Query psy5471
Match_columns 454
No_of_seqs 154 out of 380
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 18:24:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3767|consensus 100.0 2E-126 5E-131 939.7 25.0 321 7-454 5-328 (328)
2 TIGR00798 mtc tricarboxylate c 100.0 1E-124 2E-129 936.4 26.3 314 13-454 2-318 (318)
3 PF03820 Mtc: Tricarboxylate c 100.0 3E-121 6E-126 911.9 25.9 307 21-454 1-308 (308)
4 KOG3767|consensus 99.6 8.6E-16 1.9E-20 153.8 5.6 62 33-120 57-118 (328)
5 PF03820 Mtc: Tricarboxylate c 99.6 8.8E-16 1.9E-20 154.6 5.2 52 45-120 49-100 (308)
6 TIGR00798 mtc tricarboxylate c 99.5 3.2E-15 6.8E-20 150.9 4.2 52 45-120 57-108 (318)
7 TIGR03171 soxL2 Rieske iron-su 51.7 26 0.00056 36.7 5.2 80 249-351 39-120 (321)
8 PTZ00100 DnaJ chaperone protei 45.0 28 0.00062 31.4 3.8 64 19-89 35-98 (116)
9 KOG0721|consensus 36.4 27 0.00059 34.9 2.5 26 121-146 107-132 (230)
10 PF09413 DUF2007: Domain of un 33.5 18 0.00039 28.1 0.6 22 40-61 46-67 (67)
11 PF10049 DUF2283: Protein of u 32.7 25 0.00054 26.7 1.3 22 325-346 22-44 (50)
12 smart00271 DnaJ DnaJ molecular 31.1 43 0.00094 24.9 2.4 47 189-260 11-57 (60)
13 cd06257 DnaJ DnaJ domain or J- 29.5 50 0.0011 24.1 2.4 25 189-213 10-34 (55)
14 PHA03169 hypothetical protein; 29.3 27 0.00058 37.4 1.3 65 156-227 341-412 (413)
15 PF00226 DnaJ: DnaJ domain; I 27.1 90 0.002 23.7 3.6 50 190-264 11-60 (64)
16 KOG0894|consensus 21.5 25 0.00054 35.2 -0.7 47 103-149 44-101 (244)
17 KOG4355|consensus 20.6 53 0.0011 35.8 1.5 54 341-399 247-308 (547)
No 1
>KOG3767|consensus
Probab=100.00 E-value=2.2e-126 Score=939.72 Aligned_cols=321 Identities=49% Similarity=0.787 Sum_probs=314.0
Q ss_pred CCCCCCCCCCCCCCCCccchhHHhhhhhhccCCCcccCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhhhhccccCC
Q psy5471 7 GSPPEDRIAIDKPLFDLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYESAFHP 86 (454)
Q Consensus 7 ~~~~~~~~~~~~p~~dq~tf~GR~~hf~~~tdP~~l~~s~~el~~Ak~lv~~y~~g~~~~~~t~~~l~~ak~~~~s~~HP 86 (454)
.++.++++||++|||||+||+||+||||++|||+|||+|+++|++|+++|++||+|++++++|+||||+||+
T Consensus 5 ~~~~~~~~di~~pr~dq~tf~gR~~h~~~itdP~tlf~s~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akk-------- 76 (328)
T KOG3767|consen 5 ASPLPPLPDISKPRWDQSTFLGRVKHFFDITDPRTLFVSEKKLEEARQIVEDYKAGKVPPGLTDDELWKAKK-------- 76 (328)
T ss_pred ccCCCCCCCCCcccchHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHH--------
Confidence 467778899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCccccccccccccCCccchhhhhhhcccCCCCCCCCCchhHHHHhhhhhhcccCCCCCccccccccccccCCCcccc
Q psy5471 87 DSGEKQNIFGRMSFQVPGGMAITGALLTFYKLKKEPPGTTKNDAIRAKRLYESAFHPDTGEKQNIFGRMSFQVPGGMAVT 166 (454)
Q Consensus 87 dtge~i~~~~Rms~fvp~n~~i~~~ml~~~~t~~~~~~~~~~~~~~~~~~~~s~~hPdtge~~~~~~R~~~~~~~~~~~~ 166 (454)
+|||++||||||||+++||
T Consensus 77 -------------------------------------------------l~dS~~HPDTgEk~~~~gR------------ 95 (328)
T KOG3767|consen 77 -------------------------------------------------LYDSTFHPDTGEKMFLLGR------------ 95 (328)
T ss_pred -------------------------------------------------HHhcccCCCCCCccccccc------------
Confidence 8888888888888888888
Q ss_pred chhhhhhhcccchhhhhccCCCCCCcHHHHHHHHhhhhccccCCCCCcccccCccccccCchhhHHhhhcccCCCchhHH
Q psy5471 167 GALLTFYKYADYLSCYCLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQII 246 (454)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~n~~I~g~ML~~~~t~~~vi 246 (454)
||||||+||+|+||||+||+++|++|
T Consensus 96 ------------------------------------------------------MSaqvP~nm~itggmLt~y~~~p~vv 121 (328)
T KOG3767|consen 96 ------------------------------------------------------MSAQVPFNMVITGGMLTPYRTTPGVV 121 (328)
T ss_pred ------------------------------------------------------ccccCcCcchhhhhhcccCCCCCeee
Confidence 99999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhccCCCCCCCChhhhhhhHHHHHHhHHHHHHhhHHHHhhhhh---hhhhhhchHHHHHhhccccch
Q psy5471 247 FWQWVNQSFNALVNYTNRNANAPLTTTQLGVAYVSATVAACFTAIQFKSFLAKRAG---PFWQRYVPFAAVAAANCVNIP 323 (454)
Q Consensus 247 FWQW~NQSfNA~vNYtNRNass~~s~~ql~~sY~~At~sA~~~Algl~~~l~kr~~---pl~~R~VPf~AVA~An~vNi~ 323 (454)
||||+||||||+|||+|||+++++|.+|++.||++||++||++|||| |.++||++ |+++|+|||+|||+|||+|||
T Consensus 122 FwQW~NQSfNA~VNytNrsg~~~~t~~ql~~sY~~Att~A~s~AlGL-n~~vk~~~~l~PligRlVPfaAva~An~iNIp 200 (328)
T KOG3767|consen 122 FWQWFNQSFNAAVNYTNRSGNSPTTLSQLITSYCAATTGACSTALGL-NYLVKKANNLTPLIGRLVPFAAVAAANCINIP 200 (328)
T ss_pred eHHHhhhHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHHhhH-HHHHhhcccCCcHHhhhccHHHHHHhccceee
Confidence 99999999999999999999999999999999999999999999999 99999976 999999999999999999999
Q ss_pred hhchhhhhcCceeecCCCCeeeehHHHHHHhhhHHHhhhHhhhccchhhHHHHHHHHhhhhhhhcCCcchhhHHHHHHHH
Q psy5471 324 LMRQNEITNGVDVFDANGNRVGTSQLAAVKGISMVIFSRILMCAPGMLVLPIIVEKLEKYRWYRTRTWFHAPFQTLGVGC 403 (454)
Q Consensus 324 lMR~~El~~GI~V~D~~G~~vG~Sk~AA~kAI~qta~SRi~ma~P~m~lPPlim~~Lek~~~~~r~p~l~~P~ql~l~g~ 403 (454)
+||++|+++||+|+|||||++|+||+||++||.||++|||+|++|+|++||+||++|||+.|++++||+.+|+|+++||+
T Consensus 201 mMR~~El~~GI~V~D~~g~~lG~Sk~AA~~aI~qv~lSRI~ma~P~mvipPvim~~lek~~~~~~~p~~~~plq~~l~g~ 280 (328)
T KOG3767|consen 201 MMRSNELREGIDVFDENGNVLGKSKKAAKQAITQVVLSRIVMAMPSMVIPPVIMNRLEKTAYLRKRPGMLAPLQTLLCGL 280 (328)
T ss_pred ecchhhHhcCceeecCCCCEecccHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHhhcCccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhcccccceeccccCCCCCHHHHHHHhhcCCCceEEEEecCC
Q psy5471 404 FLMVMVPTACAIFPQMTSIGTSTLETLEPEAAQQIKSKDKKLSTVFFNKGL 454 (454)
Q Consensus 404 ~L~f~lP~a~ALFPQ~~sI~~s~L~~~EpElq~~~~~~g~~~~~VyyNKGL 454 (454)
+|+||+|+|||||||+++|++++| |+|+|+.++|.+++++.|||||||
T Consensus 281 ~l~~a~Pl~calFPQ~s~I~~~~L---E~~~q~~i~e~~~~~~~vy~NKGL 328 (328)
T KOG3767|consen 281 ALGFATPLACALFPQKSAIQVTKL---EPELQQLIPELANPPEIVYYNKGL 328 (328)
T ss_pred HHHHHhhHHhhhcccccccccccc---cHHHhhhhhhcCCCceEEEecCCC
Confidence 999999999999999999999999 999999999999999999999998
No 2
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=100.00 E-value=1.1e-124 Score=936.41 Aligned_cols=314 Identities=46% Similarity=0.789 Sum_probs=303.2
Q ss_pred CCCCCCCCCCccchhHHhhhhhhccCCCcccCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhhhhccccCCCCCCcc
Q psy5471 13 RIAIDKPLFDLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQ 92 (454)
Q Consensus 13 ~~~~~~p~~dq~tf~GR~~hf~~~tdP~~l~~s~~el~~Ak~lv~~y~~g~~~~~~t~~~l~~ak~~~~s~~HPdtge~i 92 (454)
++||++|||||+|||||+|||+++|||||||+|++||++||+++++||+|+++ +.|+||||+||+
T Consensus 2 ~~~l~~pr~DqsTy~GR~~hf~~itDP~~lf~s~~~L~~a~~ll~~yr~g~~~-~~t~~~lW~Akk-------------- 66 (318)
T TIGR00798 2 TFDISKPRWDQSTFLGRARHFFEITNPLTLFSSEKQLEKAREIVEDYKAGKAS-PLTVDELWRAKK-------------- 66 (318)
T ss_pred CCCCCCCccchHHHHHHHHHHHhhCChhhhcCCHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHH--------------
Confidence 48999999999999999999999999999999999999999999999999985 466688888888
Q ss_pred ccccccccccCCccchhhhhhhcccCCCCCCCCCchhHHHHhhhhhhcccCCCCCccccccccccccCCCccccchhhhh
Q psy5471 93 NIFGRMSFQVPGGMAITGALLTFYKLKKEPPGTTKNDAIRAKRLYESAFHPDTGEKQNIFGRMSFQVPGGMAVTGALLTF 172 (454)
Q Consensus 93 ~~~~Rms~fvp~n~~i~~~ml~~~~t~~~~~~~~~~~~~~~~~~~~s~~hPdtge~~~~~~R~~~~~~~~~~~~~~~~~~ 172 (454)
+|||++||||||+|+++||
T Consensus 67 -------------------------------------------~~dS~~HPDTGe~i~~~fR------------------ 85 (318)
T TIGR00798 67 -------------------------------------------LYDSAFHPDTGEKMFLPGR------------------ 85 (318)
T ss_pred -------------------------------------------HHHhhcCCCCCCccccccc------------------
Confidence 7888888888887777777
Q ss_pred hhcccchhhhhccCCCCCCcHHHHHHHHhhhhccccCCCCCcccccCccccccCchhhHHhhhcccCCCchhHHHHHHHh
Q psy5471 173 YKYADYLSCYCLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQWVN 252 (454)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~n~~I~g~ML~~~~t~~~viFWQW~N 252 (454)
||+|||+|++|+||||++|+|++++|||||+|
T Consensus 86 ------------------------------------------------MS~fvP~n~~i~~gMl~p~~t~~~~iFWQw~N 117 (318)
T TIGR00798 86 ------------------------------------------------MSAQVPMNMVITGGMLTPYRSTPGVVFWQWIN 117 (318)
T ss_pred ------------------------------------------------ceeeeeccchhHhHhhcCCCCCchhHHHHHhh
Confidence 99999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCCChhhhhhhHHHHHHhHHHHHHhhHHHHhhhh---hhhhhhhchHHHHHhhccccchhhchhh
Q psy5471 253 QSFNALVNYTNRNANAPLTTTQLGVAYVSATVAACFTAIQFKSFLAKRA---GPFWQRYVPFAAVAAANCVNIPLMRQNE 329 (454)
Q Consensus 253 QSfNA~vNYtNRNass~~s~~ql~~sY~~At~sA~~~Algl~~~l~kr~---~pl~~R~VPf~AVA~An~vNi~lMR~~E 329 (454)
|||||+|||+|||+|+++|++|++.+|++||++||++|||| |.+++|. +|+++|+|||+|||+|||+||++||++|
T Consensus 118 QS~Na~vNyaNrNas~~~s~~ql~~sY~~Av~~a~~~AlgL-n~~v~k~~~~~pll~R~VPf~AVa~An~~Ni~lMR~~E 196 (318)
T TIGR00798 118 QSFNAAVNYTNRSGDSPLTLSQLLVSYCAAVTGACGVALGL-NMMVKKSPSLSPLIGRLVPFAAVAVANAINIPMMRGNE 196 (318)
T ss_pred hhhHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhH-HHHHhhhccccHHHHHhCcHHHHHHhcccchHhhhhHH
Confidence 99999999999999999999999999999999999999999 9999774 6899999999999999999999999999
Q ss_pred hhcCceeecCCCCeeeehHHHHHHhhhHHHhhhHhhhccchhhHHHHHHHHhhhhhhhcCCcchhhHHHHHHHHHHhhhh
Q psy5471 330 ITNGVDVFDANGNRVGTSQLAAVKGISMVIFSRILMCAPGMLVLPIIVEKLEKYRWYRTRTWFHAPFQTLGVGCFLMVMV 409 (454)
Q Consensus 330 l~~GI~V~D~~G~~vG~Sk~AA~kAI~qta~SRi~ma~P~m~lPPlim~~Lek~~~~~r~p~l~~P~ql~l~g~~L~f~l 409 (454)
+++||+|+|+|||++|+||+||++||+||++|||+|++|+|++||++|+.|||++|++|+|++.+|+|+++|+++|+||+
T Consensus 197 l~~GI~V~D~~G~~vG~Sk~Aa~~Av~eta~SRv~~~~P~m~lpPlim~~l~k~~~l~~~p~l~~pi~~~l~~~~l~~~l 276 (318)
T TIGR00798 197 LTEGIEVFDEDGETVGKSKKAAALAIAQVVLSRVIMAVPDMVMPPLIMNRLERTAWLRARPWMQIPIQTLLCGLGLAFAT 276 (318)
T ss_pred HhcCceeECCCCCccchhHHHHHHHHHHHHHHHHHHhchHhhccHHHHHHHhhhHHhhhCchhhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceeccccCCCCCHHHHHHHhhcCCCceEEEEecCC
Q psy5471 410 PTACAIFPQMTSIGTSTLETLEPEAAQQIKSKDKKLSTVFFNKGL 454 (454)
Q Consensus 410 P~a~ALFPQ~~sI~~s~L~~~EpElq~~~~~~g~~~~~VyyNKGL 454 (454)
|+|||+|||+++|++++| |||+|+.++++|+++++|||||||
T Consensus 277 P~a~alFPQ~~~I~~~~L---Epe~~~~~~~~~~~~~~v~yNKGL 318 (318)
T TIGR00798 277 PLACALFPQKSAISVDKL---EPSLQNLIQKLGNPPKVVYYNKGL 318 (318)
T ss_pred HHHHHhccccccCcHHhc---CHHHHHhhhccCCCCceEEeCCCC
Confidence 999999999999999999 999999999999999999999998
No 3
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.7e-121 Score=911.94 Aligned_cols=307 Identities=51% Similarity=0.811 Sum_probs=294.3
Q ss_pred CCccchhHHhhhhhhccCCCcccCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhhhhccccCCCCCCcccccccccc
Q psy5471 21 FDLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSF 100 (454)
Q Consensus 21 ~dq~tf~GR~~hf~~~tdP~~l~~s~~el~~Ak~lv~~y~~g~~~~~~t~~~l~~ak~~~~s~~HPdtge~i~~~~Rms~ 100 (454)
|||+||+||+|||+++|||+|||.|++||++||+++++||+|+.++++|++|||+||+
T Consensus 1 ~Dq~Tf~GR~~hf~~~tdP~~l~~S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~---------------------- 58 (308)
T PF03820_consen 1 YDQSTFWGRFRHFFDITDPRNLFASEAELEEAKELLEDYRAGKVPPGLTDDELWKAKK---------------------- 58 (308)
T ss_pred CCchhHHHHHHHHHHhcCchhhcCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH----------------------
Confidence 8999999999999999999999999999999999999999999877777777777777
Q ss_pred ccCCccchhhhhhhcccCCCCCCCCCchhHHHHhhhhhhcccCCCCCccccccccccccCCCccccchhhhhhhcccchh
Q psy5471 101 QVPGGMAITGALLTFYKLKKEPPGTTKNDAIRAKRLYESAFHPDTGEKQNIFGRMSFQVPGGMAVTGALLTFYKYADYLS 180 (454)
Q Consensus 101 fvp~n~~i~~~ml~~~~t~~~~~~~~~~~~~~~~~~~~s~~hPdtge~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (454)
+|||++||||||+|+++||
T Consensus 59 -----------------------------------l~~Sa~HPDTge~i~~~fR-------------------------- 77 (308)
T PF03820_consen 59 -----------------------------------LYDSAFHPDTGEKIPLPFR-------------------------- 77 (308)
T ss_pred -----------------------------------HhhcccCCCCCCccccccc--------------------------
Confidence 6666666666666666666
Q ss_pred hhhccCCCCCCcHHHHHHHHhhhhccccCCCCCcccccCccccccCchhhHHhhhcccCCCchhHHHHHHHhhhhhhhhh
Q psy5471 181 CYCLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQWVNQSFNALVN 260 (454)
Q Consensus 181 ~~~~~~~~~~~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~n~~I~g~ML~~~~t~~~viFWQW~NQSfNA~vN 260 (454)
||||||+|++|+||||++|+|++++|||||+||||||+||
T Consensus 78 ----------------------------------------msa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vN 117 (308)
T PF03820_consen 78 ----------------------------------------MSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVN 117 (308)
T ss_pred ----------------------------------------cccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHh
Confidence 9999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCChhhhhhhHHHHHHhHHHHHHhhHHHHh-hhhhhhhhhhchHHHHHhhccccchhhchhhhhcCceeecC
Q psy5471 261 YTNRNANAPLTTTQLGVAYVSATVAACFTAIQFKSFLA-KRAGPFWQRYVPFAAVAAANCVNIPLMRQNEITNGVDVFDA 339 (454)
Q Consensus 261 YtNRNass~~s~~ql~~sY~~At~sA~~~Algl~~~l~-kr~~pl~~R~VPf~AVA~An~vNi~lMR~~El~~GI~V~D~ 339 (454)
|+|||+|+++|++|++.+|++||++||++|+|| |.++ ++++|+++|+|||+|||+|||+||++||++|+++||+|+|+
T Consensus 118 y~Nrnas~~~~~~~l~~sY~~At~~a~~~Algl-~~~~~~~~~pl~~r~vPf~AVA~An~~Nv~~mR~~El~~GI~V~D~ 196 (308)
T PF03820_consen 118 YTNRNASSPISTSQLLTSYVGATTSAVGTALGL-NRLVKKNASPLLGRLVPFAAVAAANCINVPLMRSNELENGIEVFDE 196 (308)
T ss_pred hhccCCCCcccHHHHHHhHHhhhHHHHHHHHHH-HHHHhccccHHHHHHhhHHHHHHhhhcchHhcCHHHHcccceeECC
Confidence 999999999999999999999999999999999 8888 67889999999999999999999999999999999999999
Q ss_pred CCCeeeehHHHHHHhhhHHHhhhHhhhccchhhHHHHHHHHhhhhhhhcCCcchhhHHHHHHHHHHhhhhhhhhhccccc
Q psy5471 340 NGNRVGTSQLAAVKGISMVIFSRILMCAPGMLVLPIIVEKLEKYRWYRTRTWFHAPFQTLGVGCFLMVMVPTACAIFPQM 419 (454)
Q Consensus 340 ~G~~vG~Sk~AA~kAI~qta~SRi~ma~P~m~lPPlim~~Lek~~~~~r~p~l~~P~ql~l~g~~L~f~lP~a~ALFPQ~ 419 (454)
|||++|+||+||++||+||++||++|++|+|++||++|+.|||++|++|+||+..|+|+++++++|+||+|+|||+|||+
T Consensus 197 ~G~~vG~Sk~Aa~~Av~~t~~SRi~~~~P~m~lpPlim~~l~r~~~~~~~p~~~~p~~~~l~~~~l~~~~P~a~AlFPQ~ 276 (308)
T PF03820_consen 197 DGNVVGKSKKAARKAVSQTALSRIVMAAPSMLLPPLIMNRLERTPFLKRNPWLNAPIQLALIGLCLGFMLPLACALFPQR 276 (308)
T ss_pred CCCEeeEEhHHHHHHHHHHHHHHHHHhchhhhCcHHHHHHHHHhHHHHhCchhhhhHHhHHHHHHHHHhhhhHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccccCCCCCHHHHHHHhhcCCCceEEEEecCC
Q psy5471 420 TSIGTSTLETLEPEAAQQIKSKDKKLSTVFFNKGL 454 (454)
Q Consensus 420 ~sI~~s~L~~~EpElq~~~~~~g~~~~~VyyNKGL 454 (454)
++|++++| |||+|++++++|+++++|||||||
T Consensus 277 ~si~~~~L---Epe~~~~~~~~g~~~~~vyyNKGL 308 (308)
T PF03820_consen 277 SSISVSKL---EPELQELTEKKGPPPTTVYYNKGL 308 (308)
T ss_pred cccchHhc---CHHHHHHHhhcCCCCCEEEeCCCC
Confidence 99999999 999999999999999999999998
No 4
>KOG3767|consensus
Probab=99.59 E-value=8.6e-16 Score=153.82 Aligned_cols=62 Identities=48% Similarity=0.658 Sum_probs=55.1
Q ss_pred hhhccCCCcccCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhhhhccccCCCCCCccccccccccccCCccchhhhh
Q psy5471 33 FAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGAL 112 (454)
Q Consensus 33 f~~~tdP~~l~~s~~el~~Ak~lv~~y~~g~~~~~~t~~~l~~ak~~~~s~~HPdtge~i~~~~Rms~fvp~n~~i~~~m 112 (454)
+-.-+.+-+ .+++|||+||++.| |++||||||+|+.+||||+|||+|++|++||
T Consensus 57 yk~G~~~p~--~t~~~lW~Akkl~d------------------------S~~HPDTgEk~~~~gRMSaqvP~nm~itggm 110 (328)
T KOG3767|consen 57 YKAGKVPPG--LTDDELWKAKKLYD------------------------STFHPDTGEKMFLLGRMSAQVPFNMVITGGM 110 (328)
T ss_pred hccCCcCCC--CcHHHHHHHHHHHh------------------------cccCCCCCCcccccccccccCcCcchhhhhh
Confidence 333344444 68999999999999 9999999999999999999999999999999
Q ss_pred hhcccCCC
Q psy5471 113 LTFYKLKK 120 (454)
Q Consensus 113 l~~~~t~~ 120 (454)
|+||++.+
T Consensus 111 Lt~y~~~p 118 (328)
T KOG3767|consen 111 LTPYRTTP 118 (328)
T ss_pred cccCCCCC
Confidence 99999886
No 5
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.59 E-value=8.8e-16 Score=154.58 Aligned_cols=52 Identities=56% Similarity=0.650 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhhhhccccCCCCCCccccccccccccCCccchhhhhhhcccCCC
Q psy5471 45 SDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKLKK 120 (454)
Q Consensus 45 s~~el~~Ak~lv~~y~~g~~~~~~t~~~l~~ak~~~~s~~HPdtge~i~~~~Rms~fvp~n~~i~~~ml~~~~t~~ 120 (454)
+++|||+||++.| |++||||||+|+++||||+|||+|+||++|||+++++++
T Consensus 49 ~~~~lw~Ak~l~~------------------------Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~ 100 (308)
T PF03820_consen 49 TDDELWKAKKLYD------------------------SAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTP 100 (308)
T ss_pred CHHHHHHHHHHhh------------------------cccCCCCCCccccccccccccccchHHHHHHhccCcchH
Confidence 9999999999999 999999999999999999999999999999999999885
No 6
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=99.54 E-value=3.2e-15 Score=150.87 Aligned_cols=52 Identities=54% Similarity=0.706 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhhhhccccCCCCCCccccccccccccCCccchhhhhhhcccCCC
Q psy5471 45 SDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKLKK 120 (454)
Q Consensus 45 s~~el~~Ak~lv~~y~~g~~~~~~t~~~l~~ak~~~~s~~HPdtge~i~~~~Rms~fvp~n~~i~~~ml~~~~t~~ 120 (454)
+++|||+||+++| |++||||||+|+++||||+|||+|++|++|||+++++++
T Consensus 57 t~~~lW~Akk~~d------------------------S~~HPDTGe~i~~~fRMS~fvP~n~~i~~gMl~p~~t~~ 108 (318)
T TIGR00798 57 TVDELWRAKKLYD------------------------SAFHPDTGEKMFLPGRMSAQVPMNMVITGGMLTPYRSTP 108 (318)
T ss_pred CHHHHHHHHHHHH------------------------hhcCCCCCCcccccccceeeeeccchhHhHhhcCCCCCc
Confidence 5589999999999 999999999999999999999999999999999999874
No 7
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=51.74 E-value=26 Score=36.73 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=50.0
Q ss_pred HHHhhhhhhhhhhccCCCCCC-CChhhhhhhHHHHHHhHHH-HHHhhHHHHhhhhhhhhhhhchHHHHHhhccccchhhc
Q psy5471 249 QWVNQSFNALVNYTNRNANAP-LTTTQLGVAYVSATVAACF-TAIQFKSFLAKRAGPFWQRYVPFAAVAAANCVNIPLMR 326 (454)
Q Consensus 249 QW~NQSfNA~vNYtNRNass~-~s~~ql~~sY~~At~sA~~-~Algl~~~l~kr~~pl~~R~VPf~AVA~An~vNi~lMR 326 (454)
.|+|.-=.-++||+|.|.-.+ ++-.+++.. |++++.+ .++++ =|+++.|+| ++.+.|...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~vD~~RR~fL~~---al~gAga~a~~~a--------vPlv~~l~P-P~~a~atG~------ 100 (321)
T TIGR03171 39 EFVNKGEDYLFNYVNKNVGGVDEGRRKFLKG---LIFGIAAAAVVGI--------IPGLRVLVP-PTVAAASGF------ 100 (321)
T ss_pred HHHhhhhHHHhhhhhcccCCCCccHHHHHHH---HHHHHHHHHhhhh--------hhheecccC-chhhhccCC------
Confidence 578888888999999997655 566666663 2222222 22222 267888888 444433211
Q ss_pred hhhhhcCceeecCCCCeeeehHHHH
Q psy5471 327 QNEITNGVDVFDANGNRVGTSQLAA 351 (454)
Q Consensus 327 ~~El~~GI~V~D~~G~~vG~Sk~AA 351 (454)
.++-+.|++||.|=.|....
T Consensus 101 -----pk~La~D~~GnPIKASdL~v 120 (321)
T TIGR03171 101 -----PKSLLVDSSGNPIKASSIPV 120 (321)
T ss_pred -----CceEEecCCCCeeeHHHccC
Confidence 23667799999986666543
No 8
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=44.99 E-value=28 Score=31.38 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCCCccchhHHhhhhhhccCCCcccCCHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhhhhccccCCCCC
Q psy5471 19 PLFDLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLYESAFHPDSG 89 (454)
Q Consensus 19 p~~dq~tf~GR~~hf~~~tdP~~l~~s~~el~~Ak~lv~~y~~g~~~~~~t~~~l~~ak~~~~s~~HPdtg 89 (454)
--+..|.|.++.+-|+.-. ..+-|...-..++|.+++. ++++.|.+|+-+|=+-.--.+|||.|
T Consensus 35 ~~~~~s~~~~~~~~~~~~~-~~~~f~~~Ms~~eAy~ILG------v~~~As~~eIkkaYRrLa~~~HPDkg 98 (116)
T PTZ00100 35 MSFPLSGFNPSLGSLFLKN-DLKGFENPMSKSEAYKILN------ISPTASKERIREAHKQLMLRNHPDNG 98 (116)
T ss_pred ccCCchhhhHHHHHHHhcc-ccccccCCCCHHHHHHHcC------CCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 3556777888877666443 4455555555566666654 67889999998776666677899975
No 9
>KOG0721|consensus
Probab=36.35 E-value=27 Score=34.93 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.5
Q ss_pred CCCCCCchhHHHHhhhhhhcccCCCC
Q psy5471 121 EPPGTTKNDAIRAKRLYESAFHPDTG 146 (454)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~s~~hPdtg 146 (454)
-++|++..|+.+|.|...=-+|||..
T Consensus 107 l~pgas~~eIKkaYR~LSik~HPDK~ 132 (230)
T KOG0721|consen 107 LDPGASEKEIKKAYRRLSIKYHPDKQ 132 (230)
T ss_pred CCCCCCHHHHHHHHHHhhhhhCCCcC
Confidence 57899999999999999999999974
No 10
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=33.46 E-value=18 Score=28.14 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=19.4
Q ss_pred CcccCCHHHHHHHHHHHHHhhc
Q psy5471 40 ALCIVSDAELDKAKELRSQYLL 61 (454)
Q Consensus 40 ~~l~~s~~el~~Ak~lv~~y~~ 61 (454)
..+++.++|+++|++++++|++
T Consensus 46 ~~v~V~~~d~~~A~~il~~~~~ 67 (67)
T PF09413_consen 46 VEVYVPEEDYERAREILEEFEN 67 (67)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT-
T ss_pred eEEEECHHHHHHHHHHHHHhcC
Confidence 7789999999999999998863
No 11
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=32.74 E-value=25 Score=26.71 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=18.6
Q ss_pred hchhhhhcCcee-ecCCCCeeee
Q psy5471 325 MRQNEITNGVDV-FDANGNRVGT 346 (454)
Q Consensus 325 MR~~El~~GI~V-~D~~G~~vG~ 346 (454)
-++.|+..||-+ +|++|+.+|.
T Consensus 22 ~~s~e~~~~iild~d~~G~ivGI 44 (50)
T PF10049_consen 22 EESEELDDGIILDYDEDGRIVGI 44 (50)
T ss_pred eeeEEecCCEEEEECCCCCEEEE
Confidence 367788889988 8999999985
No 12
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=31.08 E-value=43 Score=24.95 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHhhhhccccCCCCCcccccCccccccCchhhHHhhhcccCCCchhHHHHHHHhhhhhhhhh
Q psy5471 189 KGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQWVNQSFNALVN 260 (454)
Q Consensus 189 ~~~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~n~~I~g~ML~~~~t~~~viFWQW~NQSfNA~vN 260 (454)
++.|.++|.+|....---+|||.+.-- ...+...++.+|+.|+.+-|
T Consensus 11 ~~~~~~~ik~ay~~l~~~~HPD~~~~~-------------------------~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 11 RDASLDEIKKAYRKLALKYHPDKNPGD-------------------------KEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------------hHHHHHHHHHHHHHHHHHcC
Confidence 348999999999999899999985320 12345566888888877644
No 13
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=29.49 E-value=50 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHhhhhccccCCCCC
Q psy5471 189 KGTTKEQVLWAKQLYESAFHPDSGE 213 (454)
Q Consensus 189 ~~~td~~l~~A~~~~~SavHPDTGe 213 (454)
...|.++|.++....-..+|||.+.
T Consensus 10 ~~~~~~~ik~~y~~l~~~~HPD~~~ 34 (55)
T cd06257 10 PDASDEEIKKAYRKLALKYHPDKNP 34 (55)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCC
Confidence 5679999999999998999999974
No 14
>PHA03169 hypothetical protein; Provisional
Probab=29.34 E-value=27 Score=37.39 Aligned_cols=65 Identities=28% Similarity=0.436 Sum_probs=46.2
Q ss_pred ccccCCCccccchhhhhhhccc-------chhhhhccCCCCCCcHHHHHHHHhhhhccccCCCCCcccccCccccccCc
Q psy5471 156 SFQVPGGMAVTGALLTFYKYAD-------YLSCYCLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPG 227 (454)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~ 227 (454)
++|+||- +.|.|.+|=+-++ +++-||+++. |-++|.+|+++|+. .||-++.+--.+.||+==+|+
T Consensus 341 aLqfpG~--~ssgvq~lP~~p~~p~~~~y~ItVyCqsk~----TaK~V~kaq~~yE~-~yp~a~~L~aSl~k~~~glPi 412 (413)
T PHA03169 341 CLQFPGA--VSSGVQTFPDAPGSPVIWAYCITVFCQSRG----TAKAVIKAQKKYEK-KYPRSAHLKASLVRMSRGLPI 412 (413)
T ss_pred HhccCCe--eccceeecCCCCCCCCCceeEEEEEecCcc----cHHHHHHHHHHHHh-hCCcchhhhhhhhcccCCCCC
Confidence 3555554 5555555543333 3666777765 56799999999985 699999999999999876664
No 15
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=27.08 E-value=90 Score=23.71 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=37.0
Q ss_pred CCcHHHHHHHHhhhhccccCCCCCcccccCccccccCchhhHHhhhcccCCCchhHHHHHHHhhhhhhhhhhccC
Q psy5471 190 GTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQWVNQSFNALVNYTNR 264 (454)
Q Consensus 190 ~~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~n~~I~g~ML~~~~t~~~viFWQW~NQSfNA~vNYtNR 264 (454)
..|.++|.+|....--.+|||...-.. -.+.-.++.+|+.|+.+-|-.+|
T Consensus 11 ~~~~~eik~~y~~l~~~~HPD~~~~~~-------------------------~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 11 DASDEEIKKAYRRLSKQYHPDKNSGDE-------------------------AEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp TSSHHHHHHHHHHHHHHTSTTTGTSTH-------------------------HHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCCHHHHHHHHHhhhhccccccchhhh-------------------------hhhhHHHHHHHHHHHHhCCHHHH
Confidence 778999999999999999999732222 23455667888888877665444
No 16
>KOG0894|consensus
Probab=21.53 E-value=25 Score=35.23 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=32.4
Q ss_pred CCccchhhh-----hhhcccCCCCCCCCCc----hhHHHHhhhhhhc--ccCCCCCcc
Q psy5471 103 PGGMAITGA-----LLTFYKLKKEPPGTTK----NDAIRAKRLYESA--FHPDTGEKQ 149 (454)
Q Consensus 103 p~n~~i~~~-----ml~~~~t~~~~~~~~~----~~~~~~~~~~~s~--~hPdtge~~ 149 (454)
|-..|-.+| +++++-.|+.|++.++ --.+.+.||..|. |||||=.+.
T Consensus 44 pedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktntRLCLSiSDfHPdsWNP~ 101 (244)
T KOG0894|consen 44 PEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTNTRLCLSISDFHPDSWNPG 101 (244)
T ss_pred CCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceecCceEEEeccccCcCcCCCc
Confidence 444555554 3455558888888766 3466778999887 999987544
No 17
>KOG4355|consensus
Probab=20.62 E-value=53 Score=35.77 Aligned_cols=54 Identities=26% Similarity=0.336 Sum_probs=39.2
Q ss_pred CCeeeehHHHHHHhhh----HHHhhhHhhhccchhhHHHHHHHHhhhhhhhcCCc----chhhHHHH
Q psy5471 341 GNRVGTSQLAAVKGIS----MVIFSRILMCAPGMLVLPIIVEKLEKYRWYRTRTW----FHAPFQTL 399 (454)
Q Consensus 341 G~~vG~Sk~AA~kAI~----qta~SRi~ma~P~m~lPPlim~~Lek~~~~~r~p~----l~~P~ql~ 399 (454)
|..+|+|---+-.++. |-+.+|+ +|..||.|.+.|+-..+..|+|+ ++.|+|.+
T Consensus 247 grdig~slp~ll~klv~~iPe~cmlr~-----gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsg 308 (547)
T KOG4355|consen 247 GRDIGKSLPKLLWKLVEVIPESCMLRA-----GMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSG 308 (547)
T ss_pred hhhhhhhhHHHHHHHHHhcchhhhhhh-----cCCCCchHHHHHHHHHHHhcCCeEEEEEecccccC
Confidence 5778988654444443 4455665 45778999999999988888884 78888865
Done!