Query psy5471
Match_columns 454
No_of_seqs 154 out of 380
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:24:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pm3_A MTH1895; unknown functi 42.2 10 0.00034 31.3 1.7 23 323-346 19-42 (97)
2 2guz_A Mitochondrial import in 31.0 23 0.00078 27.2 2.0 29 184-212 20-48 (71)
3 1lm7_A Subdomain of desmoplaki 29.5 23 0.00078 34.1 2.1 40 56-95 25-67 (248)
4 3htr_A Uncharacterized PRC-bar 27.5 27 0.00091 29.7 2.0 23 323-346 13-35 (120)
5 2guz_B Mitochondrial import in 26.6 20 0.00067 27.8 0.9 22 125-146 19-40 (65)
6 2guz_A Mitochondrial import in 24.0 27 0.00093 26.7 1.3 24 124-147 26-49 (71)
7 2ys8_A RAB-related GTP-binding 23.9 1.2E+02 0.004 24.1 5.1 54 188-268 36-89 (90)
8 1hdj_A Human HSP40, HDJ-1; mol 22.9 50 0.0017 25.2 2.6 26 122-147 12-37 (77)
9 2guz_B Mitochondrial import in 20.2 43 0.0015 25.9 1.7 22 191-212 19-40 (65)
10 1faf_A Large T antigen; J doma 20.2 91 0.0031 24.3 3.7 41 43-89 4-46 (79)
11 2och_A Hypothetical protein DN 20.1 56 0.0019 24.7 2.3 27 121-147 16-42 (73)
No 1
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=42.24 E-value=10 Score=31.33 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=19.7
Q ss_pred hhhch-hhhhcCceeecCCCCeeee
Q psy5471 323 PLMRQ-NEITNGVDVFDANGNRVGT 346 (454)
Q Consensus 323 ~lMR~-~El~~GI~V~D~~G~~vG~ 346 (454)
-+||. .|| .|-+|++.+|+.+|.
T Consensus 19 ~~Mr~~seL-~Gk~Vin~dG~~LG~ 42 (97)
T 1pm3_A 19 SHMRIVEEM-VGKEVLDSSAKVIGK 42 (97)
T ss_dssp -CEETTTTS-SSCEEECTTSCEEEE
T ss_pred eEEEeehhC-CCCEeECCCCCEEeE
Confidence 36998 787 499999999999996
No 2
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=31.01 E-value=23 Score=27.19 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=23.7
Q ss_pred ccCCCCCCcHHHHHHHHhhhhccccCCCC
Q psy5471 184 LKKEPKGTTKEQVLWAKQLYESAFHPDSG 212 (454)
Q Consensus 184 ~~~~~~~~td~~l~~A~~~~~SavHPDTG 212 (454)
+-..+.+.|.++|.+|....--.+|||.|
T Consensus 20 Lgl~~~~a~~~eIk~ayr~l~~~~HPDk~ 48 (71)
T 2guz_A 20 LNLTENTLTKKKLKEVHRKIMLANHPDKG 48 (71)
T ss_dssp TTCCTTTCCHHHHHHHHHHHHHHHCGGGT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 44444478999999999998889999975
No 3
>1lm7_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat, structural protein; 3.00A {Homo sapiens} SCOP: d.211.2.1
Probab=29.51 E-value=23 Score=34.09 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=23.5
Q ss_pred HHHhhcCCCCCCCCHHH---HHHHhhhhccccCCCCCCccccc
Q psy5471 56 RSQYLLKKEPKGTTKEQ---VLWAKQLYESAFHPDSGEKQNIF 95 (454)
Q Consensus 56 v~~y~~g~~~~~~t~~~---l~~ak~~~~s~~HPdtge~i~~~ 95 (454)
.++|++|++....-.++ +.++...+..-++|.|||+|++.
T Consensus 25 ~~~l~~G~i~~~e~~~~l~~~l~~~~~IaGv~d~~t~e~lSi~ 67 (248)
T 1lm7_A 25 VNELESGQISYDEVGERIKDFLQGSSCIAGIYNETTKQKLGIY 67 (248)
T ss_dssp HHHHHCC--CCTTHHHHSHHHHTCCCCEEEEEETTTTEEEEHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhcccCceeEEEeCCCCcEeeHH
Confidence 44677787553333223 33445556667899999988763
No 4
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=27.50 E-value=27 Score=29.73 Aligned_cols=23 Identities=22% Similarity=0.741 Sum_probs=19.9
Q ss_pred hhhchhhhhcCceeecCCCCeeee
Q psy5471 323 PLMRQNEITNGVDVFDANGNRVGT 346 (454)
Q Consensus 323 ~lMR~~El~~GI~V~D~~G~~vG~ 346 (454)
-+||..|| .|-+|++.||+.+|+
T Consensus 13 ~l~~~~~l-~G~~V~~~dG~~iG~ 35 (120)
T 3htr_A 13 KLIGSDKV-QGTAVYGPDGEKIGS 35 (120)
T ss_dssp SEEEHHHH-TTCEEECTTSCEEEE
T ss_pred ceEehhhc-cCCEEEcCCCCEEEE
Confidence 46777777 899999999999997
No 5
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=26.64 E-value=20 Score=27.84 Aligned_cols=22 Identities=5% Similarity=-0.056 Sum_probs=19.8
Q ss_pred CCchhHHHHhhhhhhcccCCCC
Q psy5471 125 TTKNDAIRAKRLYESAFHPDTG 146 (454)
Q Consensus 125 ~~~~~~~~~~~~~~s~~hPdtg 146 (454)
.+.+++.++.|-.=+.+|||.|
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkG 40 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKG 40 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGT
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 5789999998888899999997
No 6
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=24.01 E-value=27 Score=26.75 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCchhHHHHhhhhhhcccCCCCC
Q psy5471 124 GTTKNDAIRAKRLYESAFHPDTGE 147 (454)
Q Consensus 124 ~~~~~~~~~~~~~~~s~~hPdtge 147 (454)
+.+.+|+.++.|-.--.+|||.|.
T Consensus 26 ~a~~~eIk~ayr~l~~~~HPDk~g 49 (71)
T 2guz_A 26 TLTKKKLKEVHRKIMLANHPDKGG 49 (71)
T ss_dssp TCCHHHHHHHHHHHHHHHCGGGTC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC
Confidence 678899999988888899999863
No 7
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.92 E-value=1.2e+02 Score=24.14 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHHhhhhccccCCCCCcccccCccccccCchhhHHhhhcccCCCchhHHHHHHHhhhhhhhhhhccCCCC
Q psy5471 188 PKGTTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQWVNQSFNALVNYTNRNAN 267 (454)
Q Consensus 188 ~~~~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~n~~I~g~ML~~~~t~~~viFWQW~NQSfNA~vNYtNRNas 267 (454)
++..|.++|.+|....---+||| -++...+.--.|-+|+.|.++-+-..|-.+
T Consensus 36 ~~~as~~eIk~aYr~la~~~HPD---------------------------k~~~~~~~~~f~~i~~Ay~~L~d~~~R~~~ 88 (90)
T 2ys8_A 36 KPGASRDEVNKAYRKLAVLLHPD---------------------------KCVAPGSEDAFKAVVNARTALLKNIKSGPS 88 (90)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCTT---------------------------TCCCTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCcC---------------------------CCCCccHHHHHHHHHHHHHHHCCcccccCC
Q ss_pred C
Q psy5471 268 A 268 (454)
Q Consensus 268 s 268 (454)
+
T Consensus 89 ~ 89 (90)
T 2ys8_A 89 S 89 (90)
T ss_dssp C
T ss_pred C
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=22.90 E-value=50 Score=25.22 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCCCCchhHHHHhhhhhhcccCCCCC
Q psy5471 122 PPGTTKNDAIRAKRLYESAFHPDTGE 147 (454)
Q Consensus 122 ~~~~~~~~~~~~~~~~~s~~hPdtge 147 (454)
++..+.+|+.++.+-.-.-+|||.+.
T Consensus 12 ~~~as~~~Ik~ayr~l~~~~HPD~~~ 37 (77)
T 1hdj_A 12 ARGASDEEIKRAYRRQALRYHPDKNK 37 (77)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCCC
Confidence 45678899999988888899999864
No 9
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=20.22 E-value=43 Score=25.91 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=20.7
Q ss_pred CcHHHHHHHHhhhhccccCCCC
Q psy5471 191 TTKEQVLWAKQLYESAFHPDSG 212 (454)
Q Consensus 191 ~td~~l~~A~~~~~SavHPDTG 212 (454)
.|+++|.++-...-+..|||.|
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkG 40 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKG 40 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGT
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 7999999999999999999987
No 10
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=20.19 E-value=91 Score=24.33 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCC--CCHHHHHHHhhhhccccCCCCC
Q psy5471 43 IVSDAELDKAKELRSQYLLKKEPKG--TTKEQVLWAKQLYESAFHPDSG 89 (454)
Q Consensus 43 ~~s~~el~~Ak~lv~~y~~g~~~~~--~t~~~l~~ak~~~~s~~HPdtg 89 (454)
+.+..+..++-+++. ++++ .+.+|+-+|=+..---+|||.|
T Consensus 4 ~~~~~~~~~~y~iLg------l~~~~~a~~~eIk~aYr~la~~~HPDk~ 46 (79)
T 1faf_A 4 VLSRADKERLLELLK------LPRQLWGDFGRMQQAYKQQSLLLHPDKG 46 (79)
T ss_dssp CCCHHHHHHHHHHHT------CCSSSTTCHHHHHHHHHHHHHHSSGGGS
T ss_pred cccchhHHHHHHHcC------CCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 445666666666664 5666 7888887776655677999964
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.09 E-value=56 Score=24.73 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCCCCCchhHHHHhhhhhhcccCCCCC
Q psy5471 121 EPPGTTKNDAIRAKRLYESAFHPDTGE 147 (454)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~s~~hPdtge 147 (454)
.+++.+.+++.++.+-.---+|||.+.
T Consensus 16 l~~~a~~~eIk~ayr~l~~~~HPD~~~ 42 (73)
T 2och_A 16 VKPDASDNELKKAYRKMALKFHPDKNP 42 (73)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTCTTTCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCc
Confidence 345678899999988888889999863
Done!