BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5471
         (454 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PDM|P Chain P, Hibiscus Latent Singapore Virus
          Length = 162

 Score = 32.7 bits (73), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 22  DLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYE 81
           +LNT      ++ WV NP L  V +A L +A + +++ +  +E    T  + L A Q  +
Sbjct: 57  NLNTRYPLLGFYVWVRNPTLAPVFEALL-RATDTKNRIIEVEEESRPTTAETLNATQRVD 115

Query: 82  SAFHPDSGEKQNI----------FGRMSFQVPGGMA 107
            A      E  NI          + R +F+V  G++
Sbjct: 116 DATVAIHKEIDNILLLLQGGTAVYDRTAFEVASGLS 151


>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
           With The Cofactor Derivative Thiamin-2-Thiazolone
           Diphosphate And Adenosine Diphosphate
 pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
           With The Cofactor Derivative Thiamin-2-Thiazolone
           Diphosphate And Adenosine Diphosphate
 pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp And Oxalyl-Coa
 pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp And Oxalyl-Coa
 pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
           Reaction Intermediate
 pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
           Reaction Intermediate
 pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Formyl-Coa
 pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Formyl-Coa
 pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp
 pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With 3-Deaza-Thdp
 pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Coenzyme-A
 pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
           With Coenzyme-A
          Length = 568

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 184 LKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMA----ITGALLTFY 239
           L+K  KG  K    W   L         G K  + G+M+ + P GM       G +  F 
Sbjct: 333 LRKALKGAPKADAEWTGALKAKV----DGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFM 388

Query: 240 KTTPQIIFWQWVNQSFNALVN 260
              P I     VN+  NAL N
Sbjct: 389 LANPDI---SLVNEGANALDN 406


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,750,837
Number of Sequences: 62578
Number of extensions: 560693
Number of successful extensions: 1196
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 4
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)