSeq:NP_845864.1 RefSeq:YP_020229.1
RefSeq:YP_029590.1 ProteinModelPortal:Q81YF5 SMR:Q81YF5
DNASU:1086356 EnsemblBacteria:EBBACT00000010475
EnsemblBacteria:EBBACT00000015696 EnsemblBacteria:EBBACT00000021214
GeneID:1086356 GeneID:2816334 GeneID:2852892 KEGG:ban:BA_3594
KEGG:bar:GBAA_3594 KEGG:bat:BAS3333 ProtClustDB:CLSK917095
BioCyc:BANT260799:GJAJ-3395-MONOMER
BioCyc:BANT261594:GJ7F-3504-MONOMER Uniprot:Q81YF5
Length = 66
Score = 135 (52.6 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI EDVFVH I+ +KTL EG+ V F++ QG++G
Sbjct: 4 GKVKWFNSEKGFGFIEV-EGGEDVFVHFSAIQGEG----FKTLEEGQEVTFEVEQGNRGP 58
Query: 96 EAINV 100
+A NV
Sbjct: 59 QATNV 63
Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI EDVFVH I+ +KTL EG+ V F++ QG++G
Sbjct: 4 GKVKWFNSEKGFGFIEV-EGGEDVFVHFSAIQGEG----FKTLEEGQEVTFEVEQGNRGP 58
Query: 263 Q 263
Q
Sbjct: 59 Q 59
>TIGR_CMR|BA_1629 [details] [associations]
symbol:BA_1629 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 OMA:ANVFRRN
HSSP:P41016 RefSeq:NP_844076.1 RefSeq:YP_018263.1
RefSeq:YP_027779.1 ProteinModelPortal:Q81SL9 SMR:Q81SL9
DNASU:1086132 EnsemblBacteria:EBBACT00000009010
EnsemblBacteria:EBBACT00000014540 EnsemblBacteria:EBBACT00000022883
GeneID:1086132 GeneID:2816052 GeneID:2848926 KEGG:ban:BA_1629
KEGG:bar:GBAA_1629 KEGG:bat:BAS1512 ProtClustDB:CLSK916304
BioCyc:BANT260799:GJAJ-1584-MONOMER
BioCyc:BANT261594:GJ7F-1650-MONOMER Uniprot:Q81SL9
Length = 65
Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI + +DVFVH I+ YK L EG+ V FDI +G++G
Sbjct: 3 GKVKWFNNEKGFGFIEMEGA-DDVFVHFSAIQGEG----YKALEEGQEVSFDITEGNRGP 57
Query: 96 EAINV 100
+A NV
Sbjct: 58 QAANV 62
Score = 128 (50.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI + +DVFVH I+ YK L EG+ V FDI +G++G
Sbjct: 3 GKVKWFNNEKGFGFIEMEGA-DDVFVHFSAIQGEG----YKALEEGQEVSFDITEGNRGP 57
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 58 QAANVVK 64
>UNIPROTKB|E1BHM3 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:79727 OMA:GVGVCKW EMBL:DAAA02006373 IPI:IPI00718151
RefSeq:NP_001179986.1 UniGene:Bt.106487 ProteinModelPortal:E1BHM3
PRIDE:E1BHM3 Ensembl:ENSBTAT00000004196 GeneID:614997
KEGG:bta:614997 NextBio:20899397 Uniprot:E1BHM3
Length = 205
Score = 142 (55.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------D 58
+G A+A P +EP +L G+ KWF+V+ G+GF++ T + D
Sbjct: 10 AGGCAKAPEEAPEDAARAAEEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVD 67
Query: 59 VFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
VFVH ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 68 VFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE 117
Score = 107 (42.7 bits), Expect = 0.00066, P = 0.00066
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------D 225
+G A+A P + +EP +L G+ KWF+V+ G+GF++ T + D
Sbjct: 10 AGGCAKAPEEAPEDAARAAEEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVD 67
Query: 226 VFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
VFVH ++ +++L EGE VEF + KG
Sbjct: 68 VFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKG 99
>UNIPROTKB|B1PXG0 [details] [associations]
symbol:LIN28 "LIN28" species:9823 "Sus scrofa" [GO:0060964
"regulation of gene silencing by miRNA" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0031123
"RNA 3'-end processing" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:FP236394 EMBL:EU503118 RefSeq:NP_001116605.1
UniGene:Ssc.70783 SMR:B1PXG0 STRING:B1PXG0
Ensembl:ENSSSCT00000003951 GeneID:100142662 KEGG:ssc:100142662
Uniprot:B1PXG0
Length = 205
Score = 142 (55.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------D 58
+G A+A P +EP +L G+ KWF+V+ G+GF++ T + D
Sbjct: 10 AGGCAKAPEEAPEDAARAAEEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVD 67
Query: 59 VFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
VFVH ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 68 VFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE 117
Score = 107 (42.7 bits), Expect = 0.00066, P = 0.00066
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------D 225
+G A+A P + +EP +L G+ KWF+V+ G+GF++ T + D
Sbjct: 10 AGGCAKAPEEAPEDAARAAEEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVD 67
Query: 226 VFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
VFVH ++ +++L EGE VEF + KG
Sbjct: 68 VFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKG 99
>ZFIN|ZDB-GENE-040426-747 [details] [associations]
symbol:lin28a "lin-28 homolog A (C. elegans)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0010629
"negative regulation of gene expression" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0019827 "stem
cell maintenance" evidence=ISS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0010587 "miRNA catabolic process"
evidence=ISS] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357
ZFIN:ZDB-GENE-040426-747 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0000932
GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0019827
GO:GO:0010494 eggNOG:COG1278 GeneTree:ENSGT00390000001177 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:BX322664 EMBL:BC044433
IPI:IPI00495578 RefSeq:NP_957385.1 UniGene:Dr.24217
ProteinModelPortal:Q803L0 SMR:Q803L0 STRING:Q803L0 PRIDE:Q803L0
Ensembl:ENSDART00000098970 Ensembl:ENSDART00000142509 GeneID:394066
KEGG:dre:394066 InParanoid:Q803L0 NextBio:20815023
ArrayExpress:Q803L0 Bgee:Q803L0 Uniprot:Q803L0
Length = 202
Score = 141 (54.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 36 GVVKWFSVKSGYGFIATP-------SSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDI 88
GV KWF+V+ G+GF++ S DVFVH ++ +++L EGE VEF
Sbjct: 36 GVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEG----FRSLKEGEAVEFTF 91
Query: 89 MQGDKGHEAINVTGPDGRHVQGSQ 112
+ KG E++ VTGP G GS+
Sbjct: 92 KRSSKGLESLQVTGPGGAPCVGSE 115
>UNIPROTKB|E2RD12 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060964 "regulation of gene silencing by
miRNA" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0035198
"miRNA binding" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0031123 "RNA 3'-end processing"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0010587
"miRNA catabolic process" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686
EMBL:AAEX03001720 RefSeq:XP_854985.1 ProteinModelPortal:E2RD12
Ensembl:ENSCAFT00000019830 GeneID:612162 KEGG:cfa:612162
NextBio:20897695 Uniprot:E2RD12
Length = 206
Score = 142 (55.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------D 58
+G A+A P +EP +L G+ KWF+V+ G+GF++ T + D
Sbjct: 10 AGGCAKAPEEAPEDAARAAEEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVD 67
Query: 59 VFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
VFVH ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 68 VFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE 117
Score = 107 (42.7 bits), Expect = 0.00067, P = 0.00067
Identities = 30/96 (31%), Positives = 48/96 (50%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------D 225
+G A+A P + +EP +L G+ KWF+V+ G+GF++ T + D
Sbjct: 10 AGGCAKAPEEAPEDAARAAEEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVD 67
Query: 226 VFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
VFVH ++ +++L EGE VEF + KG
Sbjct: 68 VFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKG 99
>UNIPROTKB|Q48JS5 [details] [associations]
symbol:capA "Cold shock protein CapA" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:YP_274352.1 ProteinModelPortal:Q48JS5 SMR:Q48JS5
STRING:Q48JS5 GeneID:3557063 KEGG:psp:PSPPH_2133 PATRIC:19973494
OMA:GFIVPAN ProtClustDB:CLSK410037 Uniprot:Q48JS5
Length = 70
Score = 132 (51.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ + G VKWF+ + G+GFI +D+FVH K I+ + +K+L EG+TV F
Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDG----FKSLKEGQTVSFVAA 56
Query: 90 QGDKGHEAINV 100
+G KG +A V
Sbjct: 57 KGQKGMQAEQV 67
Score = 130 (50.8 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ + G VKWF+ + G+GFI +D+FVH K I+ + +K+L EG+TV F
Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDG----FKSLKEGQTVSFVAA 56
Query: 257 QGDKGNQ 263
+G KG Q
Sbjct: 57 KGQKGMQ 63
>UNIPROTKB|Q45KJ4 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG1278 GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
EMBL:DQ127227 IPI:IPI00655492 RefSeq:NP_001029990.1
UniGene:Gga.14055 ProteinModelPortal:Q45KJ4 SMR:Q45KJ4
Ensembl:ENSGALT00000024860 GeneID:421786 KEGG:gga:421786 CTD:389421
InParanoid:Q45KJ4 OMA:GGHGCTS NextBio:20824507 Uniprot:Q45KJ4
Length = 250
Score = 146 (56.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 40/118 (33%), Positives = 59/118 (50%)
Query: 3 MCDSG-TKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS------- 54
M ++G +K P +E ++ P+ C KWF+V+ G+GFI+ S
Sbjct: 1 MAEAGASKGGEEPGRLPEHEEEEESPLWHGAGHC---KWFNVRMGFGFISMSSREGSPLE 57
Query: 55 SNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
S DVFVH ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 58 SPVDVFVHQSKLYMEG----FRSLKEGEPVEFTYKKSSKGLESIRVTGPGGSPCLGSE 111
>TIGR_CMR|SPO_2140 [details] [associations]
symbol:SPO_2140 "cold shock DNA-binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0005737 GO:GO:0006355
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K03704
RefSeq:YP_167367.1 ProteinModelPortal:Q5LRI8 GeneID:3193503
KEGG:sil:SPO2140 PATRIC:23377625 HOGENOM:HOG000139725 OMA:FIVPDNG
ProtClustDB:CLSK933775 Uniprot:Q5LRI8
Length = 175
Score = 96 (38.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 26 EPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVE 85
E + A KV G VKWF GYGF+ D+ +H ++ N + ++A+G +E
Sbjct: 3 EELSSAYKVRGRVKWFDPTKGYGFVVAEEGGPDILLHVNVLR-NFGQS---SVADGAAIE 58
Query: 86 FDIMQGDKGHEAINV 100
+ D+G +A+ V
Sbjct: 59 IMTHRTDRGVQAVEV 73
Score = 85 (35.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 205 VKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQF 264
VKWF G+GF S+EDVF+H + ++ + L GE + ++ G +G
Sbjct: 108 VKWFDKGKGFGFANVFGSSEDVFLHIEVLRQSG----LSDLQPGEALAMRVIDGKRGRMA 163
Query: 265 CFVL 268
VL
Sbjct: 164 AEVL 167
>RGD|1566408 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10116
"Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA;ISO] [GO:0010586 "miRNA
metabolic process" evidence=ISO] [GO:0010587 "miRNA catabolic
process" evidence=IEA;ISO] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO] [GO:0031054 "pre-miRNA processing"
evidence=IEA;ISO] [GO:0031123 "RNA 3'-end processing"
evidence=IEA;ISO] [GO:0031369 "translation initiation factor
binding" evidence=IEA;ISO] [GO:0035198 "miRNA binding"
evidence=IEA;ISO] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045686 "negative regulation
of glial cell differentiation" evidence=IEA;ISO] [GO:0045727
"positive regulation of translation" evidence=IEA;ISO] [GO:0048863
"stem cell differentiation" evidence=ISO] [GO:0060964 "regulation
of gene silencing by miRNA" evidence=IEA;ISO] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1566408 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0007281 GO:GO:0045666
GO:GO:0035198 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827 GO:GO:0010494
EMBL:CH473968 CTD:79727 OrthoDB:EOG4640D4 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686 IPI:IPI00560264
RefSeq:NP_001102739.1 UniGene:Rn.147538 Ensembl:ENSRNOT00000020641
GeneID:500562 KEGG:rno:500562 UCSC:RGD:1566408 NextBio:706580
Uniprot:D3ZZA6
Length = 209
Score = 141 (54.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 39/111 (35%), Positives = 57/111 (51%)
Query: 10 AEATPSNPSANES-PKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------DVFV 61
AE P A+ + EP +L G+ KWF+V+ G+GF++ T + DVFV
Sbjct: 17 AEKAPEEAPADAARAADEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 74
Query: 62 HSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
H ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 75 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE 121
>UNIPROTKB|F1M2W5 [details] [associations]
symbol:F1M2W5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 IPI:IPI00950285
Ensembl:ENSRNOT00000067498 ArrayExpress:F1M2W5 Uniprot:F1M2W5
Length = 328
Score = 148 (57.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 48 GFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRH 107
GFI + EDVFVH +K NPRK + + +GET FD+++G+KG E +VT P G
Sbjct: 63 GFINRNDTKEDVFVHQTAVKKKNPRKNLRRVGDGET-GFDVVEGEKGAEVASVTDPGGVP 121
Query: 108 VQGSQ 112
VQG +
Sbjct: 122 VQGGK 126
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 215 GFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGNQFCFV 267
GFI + EDVFVH +K NPRK + + +GET FD+++G+KG + V
Sbjct: 63 GFINRNDTKEDVFVHQTAVKKKNPRKNLRRVGDGET-GFDVVEGEKGAEVASV 114
>TIGR_CMR|GSU_0191 [details] [associations]
symbol:GSU_0191 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951252.1 ProteinModelPortal:Q74GQ5 SMR:Q74GQ5
GeneID:2687816 KEGG:gsu:GSU0191 PATRIC:22023128 OMA:SVTFDVQ
ProtClustDB:CLSK827691 BioCyc:GSUL243231:GH27-130-MONOMER
Uniprot:Q74GQ5
Length = 66
Score = 129 (50.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 34 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 93
V G VKWF+ G+GF+ + EDVF H I + +K+L EG+ V F+I +G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFCHFSAISGDG----FKSLTEGDRVTFEITKGPK 56
Query: 94 GHEAINVT 101
G +A NVT
Sbjct: 57 GLQAANVT 64
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 201 VCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDK 260
V G VKWF+ G+GF+ + EDVF H I + +K+L EG+ V F+I +G K
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ-ENGEDVFCHFSAISGDG----FKSLTEGDRVTFEITKGPK 56
Query: 261 GNQ 263
G Q
Sbjct: 57 GLQ 59
>FB|FBgn0035626 [details] [associations]
symbol:lin-28 "lin-28" species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0001708 "cell fate specification" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005737 EMBL:AE014296 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310 CTD:38639
GeneTree:ENSGT00390000001177 EMBL:AF521096 EMBL:AY118360
RefSeq:NP_647983.1 UniGene:Dm.13816 ProteinModelPortal:Q9VRN5
SMR:Q9VRN5 STRING:Q9VRN5 PaxDb:Q9VRN5 EnsemblMetazoa:FBtr0077090
GeneID:38639 KEGG:dme:Dmel_CG17334 UCSC:CG17334-RA
FlyBase:FBgn0035626 InParanoid:Q9VRN5 OMA:FANHIAS OrthoDB:EOG447D9P
PhylomeDB:Q9VRN5 GenomeRNAi:38639 NextBio:809656 Bgee:Q9VRN5
GermOnline:CG17334 Uniprot:Q9VRN5
Length = 195
Score = 137 (53.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/114 (28%), Positives = 58/114 (50%)
Query: 5 DSGTKAEATPSNPSANESPKKEPVVLATKVCGVV-----KWFSVKSGYGFIATPSSNEDV 59
++G + T + +++ +P + T+ CG V KWF+V G+GF+ ++V
Sbjct: 7 ENGLERRTTSQSSTSSANPAN--LASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEV 64
Query: 60 FVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQF 113
FVH I+ + +++L E E VEF+ + +G EA V+ G QGS +
Sbjct: 65 FVHQSVIQMSG----FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTY 114
Score = 114 (45.2 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 172 DSGTKAEATPSNPSASESPKKEPVVLATKVCGVV-----KWFSVKSGYGFIATPSSNEDV 226
++G + T + ++S +P + T+ CG V KWF+V G+GF+ ++V
Sbjct: 7 ENGLERRTTSQSSTSSANPAN--LASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEV 64
Query: 227 FVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
FVH I+ + +++L E E VEF+ + +G
Sbjct: 65 FVHQSVIQMSG----FRSLGEQEEVEFECQRTSRG 95
>UNIPROTKB|Q5EB47 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0031054 "pre-miRNA processing"
evidence=ISS] [GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 eggNOG:COG1278 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:CR761690 EMBL:BC090084
RefSeq:NP_001015806.2 RefSeq:NP_001016266.1 UniGene:Str.45911
ProteinModelPortal:Q5EB47 SMR:Q5EB47 STRING:Q5EB47 GeneID:548523
KEGG:xtr:548523 Xenbase:XB-GENE-491384 Bgee:Q5EB47 Uniprot:Q5EB47
Length = 195
Score = 137 (53.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 36 GVVKWFSVKSGYGFIATPSSNE--------DVFVHSKRIKYNNPRKLYKTLAEGETVEFD 87
GV KWF+V+ G+GF+ T + E DVFVH ++ +++L EGE+VEF
Sbjct: 36 GVCKWFNVRMGFGFL-TMTKKEGTDLETPVDVFVHQSKLHMEG----FRSLKEGESVEFT 90
Query: 88 IMQGDKGHEAINVTGPDGRHVQGSQ 112
+ KG E+ VTGP G GS+
Sbjct: 91 FKKSSKGLESTRVTGPGGAPCIGSE 115
>UNIPROTKB|Q8JHC4 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8355
"Xenopus laevis" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0019827 GO:GO:0010494 CTD:79727
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:AF521098
RefSeq:NP_001080918.1 UniGene:Xl.76870 ProteinModelPortal:Q8JHC4
SMR:Q8JHC4 GeneID:387262 KEGG:xla:387262 Xenbase:XB-GENE-866059
Uniprot:Q8JHC4
Length = 195
Score = 137 (53.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 36 GVVKWFSVKSGYGFIATPSSNE--------DVFVHSKRIKYNNPRKLYKTLAEGETVEFD 87
GV KWF+V+ G+GF+ T + E DVFVH ++ +++L EGE+VEF
Sbjct: 36 GVCKWFNVRMGFGFL-TMTKKEGTDLETPLDVFVHQSKLHMEG----FRSLKEGESVEFT 90
Query: 88 IMQGDKGHEAINVTGPDGRHVQGSQ 112
+ KG E+ VTGP G GS+
Sbjct: 91 FKKSSKGLESTQVTGPGGAPCIGSE 115
>TIGR_CMR|SO_2628 [details] [associations]
symbol:SO_2628 "stress response protein CspD"
species:211586 "Shewanella oneidensis MR-1" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006950 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 HSSP:O54310
HOGENOM:HOG000070674 KO:K03704 TIGRFAMs:TIGR02381
RefSeq:NP_718213.1 ProteinModelPortal:Q8EDW3 SMR:Q8EDW3
GeneID:1170330 KEGG:son:SO_2628 PATRIC:23524883 OMA:DGCENDI
ProtClustDB:CLSK906807 Uniprot:Q8EDW3
Length = 68
Score = 128 (50.1 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI EDVF H I+ Y+TL G+ V+F++ QG KG
Sbjct: 4 GTVKWFNNAKGFGFICPDQGGEDVFAHYSTIEMEG----YRTLKAGQPVQFEVEQGPKGM 59
Query: 96 EA 97
A
Sbjct: 60 HA 61
Score = 126 (49.4 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
G VKWF+ G+GFI EDVF H I+ Y+TL G+ V+F++ QG KG
Sbjct: 4 GTVKWFNNAKGFGFICPDQGGEDVFAHYSTIEMEG----YRTLKAGQPVQFEVEQGPKG 58
>UNIPROTKB|Q61CX7 [details] [associations]
symbol:lin-28 "Protein lin-28" species:6238 "Caenorhabditis
briggsae" [GO:0001708 "cell fate specification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0007275 GO:GO:0001708 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:HE600940 eggNOG:COG1278 HSSP:O54310
ProteinModelPortal:Q61CX7 STRING:Q61CX7 EnsemblMetazoa:CBG12720
WormBase:CBG12720 HOGENOM:HOG000113330 Uniprot:Q61CX7
Length = 237
Score = 142 (55.0 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 65
+G E T PS + P P + G KWF+V GYGF+ ++ ED+FVH
Sbjct: 30 NGLSLEETMGIPSFDRLPSPTP-----RYFGSCKWFNVSKGYGFVIDDNTGEDLFVHQSN 84
Query: 66 IKYNNPRKLYKTLAEGETVEFDIMQ--GDKGHEAINVTGP-DGRHVQGSQ 112
+ +++L EGE V + I + KG EA V+G +G+ ++GS+
Sbjct: 85 LNMQG----FRSLDEGERVSYYIQERSNGKGKEAYAVSGEVEGQGLKGSR 130
Score = 120 (47.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/89 (31%), Positives = 41/89 (46%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKR 232
+G E T PS P P + G KWF+V GYGF+ ++ ED+FVH
Sbjct: 30 NGLSLEETMGIPSFDRLPSPTP-----RYFGSCKWFNVSKGYGFVIDDNTGEDLFVHQSN 84
Query: 233 IKYNNPRKLYKTLAEGETVEFDIMQGDKG 261
+ +++L EGE V + I + G
Sbjct: 85 LNMQG----FRSLDEGERVSYYIQERSNG 109
>UNIPROTKB|Q9H9Z2 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0045686 "negative regulation of glial cell differentiation"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0010587 "miRNA catabolic process" evidence=IMP]
[GO:0019827 "stem cell maintenance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0031123 "RNA 3'-end processing" evidence=IMP]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0003723 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 EMBL:AL513365 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:AF521099 EMBL:AK022519
EMBL:BC028566 IPI:IPI00002948 RefSeq:NP_078950.1 UniGene:Hs.86154
PDB:2CQF PDB:2LI8 PDBsum:2CQF PDBsum:2LI8 ProteinModelPortal:Q9H9Z2
SMR:Q9H9Z2 IntAct:Q9H9Z2 STRING:Q9H9Z2 PhosphoSite:Q9H9Z2
DMDM:74752750 PaxDb:Q9H9Z2 PRIDE:Q9H9Z2 DNASU:79727
Ensembl:ENST00000254231 Ensembl:ENST00000326279 GeneID:79727
KEGG:hsa:79727 UCSC:uc001bmj.3 GeneCards:GC01P026737
HGNC:HGNC:15986 HPA:CAB020785 MIM:611043 neXtProt:NX_Q9H9Z2
PharmGKB:PA165751523 InParanoid:Q9H9Z2 OMA:GVGVCKW PhylomeDB:Q9H9Z2
EvolutionaryTrace:Q9H9Z2 GenomeRNAi:79727 NextBio:69098 Bgee:Q9H9Z2
CleanEx:HS_LIN28 Genevestigator:Q9H9Z2 GermOnline:ENSG00000131914
GO:GO:0045686 Uniprot:Q9H9Z2
Length = 209
Score = 139 (54.0 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 39/111 (35%), Positives = 55/111 (49%)
Query: 10 AEATPSN-PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------DVFV 61
AE P P EP +L G+ KWF+V+ G+GF++ T + DVFV
Sbjct: 17 AEEAPEEAPEDAARAADEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 74
Query: 62 HSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
H ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 75 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE 121
>UNIPROTKB|P63848 [details] [associations]
symbol:cspA "Probable cold shock protein A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0040007 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842583 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 PIR:A70564
RefSeq:NP_218165.1 RefSeq:NP_338297.1 RefSeq:YP_006517135.1
ProteinModelPortal:P63848 SMR:P63848 PRIDE:P63848
EnsemblBacteria:EBMYCT00000001507 EnsemblBacteria:EBMYCT00000071867
GeneID:13317256 GeneID:885837 GeneID:922742 KEGG:mtc:MT3750.1
KEGG:mtu:Rv3648c KEGG:mtv:RVBD_3648c PATRIC:18130006
TubercuList:Rv3648c OMA:AWEDEEV ProtClustDB:CLSK792621
Uniprot:P63848
Length = 67
Score = 127 (49.8 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFIA + DVFVH I+ ++TL E + VEF+I KG
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTG----FRTLEENQKVEFEIGHSPKGP 59
Query: 96 EAINV 100
+A V
Sbjct: 60 QATGV 64
Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFIA + DVFVH I+ ++TL E + VEF+I KG
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTG----FRTLEENQKVEFEIGHSPKGP 59
Query: 263 Q 263
Q
Sbjct: 60 Q 60
>MGI|MGI:3584032 [details] [associations]
symbol:Lin28b "lin-28 homolog B (C. elegans)" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO] [GO:0031123 "RNA 3'-end
processing" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:3584032
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 EMBL:AC153847
GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127225 EMBL:AK133928 EMBL:AK012973
EMBL:AC155715 EMBL:BC089037 IPI:IPI00380861 IPI:IPI00652406
IPI:IPI00652717 IPI:IPI00798608 RefSeq:NP_001026942.1
UniGene:Mm.440328 ProteinModelPortal:Q45KJ6 SMR:Q45KJ6
DIP:DIP-48572N STRING:Q45KJ6 PhosphoSite:Q45KJ6 PRIDE:Q45KJ6
Ensembl:ENSMUST00000079390 GeneID:380669 KEGG:mmu:380669
UCSC:uc007faa.2 UCSC:uc007fab.1 NextBio:401084 Bgee:Q45KJ6
CleanEx:MM_LIN28B Genevestigator:Q45KJ6
GermOnline:ENSMUSG00000063804 Uniprot:Q45KJ6
Length = 247
Score = 142 (55.0 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 45/119 (37%), Positives = 59/119 (49%)
Query: 3 MCDSG-TKAEATPSNPSANESPKKEPVVL-ATKVCGVVKWFSVKSGYGFIATPS--SNE- 57
M + G +K E P E EP VL T C KWF+V+ G+GFI+ S N
Sbjct: 1 MAEGGASKGEEPEKLPGLAED---EPQVLHGTGHC---KWFNVRMGFGFISMISREGNPL 54
Query: 58 ----DVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
DVFVH ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 55 DIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTFKKSPKGLESIRVTGPGGSPCLGSE 109
>MGI|MGI:1890546 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10090
"Mus musculus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IGI;IMP] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0010586 "miRNA metabolic process"
evidence=IDA] [GO:0010587 "miRNA catabolic process"
evidence=ISO;IMP] [GO:0019827 "stem cell maintenance" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO;IMP;IDA] [GO:0031123 "RNA
3'-end processing" evidence=ISO] [GO:0031369 "translation
initiation factor binding" evidence=IPI] [GO:0035198 "miRNA
binding" evidence=IDA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IDA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IDA] [GO:0045727 "positive
regulation of translation" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048863 "stem cell differentiation"
evidence=IMP] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IGI] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:1890546
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0048863 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 GO:GO:0060964 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:AF521097 EMBL:BC068304 IPI:IPI00170180
RefSeq:NP_665832.1 UniGene:Mm.302567 PDB:3TRZ PDB:3TS0 PDB:3TS2
PDBsum:3TRZ PDBsum:3TS0 PDBsum:3TS2 ProteinModelPortal:Q8K3Y3
SMR:Q8K3Y3 DIP:DIP-48573N STRING:Q8K3Y3 PhosphoSite:Q8K3Y3
PRIDE:Q8K3Y3 Ensembl:ENSMUST00000051674 GeneID:83557 KEGG:mmu:83557
UCSC:uc008vdw.1 InParanoid:Q8K3Y3 NextBio:350634 Bgee:Q8K3Y3
CleanEx:MM_LIN28 Genevestigator:Q8K3Y3
GermOnline:ENSMUSG00000050966 Uniprot:Q8K3Y3
Length = 209
Score = 138 (53.6 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 39/111 (35%), Positives = 55/111 (49%)
Query: 10 AEATPSN-PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------DVFV 61
AE P P EP +L G+ KWF+V+ G+GF++ T + DVFV
Sbjct: 17 AEKAPEEAPPDAARAADEPQLLHG--AGICKWFNVRMGFGFLSMTARAGVALDPPVDVFV 74
Query: 62 HSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
H ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 75 HQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSE 121
>UNIPROTKB|Q47VJ5 [details] [associations]
symbol:CPS_4529 "Cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0003677
"DNA binding" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 126 (49.4 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI + DVF H I + +KTLAEG+ VEF + G KG
Sbjct: 6 GTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQKGP 60
Query: 96 EAINV 100
+A N+
Sbjct: 61 QAENI 65
Score = 119 (46.9 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ G+GFI + DVF H I + +KTLAEG+ VEF + G KG
Sbjct: 6 GTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQKGP 60
Query: 263 Q 263
Q
Sbjct: 61 Q 61
>TIGR_CMR|CPS_4529 [details] [associations]
symbol:CPS_4529 "cold shock protein cspV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 126 (49.4 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI + DVF H I + +KTLAEG+ VEF + G KG
Sbjct: 6 GTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQKGP 60
Query: 96 EAINV 100
+A N+
Sbjct: 61 QAENI 65
Score = 119 (46.9 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ G+GFI + DVF H I + +KTLAEG+ VEF + G KG
Sbjct: 6 GTVKWFNEAKGFGFIEQ-ENGPDVFAHFNAIVGDG----FKTLAEGQKVEFTVTDGQKGP 60
Query: 263 Q 263
Q
Sbjct: 61 Q 61
>TIGR_CMR|SPO_3625 [details] [associations]
symbol:SPO_3625 "cold shock protein CspA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HOGENOM:HOG000070673 RefSeq:YP_168819.1 ProteinModelPortal:Q5LMD9
SMR:Q5LMD9 GeneID:3195668 KEGG:sil:SPO3625 PATRIC:23380729
OMA:TMDGFKT Uniprot:Q5LMD9
Length = 68
Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFIA ++DVFVH ++ + +KL +G+ V FDI G G
Sbjct: 4 GTVKWFNSQKGFGFIAPEQGSKDVFVHISALERSGIQKL----DDGQAVTFDIESGRDGR 59
Query: 96 E-AINV 100
E AIN+
Sbjct: 60 ESAINL 65
Score = 116 (45.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFIA ++DVFVH ++ + +KL +G+ V FDI G G
Sbjct: 4 GTVKWFNSQKGFGFIAPEQGSKDVFVHISALERSGIQKL----DDGQAVTFDIESGRDGR 59
Query: 263 Q 263
+
Sbjct: 60 E 60
>TIGR_CMR|BA_2422 [details] [associations]
symbol:BA_2422 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_844799.1 RefSeq:YP_019064.1 RefSeq:YP_028518.1
ProteinModelPortal:Q81QK2 SMR:Q81QK2 DNASU:1086343
EnsemblBacteria:EBBACT00000011610 EnsemblBacteria:EBBACT00000017774
EnsemblBacteria:EBBACT00000021660 GeneID:1086343 GeneID:2816216
GeneID:2851992 KEGG:ban:BA_2422 KEGG:bar:GBAA_2422 KEGG:bat:BAS2257
OMA:ASESVHI ProtClustDB:CLSK916624
BioCyc:BANT260799:GJAJ-2323-MONOMER
BioCyc:BANT261594:GJ7F-2403-MONOMER Uniprot:Q81QK2
Length = 67
Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ + G+GFI N DVFVH I + +K+L EG+ V F++ G++G
Sbjct: 5 GKVKWFNSEKGFGFIEVEGGN-DVFVHFSAITGDG----FKSLDEGQEVSFEVEDGNRGP 59
Query: 96 EAINV 100
+A NV
Sbjct: 60 QAKNV 64
Score = 117 (46.2 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ + G+GFI N DVFVH I + +K+L EG+ V F++ G++G
Sbjct: 5 GKVKWFNSEKGFGFIEVEGGN-DVFVHFSAITGDG----FKSLDEGQEVSFEVEDGNRGP 59
Query: 263 QFCFVLK 269
Q V+K
Sbjct: 60 QAKNVVK 66
>UNIPROTKB|D4A0Q1 [details] [associations]
symbol:Lin28b "Protein Lin28b" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1597432 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:389421 IPI:IPI00951319 RefSeq:XP_002725926.1
RefSeq:XP_002729027.1 Ensembl:ENSRNOT00000064466 GeneID:689054
KEGG:rno:689054 NextBio:737812 Uniprot:D4A0Q1
Length = 247
Score = 138 (53.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 42/118 (35%), Positives = 57/118 (48%)
Query: 3 MCDSGT-KAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPS--SNE-- 57
M + G K E P E + V+ T C KWF+V+ G+GFI+ S N
Sbjct: 1 MAEGGAGKGEEPEKLPELAEDESQ--VLRGTGHC---KWFNVRMGFGFISMISREGNPLD 55
Query: 58 ---DVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
DVFVH ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 56 IPVDVFVHQSKLFMEG----FRSLKEGEPVEFTFKKSPKGLESIRVTGPGGNPCLGSE 109
>UNIPROTKB|Q9KSW4 [details] [associations]
symbol:cspD "Cold shock-like protein CspD" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 122 (48.0 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI + D+F H I+ + Y+TL G+ V + + QG KG+
Sbjct: 7 GTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDG----YRTLKAGQQVSYQVEQGPKGY 62
Query: 96 EAINVTGPDGR 106
A V +G+
Sbjct: 63 HASCVVPIEGQ 73
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG- 261
G VKWF+ G+GFI + D+F H I+ + Y+TL G+ V + + QG KG
Sbjct: 7 GTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDG----YRTLKAGQQVSYQVEQGPKGY 62
Query: 262 NQFCFV 267
+ C V
Sbjct: 63 HASCVV 68
>TIGR_CMR|VC_1142 [details] [associations]
symbol:VC_1142 "cold shock-like protein CspD" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0009409 "response
to cold" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 122 (48.0 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFI + D+F H I+ + Y+TL G+ V + + QG KG+
Sbjct: 7 GTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDG----YRTLKAGQQVSYQVEQGPKGY 62
Query: 96 EAINVTGPDGR 106
A V +G+
Sbjct: 63 HASCVVPIEGQ 73
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKG- 261
G VKWF+ G+GFI + D+F H I+ + Y+TL G+ V + + QG KG
Sbjct: 7 GTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDG----YRTLKAGQQVSYQVEQGPKGY 62
Query: 262 NQFCFV 267
+ C V
Sbjct: 63 HASCVV 68
>TIGR_CMR|CPS_0737 [details] [associations]
symbol:CPS_0737 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267487.1
ProteinModelPortal:Q488M7 SMR:Q488M7 GeneID:3518930
KEGG:cps:CPS_0737 PATRIC:21464787 OMA:PQAENVE
ProtClustDB:CLSK742412 BioCyc:CPSY167879:GI48-824-MONOMER
Uniprot:Q488M7
Length = 69
Score = 122 (48.0 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ V G VK+F+ G+GFI + DVFVH I + ++TLA+G+ V F +
Sbjct: 1 MSDTVTGKVKFFNETKGFGFIEQ-ENGPDVFVHFSAISGDG----FRTLADGQAVTFTVK 55
Query: 90 QGDKGHEAINV 100
QG KG EA NV
Sbjct: 56 QGQKGPEAENV 66
Score = 108 (43.1 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 197 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 256
++ V G VK+F+ G+GFI + DVFVH I + ++TLA+G+ V F +
Sbjct: 1 MSDTVTGKVKFFNETKGFGFIEQ-ENGPDVFVHFSAISGDG----FRTLADGQAVTFTVK 55
Query: 257 QGDKG 261
QG KG
Sbjct: 56 QGQKG 60
>UNIPROTKB|G3MX85 [details] [associations]
symbol:LOC539705 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 EMBL:DAAA02059465
RefSeq:XP_003584165.1 RefSeq:XP_003587957.1
Ensembl:ENSBTAT00000065480 GeneID:539705 KEGG:bta:539705
OMA:CMGSERR Uniprot:G3MX85
Length = 201
Score = 131 (51.2 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 35/95 (36%), Positives = 51/95 (53%)
Query: 25 KEPVVLATKVCGVVKWFSVKSGYGFIA-TPSSNE------DVFVHSKRIKYNNPRKLYKT 77
KEP +L G+ KWF+V G+GF++ T + DVFVH ++ +++
Sbjct: 25 KEPRLLHG--AGICKWFNVPMGFGFLSMTACAGVALDPPVDVFVHQSKLHMEG----FRS 78
Query: 78 LAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
L EGE VEF + KG E++ VTGP G GS+
Sbjct: 79 LKEGEAVEFTFKKSAKGLESLRVTGPWGVFCIGSE 113
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 137 (53.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 30/76 (39%), Positives = 40/76 (52%)
Query: 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90
A + G V WF+ GYGFI + ++FVH I Y++L G+ VEF I Q
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEG----YRSLTVGDAVEFAITQ 63
Query: 91 GDKGH-EAINVTGPDG 105
G G +A+NVT P G
Sbjct: 64 GSDGKTKAVNVTAPGG 79
Score = 112 (44.5 bits), Expect = 0.00046, P = 0.00046
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 257
A + G V WF+ GYGFI + ++FVH I Y++L G+ VEF I Q
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEG----YRSLTVGDAVEFAITQ 63
Query: 258 GDKG 261
G G
Sbjct: 64 GSDG 67
>UNIPROTKB|Q6ZN17 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031123 "RNA 3'-end processing" evidence=IMP] [GO:0010587
"miRNA catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127228 EMBL:AK131411 EMBL:Z95329
EMBL:AL135911 EMBL:BC127712 EMBL:BC127713 EMBL:BC137526
EMBL:BC137527 EMBL:BC141960 IPI:IPI00398131 IPI:IPI00854717
RefSeq:NP_001004317.1 UniGene:Hs.23616 PDB:4A4I PDBsum:4A4I
ProteinModelPortal:Q6ZN17 SMR:Q6ZN17 IntAct:Q6ZN17 STRING:Q6ZN17
PhosphoSite:Q6ZN17 DMDM:74758701 PaxDb:Q6ZN17 PeptideAtlas:Q6ZN17
PRIDE:Q6ZN17 Ensembl:ENST00000345080 GeneID:389421 KEGG:hsa:389421
UCSC:uc003pqv.1 GeneCards:GC06P105404 HGNC:HGNC:32207 HPA:HPA036630
MIM:611044 neXtProt:NX_Q6ZN17 PharmGKB:PA142671543
InParanoid:Q6ZN17 PhylomeDB:Q6ZN17 GenomeRNAi:389421 NextBio:102860
ArrayExpress:Q6ZN17 Bgee:Q6ZN17 CleanEx:HS_LIN28B
Genevestigator:Q6ZN17 GermOnline:ENSG00000187772 Uniprot:Q6ZN17
Length = 250
Score = 135 (52.6 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 39/110 (35%), Positives = 56/110 (50%)
Query: 15 SNPSANESPKK--EPVVLATKVC---GVVKWFSVKSGYGFIA------TPSSNE-DVFVH 62
++ E P K EP ++V G KWF+V+ G+GFI+ +P DVFVH
Sbjct: 6 ASKGGGEEPGKLPEPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVH 65
Query: 63 SKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 66 QSKLFMEG----FRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSE 111
>UNIPROTKB|F1RYQ5 [details] [associations]
symbol:F1RYQ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
GO:GO:0010587 GO:GO:0031123 OMA:GGHGCTS EMBL:CU407220 EMBL:CU074276
EMBL:JF913470 Ensembl:ENSSSCT00000004824 Uniprot:F1RYQ5
Length = 263
Score = 135 (52.6 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 38/100 (38%), Positives = 52/100 (52%)
Query: 21 ESPKKEPVVL-ATKVCGVVKWFSVKSGYGFIATPSSNE-------DVFVHSKRIKYNNPR 72
E ++E VL T C KWF+V+ G+GFI+ S DVFVH ++
Sbjct: 32 EQAEEESQVLHGTGHC---KWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEG-- 86
Query: 73 KLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
+++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 87 --FRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSE 124
>UNIPROTKB|P91599 [details] [associations]
symbol:lin-28 "Protein lin-28" species:31234
"Caenorhabditis remanei" [GO:0001708 "cell fate specification"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0007275 GO:GO:0001708
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310
EMBL:U75913 EMBL:U75914 ProteinModelPortal:P91599 Uniprot:P91599
Length = 214
Score = 131 (51.2 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 17 PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 76
PS + P P + G KWF+V GYGF+ + ED+FVH + ++
Sbjct: 37 PSFDRLPSPTP-----RYYGSCKWFNVSKGYGFVIDDITREDLFVHQSNLNMQG----FR 87
Query: 77 TLAEGETVEFDIMQ--GDKGHEAINVTGP-DGRHVQGSQ 112
+L EGE V + I + KG EA V+G +G+ ++GS+
Sbjct: 88 SLDEGERVSYYIQERSNGKGREAYAVSGEVEGQGLKGSR 126
Score = 108 (43.1 bits), Expect = 0.00058, P = 0.00058
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 184 PSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 243
PS P P + G KWF+V GYGF+ + ED+FVH + ++
Sbjct: 37 PSFDRLPSPTP-----RYYGSCKWFNVSKGYGFVIDDITREDLFVHQSNLNMQG----FR 87
Query: 244 TLAEGETVEFDIMQGDKG 261
+L EGE V + I + G
Sbjct: 88 SLDEGERVSYYIQERSNG 105
>UNIPROTKB|F1P7H7 [details] [associations]
symbol:LIN28B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 CTD:389421 OMA:GGHGCTS
EMBL:AAEX03008576 RefSeq:XP_539064.2 ProteinModelPortal:F1P7H7
Ensembl:ENSCAFT00000005790 GeneID:481943 KEGG:cfa:481943
Uniprot:F1P7H7
Length = 251
Score = 133 (51.9 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 36/117 (30%), Positives = 56/117 (47%)
Query: 3 MCDSGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIA------TPSSN 56
M + G ++ ++ ++ T C KWF+V+ G+GFI+ +P
Sbjct: 1 MAEGGASKGGEEPGKLPEQTEEESQILHGTGHC---KWFNVRMGFGFISMINREGSPLDI 57
Query: 57 E-DVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
DVFVH ++ +++L EGE VEF + KG E+I VTGP G GS+
Sbjct: 58 PVDVFVHQSKLFMEG----FRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSE 110
>WB|WBGene00003014 [details] [associations]
symbol:lin-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040034
"regulation of development, heterochronic" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0070883 "pre-miRNA
binding" evidence=IPI] [GO:0007549 "dosage compensation"
evidence=IGI] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0007275
GO:GO:0001708 GO:GO:0002009 GO:GO:0005737 GO:GO:0018991
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0040034 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310
GO:GO:0070883 GO:GO:0007549 HOGENOM:HOG000113330 EMBL:U75912
EMBL:U75915 EMBL:Z81494 RefSeq:NP_001021085.1 RefSeq:NP_492281.2
UniGene:Cel.22515 ProteinModelPortal:P92186 SMR:P92186
DIP:DIP-40151N IntAct:P92186 STRING:P92186 PaxDb:P92186
PRIDE:P92186 EnsemblMetazoa:F02E9.2a GeneID:172626
KEGG:cel:CELE_F02E9.2 UCSC:F02E9.2a CTD:38639 WormBase:F02E9.2a
WormBase:F02E9.2b GeneTree:ENSGT00390000001177 InParanoid:P92186
OMA:FATHKAK NextBio:876317 Uniprot:P92186
Length = 227
Score = 130 (50.8 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 17 PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 76
PS P P + G KWF+V GYGF+ + ED+FVH + ++
Sbjct: 41 PSFERLPSPTP-----RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQG----FR 91
Query: 77 TLAEGETVEFDIMQ--GDKGHEAINVTGP-DGRHVQGSQ 112
+L EGE V + I + KG EA V+G +G+ ++GS+
Sbjct: 92 SLDEGERVSYYIQERSNGKGREAYAVSGEVEGQGLKGSR 130
Score = 108 (43.1 bits), Expect = 0.00069, P = 0.00069
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 184 PSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 243
PS P P + G KWF+V GYGF+ + ED+FVH + ++
Sbjct: 41 PSFERLPSPTP-----RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQG----FR 91
Query: 244 TLAEGETVEFDIMQGDKG 261
+L EGE V + I + G
Sbjct: 92 SLDEGERVSYYIQERSNG 109
>UNIPROTKB|P92186 [details] [associations]
symbol:lin-28 "Protein lin-28" species:6239 "Caenorhabditis
elegans" [GO:0001708 "cell fate specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0007275 GO:GO:0001708 GO:GO:0002009 GO:GO:0005737
GO:GO:0018991 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0040034 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278
HSSP:O54310 GO:GO:0070883 GO:GO:0007549 HOGENOM:HOG000113330
EMBL:U75912 EMBL:U75915 EMBL:Z81494 RefSeq:NP_001021085.1
RefSeq:NP_492281.2 UniGene:Cel.22515 ProteinModelPortal:P92186
SMR:P92186 DIP:DIP-40151N IntAct:P92186 STRING:P92186 PaxDb:P92186
PRIDE:P92186 EnsemblMetazoa:F02E9.2a GeneID:172626
KEGG:cel:CELE_F02E9.2 UCSC:F02E9.2a CTD:38639 WormBase:F02E9.2a
WormBase:F02E9.2b GeneTree:ENSGT00390000001177 InParanoid:P92186
OMA:FATHKAK NextBio:876317 Uniprot:P92186
Length = 227
Score = 130 (50.8 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/99 (33%), Positives = 50/99 (50%)
Query: 17 PSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 76
PS P P + G KWF+V GYGF+ + ED+FVH + ++
Sbjct: 41 PSFERLPSPTP-----RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQG----FR 91
Query: 77 TLAEGETVEFDIMQ--GDKGHEAINVTGP-DGRHVQGSQ 112
+L EGE V + I + KG EA V+G +G+ ++GS+
Sbjct: 92 SLDEGERVSYYIQERSNGKGREAYAVSGEVEGQGLKGSR 130
Score = 108 (43.1 bits), Expect = 0.00069, P = 0.00069
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 184 PSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYK 243
PS P P + G KWF+V GYGF+ + ED+FVH + ++
Sbjct: 41 PSFERLPSPTP-----RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQG----FR 91
Query: 244 TLAEGETVEFDIMQGDKG 261
+L EGE V + I + G
Sbjct: 92 SLDEGERVSYYIQERSNG 109
>TIGR_CMR|SPO_1275 [details] [associations]
symbol:SPO_1275 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:KMRGKVS HOGENOM:HOG000070673
RefSeq:YP_166520.1 ProteinModelPortal:Q5LTY5 SMR:Q5LTY5
GeneID:3194159 KEGG:sil:SPO1275 PATRIC:23375855
ProtClustDB:CLSK759123 Uniprot:Q5LTY5
Length = 68
Score = 112 (44.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ GYGFIA +DVFVH ++ R LA+ + V F+++ G G
Sbjct: 4 GTVKWFNATKGYGFIAPDDGGKDVFVHISAVE----RSGLTGLADNQKVSFEMLDGRDGR 59
Query: 263 QFCFVLK 269
+ +K
Sbjct: 60 KMAGDIK 66
Score = 111 (44.1 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ GYGFIA +DVFVH ++ R LA+ + V F+++ G G
Sbjct: 4 GTVKWFNATKGYGFIAPDDGGKDVFVHISAVE----RSGLTGLADNQKVSFEMLDGRDGR 59
Query: 96 E 96
+
Sbjct: 60 K 60
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 130 (50.8 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 33/76 (43%), Positives = 41/76 (53%)
Query: 31 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 90
A + G V WFS GYGFI E++FVH I + R L TL GE+VE++I
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSL--TL--GESVEYEIAL 63
Query: 91 GDKGH-EAINVTGPDG 105
G G +AI VT P G
Sbjct: 64 GSDGKTKAIEVTAPGG 79
Score = 110 (43.8 bits), Expect = 0.00078, P = 0.00078
Identities = 27/64 (42%), Positives = 34/64 (53%)
Query: 198 ATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQ 257
A + G V WFS GYGFI E++FVH I + R L TL GE+VE++I
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSL--TL--GESVEYEIAL 63
Query: 258 GDKG 261
G G
Sbjct: 64 GSDG 67
>UNIPROTKB|C9J5V9 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050 GO:GO:0043231
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC098484
HOGENOM:HOG000116439 HGNC:HGNC:8014 IPI:IPI00643807
ProteinModelPortal:C9J5V9 SMR:C9J5V9 STRING:C9J5V9 PRIDE:C9J5V9
Ensembl:ENST00000332220 ArrayExpress:C9J5V9 Bgee:C9J5V9
Uniprot:C9J5V9
Length = 216
Score = 124 (48.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 6 SGTKAEATPSNPSANESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVH 62
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVH 87
Score = 124 (48.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 173 SGTKAEATPSNPSASESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSSNEDVFVH 229
SG T + P+ + KK V+ATKV G VKWF+V++GYGFI + EDVFVH
Sbjct: 36 SGGPGGLTSAAPAGGD--KK---VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVH 87
>TIGR_CMR|SPO_0437 [details] [associations]
symbol:SPO_0437 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HOGENOM:HOG000070673
RefSeq:YP_165700.1 ProteinModelPortal:Q5LWA5 SMR:Q5LWA5
GeneID:3192720 KEGG:sil:SPO0437 PATRIC:23374139 OMA:VEFAIHR
ProtClustDB:CLSK747481 Uniprot:Q5LWA5
Length = 68
Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 36 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGH 95
G VKWF+ G+GFIA +DVFVH ++ R LA+ + V +++ G G
Sbjct: 4 GTVKWFNTTKGFGFIAPEEGGKDVFVHISAVE----RSGLTGLADNQKVSYELKPGRDGR 59
Query: 96 EA 97
E+
Sbjct: 60 ES 61
Score = 105 (42.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 203 GVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIMQGDKGN 262
G VKWF+ G+GFIA +DVFVH ++ R LA+ + V +++ G G
Sbjct: 4 GTVKWFNTTKGFGFIAPEEGGKDVFVHISAVE----RSGLTGLADNQKVSYELKPGRDGR 59
Query: 263 QFCFVLK 269
+ LK
Sbjct: 60 ESAVDLK 66
>RGD|1307592 [details] [associations]
symbol:Lin28c "lin-28 homolog C (C. elegans)" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_233546 Ncbi:XP_233546
Length = 196
Score = 113 (44.8 bits), Expect = 0.00010, P = 0.00010
Identities = 32/99 (32%), Positives = 49/99 (49%)
Query: 21 ESPKKEPVVLATKVCGVVKWFSVKSGYGFIATPSS-------NEDVFVHSKRIKYNNPRK 73
++ +K P L G +V+ G+GF++ + DVFVH R+
Sbjct: 15 KAAEKAPEELPADTTGECH-XNVRMGFGFLSMTACAGVALDPTMDVFVHQSRLHTEG--- 70
Query: 74 LYKTLAEGETVEFDIMQGDKGHEAINVTGPDGRHVQGSQ 112
+++L EGE VEF + KG E+I+VTGP G GS+
Sbjct: 71 -FRSLKEGEAVEFTFKKSAKGLESIHVTGPGGMFCIGSE 108
>UNIPROTKB|P0A982 [details] [associations]
symbol:cspH "stress protein, member of the CspA family"
species:83333 "Escherichia coli K-12" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
EMBL:AF003591 PIR:C64840 RefSeq:NP_415509.1 RefSeq:YP_489261.1
ProteinModelPortal:P0A982 SMR:P0A982
EnsemblBacteria:EBESCT00000002155 EnsemblBacteria:EBESCT00000014860
GeneID:12931041 GeneID:945590 KEGG:ecj:Y75_p0961 KEGG:eco:b0989
PATRIC:32117203 EchoBASE:EB4029 EcoGene:EG14281 OMA:IEFCRIN
ProtClustDB:PRK15464 BioCyc:EcoCyc:G6510-MONOMER
BioCyc:ECOL316407:JW5134-MONOMER Genevestigator:P0A982
Uniprot:P0A982
Length = 70
Score = 90 (36.7 bits), Expect = 0.00086, P = 0.00086
Identities = 27/71 (38%), Positives = 36/71 (50%)
Query: 30 LATKVCGVVKWFSVKSGYGFIATPSSNEDVFVHSKRIKYNNPRKLYKTLAEGETVEFDIM 89
++ K+ G+VK F KSG GFI ++V VH I PR + L G VEF +
Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVH---ISAFTPRDA-EVLIPGLRVEFCRV 56
Query: 90 QGDKGHEAINV 100
G +G A NV
Sbjct: 57 NGLRGPTAANV 67
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 282 256 0.00086 114 3 11 22 0.48 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 144
No. of states in DFA: 590 (63 KB)
Total size of DFA: 184 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.03u 0.08s 23.11t Elapsed: 00:00:01
Total cpu time: 23.05u 0.08s 23.13t Elapsed: 00:00:01
Start: Thu Aug 15 13:10:34 2013 End: Thu Aug 15 13:10:35 2013
WARNINGS ISSUED: 1